Query psy16797
Match_columns 99
No_of_seqs 102 out of 1003
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 22:20:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dms_A Homeobox protein OTX2; 99.9 1.1E-21 3.7E-26 113.7 9.9 69 17-85 4-72 (80)
2 2cra_A Homeobox protein HOX-B1 99.9 9.1E-22 3.1E-26 111.4 9.0 65 16-80 3-67 (70)
3 2dmu_A Homeobox protein goosec 99.9 1.4E-21 4.8E-26 110.6 9.6 65 17-81 4-68 (70)
4 2da2_A Alpha-fetoprotein enhan 99.9 1.1E-21 3.9E-26 111.0 9.1 66 16-81 3-68 (70)
5 2dmt_A Homeobox protein BARH-l 99.9 1.3E-21 4.3E-26 113.5 9.1 65 16-80 13-77 (80)
6 2da1_A Alpha-fetoprotein enhan 99.9 1.3E-21 4.3E-26 110.7 8.6 66 16-81 3-68 (70)
7 2da3_A Alpha-fetoprotein enhan 99.9 7.8E-22 2.7E-26 114.2 7.8 68 14-81 11-78 (80)
8 2vi6_A Homeobox protein nanog; 99.9 8.2E-22 2.8E-26 109.2 7.5 61 19-79 2-62 (62)
9 2dmq_A LIM/homeobox protein LH 99.9 1.2E-21 4.1E-26 113.5 8.3 68 17-84 4-71 (80)
10 2h1k_A IPF-1, pancreatic and d 99.9 1.5E-21 5.2E-26 108.4 8.1 61 19-79 2-62 (63)
11 2djn_A Homeobox protein DLX-5; 99.9 1.9E-21 6.5E-26 110.1 8.3 65 16-80 3-67 (70)
12 2e1o_A Homeobox protein PRH; D 99.9 4.2E-21 1.4E-25 108.7 9.4 65 17-81 4-68 (70)
13 2kt0_A Nanog, homeobox protein 99.9 2.4E-21 8.2E-26 113.1 8.5 66 15-80 17-82 (84)
14 2m0c_A Homeobox protein arista 99.9 4.9E-21 1.7E-25 109.5 9.5 68 15-82 4-71 (75)
15 2hdd_A Protein (engrailed home 99.9 3E-21 1E-25 106.5 8.0 58 20-77 3-60 (61)
16 1bw5_A ISL-1HD, insulin gene e 99.9 3.5E-21 1.2E-25 107.8 8.1 62 19-80 2-63 (66)
17 2l7z_A Homeobox protein HOX-A1 99.9 5.6E-21 1.9E-25 109.0 9.1 66 17-82 4-69 (73)
18 1ahd_P Antennapedia protein mu 99.9 2.9E-21 9.8E-26 108.8 7.8 64 20-83 2-65 (68)
19 1ig7_A Homeotic protein MSX-1; 99.9 4.8E-21 1.6E-25 104.7 8.5 58 21-78 1-58 (58)
20 1ftt_A TTF-1 HD, thyroid trans 99.9 7.6E-21 2.6E-25 107.1 9.4 63 20-82 2-64 (68)
21 1nk2_P Homeobox protein VND; h 99.9 5.9E-21 2E-25 109.9 9.0 66 16-81 5-70 (77)
22 2cue_A Paired box protein PAX6 99.8 5.9E-21 2E-25 110.6 8.7 64 17-80 4-67 (80)
23 1fjl_A Paired protein; DNA-bin 99.8 5.6E-21 1.9E-25 110.9 8.6 65 15-79 13-77 (81)
24 3a01_A Homeodomain-containing 99.8 3.7E-21 1.3E-25 114.4 7.9 73 14-86 11-83 (93)
25 2da4_A Hypothetical protein DK 99.8 3.2E-21 1.1E-25 111.7 7.0 66 16-81 4-73 (80)
26 1yz8_P Pituitary homeobox 2; D 99.8 2.2E-21 7.6E-26 109.3 6.0 65 18-82 1-65 (68)
27 1puf_A HOX-1.7, homeobox prote 99.8 1.1E-20 3.8E-25 108.7 9.0 64 16-79 9-72 (77)
28 1jgg_A Segmentation protein EV 99.8 1.1E-20 3.7E-25 104.0 8.3 58 21-78 2-59 (60)
29 2k40_A Homeobox expressed in E 99.8 1.6E-20 5.4E-25 105.4 8.9 61 21-81 2-62 (67)
30 1zq3_P PRD-4, homeotic bicoid 99.8 7.1E-21 2.4E-25 107.2 7.3 62 20-81 2-63 (68)
31 3rkq_A Homeobox protein NKX-2. 99.8 1.4E-20 4.6E-25 102.7 8.1 57 20-76 2-58 (58)
32 2r5y_A Homeotic protein sex co 99.8 1.1E-20 3.9E-25 111.2 8.3 64 16-79 24-87 (88)
33 1akh_A Protein (mating-type pr 99.8 7E-21 2.4E-25 105.0 6.9 59 18-76 3-61 (61)
34 1x2n_A Homeobox protein pknox1 99.8 3.1E-20 1.1E-24 105.8 9.6 67 16-82 3-72 (73)
35 1b8i_A Ultrabithorax, protein 99.8 1.3E-20 4.4E-25 109.5 8.1 64 16-79 16-79 (81)
36 1wh5_A ZF-HD homeobox family p 99.8 7.4E-21 2.5E-25 110.3 7.0 61 17-77 14-78 (80)
37 3nar_A ZHX1, zinc fingers and 99.8 1.7E-20 5.7E-25 112.1 8.4 66 15-80 20-85 (96)
38 2da5_A Zinc fingers and homeob 99.8 3.5E-20 1.2E-24 106.2 9.2 63 22-84 9-71 (75)
39 3a02_A Homeobox protein arista 99.8 1.5E-20 5.2E-25 103.4 7.2 57 23-79 2-58 (60)
40 1uhs_A HOP, homeodomain only p 99.8 2.6E-20 8.9E-25 105.9 8.2 62 21-82 2-64 (72)
41 2hi3_A Homeodomain-only protei 99.8 3.1E-20 1.1E-24 105.9 8.5 62 21-82 3-65 (73)
42 2cuf_A FLJ21616 protein; homeo 99.8 1.6E-20 5.6E-25 112.0 7.6 68 16-83 3-85 (95)
43 2ecc_A Homeobox and leucine zi 99.8 6.6E-20 2.3E-24 105.0 9.7 61 22-82 5-65 (76)
44 2ecb_A Zinc fingers and homeob 99.8 6.9E-20 2.4E-24 108.0 10.0 65 26-90 17-81 (89)
45 2dn0_A Zinc fingers and homeob 99.8 3.3E-20 1.1E-24 106.5 8.2 64 20-83 8-71 (76)
46 1b72_A Protein (homeobox prote 99.8 2.4E-20 8.1E-25 111.6 7.4 66 16-81 30-95 (97)
47 1puf_B PRE-B-cell leukemia tra 99.8 8.3E-20 2.9E-24 104.0 9.2 64 21-84 2-68 (73)
48 1wh7_A ZF-HD homeobox family p 99.8 1.1E-20 3.6E-25 109.6 5.5 62 15-77 12-78 (80)
49 2ly9_A Zinc fingers and homeob 99.8 1E-19 3.5E-24 103.9 9.2 63 20-82 6-68 (74)
50 3a03_A T-cell leukemia homeobo 99.8 5.1E-20 1.7E-24 100.1 7.5 54 25-78 2-55 (56)
51 2dmn_A Homeobox protein TGIF2L 99.8 1.3E-19 4.5E-24 105.6 9.0 68 17-84 4-74 (83)
52 1le8_B Mating-type protein alp 99.8 1.2E-19 4E-24 105.8 8.0 62 20-81 2-66 (83)
53 1b72_B Protein (PBX1); homeodo 99.8 7.7E-20 2.6E-24 107.3 7.1 64 21-84 2-68 (87)
