RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16796
(166 letters)
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 50.8 bits (121), Expect = 9e-10
Identities = 34/64 (53%), Positives = 40/64 (62%)
Query: 58 MNERKENINKKKEEEKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDL 117
M ++ K E G P LRT +T QL ELEKEFHFNKYL R RR+EIAA+L+L
Sbjct: 7 MKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLEL 66
Query: 118 TERQ 121
E Q
Sbjct: 67 NETQ 70
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 48.7 bits (116), Expect = 4e-09
Identities = 27/44 (61%), Positives = 30/44 (68%)
Query: 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R+ R YT Q LELEKEF FN YL R RR E+A L+LTERQ
Sbjct: 13 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQ 56
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 48.2 bits (115), Expect = 5e-09
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RT++T Q+ LEKEF Y R +AA +DL E +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEAR 44
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 46.7 bits (111), Expect = 1e-08
Identities = 29/40 (72%), Positives = 31/40 (77%)
Query: 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R YT Q LELEKEFHFN+YL R RRIEIA +L LTERQ
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQ 40
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 46.0 bits (109), Expect = 3e-08
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ + ++N Q +ELEK+F KYL P R +A L L+ERQ
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ 43
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 44.9 bits (106), Expect = 6e-08
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 80 RLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R RTA+++ QL L++EF+ N+YL RR ++++ L L E Q
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQ 42
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 44.1 bits (104), Expect = 1e-07
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R+ R Y+ QL ELE+E+ NK++ + +R +I+A+ L+ERQ
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQ 44
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 43.8 bits (103), Expect = 2e-07
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R+ RT +T QLL LE++F +YL R E ++SL LTE Q
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQ 43
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 43.7 bits (103), Expect = 2e-07
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
RR RT ++ +QL ELE+ F +Y R E+A +LTE +
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEAR 45
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 43.9 bits (103), Expect = 3e-07
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCK 125
R R + L +E F+ N+Y +R EIA + + ++ K
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKK 47
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 42.5 bits (100), Expect = 4e-07
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R +T+ Q L F NK + +I I+ L L
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 41
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 42.6 bits (100), Expect = 5e-07
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 80 RLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R RTA+T QL LEKEF+ Y+ RPRR E+AA L+L E
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPEST 42
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 42.1 bits (99), Expect = 8e-07
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R+RT QL L + N + ++ L+ R
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRV 46
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 41.9 bits (98), Expect = 9e-07
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
RR RT +T+ QL +LE F N+Y R EIA +LTE +
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEAR 44
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 41.1 bits (96), Expect = 2e-06
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
PRR RT +T++Q+ ELE+ F +YL PR +++A L L Q
Sbjct: 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQ 44
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 39.6 bits (92), Expect = 1e-05
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 78 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R+ R +T Q ELE+ F +YL P R +A+ + LT Q
Sbjct: 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQ 52
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 38.6 bits (90), Expect = 2e-05
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 79 RRLRTAYTNTQLLELEKEF---HFNKYLCRPRRIEIAASLDLTERQ 121
+ R + + Y + +IAA +LT Q
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQ 48
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 37.9 bits (88), Expect = 2e-05
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+++ + LE+ F + L + E+A +T Q
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQ 40
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 37.6 bits (87), Expect = 3e-05
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 80 RLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+ RT + LE+ F + + +A L+L +
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEV 42
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 37.6 bits (87), Expect = 5e-05
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
R+ R ++ Q+ ELE+ F KYL P R +A+ + LT Q
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQ 45
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 36.9 bits (85), Expect = 9e-05
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 79 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
+R RT+ N LE F + IA L L +
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDV 51
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 36.1 bits (83), Expect = 1e-04
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
RT+ + LEK F N+ IA L++ +
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEV 41
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 36.6 bits (84), Expect = 1e-04
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 78 PRRLRTAYTNTQLLELEKEFH-FNKYLCRPRRIEIAASLDLTERQ 121
R RT + L L+ H Y + ++A LDL +
