Query psy16796
Match_columns 166
No_of_seqs 172 out of 1296
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:18:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.7 1E-18 3.5E-23 121.5 3.9 59 75-133 14-76 (80)
2 1wh7_A ZF-HD homeobox family p 99.7 1.5E-18 5.2E-23 120.8 3.8 59 74-133 13-76 (80)
3 2dmt_A Homeobox protein BARH-l 99.7 2.1E-18 7.2E-23 119.4 3.7 60 74-133 13-72 (80)
4 2cra_A Homeobox protein HOX-B1 99.7 3.3E-18 1.1E-22 115.5 4.1 61 75-135 4-64 (70)
5 2djn_A Homeobox protein DLX-5; 99.7 3.4E-18 1.2E-22 115.5 4.0 59 75-133 4-62 (70)
6 2kt0_A Nanog, homeobox protein 99.7 3.1E-18 1.1E-22 119.2 3.6 62 74-135 18-79 (84)
7 2h1k_A IPF-1, pancreatic and d 99.7 1.3E-18 4.3E-23 115.3 1.1 58 77-134 2-59 (63)
8 2vi6_A Homeobox protein nanog; 99.7 2.2E-18 7.7E-23 113.7 2.2 58 77-134 2-59 (62)
9 1nk2_P Homeobox protein VND; h 99.7 2.7E-18 9.2E-23 118.0 2.6 61 74-134 5-65 (77)
10 2da2_A Alpha-fetoprotein enhan 99.7 6.4E-18 2.2E-22 113.9 3.7 60 75-134 4-63 (70)
11 2dmu_A Homeobox protein goosec 99.7 5E-18 1.7E-22 114.5 3.0 57 76-132 5-61 (70)
12 2hdd_A Protein (engrailed home 99.7 3.1E-18 1.1E-22 112.6 1.8 56 78-133 3-58 (61)
13 3a01_A Homeodomain-containing 99.7 2.5E-18 8.7E-23 122.5 1.2 62 74-135 13-74 (93)
14 3rkq_A Homeobox protein NKX-2. 99.7 4.9E-18 1.7E-22 110.0 2.2 56 78-133 2-57 (58)
15 1bw5_A ISL-1HD, insulin gene e 99.7 6.9E-18 2.4E-22 112.6 3.0 59 77-135 2-60 (66)
16 2cue_A Paired box protein PAX6 99.7 5.3E-18 1.8E-22 117.4 2.5 60 75-134 4-63 (80)
17 2l7z_A Homeobox protein HOX-A1 99.7 9E-18 3.1E-22 114.4 3.6 62 75-136 4-65 (73)
18 1ig7_A Homeotic protein MSX-1; 99.7 4.9E-18 1.7E-22 110.4 2.1 55 79-133 1-55 (58)
19 2da1_A Alpha-fetoprotein enhan 99.7 5.2E-18 1.8E-22 114.3 2.2 60 75-134 4-63 (70)
20 2m0c_A Homeobox protein arista 99.7 7.6E-18 2.6E-22 114.6 3.0 60 75-134 6-65 (75)
21 2dms_A Homeobox protein OTX2; 99.7 8.1E-18 2.8E-22 116.3 3.2 59 75-133 4-62 (80)
22 1wi3_A DNA-binding protein SAT 99.7 7.8E-18 2.7E-22 114.0 2.9 57 75-131 4-61 (71)
23 2da3_A Alpha-fetoprotein enhan 99.7 6.4E-18 2.2E-22 116.4 2.5 61 74-134 13-73 (80)
24 1akh_A Protein (mating-type pr 99.7 4.5E-18 1.6E-22 111.6 1.6 58 76-133 3-60 (61)
25 2dmq_A LIM/homeobox protein LH 99.7 7.8E-18 2.7E-22 116.2 2.6 59 75-133 4-62 (80)
26 1puf_A HOX-1.7, homeobox prote 99.7 9E-18 3.1E-22 115.4 2.8 60 75-134 10-69 (77)
27 1zq3_P PRD-4, homeotic bicoid 99.7 6.9E-18 2.4E-22 113.4 2.0 56 78-133 2-57 (68)
28 1ahd_P Antennapedia protein mu 99.7 2.9E-18 9.8E-23 115.4 -0.4 56 78-133 2-57 (68)
29 2e1o_A Homeobox protein PRH; D 99.7 1.5E-17 5E-22 112.3 2.9 57 76-132 5-61 (70)
30 1jgg_A Segmentation protein EV 99.7 9.8E-18 3.4E-22 109.9 1.8 55 79-133 2-56 (60)
31 1b8i_A Ultrabithorax, protein 99.7 1E-17 3.6E-22 116.3 1.9 61 75-135 17-77 (81)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 1.3E-17 4.5E-22 112.1 2.2 56 78-133 2-57 (68)
33 2k40_A Homeobox expressed in E 99.7 1.3E-17 4.6E-22 111.5 2.0 59 78-136 1-59 (67)
34 1fjl_A Paired protein; DNA-bin 99.7 2E-17 7E-22 114.5 2.5 58 75-132 15-72 (81)
35 1b72_A Protein (homeobox prote 99.7 1.7E-17 5.9E-22 118.7 2.2 58 76-133 32-89 (97)
36 1yz8_P Pituitary homeobox 2; D 99.7 7.4E-18 2.5E-22 113.2 0.1 56 77-132 2-57 (68)
37 2da4_A Hypothetical protein DK 99.7 7.6E-18 2.6E-22 116.5 0.2 59 75-133 5-67 (80)
38 2r5y_A Homeotic protein sex co 99.7 2.2E-17 7.6E-22 116.1 2.0 60 75-134 25-84 (88)
39 3nar_A ZHX1, zinc fingers and 99.6 3.7E-17 1.3E-21 116.8 2.2 61 75-135 22-82 (96)
40 2ly9_A Zinc fingers and homeob 99.6 7.3E-17 2.5E-21 109.8 3.0 59 77-135 5-63 (74)
