BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16796
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31264|HMPB_DROME Homeotic protein proboscipedia OS=Drosophila melanogaster GN=pb
PE=2 SV=2
Length = 782
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 54/69 (78%)
Query: 53 TRTEEMNERKENINKKKEEEKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIA 112
T + N + N E +NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIA
Sbjct: 173 TSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIA 232
Query: 113 ASLDLTERQ 121
ASLDLTERQ
Sbjct: 233 ASLDLTERQ 241
>sp|P14652|HXB2_HUMAN Homeobox protein Hox-B2 OS=Homo sapiens GN=HOXB2 PE=1 SV=1
Length = 356
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 44/51 (86%)
Query: 71 EEKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
E G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 136 PEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 186
>sp|O42365|HXA2B_DANRE Homeobox protein Hox-A2b OS=Danio rerio GN=hoxa2b PE=2 SV=2
Length = 363
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 45/51 (88%)
Query: 71 EEKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ +G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 126 SDGGSGATRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 176
>sp|O42367|HXB2A_DANRE Homeobox protein Hox-B2a OS=Danio rerio GN=hoxb2a PE=2 SV=2
Length = 390
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/43 (95%), Positives = 42/43 (97%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 159 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 201
>sp|Q0VCS4|HXA2_BOVIN Homeobox protein Hox-A2 OS=Bos taurus GN=HOXA2 PE=2 SV=1
Length = 372
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 44/50 (88%)
Query: 72 EKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 133 DGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 182
>sp|Q6IEI0|HXB2A_TAKRU Homeobox protein Hox-B2a OS=Takifugu rubripes GN=hoxb2a PE=3 SV=1
Length = 415
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/43 (95%), Positives = 42/43 (97%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 174 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 216
>sp|P0C1T1|HXB2_MOUSE Homeobox protein Hox-B2 OS=Mus musculus GN=Hoxb2 PE=2 SV=1
Length = 354
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/53 (83%), Positives = 45/53 (84%), Gaps = 7/53 (13%)
Query: 76 GLP-------RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
GLP RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 132 GLPECGGSGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 184
>sp|P31245|HXA2_MOUSE Homeobox protein Hox-A2 OS=Mus musculus GN=Hoxa2 PE=2 SV=1
Length = 372
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 44/50 (88%)
Query: 72 EKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 133 DGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 182
>sp|O43364|HXA2_HUMAN Homeobox protein Hox-A2 OS=Homo sapiens GN=HOXA2 PE=1 SV=1
Length = 376
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 44/50 (88%)
Query: 72 EKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 137 DGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 186
>sp|Q9IA20|HXA2_HETFR Homeobox protein Hox-A2 OS=Heterodontus francisci GN=HOXA2 PE=3
SV=1
Length = 363
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 44/51 (86%)
Query: 71 EEKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 123 PDNTGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 173
>sp|P31246|HXA2_RAT Homeobox protein Hox-A2 OS=Rattus norvegicus GN=Hoxa2 PE=2 SV=1
Length = 372
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 44/50 (88%)
Query: 72 EKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 133 DGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 182
>sp|A9L937|HXA2_PAPAN Homeobox protein Hox-A2 OS=Papio anubis GN=HOXA2 PE=3 SV=1
Length = 377
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 44/50 (88%)
Query: 72 EKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 138 DGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 187
>sp|B0VXK3|HXA2_CALJA Homeobox protein Hox-A2 OS=Callithrix jacchus GN=HOXA2 PE=3 SV=1
Length = 375
