RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16791
         (126 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 0.79
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 19/97 (19%)

Query: 31  LKKALVEQVTYTPFAMISFYFGMTLLEGKT-------VDDGLHEVSHKFWPTYRIGVMVW 83
           L K  ++ +  +  A+         L  K        V++ L          Y+     +
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-------INYK-----F 93

Query: 84  PFAQLINYTLVSEKNRVPYVSVCSLLWTSFLAYMKYN 120
             + +             Y+     L+     + KYN
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130



 Score = 26.0 bits (56), Expect = 5.1
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 14/60 (23%)

Query: 23  PKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLEGKTV-------DDGLHEV--SHKFW 73
            +      L++AL+E     P   +    G+ L  GKT           +        FW
Sbjct: 132 SRLQPYLKLRQALLEL---RPAKNVLID-GV-LGSGKTWVALDVCLSYKVQCKMDFKIFW 186


>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
           myristol group, icosahedral virus; HET: MYR; 3.30A
           {Grass carp reovirus} PDB: 3k1q_C 3k1q_B
          Length = 1214

 Score = 26.3 bits (57), Expect = 3.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 8   APTLYCWLSIARRKWPKPT 26
           AP L  +    R  WP+P+
Sbjct: 636 APLLRAFAEHIRANWPQPS 654


>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
           methyltransferase, guanylyltransferase, zinc finger,
           icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
           PDB: 2cse_V
          Length = 1275

 Score = 26.4 bits (57), Expect = 3.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 8   APTLYCWLSIARRKWPKPT 26
           AP L  W  I  R WP P+
Sbjct: 699 APILRQWAEIIHRYWPNPS 717


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 8.7
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 22/113 (19%)

Query: 4   TFYV----APTLYCWLSI-ARRKWPKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLEG 58
           +F+V    A T+  ++ +     +P  +L  S+ +  +E     P  M+S    +T    
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-NLTQ--- 346

Query: 59  KTVDDGLHEVSHKFWPTYRIGVMVWPFAQLINYTLVSEKNRV---PYVSVCSL 108
           + V D +++ +       ++ +       L+N      KN V   P  S+  L
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEI------SLVN----GAKNLVVSGPPQSLYGL 389


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,945,435
Number of extensions: 98837
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 7
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)