41 3a02_A Homeobox protein arista 99.6 4.1E-17 1.4E-21 106.9 1.6 54 81-134 2-55 (60)
42 2dn0_A Zinc fingers and homeob 99.6 9.1E-17 3.1E-21 110.1 2.6 58 78-135 8-65 (76)
43 2hi3_A Homeodomain-only protei 99.6 9.8E-17 3.3E-21 109.1 2.5 55 79-133 3-58 (73)
44 1uhs_A HOP, homeodomain only p 99.6 9E-17 3.1E-21 108.9 2.3 55 79-133 2-57 (72)
45 2da5_A Zinc fingers and homeob 99.6 1.2E-16 4.2E-21 109.3 2.8 54 80-133 9-62 (75)
46 2ecc_A Homeobox and leucine zi 99.6 1.5E-16 5E-21 110.0 2.9 53 80-132 5-57 (76)
47 1puf_B PRE-B-cell leukemia tra 99.6 9.1E-17 3.1E-21 109.1 1.8 59 78-136 1-62 (73)
48 3a03_A T-cell leukemia homeobo 99.6 7.8E-17 2.7E-21 104.4 1.3 51 83-133 2-52 (56)
49 1du6_A PBX1, homeobox protein 99.6 1.7E-16 5.8E-21 105.1 2.9 57 78-134 3-62 (64)
50 1x2n_A Homeobox protein pknox1 99.6 2.6E-16 8.8E-21 106.8 2.8 59 75-133 4-65 (73)
51 1au7_A Protein PIT-1, GHF-1; c 99.6 3E-16 1E-20 120.1 2.8 60 75-134 84-143 (146)
52 1lfb_A Liver transcription fac 99.6 2.5E-16 8.5E-21 113.8 2.2 63 75-137 6-89 (99)
53 2cuf_A FLJ21616 protein; homeo 99.6 2.1E-16 7.3E-21 112.6 1.7 59 75-133 4-77 (95)
54 1e3o_C Octamer-binding transcr 99.6 3.5E-16 1.2E-20 121.3 2.5 59 76-134 99-157 (160)
55 3d1n_I POU domain, class 6, tr 99.6 6.6E-16 2.2E-20 118.5 3.3 60 75-134 90-149 (151)
56 2e19_A Transcription factor 8; 99.6 5.3E-16 1.8E-20 103.6 2.2 53 82-134 7-59 (64)
57 1b72_B Protein (PBX1); homeodo 99.6 5E-16 1.7E-20 108.6 2.0 59 79-137 2-63 (87)
58 2cqx_A LAG1 longevity assuranc 99.6 3E-16 1E-20 107.0 0.4 57 78-134 8-65 (72)
59 2da6_A Hepatocyte nuclear fact 99.6 7.7E-16 2.6E-20 111.8 2.4 59 75-133 3-82 (102)
60 2ecb_A Zinc fingers and homeob 99.6 8.4E-16 2.9E-20 109.1 2.5 50 84-133 17-66 (89)
61 1mnm_C Protein (MAT alpha-2 tr 99.6 9.1E-16 3.1E-20 107.6 2.5 57 77-133 26-85 (87)
62 2dmn_A Homeobox protein TGIF2L 99.6 1.1E-15 3.7E-20 106.6 2.7 59 75-133 4-65 (83)
63 2xsd_C POU domain, class 3, tr 99.6 6.1E-16 2.1E-20 120.6 1.5 61 75-135 96-156 (164)
64 1k61_A Mating-type protein alp 99.5 1.2E-15 4E-20 99.8 1.9 52 82-133 2-56 (60)
65 2l9r_A Homeobox protein NKX-3. 99.5 1.3E-15 4.4E-20 103.3 2.0 55 82-136 8-62 (69)
66 2d5v_A Hepatocyte nuclear fact 99.5 1.5E-15 5.1E-20 117.7 2.5 61 75-135 94-154 (164)
67 2dmp_A Zinc fingers and homeob 99.5 2.2E-15 7.6E-20 106.4 3.0 54 83-136 18-71 (89)
68 3l1p_A POU domain, class 5, tr 99.5 1.4E-15 4.9E-20 117.3 1.7 59 76-134 94-152 (155)
69 1le8_B Mating-type protein alp 99.5 2.4E-15 8.3E-20 104.7 2.4 56 80-135 4-62 (83)
70 3nau_A Zinc fingers and homeob 99.5 2.7E-15 9.1E-20 101.0 1.4 47 86-132 12-58 (66)
71 1x2m_A LAG1 longevity assuranc 99.5 3.3E-15 1.1E-19 100.1 1.0 48 87-134 9-57 (64)
72 1ic8_A Hepatocyte nuclear fact 99.4 1.6E-14 5.4E-19 115.6 -0.7 60 75-134 112-192 (194)
73 3k2a_A Homeobox protein MEIS2; 99.4 1.1E-13 3.9E-18 92.8 1.4 53 83-135 3-58 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 1.5E-13 5.2E-18 111.8 2.1 60 74-133 138-218 (221)
75 2da7_A Zinc finger homeobox pr 99.3 8.6E-13 2.9E-17 89.6 1.2 45 87-131 14-58 (71)
76 1mh3_A Maltose binding-A1 home 99.2 2.5E-12 8.5E-17 109.3 1.0 55 79-133 366-420 (421)
77 2lk2_A Homeobox protein TGIF1; 99.0 6.9E-11 2.4E-15 83.7 1.6 51 83-133 10-63 (89)
78 2nzz_A Penetratin conjugated G 97.9 2.6E-06 8.9E-11 50.8 0.6 20 120-139 1-20 (37)
79 2ys9_A Homeobox and leucine zi 90.2 0.087 3E-06 35.2 1.0 40 89-128 17-56 (70)
80 2rgt_A Fusion of LIM/homeobox 71.4 0.075 2.6E-06 40.1 -5.9 30 77-106 135-164 (169)
81 2elh_A CG11849-PA, LD40883P; s 51.5 10 0.00035 24.9 2.7 45 79-128 17-61 (87)
82 2glo_A Brinker CG9653-PA; prot 46.6 8 0.00027 23.5 1.4 46 82-128 3-48 (59)