54 1du6_A PBX1, homeobox protein 99.8 7.9E-20 2.7E-24 101.7 6.2 58 20-77 3-63 (64)
55 2xsd_C POU domain, class 3, tr 99.8 1.2E-19 4.1E-24 117.7 8.0 65 17-81 96-160 (164)
56 1e3o_C Octamer-binding transcr 99.8 1.6E-19 5.5E-24 116.6 8.4 62 17-78 98-159 (160)
57 1k61_A Mating-type protein alp 99.8 2.8E-19 9.6E-24 98.2 8.1 55 24-78 2-59 (60)
58 2dmp_A Zinc fingers and homeob 99.8 8.3E-19 2.8E-23 103.5 10.2 62 23-84 16-77 (89)
59 3d1n_I POU domain, class 6, tr 99.8 3.8E-19 1.3E-23 113.9 8.8 62 16-77 89-150 (151)
60 1mnm_C Protein (MAT alpha-2 tr 99.8 3.9E-19 1.3E-23 104.4 8.0 61 17-77 24-87 (87)
61 1au7_A Protein PIT-1, GHF-1; c 99.8 3.2E-19 1.1E-23 113.8 8.0 62 17-78 84-145 (146)
62 2cqx_A LAG1 longevity assuranc 99.8 2E-19 6.8E-24 102.4 6.1 61 20-80 8-69 (72)
63 1wi3_A DNA-binding protein SAT 99.8 5.9E-19 2E-23 98.4 7.7 61 16-76 3-64 (71)
64 2da6_A Hepatocyte nuclear fact 99.8 1.4E-18 4.8E-23 104.4 8.5 64 17-80 3-87 (102)
65 1lfb_A Liver transcription fac 99.8 6.2E-19 2.1E-23 105.8 6.9 66 16-81 5-91 (99)
66 3nau_A Zinc fingers and homeob 99.8 1E-18 3.6E-23 97.2 7.1 52 27-78 11-62 (66)
67 3l1p_A POU domain, class 5, tr 99.8 8.6E-19 2.9E-23 112.7 7.6 61 18-78 94-154 (155)
68 2l9r_A Homeobox protein NKX-3. 99.8 1.3E-18 4.6E-23 98.1 7.4 57 25-81 9-65 (69)
69 2e19_A Transcription factor 8; 99.8 2.8E-18 9.7E-23 95.5 7.3 56 24-79 7-62 (64)
70 2d5v_A Hepatocyte nuclear fact 99.8 1.9E-18 6.3E-23 111.9 7.2 66 17-82 94-159 (164)
71 1x2m_A LAG1 longevity assuranc 99.7 2.9E-18 9.9E-23 95.3 6.0 51 29-79 9-60 (64)
72 3k2a_A Homeobox protein MEIS2; 99.7 1.6E-17 5.3E-22 93.2 7.6 59 25-83 3-64 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 1.8E-16 6E-21 105.2 4.4 61 17-77 112-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.6 5.2E-15 1.8E-19 86.9 7.0 55 25-79 10-67 (89)
75 2da7_A Zinc finger homeobox pr 99.6 4.7E-15 1.6E-19 83.0 6.4 47 29-75 14-60 (71)
76 2h8r_A Hepatocyte nuclear fact 99.6 7.7E-15 2.6E-19 98.6 7.1 59 17-75 139-218 (221)
77 1mh3_A Maltose binding-A1 home 99.4 1.1E-13 3.8E-18 98.9 5.7 55 22-76 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 1.8E-10 6.1E-15 57.0 -3.7 23 62-84 1-23 (37)
79 2ys9_A Homeobox and leucine zi 97.3 0.00048 1.6E-08 38.2 4.9 45 27-71 13-57 (70)
80 2glo_A Brinker CG9653-PA; prot 93.1 0.25 8.7E-06 25.5 4.8 46 24-70 3-48 (59)
81 1hlv_A CENP-B, major centromer 92.9 0.65 2.2E-05 27.5 7.0 48 23-73 4-51 (131)
82 2elh_A CG11849-PA, LD40883P; s 90.1 1.5 5E-05 24.4 7.4 47 21-72 17-63 (87)
83 2o8x_A Probable RNA polymerase 88.6 1 3.6E-05 23.4 4.5 50 26-80 15-64 (70)
84 3hug_A RNA polymerase sigma fa 88.4 1.9 6.6E-05 23.9 5.8 47 27-78 38-84 (92)
85 3c57_A Two component transcrip 86.9 2.8 9.5E-05 23.6 7.1 50 25-80 26-75 (95)
86 2p7v_B Sigma-70, RNA polymeras 86.8 2.2 7.5E-05 22.3 6.0 52 26-78 5-56 (68)
87 2jn6_A Protein CGL2762, transp 86.5 2.9 9.8E-05 23.4 5.8 43 24-70 3-46 (97)
88 1je8_A Nitrate/nitrite respons 86.1 2.8 9.6E-05 22.9 5.9 48 24-77 19-66 (82)
89 3mzy_A RNA polymerase sigma-H 84.5 4.2 0.00014 24.1 6.2 47 26-78 109-155 (164)
90 1x3u_A Transcriptional regulat 84.1 3.3 0.00011 22.0 5.2 45 27-77 17-61 (79)
91 2lfw_A PHYR sigma-like domain; 83.9 2.3 7.9E-05 25.9 4.9 51 26-81 93-143 (157)
92 1p4w_A RCSB; solution structur 83.3 4.7 0.00016 23.1 6.7 47 24-76 32-78 (99)
93 2rnj_A Response regulator prot 82.2 3 0.0001 23.1 4.6 47 25-77 28-74 (91)
94 1tc3_C Protein (TC3 transposas 82.1 2.8 9.4E-05 19.6 5.6 40 26-70 5-44 (51)
95 1s7o_A Hypothetical UPF0122 pr 81.7 5.9 0.0002 23.2 6.0 48 26-78 22-69 (113)
96 1fse_A GERE; helix-turn-helix 81.0 4.3 0.00015 21.1 6.3 49 23-77 8-56 (74)
97 1jko_C HIN recombinase, DNA-in 80.7 0.96 3.3E-05 21.8 1.9 39 27-70 6-44 (52)
98 1ku3_A Sigma factor SIGA; heli 80.7 4.6 0.00016 21.3 6.3 50 26-76 10-59 (73)
99 2rn7_A IS629 ORFA; helix, all 80.6 5.9 0.0002 22.4 5.9 47 24-70 4-53 (108)
100 1tty_A Sigma-A, RNA polymerase 80.3 5.5 0.00019 21.9 6.2 53 26-79 18-70 (87)
101 2jpc_A SSRB; DNA binding prote 78.6 3.4 0.00011 20.8 3.7 27 51-77 17-43 (61)
102 1rp3_A RNA polymerase sigma fa 78.3 3.9 0.00013 26.0 4.7 48 26-78 187-234 (239)
103 1xsv_A Hypothetical UPF0122 pr 76.3 9.1 0.00031 22.3 5.8 48 26-78 25-72 (113)
104 2hin_A GP39, repressor protein 75.3 3.4 0.00011 22.5 3.2 21 50-70 13-33 (71)
105 3ulq_B Transcriptional regulat 74.2 9.2 0.00031 21.3 6.3 47 23-75 26-72 (90)
106 1iuf_A Centromere ABP1 protein 73.6 4.7 0.00016 24.5 3.9 52 21-72 6-61 (144)
107 1or7_A Sigma-24, RNA polymeras 73.4 11 0.00039 23.0 5.8 30 50-79 159-188 (194)
108 2q0o_A Probable transcriptiona 73.3 15 0.0005 23.8 6.5 48 24-77 173-220 (236)
109 3clo_A Transcriptional regulat 72.9 13 0.00046 24.4 6.3 47 25-77 196-242 (258)
