Query psy16791
Match_columns 126
No_of_seqs 148 out of 924
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 22:11:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944|consensus 100.0 4.7E-38 1E-42 233.7 8.7 123 1-123 94-216 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.9 1.1E-28 2.4E-33 152.5 4.2 68 53-120 1-68 (68)
3 PF04835 Pox_A9: A9 protein co 41.3 70 0.0015 18.6 3.7 39 11-49 6-44 (54)
4 PF04854 DUF624: Protein of un 28.3 1.4E+02 0.003 17.8 4.2 37 41-77 21-61 (77)
5 PF11547 E3_UbLigase_EDD: E3 u 26.6 76 0.0017 18.1 2.2 22 52-73 16-37 (53)
6 TIGR01641 phageSPP1_gp7 phage 26.5 75 0.0016 20.3 2.6 21 52-72 6-26 (108)
7 PF13943 WPP: WPP domain 24.1 23 0.00051 23.2 -0.2 9 79-87 1-9 (99)
8 COG1644 RPB10 DNA-directed RNA 24.0 64 0.0014 19.4 1.7 35 5-39 9-43 (63)
9 PF03698 UPF0180: Uncharacteri 24.0 62 0.0013 20.3 1.7 16 57-72 64-79 (80)
10 cd02577 PSTD1 PSTD1: Pseudouri 22.3 66 0.0014 25.4 2.0 28 92-119 229-257 (319)
11 cd01240 PH_beta-ARK Beta adren 20.1 65 0.0014 21.7 1.3 20 6-25 12-31 (116)
No 1
>KOG1944|consensus
Probab=100.00 E-value=4.7e-38 Score=233.72 Aligned_cols=123 Identities=38% Similarity=0.805 Sum_probs=119.6
Q ss_pred CEEEEEechhhhHHHHHhccccCCCCchhHHHHHHHhhhhhhhHHHHHHHHHHHhhCCCChHhHHHHhhhchHHHHhhcc
Q psy16791 1 MFGTFYVAPTLYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLEGKTVDDGLHEVSHKFWPTYRIGV 80 (126)
Q Consensus 1 ~~G~~~~gp~~~~wy~~Ld~~~p~~~~~~~~~Kv~~Dq~v~~P~~~~~f~~~~~~l~g~s~~~~~~~~~~~~~~~~~~~~ 80 (126)
++|+++.||.+|+||+.||+.+|.++..++++|+++||++++|+.+.+|+..++++||++.++..++++++++|+++++|
T Consensus 94 ~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~ 173 (222)
T KOG1944|consen 94 IFGFLFVGPTLHYWYRLLSKLFPKKTLITVVKKVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANW 173 (222)
T ss_pred hhhhheeccchhHHHHHHHHHccCccHHHHHHHHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHhhhhheeccCCcceehhhhhHHHHHHHHHhhhccccc
Q psy16791 81 MVWPFAQLINYTLVSEKNRVPYVSVCSLLWTSFLAYMKYNNFE 123 (126)
Q Consensus 81 ~~Wp~~q~inF~~VP~~~Rvl~~n~v~~~W~~~LS~~~~~~~~ 123 (126)
++||++|++||++||+++|++++|+++++|++|||++++++++
T Consensus 174 ~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~~Ls~~~~~~~~ 216 (222)
T KOG1944|consen 174 MVWPLVQFINFRLVPLQYRVLFVNIVSLVWNTYLSYKNASLVE 216 (222)
T ss_pred eecchhheeeeEEccccceehhhhhHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999998843
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.95 E-value=1.1e-28 Score=152.50 Aligned_cols=68 Identities=34% Similarity=0.759 Sum_probs=66.3
Q ss_pred HHhhCCCChHhHHHHhhhchHHHHhhccccchHHhhhhheeccCCcceehhhhhHHHHHHHHHhhhcc
Q psy16791 53 MTLLEGKTVDDGLHEVSHKFWPTYRIGVMVWPFAQLINYTLVSEKNRVPYVSVCSLLWTSFLAYMKYN 120 (126)
Q Consensus 53 ~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~q~inF~~VP~~~Rvl~~n~v~~~W~~~LS~~~~~ 120 (126)
|+++||+|++++++++|++++++++++|++|||+|++||++||+++|++++|+|+++||+|||+++||
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999986
No 3
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=41.29 E-value=70 Score=18.61 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=30.1
Q ss_pred hhHHHHHhccccCCCCchhHHHHHHHhhhhhhhHHHHHH
Q psy16791 11 LYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPFAMISF 49 (126)
Q Consensus 11 ~~~wy~~Ld~~~p~~~~~~~~~Kv~~Dq~v~~P~~~~~f 49 (126)
-|....+-|..+..++...++.|.++...++--+.++..
T Consensus 6 rH~~myfce~k~R~NsF~fViik~vismimylilGi~L~ 44 (54)
T PF04835_consen 6 RHCFMYFCENKLRPNSFWFVIIKSVISMIMYLILGIALI 44 (54)
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777889999999999999999998876655544443
No 4
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=28.25 E-value=1.4e+02 Score=17.80 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHhhCCC-C---hHhHHHHhhhchHHHHh
Q psy16791 41 YTPFAMISFYFGMTLLEGK-T---VDDGLHEVSHKFWPTYR 77 (126)
Q Consensus 41 ~~P~~~~~f~~~~~~l~g~-s---~~~~~~~~~~~~~~~~~ 77 (126)
..|-..+.+.+.....+++ + +++-.+..|+++.....