83 3i5g_B Myosin regulatory light 38.1 66 0.0022 22.7 5.5 41 81-121 6-51 (153)
84 1hlv_A CENP-B, major centromer 34.8 26 0.0009 24.1 2.7 45 81-128 4-48 (131)
85 1tc3_C Protein (TC3 transposas 30.2 24 0.00084 19.2 1.6 40 84-128 5-44 (51)
86 2jn6_A Protein CGL2762, transp 26.3 40 0.0014 22.0 2.4 43 82-128 3-46 (97)
87 1jko_C HIN recombinase, DNA-in 24.3 35 0.0012 18.9 1.6 39 85-128 6-44 (52)
88 1iuf_A Centromere ABP1 protein 22.6 69 0.0023 22.9 3.2 47 79-128 6-59 (144)
89 2lv7_A Calcium-binding protein 20.3 1.2E+02 0.0041 20.0 3.9 48 81-128 26-80 (100)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.73 E-value=1e-18 Score=121.55 Aligned_cols=59 Identities=12% Similarity=-0.000 Sum_probs=54.8
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHF----NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~----~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
.++++|.||.||..|+..|+..|.. ++||+...|..||..|||++++|+|||||+|.|-
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~ 76 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSG 76 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCC
Confidence 4567889999999999999999999 9999999999999999999999999999976653
No 2
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.73 E-value=1.5e-18 Score=120.82 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=54.1
Q ss_pred cCCCCCCcccCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 74 KNGLPRRLRTAYTNTQLLELEKEFHF-----NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 74 ~~~k~rr~Rt~fT~~Ql~~Le~~F~~-----~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
...+++|.||.||..|+..|+ .|.. ++||+...|..||..|||++++|+|||||+|.|-
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~ 76 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSG 76 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCC
Confidence 345678899999999999999 8999 9999999999999999999999999999977653
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-18 Score=119.37 Aligned_cols=60 Identities=40% Similarity=0.522 Sum_probs=55.1
Q ss_pred cCCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 74 KNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 74 ~~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
..++.++.||.||..|+..|+..|..++||+...|..||..|||++.+|+|||||+|.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 72 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 72 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHh
Confidence 456778899999999999999999999999999999999999999999999999955443
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.3e-18 Score=115.49 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=55.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
.+..++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 4567889999999999999999999999999999999999999999999999996655443
No 5
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-18 Score=115.45 Aligned_cols=59 Identities=34% Similarity=0.482 Sum_probs=54.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
..+.++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 62 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhh
Confidence 45678899999999999999999999999999999999999999999999999955443
No 6
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-18 Score=119.22 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=56.3
Q ss_pred cCCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 74 KNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 74 ~~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
...+.++.||.||..|+..|+..|..++||+...|..||..|||++.+|+|||||+|.+...