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 44/50 (88%)
Query: 72 EKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 136 DGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 185
>sp|Q1KL11|HXA2A_TAKRU Homeobox protein Hox-A2a OS=Takifugu rubripes GN=hoxa2a PE=3 SV=1
Length = 363
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/43 (95%), Positives = 42/43 (97%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 138 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 180
>sp|Q08727|HXA2_CHICK Homeobox protein Hox-A2 OS=Gallus gallus GN=HOXA2 PE=2 SV=1
Length = 375
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 45/51 (88%)
Query: 71 EEKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ +G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ
Sbjct: 133 PDSGSGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 183
>sp|Q1KKZ2|HXA2B_TAKRU Homeobox protein Hox-A2b OS=Takifugu rubripes GN=hoxa2b PE=3 SV=1
Length = 300
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 59/97 (60%), Gaps = 25/97 (25%)
Query: 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTE--------------- 119
G RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTE
Sbjct: 85 GGTSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTEKQVKVWFQNRRMKHK 144
Query: 120 RQSDC--------KYYVAKEEEEGEDEEEEEEGEEEA 148
RQ+ C KY A ++E EDE E+E G A
Sbjct: 145 RQTHCKENRDSEGKY--ACLDDEPEDEFEQEAGGSVA 179
>sp|P31261|HXA2_NOTVI Homeobox protein Hox-A2 (Fragment) OS=Notophthalmus viridescens
PE=3 SV=1
Length = 90
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/49 (83%), Positives = 43/49 (87%)
Query: 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKY 126
RRLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ +
Sbjct: 2 SRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWF 50
>sp|P09638|HXB2_SALSA Homeobox protein Hox-B2 (Fragment) OS=Salmo salar GN=hoxb2 PE=3
SV=1
Length = 60
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/49 (83%), Positives = 43/49 (87%)
Query: 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKY 126
P RLRTAYTNTQLLELEKEFHFNKYLCRPRR+EIAA LDLTERQ +
Sbjct: 1 PGRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKLWF 49
>sp|P50901|HOX3_BRAFL Homeobox protein HOX3 OS=Branchiostoma floridae PE=2 SV=1
Length = 411
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 40/43 (93%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+AA L+LTERQ
Sbjct: 136 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAAMLNLTERQ 178
>sp|P31249|HXD3_HUMAN Homeobox protein Hox-D3 OS=Homo sapiens GN=HOXD3 PE=1 SV=3
Length = 432
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R+RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 195 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 237
>sp|P02831|HXA3_MOUSE Homeobox protein Hox-A3 OS=Mus musculus GN=Hoxa3 PE=1 SV=2
Length = 443
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 193 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 235
>sp|O42370|HXD3A_DANRE Homeobox protein Hox-D3a OS=Danio rerio GN=hoxd3a PE=2 SV=2
Length = 396
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R+RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 162 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 204
>sp|Q3V5Z9|HXD3_ORYLA Homeobox protein Hox-D3 OS=Oryzias latipes GN=hoxd3a PE=3 SV=1
Length = 395
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R+RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 161 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 203
>sp|A1L2P5|HXD3_XENLA Homeobox protein Hox-D3 OS=Xenopus laevis GN=hoxd3 PE=2 SV=1
Length = 413
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R+RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 179 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 221
>sp|Q08DG7|HXA3_BOVIN Homeobox protein Hox-A3 OS=Bos taurus GN=HOXA3 PE=2 SV=1
Length = 442
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 234
>sp|P09027|HXD3_MOUSE Homeobox protein Hox-D3 OS=Mus musculus GN=Hoxd3 PE=2 SV=4
Length = 433
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R+RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 196 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 238
