Query psy16791
Match_columns 126
No_of_seqs 148 out of 924
Neff 7.7
Searched_HMMs 13730
Date Fri Aug 16 22:11:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16791.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16791hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ct6a1 c.54.1.2 (A:1-123) PTS 21.1 52 0.0038 19.6 3.6 32 40-71 88-119 (123)
2 d1h2vc1 a.118.1.14 (C:29-290) 17.0 1.3E+02 0.0095 19.8 5.4 70 27-96 36-114 (262)
3 d1k3xa1 a.156.1.2 (A:125-213) 13.0 17 0.0012 20.5 -0.3 19 28-46 26-44 (89)
4 d1khda1 a.46.2.1 (A:12-80) Ant 11.6 1.1E+02 0.0079 15.7 4.5 51 15-66 3-56 (69)
5 d1jqra_ d.218.1.2 (A:) DNA pol 10.8 37 0.0027 21.5 0.8 16 85-100 159-174 (174)
6 d2elca1 a.46.2.1 (A:1-52) Anth 10.4 1.1E+02 0.0079 15.0 4.1 45 18-63 4-51 (52)
7 d1fs1b1 a.157.1.1 (B:86-140) C 9.2 1.3E+02 0.0096 15.1 5.1 14 54-67 40-53 (55)
8 d1r2za1 a.156.1.2 (A:135-228) 9.1 36 0.0026 19.3 0.2 19 28-46 22-40 (94)
9 d1rzhh2 f.23.10.1 (H:11-35) Ph 8.8 30 0.0022 15.0 -0.2 15 78-92 6-20 (26)
10 d1ppjg_ f.23.13.1 (G:) Ubiquin 8.7 1.7E+02 0.012 15.8 3.7 34 20-53 24-60 (75)
No 1
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=21.06 E-value=52 Score=19.58 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHHHhhCCCChHhHHHHhhhc
Q psy16791 40 TYTPFAMISFYFGMTLLEGKTVDDGLHEVSHK 71 (126)
Q Consensus 40 v~~P~~~~~f~~~~~~l~g~s~~~~~~~~~~~ 71 (126)
+-+|+.-..+-+......|.+.+++.+++++-
T Consensus 88 i~~p~tegal~Aa~~a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 88 FNVPLIEGAYTASALLEAGATFEAIKEQLEKM 119 (123)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCHHHHHHHHGGG
T ss_pred EcCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 56677777788888888999999999998764
No 2
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.04 E-value=1.3e+02 Score=19.84 Aligned_cols=70 Identities=10% Similarity=0.197 Sum_probs=45.0
Q ss_pred chhHHHHHHHhhhhhhhHHHHHHHHHHHhhCCCChH---hHHHHhhhchHHHHhhc-c-----ccchHHhhhhheeccC
Q psy16791 27 LSHSLKKALVEQVTYTPFAMISFYFGMTLLEGKTVD---DGLHEVSHKFWPTYRIG-V-----MVWPFAQLINYTLVSE 96 (126)
Q Consensus 27 ~~~~~~Kv~~Dq~v~~P~~~~~f~~~~~~l~g~s~~---~~~~~~~~~~~~~~~~~-~-----~~Wp~~q~inF~~VP~ 96 (126)
.++.+.+.+++...-.|..+..|-+..++++-+..+ ++.+++.+++-..+.++ | .+-=.+++.|+..++.
T Consensus 36 ~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 36 YKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 456777888888888898888877777888766543 45555555665555442 2 1234556666655554
No 3
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=12.98 E-value=17 Score=20.53 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=15.7
Q ss_pred hhHHHHHHHhhhhhhhHHH
Q psy16791 28 SHSLKKALVEQVTYTPFAM 46 (126)
Q Consensus 28 ~~~~~Kv~~Dq~v~~P~~~ 46 (126)
...++++++||-+++-+.+
T Consensus 26 ~~~Ik~~LlDQ~~~aGIGN 44 (89)
T d1k3xa1 26 NRQFAGLLLDQAFLAGLGN 44 (89)
T ss_dssp TSCHHHHTTCTTTSBTCCH
T ss_pred cchHHHHHhcCccccccCc
Confidence 4568899999999998854
No 4
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=11.57 E-value=1.1e+02 Score=15.70 Aligned_cols=51 Identities=8% Similarity=0.182 Sum_probs=35.5
Q ss_pred HHHhccccCCCCchhHHHHHHHhhhh---hhhHHHHHHHHHHHhhCCCChHhHHH
Q psy16791 15 LSIARRKWPKPTLSHSLKKALVEQVT---YTPFAMISFYFGMTLLEGKTVDDGLH 66 (126)
Q Consensus 15 y~~Ld~~~p~~~~~~~~~Kv~~Dq~v---~~P~~~~~f~~~~~~l~g~s~~~~~~ 66 (126)
-..++++..+.++..-=.+-++|++. .++.-++.|+..+. .+|.+.+|+..