110 3bd1_A CRO protein; transcript 71.7 3.8 0.00013 21.8 2.9 23 50-72 14-36 (79)
111 2x48_A CAG38821; archeal virus 69.9 3.4 0.00012 20.4 2.3 36 29-69 18-53 (55)
112 1l3l_A Transcriptional activat 69.2 20 0.00069 23.1 6.7 48 23-76 170-217 (234)
113 2q24_A Putative TETR family tr 67.3 3.3 0.00011 25.3 2.2 41 31-73 20-60 (194)
114 3t72_q RNA polymerase sigma fa 66.8 15 0.00053 20.9 5.8 53 26-79 19-71 (99)
115 2xi8_A Putative transcription 65.1 4.4 0.00015 20.3 2.1 22 50-71 17-38 (66)
116 2r1j_L Repressor protein C2; p 64.2 4.7 0.00016 20.3 2.1 22 50-71 21-42 (68)
117 2i10_A Putative TETR transcrip 63.8 9 0.00031 23.6 3.8 44 29-73 14-57 (202)
118 1zug_A Phage 434 CRO protein; 61.6 5.4 0.00019 20.3 2.1 23 50-72 19-41 (71)
119 3bs3_A Putative DNA-binding pr 60.8 5.9 0.0002 20.5 2.2 22 50-71 26-47 (76)
120 1rzs_A Antirepressor, regulato 60.2 5.6 0.00019 20.4 2.0 19 50-68 13-31 (61)
121 1j9i_A GPNU1 DBD;, terminase s 59.7 8.8 0.0003 20.0 2.7 21 50-70 5-25 (68)
122 3omt_A Uncharacterized protein 58.9 6.7 0.00023 20.3 2.2 22 50-71 24-45 (73)
123 1adr_A P22 C2 repressor; trans 58.2 6.8 0.00023 20.2 2.1 22 50-71 21-42 (76)
124 1u78_A TC3 transposase, transp 58.1 25 0.00084 20.3 5.6 42 25-71 5-46 (141)
125 3kz3_A Repressor protein CI; f 58.0 6.8 0.00023 20.8 2.1 23 50-72 28-50 (80)
126 1r69_A Repressor protein CI; g 57.9 7 0.00024 19.7 2.1 23 50-72 17-39 (69)
127 2b5a_A C.BCLI; helix-turn-heli 56.9 7.5 0.00026 20.1 2.2 22 50-71 26-47 (77)
128 3szt_A QCSR, quorum-sensing co 56.5 37 0.0013 21.9 6.4 46 24-75 173-218 (237)
129 3dcf_A Transcriptional regulat 56.4 6.6 0.00022 24.1 2.2 41 32-73 37-77 (218)
130 2wiu_B HTH-type transcriptiona 56.0 12 0.0004 19.9 3.0 23 50-72 28-50 (88)
131 2qwt_A Transcriptional regulat 55.3 8.6 0.00029 23.5 2.6 40 32-73 19-58 (196)
132 2qtq_A Transcriptional regulat 54.9 17 0.00058 22.0 3.9 41 32-73 22-62 (213)
133 2pmy_A RAS and EF-hand domain- 54.6 19 0.00067 19.2 3.8 46 24-69 18-68 (91)
134 3b7h_A Prophage LP1 protein 11 54.0 8.6 0.0003 19.9 2.1 23 50-72 23-45 (78)
135 2ict_A Antitoxin HIGA; helix-t 53.9 10 0.00035 20.7 2.5 22 50-71 24-45 (94)
136 1y7y_A C.AHDI; helix-turn-heli 53.8 9.1 0.00031 19.5 2.2 22 50-71 29-50 (74)
137 2kpj_A SOS-response transcript 53.6 8.7 0.0003 21.1 2.2 23 50-72 25-47 (94)
138 2hxi_A Putative transcriptiona 53.4 11 0.00037 24.5 2.9 50 23-73 25-75 (241)
139 2a6c_A Helix-turn-helix motif; 53.1 11 0.00036 20.2 2.4 23 50-72 34-56 (83)
140 3qp6_A CVIR transcriptional re 52.2 48 0.0017 21.9 7.4 48 24-77 195-242 (265)
141 1pdn_C Protein (PRD paired); p 52.0 19 0.00066 20.2 3.6 42 26-72 17-58 (128)
142 2rgt_A Fusion of LIM/homeobox 51.8 0.092 3.2E-06 33.1 -7.2 30 18-47 134-163 (169)
143 2x7l_M HIV REV; nuclear export 51.6 7.6 0.00026 23.1 1.7 35 33-81 16-50 (115)
144 3i5g_B Myosin regulatory light 51.5 36 0.0012 20.2 5.4 40 23-62 6-50 (153)
145 2jml_A DNA binding domain/tran 50.7 12 0.0004 20.2 2.4 20 50-69 8-27 (81)
146 3v6g_A Probable transcriptiona 50.3 7.8 0.00027 24.3 1.8 42 31-73 19-60 (208)
147 2rae_A Transcriptional regulat 50.0 11 0.00037 23.0 2.4 40 32-72 23-62 (207)
148 1fi6_A EH domain protein REPS1 49.7 29 0.001 18.7 5.0 44 26-69 2-50 (92)
149 2pij_A Prophage PFL 6 CRO; tra 49.2 15 0.00052 18.5 2.6 22 50-71 16-37 (67)
150 3bru_A Regulatory protein, TET 49.2 13 0.00043 22.9 2.6 41 32-73 36-76 (222)
151 3jsj_A Putative TETR-family tr 49.0 9.1 0.00031 23.0 1.9 41 31-73 14-54 (190)
152 2q1z_A RPOE, ECF SIGE; ECF sig 48.6 4.6 0.00016 24.7 0.5 27 52-78 156-182 (184)
153 2ef8_A C.ECOT38IS, putative tr 47.8 13 0.00044 19.5 2.2 22 50-71 26-47 (84)
154 2qko_A Possible transcriptiona 47.6 11 0.00039 23.2 2.2 41 32-73 34-74 (215)
155 2v57_A TETR family transcripti 47.0 7.6 0.00026 23.4 1.3 39 32-73 20-58 (190)
156 3fmy_A HTH-type transcriptiona 46.8 15 0.00051 19.2 2.3 40 25-71 9-48 (73)
157 2hku_A A putative transcriptio 46.8 11 0.00037 23.3 2.0 40 32-73 26-65 (215)
158 2fq4_A Transcriptional regulat 46.7 6.8 0.00023 23.9 1.0 42 32-74 18-59 (192)
159 1c07_A Protein (epidermal grow 46.3 35 0.0012 18.6 4.4 43 27-69 4-51 (95)
160 3ppb_A Putative TETR family tr 46.3 13 0.00045 22.1 2.3 42 31-73 14-55 (195)
161 3fiw_A Putative TETR-family tr 46.0 7.1 0.00024 24.8 1.1 51 22-73 20-71 (211)
162 2k9q_A Uncharacterized protein 46.0 12 0.00042 19.5 1.9 22 50-71 18-39 (77)
163 2zcx_A SCO7815, TETR-family tr 45.6 9 0.00031 24.4 1.5 41 32-73 29-69 (231)
164 3f6w_A XRE-family like protein 45.5 14 0.00048 19.4 2.1 22 50-71 30-51 (83)
165 2rek_A Putative TETR-family tr 45.0 8 0.00027 23.6 1.2 40 32-73 22-61 (199)
166 1t33_A Putative transcriptiona 44.7 12 0.00041 23.1 2.0 40 32-73 18-57 (224)