T Consensus 21 igPA~~Al~~~~~~~~~~~~~~~~~~~f~~~fk~nf~~~~~ 61 (77)
T PF04854_consen 21 IGPATAALYYVVRKWVRDEEDSYLFRDFWRAFKQNFKQSLL 61 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666 2 33445555555555443
No 5
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=26.57 E-value=76 Score=18.14 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHHhhCCCChHhHHHHhhhchH
Q psy16791 52 GMTLLEGKTVDDGLHEVSHKFW 73 (126)
Q Consensus 52 ~~~~l~g~s~~~~~~~~~~~~~ 73 (126)
...+++|+|.+-+..++++.=.
T Consensus 16 ~q~VLqgksR~vIirELqrTnL 37 (53)
T PF11547_consen 16 AQVVLQGKSRNVIIRELQRTNL 37 (53)
T ss_dssp HHHHSTTS-HHHHHHHHHHTTT
T ss_pred HHHHHcCCcHHHHHHHHHHhcc
Confidence 3468999998888888887543
No 6
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=26.47 E-value=75 Score=20.32 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=17.4
Q ss_pred HHHhhCCCChHhHHHHhhhch
Q psy16791 52 GMTLLEGKTVDDGLHEVSHKF 72 (126)
Q Consensus 52 ~~~~l~g~s~~~~~~~~~~~~ 72 (126)
..++.+|++.+++.+++++.+
T Consensus 6 ~~gi~~G~~~~~iak~i~~~~ 26 (108)
T TIGR01641 6 ADGVQRGLGPNELAKRLRKEL 26 (108)
T ss_pred HHHHHcCCCHHHHHHHHHHHH
Confidence 457889999999999888775
No 7
>PF13943 WPP: WPP domain
Probab=24.09 E-value=23 Score=23.23 Aligned_cols=9 Identities=33% Similarity=0.840 Sum_probs=6.5
Q ss_pred ccccchHHh
Q psy16791 79 GVMVWPFAQ 87 (126)
Q Consensus 79 ~~~~Wp~~q 87 (126)
+.++|||.|
T Consensus 1 s~~lWPpsq 9 (99)
T PF13943_consen 1 SFKLWPPSQ 9 (99)
T ss_pred CCCcCCCCc
Confidence 457888875
No 8
>COG1644 RPB10 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription]
Probab=23.98 E-value=64 Score=19.39 Aligned_cols=35 Identities=14% Similarity=-0.046 Sum_probs=27.7
Q ss_pred EEechhhhHHHHHhccccCCCCchhHHHHHHHhhh
Q psy16791 5 FYVAPTLYCWLSIARRKWPKPTLSHSLKKALVEQV 39 (126)
Q Consensus 5 ~~~gp~~~~wy~~Ld~~~p~~~~~~~~~Kv~~Dq~ 39 (126)
..+-|+.|.|-.+.++.-.+.+...++-.+-+|.-
T Consensus 9 sCGkvi~~~w~~y~~rv~~ge~p~~vLDdLGv~RY 43 (63)
T COG1644 9 SCGKVIGHKWEEYKRRVEEGEDPGEVLDDLGVKRY 43 (63)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCcHHH
Confidence 34678999999999999888877777777666664
No 9
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=23.97 E-value=62 Score=20.34 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=13.9
Q ss_pred CCCChHhHHHHhhhch
Q psy16791 57 EGKTVDDGLHEVSHKF 72 (126)
Q Consensus 57 ~g~s~~~~~~~~~~~~ 72 (126)
+|+|.+|+.+++++++
T Consensus 64 ~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 64 SGLTAEEIVQEVEERL 79 (80)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 6999999999998864
No 10
>cd02577 PSTD1 PSTD1: Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.
Probab=22.33 E-value=66 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=23.4
Q ss_pred eeccCCcceehhhhh-HHHHHHHHHhhhc
Q psy16791 92 TLVSEKNRVPYVSVC-SLLWTSFLAYMKY 119 (126)
Q Consensus 92 ~~VP~~~Rvl~~n~v-~~~W~~~LS~~~~ 119 (126)
.-+|...|.+|++.. |..||-.+|..-.
T Consensus 229 ~~iP~~lr~myvhAYQSylfN~~lS~Ri~ 257 (319)
T cd02577 229 LALPKNLRRMFVHAYQSYLFNEILSERIE 257 (319)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999988876 9999999997654
No 11
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=20.05 E-value=65 Score=21.69 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.4
Q ss_pred EechhhhHHHHHhccccCCC
Q psy16791 6 YVAPTLYCWLSIARRKWPKP 25 (126)
Q Consensus 6 ~~gp~~~~wy~~Ld~~~p~~ 25 (126)
.+||+...|.+.--+++|.+
T Consensus 12 LGGPFls~WQ~Ry~~LfPNR 31 (116)
T cd01240 12 LGGPFLSQWQTRYFKLYPNR 31 (116)
T ss_pred hCCHHHHHHHHHHheeCcce
Confidence 47999999999999999953
Done!