T Consensus 3 ~~il~kl~~g~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~-~kg~t~dEi~g 56 (69)
T d1khda1 3 QPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMK-MRGERPEEIAG 56 (69)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHH-HHCCCHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCCCHHHHHH
Confidence 34677777777776666677777776 45667778877764 67888777654
No 5
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}
Probab=10.78 E-value=37 Score=21.48 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.3
Q ss_pred HHhhhhheeccCCcce
Q psy16791 85 FAQLINYTLVSEKNRV 100 (126)
Q Consensus 85 ~~q~inF~~VP~~~Rv 100 (126)
..+.++.-|+||+.|+
T Consensus 159 If~~LGl~yipPe~R~ 174 (174)
T d1jqra_ 159 LIKELGFTYRIPKKRL 174 (174)
T ss_dssp HHHHHTCCCCCGGGCC
T ss_pred HHHHcCCCCCChHhcC
Confidence 4678888999999986
No 6
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=10.42 E-value=1.1e+02 Score=14.99 Aligned_cols=45 Identities=9% Similarity=0.226 Sum_probs=27.0
Q ss_pred hccccCCCCchhHHHHHHHhhhh---hhhHHHHHHHHHHHhhCCCChHh
Q psy16791 18 ARRKWPKPTLSHSLKKALVEQVT---YTPFAMISFYFGMTLLEGKTVDD 63 (126)
Q Consensus 18 Ld~~~p~~~~~~~~~Kv~~Dq~v---~~P~~~~~f~~~~~~l~g~s~~~ 63 (126)
|++...|.++..-=.+-++++.. .+|.-++.|+..+. .+|.+.++
T Consensus 4 l~kl~~g~~Lt~~ea~~~~~~im~G~~~~~qiaafL~al~-~KGeT~~E 51 (52)
T d2elca1 4 VKKAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALS-LRGERPHE 51 (52)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-HHCCCHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCCccc
Confidence 45555666655555555555554 45667777777653 46666554
No 7
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.17 E-value=1.3e+02 Score=15.06 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=10.7
Q ss_pred HhhCCCChHhHHHH
Q psy16791 54 TLLEGKTVDDGLHE 67 (126)
Q Consensus 54 ~~l~g~s~~~~~~~ 67 (126)
..++|+|.+|+++.
T Consensus 40 ~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 40 NMIKGKTPEEIRKT 53 (55)
T ss_dssp HHHTTCCHHHHHHH
T ss_pred HHHcCCCHHHHHHH
Confidence 45789998887764
No 8
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.08 E-value=36 Score=19.32 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.4
Q ss_pred hhHHHHHHHhhhhhhhHHH
Q psy16791 28 SHSLKKALVEQVTYTPFAM 46 (126)
Q Consensus 28 ~~~~~Kv~~Dq~v~~P~~~ 46 (126)
+..++.+++||-+.+-+.+
T Consensus 22 ~~~ik~~LlDQ~~~aGiGN 40 (94)
T d1r2za1 22 KRSVKALLLDQTVVAGFGN 40 (94)
T ss_dssp CSBHHHHHHCTTTSSSCCH
T ss_pred CccHHHHHHhccccCCccc
Confidence 3568899999999988743
No 9
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.79 E-value=30 Score=14.97 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=9.2
Q ss_pred hccccchHHhhhhhe
Q psy16791 78 IGVMVWPFAQLINYT 92 (126)
Q Consensus 78 ~~~~~Wp~~q~inF~ 92 (126)
+-|.+|.+...+-|+
T Consensus 6 aiw~fw~ffalli~y 20 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777776666553
No 10
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.67 E-value=1.7e+02 Score=15.85 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=23.1
Q ss_pred cccCC---CCchhHHHHHHHhhhhhhhHHHHHHHHHH
Q psy16791 20 RKWPK---PTLSHSLKKALVEQVTYTPFAMISFYFGM 53 (126)
Q Consensus 20 ~~~p~---~~~~~~~~Kv~~Dq~v~~P~~~~~f~~~~ 53 (126)
|-+++ +...++++++--+-+..+|-++..|+++.
T Consensus 24 rafag~~~~gi~N~~RR~~~~~l~v~PPfi~~Y~iy~ 60 (75)
T d1ppjg_ 24 RAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYT 60 (75)
T ss_dssp CSSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHhcccHHHHHhHHhceEEcCHHHHHHHHHH
Confidence 44553 45667888888666667888887776663
Done!