167 1uxc_A FRUR (1-57), fructose r 44.6 20 0.00069 18.7 2.6 23 50-72 3-25 (65)
168 3kz9_A SMCR; transcriptional r 44.4 13 0.00045 22.3 2.1 41 32-73 23-63 (206)
169 3f1b_A TETR-like transcription 44.3 5.9 0.0002 24.0 0.5 41 32-73 20-60 (203)
170 1lmb_3 Protein (lambda repress 44.2 15 0.00051 19.8 2.1 22 50-71 33-54 (92)
171 3t76_A VANU, transcriptional r 43.3 16 0.00054 20.3 2.1 22 50-71 40-61 (88)
172 3lsg_A Two-component response 42.9 34 0.0012 18.8 3.6 22 49-70 21-42 (103)
173 2cw1_A SN4M; lambda CRO fold, 42.8 19 0.00065 19.0 2.3 21 50-70 16-36 (65)
174 1x57_A Endothelial differentia 42.5 19 0.00066 19.4 2.4 23 50-72 29-51 (91)
175 3bni_A Putative TETR-family tr 42.2 8.1 0.00028 24.4 0.9 41 32-73 49-89 (229)
176 3s8q_A R-M controller protein; 42.2 17 0.00058 19.1 2.1 22 50-71 27-48 (82)
177 2lv7_A Calcium-binding protein 41.7 45 0.0015 18.5 4.6 47 23-69 26-79 (100)
178 3qq6_A HTH-type transcriptiona 40.5 19 0.00065 19.0 2.1 21 50-70 26-46 (78)
179 2ewt_A BLDD, putative DNA-bind 40.4 23 0.00078 17.8 2.4 22 50-71 24-47 (71)
180 1r8d_A Transcription activator 40.2 20 0.00069 20.4 2.4 19 51-69 6-24 (109)
181 3op9_A PLI0006 protein; struct 40.2 21 0.00073 20.1 2.5 22 50-71 25-46 (114)
182 3vpr_A Transcriptional regulat 40.0 27 0.00091 20.9 3.1 42 32-74 9-50 (190)
183 2a6h_F RNA polymerase sigma fa 39.9 59 0.002 23.3 5.2 49 27-76 361-409 (423)
184 3gzi_A Transcriptional regulat 39.7 29 0.001 21.1 3.2 41 32-73 23-63 (218)
185 2vz4_A Tipal, HTH-type transcr 39.7 21 0.00073 20.3 2.4 19 51-69 5-23 (108)
186 2g7l_A TETR-family transcripti 38.8 15 0.0005 23.9 1.8 50 23-73 15-65 (243)
187 2oer_A Probable transcriptiona 38.7 24 0.00082 21.8 2.7 38 35-73 33-70 (214)
188 2l49_A C protein; P2 bacteriop 38.2 16 0.00056 19.9 1.7 23 50-72 20-42 (99)
189 3dew_A Transcriptional regulat 37.8 12 0.00043 22.4 1.2 41 32-73 14-54 (206)
190 1l9z_H Sigma factor SIGA; heli 37.7 82 0.0028 22.9 5.7 50 27-77 376-425 (438)
191 2np5_A Transcriptional regulat 37.6 10 0.00036 23.3 0.8 41 32-73 15-55 (203)
192 2ppx_A AGR_C_3184P, uncharacte 37.6 22 0.00075 19.6 2.2 22 50-71 46-67 (99)
193 2lhi_A Calmodulin, serine/thre 37.5 29 0.001 21.2 2.9 45 24-68 2-53 (176)
194 2zcm_A Biofilm operon icaabcd 37.1 24 0.00081 21.2 2.5 43 30-73 11-53 (192)
195 3i9v_2 NADH-quinone oxidoreduc 37.0 61 0.0021 20.5 4.4 36 30-65 26-61 (181)
196 3mvp_A TETR/ACRR transcription 36.6 5.6 0.00019 24.4 -0.6 41 32-73 32-72 (217)
197 2jt1_A PEFI protein; solution 36.5 29 0.001 18.8 2.5 36 32-69 10-46 (77)
198 2g7g_A RHA04620, putative tran 36.5 15 0.00051 23.2 1.5 45 26-73 10-55 (213)
199 2ofy_A Putative XRE-family tra 36.3 24 0.00081 18.6 2.1 23 50-72 30-52 (86)
200 3bqz_B HTH-type transcriptiona 36.1 26 0.00089 20.8 2.5 41 32-73 8-48 (194)
201 2ao9_A Phage protein; structur 36.0 44 0.0015 20.8 3.5 46 25-70 22-71 (155)
202 3g1o_A Transcriptional regulat 35.9 24 0.00082 22.4 2.4 41 32-73 49-89 (255)
203 3vib_A MTRR; helix-turn-helix 35.8 23 0.00078 21.7 2.3 41 32-73 16-56 (210)
204 2d6y_A Putative TETR family re 35.8 33 0.0011 20.9 3.0 41 32-73 14-54 (202)
205 2hyt_A TETR-family transcripti 35.6 29 0.00098 21.0 2.7 41 32-73 18-58 (197)
206 2wui_A MEXZ, transcriptional r 35.1 28 0.00097 21.3 2.6 41 32-73 17-57 (210)
207 3mlf_A Transcriptional regulat 35.1 28 0.00095 19.8 2.4 23 50-72 39-61 (111)
208 3q0w_A HTH-type transcriptiona 35.0 19 0.00066 22.6 1.8 41 32-73 50-90 (236)
209 3c2b_A Transcriptional regulat 34.8 14 0.00049 22.7 1.2 41 32-73 21-61 (221)
210 2bnk_A Early protein GP16.7; D 34.7 52 0.0018 17.2 4.9 54 27-80 5-58 (67)
211 3c3w_A Two component transcrip 34.6 83 0.0029 19.5 6.3 46 25-76 148-193 (225)
212 3ivp_A Putative transposon-rel 34.6 27 0.00092 20.1 2.3 23 50-72 28-50 (126)
213 1b0n_A Protein (SINR protein); 34.4 26 0.00088 19.4 2.2 21 50-70 17-37 (111)
214 1neq_A DNA-binding protein NER 34.4 16 0.00056 19.5 1.2 21 50-70 25-45 (74)
215 3f0c_A TETR-molecule A, transc 34.4 20 0.00069 21.8 1.8 42 31-73 16-57 (216)
216 2pjp_A Selenocysteine-specific 34.2 57 0.0019 18.8 3.7 43 28-71 2-44 (121)
217 3g7r_A Putative transcriptiona 34.1 16 0.00056 22.7 1.4 41 32-73 41-81 (221)
218 2eby_A Putative HTH-type trans 34.1 26 0.00088 19.7 2.1 22 50-71 27-48 (113)
219 3qkx_A Uncharacterized HTH-typ 34.0 33 0.0011 20.2 2.7 41 32-73 14-54 (188)
220 2dg7_A Putative transcriptiona 33.6 20 0.00068 21.6 1.7 42 32-74 13-54 (195)
221 3cec_A Putative antidote prote 33.5 27 0.00092 19.3 2.1 22 50-71 34-55 (104)
222 3eus_A DNA-binding protein; st 33.4 29 0.00099 18.6 2.2 23 50-72 30-52 (86)
223 3lwj_A Putative TETR-family tr 33.1 27 0.00093 20.9 2.3 41 32-73 18-58 (202)
