RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16791
         (126 letters)



>d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat
           proteins {Mengovirus [TaxId: 12107]}
          Length = 268

 Score = 23.4 bits (50), Expect = 9.5
 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 99  RVPYVSVCSLLWTSFLAYMKYNNF 122
            VPY S  S+L   +  Y  +  F
Sbjct: 187 VVPYNSPLSVLPAVW--YNGHKRF 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 491,657
Number of extensions: 20276
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 5
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.6 bits)