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999996665443
No 7
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.71 E-value=1.3e-18 Score=115.33 Aligned_cols=58 Identities=52% Similarity=0.749 Sum_probs=52.0
Q ss_pred CCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 77 LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 77 k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
..++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWK 59 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhh
Confidence 3578899999999999999999999999999999999999999999999999775543
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.71 E-value=2.2e-18 Score=113.68 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=49.4
Q ss_pred CCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 77 LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 77 k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
+.++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 4678899999999999999999999999999999999999999999999999776543
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.70 E-value=2.7e-18 Score=118.04 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=55.7
Q ss_pred cCCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 74 KNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 74 ~~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
.+.++++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~k 65 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTK 65 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchh
Confidence 3556788899999999999999999999999999999999999999999999999775543
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-18 Score=113.89 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=55.0
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
.++.++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKAR 63 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHh
Confidence 456788999999999999999999999999999999999999999999999999665543
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5e-18 Score=114.53 Aligned_cols=57 Identities=28% Similarity=0.344 Sum_probs=53.1
Q ss_pred CCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccc
Q psy16796 76 GLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEE 132 (166)
Q Consensus 76 ~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~k 132 (166)
+..++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAK 61 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccc
Confidence 456889999999999999999999999999999999999999999999999995543
No 12
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.69 E-value=3.1e-18 Score=112.62 Aligned_cols=56 Identities=32% Similarity=0.507 Sum_probs=50.0
Q ss_pred CCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
+++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 58 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKI 58 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccc
Confidence 57889999999999999999999999999999999999999999999999977654
No 13
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=2.5e-18 Score=122.45 Aligned_cols=62 Identities=29% Similarity=0.411 Sum_probs=55.6
Q ss_pred cCCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 74 KNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 74 ~~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
.+.+.++.||.||..|+..|+..|..++||+...|..||..|||++.+|+|||||+|.+...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 74 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 74 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhh
Confidence 34567889999999999999999999999999999999999999999999999996654433
No 14
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.69 E-value=4.9e-18 Score=109.96 Aligned_cols=56 Identities=29% Similarity=0.481 Sum_probs=52.7
Q ss_pred CCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
+++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 46789999999999999999999999999999999999999999999999988654
No 15
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=6.9e-18 Score=112.61 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=54.4
Q ss_pred CCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 77 LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 77 k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
++++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhH
Confidence 46889999999999999999999999999999999999999999999999997765543
No 16
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=5.3e-18 Score=117.37 Aligned_cols=60 Identities=28% Similarity=0.320 Sum_probs=55.0
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
....++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~k 63 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 63 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999775543
No 17
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.69 E-value=9e-18 Score=114.41 Aligned_cols=62 Identities=32% Similarity=0.440 Sum_probs=56.0
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccCC
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEGE 136 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~~ 136 (166)
..+.++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999977655443
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=4.9e-18 Score=110.42 Aligned_cols=55 Identities=36% Similarity=0.549 Sum_probs=51.9
Q ss_pred CCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 79 rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
|+.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 55 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 55 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhh
Confidence 5789999999999999999999999999999999999999999999999977553
No 19
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=5.2e-18 Score=114.33 Aligned_cols=60 Identities=22% Similarity=0.182 Sum_probs=54.8
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
..++++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKER 63 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHh
Confidence 456788999999999999999999999999999999999999999999999999664443
No 20
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=7.6e-18 Score=114.57 Aligned_cols=60 Identities=33% Similarity=0.356 Sum_probs=55.1
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
.+++++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 65 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWR 65 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999665544
No 21
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=8.1e-18 Score=116.33 Aligned_cols=59 Identities=27% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
.++.++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~ 62 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 62 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHh
Confidence 35678899999999999999999999999999999999999999999999999966543
No 22
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=7.8e-18 Score=113.99 Aligned_cols=57 Identities=19% Similarity=0.067 Sum_probs=53.9
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCCCCCcccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHF-NKYLCRPRRIEIAASLDLTERQSDCKYYVAKE 131 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~-~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ 131 (166)
.+.++|.||.|+..||..|+..|+. ++||+...|..||..|||++++|+|||||+|-
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 4578999999999999999999999 99999999999999999999999999999763
No 23
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=6.4e-18 Score=116.40 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=55.6
Q ss_pred cCCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 74 KNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 74 ~~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
...+.++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 73 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARER 73 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHh
Confidence 3466788999999999999999999999999999999999999999999999999665443
No 24
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.68 E-value=4.5e-18 Score=111.64 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=47.1
Q ss_pred CCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 76 GLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 76 ~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
++.++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 60 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 4568889999999999999999999999999999999999999999999999987653
No 25
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.8e-18 Score=116.17 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
..+.++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 62 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 62 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999977443
No 26
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=9e-18 Score=115.39 Aligned_cols=60 Identities=45% Similarity=0.589 Sum_probs=55.1
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
.+..++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~k 69 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 69 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999775543
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=6.9e-18 Score=113.41 Aligned_cols=56 Identities=34% Similarity=0.555 Sum_probs=52.8
Q ss_pred CCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
+++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~ 57 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRH 57 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999977543
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.67 E-value=2.9e-18 Score=115.38 Aligned_cols=56 Identities=54% Similarity=0.709 Sum_probs=52.3
Q ss_pred CCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
+++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~ 57 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKW 57 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHH
Confidence 47889999999999999999999999999999999999999999999999966543
No 29
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=1.5e-17 Score=112.30 Aligned_cols=57 Identities=32% Similarity=0.475 Sum_probs=52.7
Q ss_pred CCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccc
Q psy16796 76 GLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEE 132 (166)
Q Consensus 76 ~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~k 132 (166)
...++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhh
Confidence 356778999999999999999999999999999999999999999999999996543
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=9.8e-18 Score=109.90 Aligned_cols=55 Identities=44% Similarity=0.625 Sum_probs=51.4
Q ss_pred CCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 79 rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
++.||.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 56 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKD 56 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHh
Confidence 5789999999999999999999999999999999999999999999999977554
No 31
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.67 E-value=1e-17 Score=116.30 Aligned_cols=61 Identities=52% Similarity=0.680 Sum_probs=50.8
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
.+..++.||.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+...