>sp|Q1KKS7|HXD3A_TAKRU Homeobox protein Hox-D3a OS=Takifugu rubripes GN=hoxd3a PE=3 SV=1
Length = 408
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 40/43 (93%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R+RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 176 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 218
>sp|O43365|HXA3_HUMAN Homeobox protein Hox-A3 OS=Homo sapiens GN=HOXA3 PE=2 SV=1
Length = 443
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 234
>sp|O93353|HXA3_CHICK Homeobox protein Hox-A3 OS=Gallus gallus GN=HOXA3 PE=2 SV=2
Length = 413
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 10/86 (11%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDC-------KYYVAKE 131
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ KY K+
Sbjct: 174 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY---KK 230
Query: 132 EEEGEDEEEEEEGEEEAKEQEQKQVG 157
+++G+ G+ ++ G
Sbjct: 231 DQKGKGMMTSSGGQSPSRSPVPPAAG 256
>sp|Q1KL12|HXA3A_TAKRU Homeobox protein Hox-A3a OS=Takifugu rubripes GN=hoxa3a PE=3 SV=1
Length = 417
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 171 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 213
>sp|Q9IA21|HXA3_HETFR Homeobox protein Hox-A3 OS=Heterodontus francisci GN=HOXA3 PE=3
SV=1
Length = 410
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 169 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 211
>sp|Q8AWZ2|HXA3A_DANRE Homeobox protein Hox-A3a OS=Danio rerio GN=hoxa3a PE=2 SV=1
Length = 410
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 164 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 206
>sp|Q1KKX7|HXB3A_TAKRU Homeobox protein Hox-B3a OS=Takifugu rubripes GN=hoxb3a PE=3 SV=1
Length = 474
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+L+ERQ
Sbjct: 213 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 255
>sp|P09026|HXB3_MOUSE Homeobox protein Hox-B3 OS=Mus musculus GN=Hoxb3 PE=2 SV=4
Length = 433
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+L+ERQ
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 234
>sp|P14651|HXB3_HUMAN Homeobox protein Hox-B3 OS=Homo sapiens GN=HOXB3 PE=1 SV=2
Length = 431
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+L+ERQ
Sbjct: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 231
>sp|A8DT10|HXD3_HAPBU Homeobox protein Hox-D3 OS=Haplochromis burtoni GN=hoxd3a PE=3 SV=1
Length = 404
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R++TAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+LTERQ
Sbjct: 170 KRVKTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 212
>sp|O42368|HXB3A_DANRE Homeobox protein Hox-B3a OS=Danio rerio GN=hoxb3a PE=2 SV=3
Length = 417
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+L+ERQ
Sbjct: 181 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 223
>sp|P23682|HXB3_CHICK Homeobox protein Hox-B3 OS=Gallus gallus GN=HOXB3 PE=2 SV=2
Length = 399
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+L+ERQ
Sbjct: 160 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 202
>sp|P31247|HXB3_XENLA Homeobox protein Hox-B3 (Fragment) OS=Xenopus laevis GN=hoxb3 PE=3
SV=1
Length = 60
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT+ QL+ELEKEFHFN+YLCRPRR+E+A L+L+ERQ
Sbjct: 2 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 44
>sp|A2T6H5|HXB1_MACNE Homeobox protein Hox-B1 OS=Macaca nemestrina GN=HOXB1 PE=3 SV=1
Length = 304
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 37 EEEEEKEEEEEEEEENTRTEEMNERKENINK-KKEEEKKNGLPRRLRTAYTNTQLLELEK 95
E++E E RT + + K N K K E G P LRT +T QL ELEK
Sbjct: 164 SEDKEAPCPSEPNTPTARTFDWMKVKRNPPKTGKVSEPGLGSPSGLRTNFTTRQLTELEK 223
Query: 96 EFHFNKYLCRPRRIEIAASLDLTERQ 121
EFHFNKYL R RR+EIAA+L+L E Q
Sbjct: 224 EFHFNKYLSRARRVEIAATLELNETQ 249
>sp|A2D649|HXB1_MACMU Homeobox protein Hox-B1 OS=Macaca mulatta GN=HOXB1 PE=3 SV=1
Length = 304
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 37 EEEEEKEEEEEEEEENTRTEEMNERKENINK-KKEEEKKNGLPRRLRTAYTNTQLLELEK 95
E++E E RT + + K N K K E G P LRT +T QL ELEK
Sbjct: 164 SEDKEAPCPSEPNTPTARTFDWMKVKRNPPKTGKVSEPGLGSPSGLRTNFTTRQLTELEK 223
Query: 96 EFHFNKYLCRPRRIEIAASLDLTERQ 121
EFHFNKYL R RR+EIAA+L+L E Q
Sbjct: 224 EFHFNKYLSRARRVEIAATLELNETQ 249
