Query psy16791
Match_columns 126
No_of_seqs 148 out of 924
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:11:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qho_B E3 ubiquitin-protein li 24.8 61 0.0021 17.8 2.4 19 53-71 17-35 (53)
2 2kii_A Putative uncharacterize 21.8 53 0.0018 22.3 2.3 71 7-77 2-78 (181)
3 1fs1_B SKP1, cyclin A/CDK2-ass 16.8 1.6E+02 0.0056 18.9 3.8 17 52-68 117-133 (141)
4 3bqs_A Uncharacterized protein 13.5 1E+02 0.0034 18.9 1.9 33 41-74 48-80 (93)
5 1szw_A TRNA pseudouridine synt 12.5 52 0.0018 25.5 0.4 29 91-119 205-234 (379)
6 2ksf_A Sensor protein KDPD; me 11.6 60 0.0021 20.2 0.4 18 87-104 62-79 (107)
7 3mab_A Uncharacterized protein 11.2 1.3E+02 0.0045 18.4 1.9 26 46-71 52-77 (93)
8 3c1q_A General secretion pathw 10.8 3E+02 0.01 16.6 4.7 43 33-75 36-78 (123)
9 2kw6_A Cyclin-dependent kinase 9.2 1.8E+02 0.006 16.8 1.8 17 63-79 18-34 (65)
10 1m93_A Serine proteinase inhib 8.6 48 0.0016 18.1 -0.8 28 37-64 14-42 (55)
No 1
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=24.78 E-value=61 Score=17.77 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.7
Q ss_pred HHhhCCCChHhHHHHhhhc
Q psy16791 53 MTLLEGKTVDDGLHEVSHK 71 (126)
Q Consensus 53 ~~~l~g~s~~~~~~~~~~~ 71 (126)
..+|+|+|.+-+..++++.
T Consensus 17 q~VLqgksR~vIirELqrT 35 (53)
T 2qho_B 17 QVVLQGKSRSVIIRELQRT 35 (53)
T ss_dssp HHHSTTCCHHHHHHHHHHT
T ss_pred HHHhcCCcHHHHHHHHHHh
Confidence 4689999988888888875
No 2
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=21.84 E-value=53 Score=22.32 Aligned_cols=71 Identities=7% Similarity=0.038 Sum_probs=48.3
Q ss_pred echhhhHHHHHhccccCCCCchhHHHHHHHhhhhhhhH------HHHHHHHHHHhhCCCChHhHHHHhhhchHHHHh
Q psy16791 7 VAPTLYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPF------AMISFYFGMTLLEGKTVDDGLHEVSHKFWPTYR 77 (126)
Q Consensus 7 ~gp~~~~wy~~Ld~~~p~~~~~~~~~Kv~~Dq~v~~P~------~~~~f~~~~~~l~g~s~~~~~~~~~~~~~~~~~ 77 (126)
.|-+...|..++++.++...|..+..+.-++.-.+.|. -+.-.....+-.-|.|.+++.+.+-+.+...+.
T Consensus 2 ~G~I~~~~~~~v~~~~G~e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~~fG~~~~~~~~ 78 (181)
T 2kii_A 2 KGIIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFNGLA 78 (181)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHcCHHHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 36677888888888887777777777777766666654 233344445556688888888777666655444
No 3
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=16.79 E-value=1.6e+02 Score=18.88 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=12.4
Q ss_pred HHHhhCCCChHhHHHHh
Q psy16791 52 GMTLLEGKTVDDGLHEV 68 (126)
Q Consensus 52 ~~~~l~g~s~~~~~~~~ 68 (126)
....++|+|.+++++.+
T Consensus 117 vA~~ikgkt~eeiR~~f 133 (141)
T 1fs1_B 117 VANMIKGKTPEEIRKTF 133 (141)
T ss_dssp HHHHHTTCCHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHc
Confidence 34567999998887743
No 4
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=13.48 E-value=1e+02 Score=18.85 Aligned_cols=33 Identities=6% Similarity=-0.133 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHhhCCCChHhHHHHhhhchHH
Q psy16791 41 YTPFAMISFYFGMTLLEGKTVDDGLHEVSHKFWP 74 (126)
Q Consensus 41 ~~P~~~~~f~~~~~~l~g~s~~~~~~~~~~~~~~ 74 (126)
..|.. -.++...+.++|+.|.+..++-|+++..