Sbjct: 7 GPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHT 51
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 34.3 bits (79), Expect = 4e-04
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 86 TNTQLLELEKEF-HFNKYLCRPRRIEIAASLDLTERQ 121
T LEK F K+ R ++ LD R
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRS 37
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 34.6 bits (79), Expect = 6e-04
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 79 RRLRTAYTNTQLLELEK---EFHFNKYLCRPRRIEIAASLDLTERQ 121
RR R + L + N Y + E+A +T Q
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQ 47
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 34.6 bits (79), Expect = 7e-04
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 79 RRLRTAYTNTQLLELEKEFHF-NKYLCRPRRIEIAASLDLTERQ 121
T Q+ LE F+ NK+ IAA LTE Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQ 45
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 34.0 bits (78), Expect = 8e-04
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 85 YTNTQLLELEKEFHFNK---YLCRPRRIEIAASLDLTERQ 121
+T + LE F N YL + + L+ Q
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQ 44
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 33.2 bits (76), Expect = 0.002
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 82 RTAYTNTQLLELEKEF-HFNKYLCRPRRIEIAASLDLTERQ 121
LEK F KY R ++ LD + R+
Sbjct: 5 SPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRK 45
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 31.3 bits (70), Expect = 0.010
Identities = 5/55 (9%), Positives = 12/55 (21%)
Query: 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKYYVAKEEEEGE 136
R + L + + K + R + + E +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSN 55
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 30.1 bits (67), Expect = 0.028
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 82 RTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 121
T QL L+ F + L + A LT R+
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRRE 47
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 30.0 bits (67), Expect = 0.039
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 74 KNGLPRRLRTAYTNTQLLELEKEFH----FNKYLCRPRRIEIAASLDLTERQ 121
G +R RT +T Q ++ + + A + +
Sbjct: 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQV 64
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 422
Score = 29.1 bits (65), Expect = 0.22
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 13 FIPSSIMIQLFCNKTIEEEEEEEEEEEE 40
+ + I++QL I + + E
Sbjct: 77 IVTAGIIMQLLVGSGIIQMDLSIPENRA 104
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 26.2 bits (57), Expect = 0.65
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 76 GLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQSDCKY 126
G T QL L+ F ++ R ++ L + +
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWF 51
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 26.6 bits (58), Expect = 1.6
Identities = 7/55 (12%), Positives = 16/55 (29%)
Query: 11 SYFIPSSIMIQLFCNKTIEEEEEEEEEEEEEKEEEEEEEEENTRTEEMNERKENI 65
S + + K + ++ E +E ++ER E +
Sbjct: 210 SELLGQPHNVSDVLLKALMTLQQHGASLLTESLSADEWLLYEQHFARISERNEKL 264
>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit
BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1)
[TaxId: 101510]}
Length = 154
Score = 25.5 bits (55), Expect = 2.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 71 EEKKNGLPRRLRTAYTNTQLLELEKEFHFNKY 102
+E+ L R YT+ L E E E F +
Sbjct: 11 DERTGRLDPR---IYTDEALYEQELERIFGRS 39
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 24.8 bits (54), Expect = 3.6
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 19 MIQLFCNKTIEEEEEEEEEEEEEK 42
++ L N ++ E E+ + +
Sbjct: 80 LVVLPYNTLRKKGEVEQPGDTQVV 103
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha
subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId:
92694]}
Length = 162
Score = 24.8 bits (53), Expect = 4.9
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 59 NERKENINKK-KEEEKKNGLPRRLRTAYTNTQLLELEKEFHFNKY 102
NE ++ + K + +P + ++ ++E+E F
Sbjct: 4 NELRQTLQKGLHDVNSDWTVPAA---IINDPEVHDVERERIFGHA 45
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 25.1 bits (54), Expect = 5.7
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 10/166 (6%)
Query: 11 SYFIPSSIMIQLFCNKTIEEEEEEEEEEEEEKEEEEEEEEENTRTEEMNERKENINKKKE 70
Y + L + + +EE E + ++E + + + E + K +E
Sbjct: 130 KYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQE 189
Query: 71 ----------EEKKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTER 120
PRR+R Y + L + EI A L
Sbjct: 190 LAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYL 249
Query: 121 QSDCKYYVAKEEEEGEDEEEEEEGEEEAKEQEQKQVGVIEKEKNKE 166
+ V + +E E E+E VG+ + E
Sbjct: 250 FRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGE 295
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 24.9 bits (53), Expect = 6.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 35 EEEEEEEKEEEEEEEEEN 52
E E++ EK E +
Sbjct: 306 EAEDKTEKLAAALEHHHH 323
Score = 24.2 bits (51), Expect = 9.9
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 128 VAKEEEEGEDEEEEEEGEEE 147
V K E E + E+ E
Sbjct: 302 VWKVEAEDKTEKLAAALEHH 321
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 227
Score = 24.4 bits (53), Expect = 7.6
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 2 IASQERQQRSYFIPSSIMIQLFCNKTIEEEEEEEEEEEEEKEEEEEEEEENTR 54
+ R R++ S +M+QL +I EE+ + K + R
Sbjct: 100 VNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCR 152
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 24.3 bits (52), Expect = 9.7
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 NKTIEEEEEEEEEEEEEKEEEEEEEEENTRTEEMNERKENINKKKEEEKK 74
NK +E EE + + +E+ ++ EN + + + +K KE EK+
Sbjct: 2 NKELETLREENRVKSDMLKEKLSKDAENH-KAYLKSHQVHRHKLKEMEKE 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.299 0.122 0.308
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 618,143
Number of extensions: 32575
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 173
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 49 (22.8 bits)