224 1q06_A Transcriptional regulat 33.1 30 0.001 20.6 2.4 19 51-69 4-22 (135)
225 1l0o_C Sigma factor; bergerat 33.1 9.1 0.00031 24.2 0.0 43 27-74 199-241 (243)
226 3rd3_A Probable transcriptiona 33.1 13 0.00046 22.2 0.8 41 32-73 16-56 (197)
227 2xdn_A HTH-type transcriptiona 32.9 23 0.00078 21.7 1.9 41 32-73 17-57 (210)
228 2yve_A Transcriptional regulat 32.7 34 0.0012 20.5 2.7 41 32-73 10-50 (185)
229 4dyq_A Gene 1 protein; GP1, oc 32.6 30 0.001 20.8 2.3 46 20-70 6-52 (140)
230 3hh0_A Transcriptional regulat 32.6 31 0.0011 21.0 2.4 20 50-69 7-26 (146)
231 1ity_A TRF1; helix-turn-helix, 32.2 57 0.0019 16.9 5.4 51 17-70 3-56 (69)
232 3gp4_A Transcriptional regulat 32.0 31 0.0011 20.8 2.3 20 50-69 5-24 (142)
233 3o9x_A Uncharacterized HTH-typ 31.9 28 0.00097 20.2 2.1 23 50-72 87-109 (133)
234 3lfp_A CSP231I C protein; tran 31.9 37 0.0013 18.5 2.5 22 50-71 17-42 (98)
235 2guh_A Putative TETR-family tr 31.8 13 0.00045 23.3 0.6 42 32-74 45-86 (214)
236 2nx4_A Transcriptional regulat 31.5 30 0.001 20.9 2.3 41 32-73 16-56 (194)
237 3knw_A Putative transcriptiona 31.5 30 0.001 20.9 2.3 41 32-73 20-60 (212)
238 2eh3_A Transcriptional regulat 31.2 31 0.0011 20.4 2.3 41 32-73 8-48 (179)
239 2hxo_A Putative TETR-family tr 31.1 19 0.00065 23.2 1.3 50 23-73 12-62 (237)
240 3bhq_A Transcriptional regulat 31.1 43 0.0015 20.4 3.0 41 32-73 18-58 (211)
241 2v79_A DNA replication protein 31.0 87 0.003 18.7 5.2 44 27-73 30-77 (135)
242 3anp_C Transcriptional repress 30.5 28 0.00097 21.1 2.0 41 32-73 15-55 (204)
243 1y66_A Engrailed homeodomain; 30.4 17 0.00058 17.9 0.7 38 33-70 10-47 (52)
244 3g5g_A Regulatory protein; tra 30.4 33 0.0011 19.1 2.2 22 50-71 44-65 (99)
245 3npi_A TETR family regulatory 30.3 15 0.0005 23.4 0.7 41 32-73 24-64 (251)
246 3he0_A Transcriptional regulat 30.1 22 0.00075 21.2 1.4 44 29-73 14-57 (196)
247 3trb_A Virulence-associated pr 30.1 33 0.0011 19.4 2.1 23 50-72 30-52 (104)
248 1pb6_A Hypothetical transcript 30.1 34 0.0011 20.6 2.3 41 32-73 24-64 (212)
249 2fjr_A Repressor protein CI; g 29.9 34 0.0012 21.0 2.4 24 49-72 22-45 (189)
250 3qbm_A TETR transcriptional re 29.6 21 0.0007 21.4 1.2 41 32-73 13-53 (199)
251 3f52_A CLP gene regulator (CLG 29.6 34 0.0012 19.3 2.1 23 50-72 44-66 (117)
252 3gpv_A Transcriptional regulat 29.5 37 0.0013 20.6 2.4 20 50-69 19-38 (148)
253 2o7t_A Transcriptional regulat 29.2 27 0.00092 21.1 1.8 41 32-73 14-54 (199)
254 1vi0_A Transcriptional regulat 29.1 22 0.00075 21.9 1.3 41 32-73 14-54 (206)
255 2ovg_A Phage lambda CRO; trans 29.1 47 0.0016 17.4 2.5 21 50-70 16-36 (66)
256 2dg8_A Putative TETR-family tr 29.0 18 0.00062 21.8 0.9 42 31-73 14-55 (193)
257 3lhq_A Acrab operon repressor 28.6 36 0.0012 20.5 2.3 41 32-73 20-60 (220)
258 3dpj_A Transcription regulator 28.6 37 0.0013 20.2 2.3 41 32-73 14-54 (194)
259 3on4_A Transcriptional regulat 28.4 32 0.0011 20.3 2.0 41 32-73 16-56 (191)
260 2ibd_A Possible transcriptiona 28.4 35 0.0012 20.7 2.2 41 32-73 20-60 (204)
261 4aci_A HTH-type transcriptiona 28.2 42 0.0014 19.9 2.5 41 32-73 20-60 (191)
262 2iai_A Putative transcriptiona 27.9 11 0.00038 23.7 -0.2 42 31-73 35-76 (230)
263 3vp5_A Transcriptional regulat 27.7 47 0.0016 20.0 2.7 41 32-73 18-58 (189)
264 3egq_A TETR family transcripti 27.7 28 0.00094 20.4 1.6 41 32-73 10-50 (170)
265 2w53_A Repressor, SMet; antibi 27.6 22 0.00074 21.9 1.1 42 31-73 16-57 (219)
266 2zhg_A Redox-sensitive transcr 27.5 41 0.0014 20.6 2.3 20 50-69 14-33 (154)
267 3vk0_A NHTF, transcriptional r 27.5 30 0.001 19.6 1.6 22 50-71 37-58 (114)
268 2gen_A Probable transcriptiona 27.3 44 0.0015 20.2 2.5 41 32-73 13-53 (197)
269 2jvl_A TRMBF1; coactivator, he 27.3 31 0.0011 19.4 1.7 23 50-72 52-74 (107)
270 2jj7_A Hemolysin II regulatory 27.2 44 0.0015 19.8 2.5 39 34-73 15-53 (186)
271 3bdn_A Lambda repressor; repre 27.2 31 0.0011 22.0 1.8 22 50-71 33-54 (236)
272 3i5g_C Myosin catalytic light 27.1 60 0.002 19.3 3.1 37 26-62 2-45 (159)
273 1ui5_A A-factor receptor homol 27.0 40 0.0014 20.8 2.3 42 31-73 14-55 (215)
274 3oio_A Transcriptional regulat 26.8 39 0.0013 18.9 2.1 23 48-70 24-46 (113)
275 2gqb_A Conserved hypothetical 26.6 1E+02 0.0034 18.7 3.8 29 45-73 81-114 (130)
276 1a04_A Nitrate/nitrite respons 26.6 1.1E+02 0.0039 18.5 6.3 46 25-76 153-198 (215)
277 2f07_A YVDT; helix-turn-helix, 26.5 34 0.0012 20.7 1.9 41 31-72 15-55 (197)
278 2g7s_A Transcriptional regulat 26.1 28 0.00096 20.6 1.4 41 32-73 14-54 (194)
279 3c07_A Putative TETR-family tr 26.1 47 0.0016 21.6 2.6 41 32-73 47-87 (273)
280 2oi8_A Putative regulatory pro 26.0 13 0.00045 23.4 -0.2 41 32-73 22-62 (216)
281 3rmq_A Uncharacterized protein 25.8 93 0.0032 18.4 3.5 38 24-65 69-106 (116)