>sp|A2D4R4|HXB1_ATEGE Homeobox protein Hox-B1 OS=Ateles geoffroyi GN=HOXB1 PE=3 SV=1
Length = 304
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 37 EEEEEKEEEEEEEEENTRTEEMNERKENINK-KKEEEKKNGLPRRLRTAYTNTQLLELEK 95
E++E E RT + + K N K K E G P LRT +T QL ELEK
Sbjct: 164 SEDKEAPCPSEPNTPTARTFDWMKVKRNPPKTGKVSEPGLGSPSGLRTNFTTRQLTELEK 223
Query: 96 EFHFNKYLCRPRRIEIAASLDLTERQ 121
EFHFNKYL R RR+EIAA+L+L E Q
Sbjct: 224 EFHFNKYLSRARRVEIAATLELNETQ 249
>sp|A2T6Z0|HXB1_PANTR Homeobox protein Hox-B1 OS=Pan troglodytes GN=HOXB1 PE=3 SV=1
Length = 301
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 37 EEEEEKEEEEEEEEENTRTEEMNERKENINK-KKEEEKKNGLPRRLRTAYTNTQLLELEK 95
E++E E RT + + K N K K E G P LRT +T QL ELEK
Sbjct: 161 SEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEK 220
Query: 96 EFHFNKYLCRPRRIEIAASLDLTERQ 121
EFHFNKYL R RR+EIAA+L+L E Q
Sbjct: 221 EFHFNKYLSRARRVEIAATLELNETQ 246
>sp|P14653|HXB1_HUMAN Homeobox protein Hox-B1 OS=Homo sapiens GN=HOXB1 PE=1 SV=2
Length = 301
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 37 EEEEEKEEEEEEEEENTRTEEMNERKENINK-KKEEEKKNGLPRRLRTAYTNTQLLELEK 95
E++E E RT + + K N K K E G P LRT +T QL ELEK
Sbjct: 161 SEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEK 220
Query: 96 EFHFNKYLCRPRRIEIAASLDLTERQ 121
EFHFNKYL R RR+EIAA+L+L E Q
Sbjct: 221 EFHFNKYLSRARRVEIAATLELNETQ 246
>sp|A1YG01|HXB1_PANPA Homeobox protein Hox-B1 OS=Pan paniscus GN=HOXB1 PE=3 SV=1
Length = 301
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 37 EEEEEKEEEEEEEEENTRTEEMNERKENINK-KKEEEKKNGLPRRLRTAYTNTQLLELEK 95
E++E E RT + + K N K K E G P LRT +T QL ELEK
Sbjct: 161 SEDKETPCPSEPNTPTXRTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEK 220
Query: 96 EFHFNKYLCRPRRIEIAASLDLTERQ 121
EFHFNKYL R RR+EIAA+L+L E Q
Sbjct: 221 EFHFNKYLSRARRVEIAATLELNETQ 246
>sp|P17919|HXB1_MOUSE Homeobox protein Hox-B1 OS=Mus musculus GN=Hoxb1 PE=2 SV=1
Length = 297
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 37 EEEEEKEEEEEEEEENTRTEEMNERKENINK-KKEEEKKNGLPRRLRTAYTNTQLLELEK 95
E++E E RT + + K N K K E G P LRT +T QL ELEK
Sbjct: 157 SEDKESPCSSEPSTLTPRTFDWMKVKRNPPKTAKVSELGLGAPGGLRTNFTTRQLTELEK 216
Query: 96 EFHFNKYLCRPRRIEIAASLDLTERQ 121
EFHFNKYL R RR+EIAA+L+L E Q
Sbjct: 217 EFHFNKYLSRARRVEIAATLELNETQ 242
>sp|A2T7J2|HXB1_PONPY Homeobox protein Hox-B1 OS=Pongo pygmaeus GN=HOXB1 PE=3 SV=1
Length = 301
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 37 EEEEEKEEEEEEEEENTRTEEMNERKENINK-KKEEEKKNGLPRRLRTAYTNTQLLELEK 95
E++E E RT + + K N K K E G P LRT +T QL ELEK
Sbjct: 161 SEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSELGLGSPSGLRTNFTTRQLTELEK 220
Query: 96 EFHFNKYLCRPRRIEIAASLDLTERQ 121
EFHFNKYL R RR+EIAA+L+L E Q
Sbjct: 221 EFHFNKYLSRARRVEIAATLELNETQ 246
>sp|P14837|PDX1_XENLA Pancreas/duodenum homeobox protein 1 OS=Xenopus laevis GN=pdx1 PE=2
SV=2
Length = 271
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEGEDE 138
+R RTAYT QLLELEKEF FNKY+ RPRR+E+A L+LTER K + + + E
Sbjct: 148 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERH--IKIWFQNRRMKWKKE 205
Query: 139 EEEEEGEEEAKEQE 152
E+++ G EQ+
Sbjct: 206 EDKKRGRGSDPEQD 219
>sp|P17138|HMA2_HELTR Homeobox protein HTR-A2 (Fragment) OS=Helobdella triserialis PE=4
SV=1
Length = 60
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 39/48 (81%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKY 126
+R RTAY+ +QL ELEKEFHF+KY+ RPRR+E+A+SL+LTER +
Sbjct: 2 KRTRTAYSRSQLFELEKEFHFDKYISRPRRVELASSLNLTERHIKIWF 49
>sp|P70118|PDX1_MESAU Pancreas/duodenum homeobox protein 1 OS=Mesocricetus auratus
GN=PDX1 PE=1 SV=1
Length = 283
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RTAYT QLLELEKEF FNKY+ RPRR+E+A L+LTER
Sbjct: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERH 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.299 0.122 0.308
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,105,973
Number of Sequences: 539616
Number of extensions: 3727639
Number of successful extensions: 284451
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5536
Number of HSP's successfully gapped in prelim test: 2133
Number of HSP's that attempted gapping in prelim test: 69155
Number of HSP's gapped (non-prelim): 90155
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 56 (26.2 bits)