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 77 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhh
Confidence 3456889999999999999999999999999999999999999999999999997765443
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=1.3e-17 Score=112.05 Aligned_cols=56 Identities=29% Similarity=0.455 Sum_probs=52.3
Q ss_pred CCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
+++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 57 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 57 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhh
Confidence 47889999999999999999999999999999999999999999999999966443
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-17 Score=111.50 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=53.8
Q ss_pred CCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccCC
Q psy16796 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEGE 136 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~~ 136 (166)
.|+.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 36789999999999999999999999999999999999999999999999976555443
No 34
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=2e-17 Score=114.53 Aligned_cols=58 Identities=29% Similarity=0.354 Sum_probs=53.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEE 132 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~k 132 (166)
.++.++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 72 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRAR 72 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhh
Confidence 4567889999999999999999999999999999999999999999999999997743
No 35
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.7e-17 Score=118.70 Aligned_cols=58 Identities=53% Similarity=0.803 Sum_probs=50.6
Q ss_pred CCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 76 GLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 76 ~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
+.+++.||.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~ 89 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQ 89 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHH
Confidence 5678889999999999999999999999999999999999999999999999977543
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.66 E-value=7.4e-18 Score=113.17 Aligned_cols=56 Identities=34% Similarity=0.398 Sum_probs=52.9
Q ss_pred CCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccc
Q psy16796 77 LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEE 132 (166)
Q Consensus 77 k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~k 132 (166)
++++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 57 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHH
Confidence 56889999999999999999999999999999999999999999999999997644
No 37
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.6e-18 Score=116.45 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=54.5
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFN----KYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~----~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
.+++++.||.||..|+..|+..|..+ +||+...+..||..|||++.+|+|||||+|.+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~ 67 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHH
Confidence 45678899999999999999999999 999999999999999999999999999966443
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.65 E-value=2.2e-17 Score=116.11 Aligned_cols=60 Identities=55% Similarity=0.748 Sum_probs=51.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
.+..++.||.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~k 84 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 84 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhH
Confidence 345788999999999999999999999999999999999999999999999999775543
No 39
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.64 E-value=3.7e-17 Score=116.83 Aligned_cols=61 Identities=11% Similarity=-0.024 Sum_probs=52.5
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
....++.|+.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+.+.
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 82 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhh
Confidence 3445778999999999999999999999999999999999999999999999997765543
No 40
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=7.3e-17 Score=109.76 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 77 LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 77 k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
..++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+...
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 63 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRN 63 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHh
Confidence 35778999999999999999999999999999999999999999999999997765443
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.63 E-value=4.1e-17 Score=106.93 Aligned_cols=54 Identities=28% Similarity=0.276 Sum_probs=48.3
Q ss_pred cccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 81 LRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 81 ~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
+|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||+|.+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~r 55 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWR 55 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhH
Confidence 589999999999999999999999999999999999999999999999775543
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.1e-17 Score=110.09 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=52.8
Q ss_pred CCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
+.+.|+.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+...
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 4556899999999999999999999999999999999999999999999996655544
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=9.8e-17 Score=109.15 Aligned_cols=55 Identities=27% Similarity=0.110 Sum_probs=50.9
Q ss_pred CCcccCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 79 RRLRTAYTNTQLLELEKEFHF-NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 79 rr~Rt~fT~~Ql~~Le~~F~~-~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
++.|+.||..|+..|+..|.. ++||+...+..||..|||++++|+|||||+|.+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~ 58 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 58 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 567899999999999999995 9999999999999999999999999999977443
No 44
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=9e-17 Score=108.94 Aligned_cols=55 Identities=27% Similarity=0.108 Sum_probs=50.8
Q ss_pred CCcccCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 79 RRLRTAYTNTQLLELEKEFHF-NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 79 rr~Rt~fT~~Ql~~Le~~F~~-~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
.+.|+.||..|+..|+..|.. ++||+...+..||..|||++++|+|||||+|.+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 57 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHH
Confidence 467899999999999999996 9999999999999999999999999999977443
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-16 Score=109.33 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=49.8
Q ss_pred CcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 80 RLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 80 r~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
+.|+.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 62 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKV 62 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHH
Confidence 456789999999999999999999999999999999999999999999976544
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.5e-16 Score=110.00 Aligned_cols=53 Identities=13% Similarity=-0.010 Sum_probs=49.2
Q ss_pred CcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccc
Q psy16796 80 RLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEE 132 (166)
Q Consensus 80 r~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~k 132 (166)
..|+.||..|+..|+..|..++||+..+|..||..|||+++||+|||||+|.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k 57 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHH
Confidence 34667999999999999999999999999999999999999999999997654
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.61 E-value=9.1e-17 Score=109.09 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=53.4
Q ss_pred CCCcccCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccCC
Q psy16796 78 PRRLRTAYTNTQLLELEKEF---HFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEGE 136 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F---~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~~ 136 (166)
+|+.|+.||..|+..|+..| ..++||+...+..||..+||++.||+|||||+|.+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 62 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccc
Confidence 36789999999999999999 899999999999999999999999999999966554433
No 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.61 E-value=7.8e-17 Score=104.38 Aligned_cols=51 Identities=29% Similarity=0.475 Sum_probs=46.8
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 83 TAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 83 t~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
|.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 52 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKW 52 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhh
Confidence 689999999999999999999999999999999999999999999977553
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=1.7e-16 Score=105.08 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=53.3
Q ss_pred CCCcccCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 78 PRRLRTAYTNTQLLELEKEF---HFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F---~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
+++.|+.||..|+..|+..| ..++||+..++..||..|||++.||+|||||+|.+..