282 3oou_A LIN2118 protein; protei 25.7 69 0.0024 17.7 3.0 21 49-69 23-43 (108)
283 2qib_A TETR-family transcripti 25.7 33 0.0011 21.5 1.7 41 32-73 19-59 (231)
284 3cdl_A Transcriptional regulat 25.7 27 0.00093 21.3 1.3 41 32-73 15-55 (203)
285 2l8n_A Transcriptional repress 25.5 29 0.00098 18.2 1.2 22 50-71 12-33 (67)
286 3bjb_A Probable transcriptiona 25.5 34 0.0012 21.0 1.8 41 32-73 28-68 (207)
287 3nxc_A HTH-type protein SLMA; 25.5 23 0.00079 21.4 0.9 35 38-73 37-71 (212)
288 2b3g_B Cellular tumor antigen 25.4 44 0.0015 14.4 1.5 14 56-69 10-23 (28)
289 2opt_A Actii protein; helical 25.3 74 0.0025 20.3 3.4 46 27-73 6-52 (234)
290 1xwr_A Regulatory protein CII; 25.3 40 0.0014 19.3 1.9 20 50-69 26-45 (97)
291 3kxa_A NGO0477 protein, putati 25.2 52 0.0018 19.6 2.5 22 50-71 84-105 (141)
292 3b81_A Transcriptional regulat 25.0 28 0.00095 20.9 1.2 41 32-73 17-57 (203)
293 2jrt_A Uncharacterized protein 24.8 1E+02 0.0034 17.4 5.0 43 23-70 29-72 (95)
294 3loc_A HTH-type transcriptiona 24.8 36 0.0012 20.4 1.8 38 35-73 27-64 (212)
295 2zb9_A Putative transcriptiona 24.6 31 0.001 21.1 1.4 41 32-73 29-69 (214)
296 2of7_A Putative TETR-family tr 24.6 44 0.0015 21.3 2.2 44 32-76 54-97 (260)
297 1rkt_A Protein YFIR; transcrip 24.4 28 0.00095 21.2 1.2 41 32-73 18-58 (205)
298 2opo_A Polcalcin CHE A 3; calc 24.4 80 0.0027 16.1 4.3 44 26-69 4-53 (86)
299 3ccy_A Putative TETR-family tr 24.4 18 0.00062 22.0 0.3 41 32-73 20-60 (203)
300 2y2z_A SIM16, SIMR, putative r 24.4 34 0.0011 22.6 1.6 47 26-73 26-73 (267)
301 2gfn_A HTH-type transcriptiona 24.3 34 0.0012 21.1 1.5 41 32-73 15-55 (209)
302 3crj_A Transcription regulator 24.2 29 0.00098 21.2 1.2 41 32-73 20-60 (199)
303 3pas_A TETR family transcripti 24.2 37 0.0013 20.0 1.7 39 34-73 16-54 (195)
304 1sgm_A Putative HTH-type trans 24.2 33 0.0011 20.2 1.5 41 32-73 12-53 (191)
305 3kkd_A Transcriptional regulat 24.1 14 0.00048 23.2 -0.3 41 32-73 41-81 (237)
306 2pz9_A Putative regulatory pro 24.0 14 0.00047 23.2 -0.4 41 32-73 36-76 (226)
307 4ghj_A Probable transcriptiona 24.0 67 0.0023 18.1 2.7 22 50-71 52-73 (101)
308 3on2_A Probable transcriptiona 23.9 7.2 0.00025 23.4 -1.7 42 31-73 17-58 (199)
309 3s5r_A Transcriptional regulat 23.8 36 0.0012 20.6 1.6 42 31-73 15-56 (216)
310 3mkl_A HTH-type transcriptiona 23.7 49 0.0017 18.8 2.1 22 48-69 24-45 (120)
311 2k27_A Paired box protein PAX- 23.4 1.2E+02 0.0042 17.9 8.8 47 24-70 81-134 (159)
312 3k2z_A LEXA repressor; winged 22.9 1.3E+02 0.0045 18.6 4.2 41 27-69 3-46 (196)
313 1qbj_A Protein (double-strande 22.8 93 0.0032 16.9 3.0 20 50-69 30-49 (81)
314 3cwr_A Transcriptional regulat 22.6 35 0.0012 20.4 1.4 41 32-73 23-63 (208)
315 1zs4_A Regulatory protein CII; 22.6 72 0.0025 17.8 2.5 19 51-69 28-46 (83)
316 2o38_A Hypothetical protein; a 22.5 54 0.0019 19.0 2.1 23 50-72 56-78 (120)
317 1qgp_A Protein (double strande 22.4 98 0.0034 16.4 3.1 34 37-70 21-54 (77)
318 3frq_A Repressor protein MPHR( 22.3 61 0.0021 19.3 2.4 42 31-73 13-54 (195)
319 1k78_A Paired box protein PAX5 22.1 1.3E+02 0.0043 17.5 8.0 47 24-70 88-141 (149)
320 3mn2_A Probable ARAC family tr 22.0 1.1E+02 0.0037 16.8 4.1 22 49-70 20-41 (108)
321 2ras_A Transcriptional regulat 21.9 26 0.00089 21.3 0.6 41 32-73 17-57 (212)
322 1u8b_A ADA polyprotein; protei 21.8 94 0.0032 17.9 3.2 23 48-70 94-116 (133)
323 3rh2_A Hypothetical TETR-like 21.7 37 0.0013 20.6 1.4 41 32-73 9-49 (212)
324 1bjf_A Neurocalcin delta; calc 21.6 1.3E+02 0.0046 17.7 4.2 27 44-70 7-33 (193)
325 2g3b_A Putative TETR-family tr 21.5 62 0.0021 19.8 2.4 38 35-73 12-49 (208)
326 2fbq_A Probable transcriptiona 21.5 61 0.0021 20.2 2.4 41 32-73 13-53 (235)
327 3col_A Putative transcription 21.5 17 0.0006 21.6 -0.2 41 32-73 16-56 (196)
328 3klo_A Transcriptional regulat 21.0 1.6E+02 0.0053 18.1 5.5 43 26-74 159-201 (225)
329 3kkc_A TETR family transcripti 20.9 28 0.00094 20.4 0.6 41 32-73 18-58 (177)
330 3u0k_A Rcamp; fluorescent prot 20.5 1.4E+02 0.0049 21.8 4.4 47 23-69 292-345 (440)
331 1jhf_A LEXA repressor; LEXA SO 20.4 1.4E+02 0.0049 18.4 4.0 40 27-69 4-48 (202)
332 1yio_A Response regulatory pro 20.2 1.5E+02 0.0052 17.8 6.1 45 26-76 142-186 (208)
333 2jpf_A Hypothetical protein; a 20.1 41 0.0014 19.3 1.2 12 62-73 52-63 (127)
No 1
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=1.1e-21 Score=113.72 Aligned_cols=69 Identities=32% Similarity=0.502 Sum_probs=63.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCch
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDNL 85 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~~ 85 (99)
.++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+........