T Consensus 48 ~~~c~-~~L~aL~gAi~G~~w~~l~~~~K~~L~~ 80 (93)
T 3bqs_A 48 SSVCM-SELYALEGAVQGIRWHGLDEAKKIELKK 80 (93)
T ss_dssp TTCCH-HHHHHHHHHHHTSCGGGSCHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHHcCCCHHHCCHHHHHHHHH
Confidence 34444 5677888999999987666666655443
No 5
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=12.45 E-value=52 Score=25.48 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=20.4
Q ss_pred heeccCCcceehhhhh-HHHHHHHHHhhhc
Q psy16791 91 YTLVSEKNRVPYVSVC-SLLWTSFLAYMKY 119 (126)
Q Consensus 91 F~~VP~~~Rvl~~n~v-~~~W~~~LS~~~~ 119 (126)
+.-+|...|.++++.. |..||-.+|..-.
T Consensus 205 ~~~ipr~lr~~yv~AyQS~lfN~~lS~Ri~ 234 (379)
T 1szw_A 205 TPVRDRNKRSFWLSAARSALFNQIVAERLK 234 (379)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999888876 8999999997644
No 6
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=11.58 E-value=60 Score=20.22 Aligned_cols=18 Identities=0% Similarity=0.122 Sum_probs=13.7
Q ss_pred hhhhheeccCCcceehhh
Q psy16791 87 QLINYTLVSEKNRVPYVS 104 (126)
Q Consensus 87 q~inF~~VP~~~Rvl~~n 104 (126)
-..||.|+||++.....+
T Consensus 62 l~~nffF~~P~~sf~i~~ 79 (107)
T 2ksf_A 62 VSFDLFFIAPRGTLAVSD 79 (107)
T ss_dssp HHHHHTTSCSSCTTCSSC
T ss_pred HHHHHhhcCCCccccccC
Confidence 357899999998876544
No 7
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=11.19 E-value=1.3e+02 Score=18.36 Aligned_cols=26 Identities=12% Similarity=-0.041 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhCCCChHhHHHHhhhc
Q psy16791 46 MISFYFGMTLLEGKTVDDGLHEVSHK 71 (126)
Q Consensus 46 ~~~f~~~~~~l~g~s~~~~~~~~~~~ 71 (126)
.-.++...+.++|..+.+..++-|++
T Consensus 52 ~~~L~aL~gAi~G~~w~~l~~~~K~~ 77 (93)
T 3mab_A 52 MSELYALEGAVQGIRWHGLDEAKKIE 77 (93)
T ss_dssp HHHHHHHHHHHHTSCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHCCHHHHHH
Confidence 55677888999999987665555554
No 8
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=10.79 E-value=3e+02 Score=16.59 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=20.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhhCCCChHhHHHHhhhchHHH
Q psy16791 33 KALVEQVTYTPFAMISFYFGMTLLEGKTVDDGLHEVSHKFWPT 75 (126)
Q Consensus 33 Kv~~Dq~v~~P~~~~~f~~~~~~l~g~s~~~~~~~~~~~~~~~ 75 (126)
+++.++.-..++-...--....+-+|+++++..++..+.+.+.
T Consensus 36 ~~~~~~~~~~~l~~~l~~i~~~l~~G~sls~Al~~~~~~fp~~ 78 (123)
T 3c1q_A 36 RAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFDEL 78 (123)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTTCCHHHHHTTCTTTSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHCCCCHHHHHHhccccCCHH
Confidence 4444443323332223333445667777777666544444443
No 9
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=9.22 E-value=1.8e+02 Score=16.76 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=12.8
Q ss_pred hHHHHhhhchHHHHhhc
Q psy16791 63 DGLHEVSHKFWPTYRIG 79 (126)
Q Consensus 63 ~~~~~~~~~~~~~~~~~ 79 (126)
.+.+++.++..||+..+
T Consensus 18 ~VIeEmgkdIrpTYaGs 34 (65)
T 2kw6_A 18 AIIEELGKEIRPTYAGS 34 (65)
T ss_dssp HHHHHHTTTHHHHHTTC
T ss_pred HHHHHHhcccchhhccC
Confidence 56788888888887644
No 10
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=8.59 E-value=48 Score=18.06 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=16.2
Q ss_pred hhhhhhhHHHHHHHHHHH-hhCCCChHhH
Q psy16791 37 EQVTYTPFAMISFYFGMT-LLEGKTVDDG 64 (126)
Q Consensus 37 Dq~v~~P~~~~~f~~~~~-~l~g~s~~~~ 64 (126)
+.++++|+.+..-+.... -.+|++.+|+
T Consensus 14 ~Ni~~SP~Si~~aLaml~~GA~g~T~~ql 42 (55)
T 1m93_A 14 ENVFISPPSISSVLTILYYGANGSTAEQL 42 (55)
T ss_dssp SCEEECHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHhhccchHHHHH
Confidence 367899997766554432 2345544443
Done!