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhc
Confidence 57789999999999999999 8999999999999999999999999999999776654
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2.6e-16 Score=106.85 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=53.4
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHF---NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~---~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
.++.++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.||+|||||+|.+.
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~ 65 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 65 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhc
Confidence 3456788999999999999999986 9999999999999999999999999999966543
No 51
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.59 E-value=3e-16 Score=120.13 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=52.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
.+++||.||.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+..
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 143 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 143 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhh
Confidence 456788899999999999999999999999999999999999999999999999776544
No 52
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.59 E-value=2.5e-16 Score=113.76 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=52.3
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------cC---CCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAAS------------------LD---LTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~------------------Lg---Lse~qVkVWFQN~k~ke 133 (166)
.++.||.|+.||..|+..|+..|..++||+...|..||.. || |++.+|+|||||+|.++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3567889999999999999999999999999999999999 98 99999999999988766
Q ss_pred cCCc
Q psy16796 134 EGED 137 (166)
Q Consensus 134 ~~~~ 137 (166)
+..-
T Consensus 86 k~k~ 89 (99)
T 1lfb_A 86 AFRH 89 (99)
T ss_dssp SCCC
T ss_pred HHhc
Confidence 5543
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=2.1e-16 Score=112.58 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------CCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLD---------------LTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~Lg---------------Lse~qVkVWFQN~k~ke 133 (166)
.++++|.|+.||..|+..|+..|..++||+...|..||..|+ |++.+|+|||||+|.+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~ 77 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEI 77 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999 99999999999977443
No 54
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.58 E-value=3.5e-16 Score=121.29 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=51.6
Q ss_pred CCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 76 GLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 76 ~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
.++||.||.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+.+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhh
Confidence 46788999999999999999999999999999999999999999999999999776654
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.57 E-value=6.6e-16 Score=118.52 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=55.5
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
.+++||.|+.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+.+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~K 149 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLK 149 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccC
Confidence 456788999999999999999999999999999999999999999999999999776543
No 56
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.3e-16 Score=103.57 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=49.3
Q ss_pred ccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 82 Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
+..++..|+..|+..|..++||+...|..||..|||++++|+|||||+|.|+.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~ 59 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQI 59 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCC
Confidence 45567999999999999999999999999999999999999999999888765
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.57 E-value=5e-16 Score=108.65 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCcccCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccCCc
Q psy16796 79 RRLRTAYTNTQLLELEKEF---HFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEGED 137 (166)
Q Consensus 79 rr~Rt~fT~~Ql~~Le~~F---~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~~~ 137 (166)
|+.|+.||..|+..|+..| ..++||+..++..||..|||++.||+|||||+|.+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 6789999999999999999 8999999999999999999999999999999765554443
No 58
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=3e-16 Score=107.00 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=51.6
Q ss_pred CCCcccCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 78 PRRLRTAYTNTQLLELEKEF-HFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 78 ~rr~Rt~fT~~Ql~~Le~~F-~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
..+.|.+++..|+..||..| ..++||+...|..||..|||+++||+|||||+|.+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r 65 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCC
Confidence 45567788999999999999 9999999999999999999999999999999776654
No 59
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-16 Score=111.81 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=54.7
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHc---------------------CCCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASL---------------------DLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~L---------------------gLse~qVkVWFQN~k~ke 133 (166)
.++.||.|+.|+..|+..|+..|..++||+...|..||..| +|++.+|+|||||+|.+.
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678899999999999999999999999999999999999 799999999999988554
No 60
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=8.4e-16 Score=109.07 Aligned_cols=50 Identities=24% Similarity=0.218 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 84 AYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 84 ~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
.||..||..|+..|..++||+...|..||..|||+++||+|||||+|.+.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~ 66 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSK 66 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHH
Confidence 79999999999999999999999999999999999999999999966443
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.55 E-value=9.1e-16 Score=107.58 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=52.7
Q ss_pred CCCCcccCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 77 LPRRLRTAYTNTQLLELEKEFHF---NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 77 k~rr~Rt~fT~~Ql~~Le~~F~~---~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
.+++.|+.||..|+..|+..|.. ++||+..++..||..+||++.||+|||||+|.+.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~ 85 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 85 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhc
Confidence 35666999999999999999999 9999999999999999999999999999977654
No 62
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-15 Score=106.63 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=53.1
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHF---NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~---~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
..+.++.|+.|+..|+..|+..|.. ++||+..+|..||..+||++.||+|||||+|.+.
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~ 65 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRI 65 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhh
Confidence 3456788999999999999999987 6999999999999999999999999999976554
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.55 E-value=6.1e-16 Score=120.59 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
.+++||.||.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.|...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTB
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhh
Confidence 4567889999999999999999999999999999999999999999999999996654443
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.54 E-value=1.2e-15 Score=99.82 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=49.2
Q ss_pred ccCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 82 RTAYTNTQLLELEKEFHF---NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 82 Rt~fT~~Ql~~Le~~F~~---~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
|+.||..|+..|+..|.. ++||+..++..||..+||++.||++||||+|.+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~ 56 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 56 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccc
Confidence 689999999999999999 9999999999999999999999999999977554
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-15 Score=103.33 Aligned_cols=55 Identities=31% Similarity=0.508 Sum_probs=49.8
Q ss_pred ccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccCC
Q psy16796 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEGE 136 (166)
Q Consensus 82 Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~~ 136 (166)
-..+|..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+....