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~ 72 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNG 72 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCC
Confidence 456778999999999999999999999999999999999999999999999999999999987665443
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=9.1e-22 Score=111.41 Aligned_cols=65 Identities=38% Similarity=0.706 Sum_probs=60.7
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 35667788999999999999999999999999999999999999999999999999999998664
No 3
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=110.62 Aligned_cols=65 Identities=35% Similarity=0.606 Sum_probs=60.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
.+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 45667889999999999999999999999999999999999999999999999999999997653
No 4
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=110.95 Aligned_cols=66 Identities=33% Similarity=0.480 Sum_probs=61.3
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
..++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 356677899999999999999999999999999999999999999999999999999999997654
No 5
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=113.46 Aligned_cols=65 Identities=45% Similarity=0.709 Sum_probs=60.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
..++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 34566778999999999999999999999999999999999999999999999999999999765
No 6
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=110.75 Aligned_cols=66 Identities=27% Similarity=0.409 Sum_probs=61.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 345677899999999999999999999999999999999999999999999999999999997654
No 7
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=7.8e-22 Score=114.17 Aligned_cols=68 Identities=29% Similarity=0.477 Sum_probs=62.3
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 14 ADEKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 14 ~~~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
.....+.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 34456677899999999999999999999999999999999999999999999999999999997654
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.86 E-value=8.2e-22 Score=109.17 Aligned_cols=61 Identities=39% Similarity=0.653 Sum_probs=53.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 19 GKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 19 ~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 5677899999999999999999999999999999999999999999999999999999853
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=113.48 Aligned_cols=68 Identities=28% Similarity=0.442 Sum_probs=62.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCc
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDN 84 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~ 84 (99)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.......
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~ 71 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQEN 71 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHhc
Confidence 45667889999999999999999999999999999999999999999999999999999997655443
No 10
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.86 E-value=1.5e-21 Score=108.43 Aligned_cols=61 Identities=64% Similarity=0.882 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 19 GKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 19 ~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4577899999999999999999999999999999999999999999999999999999864
No 11
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=110.11 Aligned_cols=65 Identities=40% Similarity=0.662 Sum_probs=60.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
..++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 35567789999999999999999999999999999999999999999999999999999998654
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=4.2e-21 Score=108.65 Aligned_cols=65 Identities=38% Similarity=0.664 Sum_probs=60.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
....++.|++|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 34566788999999999999999999999999999999999999999999999999999987653
No 13
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=113.12 Aligned_cols=66 Identities=36% Similarity=0.611 Sum_probs=61.1
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 15 DEKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 15 ~~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
...++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+...
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 345567788999999999999999999999999999999999999999999999999999998764
No 14
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.86 E-value=4.9e-21 Score=109.52 Aligned_cols=68 Identities=41% Similarity=0.569 Sum_probs=62.5
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 15 DEKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 15 ~~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
+..+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 34567778999999999999999999999999999999999999999999999999999999976553
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.85 E-value=3e-21 Score=106.54 Aligned_cols=58 Identities=53% Similarity=0.873 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678999999999999999999999999999999999999999999999999999987
No 16
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.85 E-value=3.5e-21 Score=107.84 Aligned_cols=62 Identities=31% Similarity=0.431 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 19 GKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 19 ~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 35678999999999999999999999999999999999999999999999999999998653
No 17
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.85 E-value=5.6e-21 Score=109.01 Aligned_cols=66 Identities=39% Similarity=0.643 Sum_probs=61.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 345677899999999999999999999999999999999999999999999999999999976554
No 18
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.85 E-value=2.9e-21 Score=108.84 Aligned_cols=64 Identities=53% Similarity=0.819 Sum_probs=60.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCC
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPED 83 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~ 83 (99)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 4678999999999999999999999999999999999999999999999999999999876544
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.85 E-value=4.8e-21 Score=104.69 Aligned_cols=58 Identities=48% Similarity=0.822 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 4688999999999999999999999999999999999999999999999999999873
No 20
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.85 E-value=7.6e-21 Score=107.07 Aligned_cols=63 Identities=35% Similarity=0.669 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 567899999999999999999999999999999999999999999999999999999977654
No 21
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.85 E-value=5.9e-21 Score=109.91 Aligned_cols=66 Identities=36% Similarity=0.620 Sum_probs=60.4
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
..+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 345667789999999999999999999999999999999999999999999999999999986543
No 22
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=5.9e-21 Score=110.63 Aligned_cols=64 Identities=38% Similarity=0.626 Sum_probs=59.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
.+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 4567788999999999999999999999999999999999999999999999999999998653
No 23
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.85 E-value=5.6e-21 Score=110.92 Aligned_cols=65 Identities=37% Similarity=0.639 Sum_probs=58.3
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 15 DEKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 15 ~~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
...++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 13 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 13 ALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp ----CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 34566778999999999999999999999999999999999999999999999999999999853
No 24
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.85 E-value=3.7e-21 Score=114.41 Aligned_cols=73 Identities=37% Similarity=0.623 Sum_probs=63.3
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCchh
Q psy16797 14 ADEKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDNLE 86 (99)
Q Consensus 14 ~~~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~~~ 86 (99)
....++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+........+
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~ 83 (93)
T 3a01_A 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAE 83 (93)
T ss_dssp TSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHH
Confidence 3445667789999999999999999999999999999999999999999999999999999999876654433
No 25
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=111.71 Aligned_cols=66 Identities=26% Similarity=0.391 Sum_probs=61.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQ----NYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~----~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
..++.++.|+.|+.+|+.+|+..|..+ +||+..++..||..+||++.+|++||||+|+++|+....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 456677899999999999999999999 999999999999999999999999999999999996543
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.84 E-value=2.2e-21 Score=109.26 Aligned_cols=65 Identities=35% Similarity=0.553 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 18 KGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 18 ~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 35678899999999999999999999999999999999999999999999999999999977643
No 27
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.84 E-value=1.1e-20 Score=108.74 Aligned_cols=64 Identities=50% Similarity=0.767 Sum_probs=59.7
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+..
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 4556677899999999999999999999999999999999999999999999999999999854
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.84 E-value=1.1e-20 Score=104.00 Aligned_cols=58 Identities=57% Similarity=0.889 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5689999999999999999999999999999999999999999999999999999874
No 29
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=105.43 Aligned_cols=61 Identities=43% Similarity=0.588 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 6789999999999999999999999999999999999999999999999999999987654
No 30
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.84 E-value=7.1e-21 Score=107.20 Aligned_cols=62 Identities=37% Similarity=0.628 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999986544
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=102.69 Aligned_cols=57 Identities=44% Similarity=0.781 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 457899999999999999999999999999999999999999999999999999875
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.84 E-value=1.1e-20 Score=111.18 Aligned_cols=64 Identities=55% Similarity=0.802 Sum_probs=55.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+..
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4556778999999999999999999999999999999999999999999999999999999864
No 33
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.84 E-value=7e-21 Score=105.01 Aligned_cols=59 Identities=20% Similarity=0.480 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 18 KGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 18 ~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45667899999999999999999999999999999999999999999999999999875
No 34
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=3.1e-20 Score=105.83 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=60.9
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQ---QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
..++.++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|+++++.....
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 34567778999999999999999976 99999999999999999999999999999999999976543
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.84 E-value=1.3e-20 Score=109.47 Aligned_cols=64 Identities=52% Similarity=0.794 Sum_probs=54.6
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3456677899999999999999999999999999999999999999999999999999999864
No 36
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=7.4e-21 Score=110.32 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQ----QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~----~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
.++++|.|+.|+.+|+..|+..|.. ++||+..++.+||..+||++.+|++||||+|+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4466788999999999999999999 999999999999999999999999999999999876
No 37
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=112.13 Aligned_cols=66 Identities=27% Similarity=0.370 Sum_probs=56.8
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 15 DEKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 15 ~~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
...+..++.|+.|+..|+.+|+..|..++||+..++..||..+||+..+|++||||+|+++|+...
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 344556678999999999999999999999999999999999999999999999999999999654
No 38
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=106.23 Aligned_cols=63 Identities=29% Similarity=0.418 Sum_probs=57.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCc
Q psy16797 22 RARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDN 84 (99)
Q Consensus 22 r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~ 84 (99)
+.|..||..|+..|+..|..++||+..++..||..+||+..+|++||+|+|+++|+.......