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 3578999999999999999999999999999999999999999999976655443
No 66
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.54 E-value=1.5e-15 Score=117.69 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
..++||.|+.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+.+.
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~ 154 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLD 154 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccc
Confidence 4467889999999999999999999999999999999999999999999999996665543
No 67
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-15 Score=106.40 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccccCC
Q psy16796 83 TAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEGE 136 (166)
Q Consensus 83 t~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~~ 136 (166)
..||..||..|+..|..++||+...|..||..|||++++|+|||||+|.|....
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 349999999999999999999999999999999999999999999977665443
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.53 E-value=1.4e-15 Score=117.34 Aligned_cols=59 Identities=19% Similarity=0.140 Sum_probs=54.8
Q ss_pred CCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 76 GLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 76 ~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
++++|.||.||..|+..|+..|..++||+...|..||..|||++++|+|||||+|.+.+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~K 152 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGK 152 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccccc
Confidence 46778899999999999999999999999999999999999999999999999876543
No 69
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.52 E-value=2.4e-15 Score=104.73 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=50.0
Q ss_pred CcccCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 80 RLRTAYTNTQLLELEKEFHF---NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 80 r~Rt~fT~~Ql~~Le~~F~~---~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
+.|++||..|+..|+..|.. ++||+...+..||..+||++.||+|||||+|.+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk 62 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKT 62 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccc
Confidence 34667999999999999999 999999999999999999999999999996655444
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.51 E-value=2.7e-15 Score=100.98 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccccccc
Q psy16796 86 TNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEE 132 (166)
Q Consensus 86 T~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~k 132 (166)
|..|+..|+..|..++||+..+|..||..|||++++|+|||||+|.+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k 58 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhh
Confidence 68999999999999999999999999999999999999999997743
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=3.3e-15 Score=100.06 Aligned_cols=48 Identities=21% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHHHcCCCCCCccccccccccccc
Q psy16796 87 NTQLLELEKEF-HFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEE 134 (166)
Q Consensus 87 ~~Ql~~Le~~F-~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~ 134 (166)
..|+..||..| ..++||+...|..||..|||+++||+|||||+|.+.+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccC
Confidence 34799999999 6799999999999999999999999999999876654
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.40 E-value=1.6e-14 Score=115.60 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=52.6
Q ss_pred CCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------------CCCCCcccccccccccc
Q psy16796 75 NGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLD---------------------LTERQSDCKYYVAKEEE 133 (166)
Q Consensus 75 ~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~Lg---------------------Lse~qVkVWFQN~k~ke 133 (166)
.++.||.|+.|+..|+..|+..|..++||+...|..||..++ |++.+|+|||||+|.+.
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 456789999999999999999999999999999999999999 99999999999988765
Q ss_pred c
Q psy16796 134 E 134 (166)
Q Consensus 134 ~ 134 (166)
+
T Consensus 192 k 192 (194)
T 1ic8_A 192 A 192 (194)
T ss_dssp C
T ss_pred h
Confidence 4
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=1.1e-13 Score=92.76 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=46.7
Q ss_pred cCCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHcCCCCCCcccccccccccccC
Q psy16796 83 TAYTNTQLLELEKEFH---FNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEG 135 (166)
Q Consensus 83 t~fT~~Ql~~Le~~F~---~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke~~ 135 (166)
..|+..|+..|+..|. .++||+..++..||..+||++.||++||||+|.+...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk 58 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQ 58 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhH
Confidence 3799999999999999 9999999999999999999999999999997765543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.35 E-value=1.5e-13 Score=111.75 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=52.9
Q ss_pred cCCCCCCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------------CCCCCccccccccccc
Q psy16796 74 KNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLD---------------------LTERQSDCKYYVAKEE 132 (166)
Q Consensus 74 ~~~k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~Lg---------------------Lse~qVkVWFQN~k~k 132 (166)
..++.||.|+.|+..|+..|+..|..++||+..+|..||..+| |++.+|+|||||+|.+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4567889999999999999999999999999999999999987 8999999999998866
Q ss_pred c
Q psy16796 133 E 133 (166)
Q Consensus 133 e 133 (166)
+
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 5
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=8.6e-13 Score=89.58 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccc
Q psy16796 87 NTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKE 131 (166)
Q Consensus 87 ~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ 131 (166)
..|+..|+.+|..|++|+..++..||..+||+.++|+|||||+|.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 578999999999999999999999999999999999999999874
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.19 E-value=2.5e-12 Score=109.33 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 79 rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
++.++.|+..|+..|+..|+.++||+...|..||..+||+++||+|||||+|.|.
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~ 420 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 420 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccccc
Confidence 4568899999999999999999999999999999999999999999999988764
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.01 E-value=6.9e-11 Score=83.72 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=46.6
Q ss_pred cCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCCcccccccccccc
Q psy16796 83 TAYTNTQLLELEKEFHF---NKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEE 133 (166)
Q Consensus 83 t~fT~~Ql~~Le~~F~~---~~yp~~~~R~~LA~~LgLse~qVkVWFQN~k~ke 133 (166)
..|+..++..|..-|.. ++||+..+|..||..+||++.||++||||+|.+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~ 63 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRL 63 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 46889999999999987 9999999999999999999999999999976544
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.86 E-value=2.6e-06 Score=50.79 Aligned_cols=20 Identities=10% Similarity=-0.092 Sum_probs=14.9
Q ss_pred CCcccccccccccccCCchh
Q psy16796 120 RQSDCKYYVAKEEEEGEDEE 139 (166)
Q Consensus 120 ~qVkVWFQN~k~ke~~~~~~ 139 (166)
+||+|||||+|.|-+...-+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999977666555444
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.17 E-value=0.087 Score=35.24 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccc
Q psy16796 89 QLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYV 128 (166)
Q Consensus 89 Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN 128 (166)
-...|+.+|...+.+.......|+.+.+|+..||+-||--
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3578999999999999999999999999999999999943
No 80
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=71.38 E-value=0.075 Score=40.09 Aligned_cols=30 Identities=7% Similarity=-0.144 Sum_probs=22.0
Q ss_pred CCCCcccCCCHHHHHHHHHHhhhcCCCCHH
Q psy16796 77 LPRRLRTAYTNTQLLELEKEFHFNKYLCRP 106 (166)
Q Consensus 77 k~rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~ 106 (166)
..+|+||.|+..|+..|++.|+.++||...
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 457899999999999999999999998643
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=51.48 E-value=10 Score=24.92 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=31.7
Q ss_pred CCcccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccc
Q psy16796 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYV 128 (166)
Q Consensus 79 rr~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN 128 (166)
++.+..|+..+....-..+. ... ....+|..+|++...|.-|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34566788888665555554 222 2457899999999999999753
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=46.56 E-value=8 Score=23.52 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=29.8
Q ss_pred ccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccc
Q psy16796 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYV 128 (166)
Q Consensus 82 Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN 128 (166)
|..||...-..+...+... .........+|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 3468877766664444332 221112458999999999999999754
No 83
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=38.12 E-value=66 Score=22.70 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=33.1
Q ss_pred cccCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCCCCC
Q psy16796 81 LRTAYTNTQLLELEKEFHF-----NKYLCRPRRIEIAASLDLTERQ 121 (166)
Q Consensus 81 ~Rt~fT~~Ql~~Le~~F~~-----~~yp~~~~R~~LA~~LgLse~q 121 (166)
.|..+|..|+..|...|.. +-+++..+-..+.+.||+.+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 3567999999999999974 5589999988888889876653
No 84
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=34.76 E-value=26 Score=24.09 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=35.1
Q ss_pred cccCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccc
Q psy16796 81 LRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYV 128 (166)
Q Consensus 81 ~Rt~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN 128 (166)
.|..||..+...+-..+..+..+. ...||..+|++...|.-|..+
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhc
Confidence 467899999888877775554443 236899999999999999877
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.16 E-value=24 Score=19.18 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccc
Q psy16796 84 AYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYV 128 (166)
Q Consensus 84 ~fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN 128 (166)
.++..+...+...+... + ....+|..||++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 45666665555555332 2 3557899999999999999865
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.33 E-value=40 Score=22.05 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=29.8
Q ss_pred ccCCCHHHHHHHHHHhhhc-CCCCHHHHHHHHHHcCCCCCCccccccc
Q psy16796 82 RTAYTNTQLLELEKEFHFN-KYLCRPRRIEIAASLDLTERQSDCKYYV 128 (166)
Q Consensus 82 Rt~fT~~Ql~~Le~~F~~~-~yp~~~~R~~LA~~LgLse~qVkVWFQN 128 (166)
|..||..+....-..+... .+ ....+|..+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3568887766555444322 22 3568899999999999999854
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.30 E-value=35 Score=18.87 Aligned_cols=39 Identities=5% Similarity=0.008 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCCccccccc
Q psy16796 85 YTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYV 128 (166)
Q Consensus 85 fT~~Ql~~Le~~F~~~~yp~~~~R~~LA~~LgLse~qVkVWFQN 128 (166)
++..+...+...+... . ....+|..+|++...|.-|+..
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555555544432 2 3457899999999999999876
No 88
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=22.58 E-value=69 Score=22.86 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=35.3
Q ss_pred CCcccCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHH----Hc--CCCCCCccccccc
Q psy16796 79 RRLRTAYTNTQLLELEKEF-HFNKYLCRPRRIEIAA----SL--DLTERQSDCKYYV 128 (166)
Q Consensus 79 rr~Rt~fT~~Ql~~Le~~F-~~~~yp~~~~R~~LA~----~L--gLse~qVkVWFQN 128 (166)
++.|..+|..|-..|...+ ..+.-.+- ..||. .+ +++...|.-|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q---~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQ---QDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCH---HHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678999999999999998 55555543 34555 67 7777888888876
No 89
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.30 E-value=1.2e+02 Score=19.96 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=36.8
Q ss_pred cccCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcC--CCCCCccccccc
Q psy16796 81 LRTAYTNTQLLELEKEFHF-----NKYLCRPRRIEIAASLD--LTERQSDCKYYV 128 (166)
Q Consensus 81 ~Rt~fT~~Ql~~Le~~F~~-----~~yp~~~~R~~LA~~Lg--Lse~qVkVWFQN 128 (166)
....++..++..|...|.. +-+++..+-..+...+| ++...|+.+|+.
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3457889999999999863 56899999988888887 455667767653
Done!