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 71 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKSG 71 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSSCC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcccC
Confidence 456779999999999999999999999999999999999999999999999999998765443
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.83 E-value=1.5e-20 Score=103.40 Aligned_cols=57 Identities=40% Similarity=0.619 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 23 ARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 578999999999999999999999999999999999999999999999999999865
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=2.6e-20 Score=105.90 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 21 KRARTAYTSNQLLALEKEFNQ-QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f~~-~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCC
Confidence 467889999999999999996 99999999999999999999999999999999999976443
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=3.1e-20 Score=105.88 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 21 KRARTAYTSNQLLALEKEFNQ-QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f~~-~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCC
Confidence 467899999999999999995 99999999999999999999999999999999999977543
No 42
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.6e-20 Score=111.98 Aligned_cols=68 Identities=25% Similarity=0.407 Sum_probs=62.6
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------CChHHHHHHHHHHHhHHhhcCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELN---------------LCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~---------------l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
..+++++.|+.|++.|+.+|+..|..++||+..++..||..++ |++.+|++||||+|+++|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3566778999999999999999999999999999999999999 9999999999999999999876
Q ss_pred CCC
Q psy16797 81 PED 83 (99)
Q Consensus 81 ~~~ 83 (99)
...
T Consensus 83 ~~~ 85 (95)
T 2cuf_A 83 IAA 85 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 43
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=6.6e-20 Score=105.04 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=56.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 22 RARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 22 r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
..|..||.+|+.+|+..|..++||+..++.+||..+||+..+|++||+|+|+++|+.....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 3556799999999999999999999999999999999999999999999999999976554
No 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=6.9e-20 Score=108.04 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCchhhccc
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDNLEYKLH 90 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~~~~~~~ 90 (99)
.||.+|+..|+..|..++||+..++.+||..+||++.+|++||||||+++++.............
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~~~~~~~ 81 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAG 81 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCCCCCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhcccCCCC
Confidence 79999999999999999999999999999999999999999999999999997766654444333
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=106.54 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCC
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPED 83 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~ 83 (99)
..+.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+......
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~ 71 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRS 71 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCC
Confidence 3446889999999999999999999999999999999999999999999999999999766544
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=2.4e-20 Score=111.63 Aligned_cols=66 Identities=47% Similarity=0.706 Sum_probs=56.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+....
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 345667789999999999999999999999999999999999999999999999999999987543
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.82 E-value=8.3e-20 Score=104.01 Aligned_cols=64 Identities=23% Similarity=0.398 Sum_probs=59.3
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCc
Q psy16797 21 KRARTAYTSNQLLALEKEF---NQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDN 84 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f---~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~ 84 (99)
++.|+.|+..|+.+|+.+| ..++||+..++..||..+||+..+|++||+|+|+++|+.......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccccc
Confidence 5788999999999999999 899999999999999999999999999999999999997765443
No 48
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.82 E-value=1.1e-20 Score=109.63 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=57.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 15 DEKKGKKRARTAYTSNQLLALEKEFNQ-----QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 15 ~~~~~~~r~r~~~s~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
...++++|.|+.|+.+|+..|+ .|.. ++||+..++.+||..+||++.+|++||||+|+++++
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3455677899999999999999 7999 999999999999999999999999999999999876
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=103.86 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+.....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 456889999999999999999999999999999999999999999999999999999876543
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=100.05 Aligned_cols=54 Identities=43% Similarity=0.759 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999984
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=105.64 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=60.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCc
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQ---QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDN 84 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~ 84 (99)
..++++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|+++++.......
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 4466778999999999999999987 5999999999999999999999999999999999887655544
No 52
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.81 E-value=1.2e-19 Score=105.82 Aligned_cols=62 Identities=27% Similarity=0.342 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQ---QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
+++.+++|+..|+.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|+++|+....
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 3455667999999999999999 9999999999999999999999999999999999997554
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.81 E-value=7.7e-20 Score=107.33 Aligned_cols=64 Identities=23% Similarity=0.398 Sum_probs=58.6
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCc
Q psy16797 21 KRARTAYTSNQLLALEKEF---NQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDN 84 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f---~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~ 84 (99)
+|.|+.|+..|+.+|+.+| ..++||+..++..||..+||+..+|++||+|+|+++|+.......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccccc
Confidence 5788999999999999999 899999999999999999999999999999999999997655443
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=7.9e-20 Score=101.67 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 20 KKRARTAYTSNQLLALEKEF---NQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f---~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
.++.|+.|+..|+.+|+.+| ..++||+..++..||..+||+..+|++||+|+|+++|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999 89999999999999999999999999999999999886
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.80 E-value=1.2e-19 Score=117.74 Aligned_cols=65 Identities=28% Similarity=0.353 Sum_probs=52.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
.++++|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45667789999999999999999999999999999999999999999999999999999997754
No 56
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.80 E-value=1.6e-19 Score=116.65 Aligned_cols=62 Identities=31% Similarity=0.493 Sum_probs=54.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
.++++|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34667799999999999999999999999999999999999999999999999999999985
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.80 E-value=2.8e-19 Score=98.24 Aligned_cols=55 Identities=31% Similarity=0.406 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 24 RTAYTSNQLLALEKEFNQ---QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
+++|+..|+.+|+..|.. ++||+..++..||..+||+..+|++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 9999999999999999999999999999999999874
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.3e-19 Score=103.48 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=56.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCCc
Q psy16797 23 ARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPEDN 84 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~~ 84 (99)
.+..+|..|+.+|+..|..++||+..++..||..+||+..+|++||+|+|+++++.......
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 34459999999999999999999999999999999999999999999999999987766543
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=113.88 Aligned_cols=62 Identities=31% Similarity=0.515 Sum_probs=58.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
..++++|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 44567778999999999999999999999999999999999999999999999999999986
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.79 E-value=3.9e-19 Score=104.37 Aligned_cols=61 Identities=31% Similarity=0.404 Sum_probs=56.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQ---QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
..++++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|+++|.
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 3456667899999999999999999 999999999999999999999999999999999873
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.79 E-value=3.2e-19 Score=113.79 Aligned_cols=62 Identities=29% Similarity=0.488 Sum_probs=55.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
.++++|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34566789999999999999999999999999999999999999999999999999999985
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=2e-19 Score=102.37 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 20 KKRARTAYTSNQLLALEKEF-NQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f-~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
..+.+.+++..|+..|+..| ..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~ 69 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCC
Confidence 34566678888999999999 99999999999999999999999999999999999998654
No 63
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=5.9e-19 Score=98.38 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=56.2
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQ-QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~-~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
..+.++|.|+.|+.+|+.+|+..|.. ++||+...+..||..+||++.+|++||||+|--.+
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 34577889999999999999999999 99999999999999999999999999999997543
No 64
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=104.42 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=59.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh---------------------CCChHHHHHHHHHHHhHH
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKEL---------------------NLCERQIKIWFQNRRMKK 75 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l---------------------~l~~~~V~~WFqNrR~k~ 75 (99)
.++++|.|+.|++.|+.+|+..|..++||+..++.+||..+ ++++.+|++||+|||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45677899999999999999999999999999999999999 799999999999999999
Q ss_pred hhcCC
Q psy16797 76 KKGKT 80 (99)
Q Consensus 76 kr~~~ 80 (99)
++...
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 88643
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.77 E-value=6.2e-19 Score=105.83 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=54.0
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------hC---CChHHHHHHHHHHHhH
Q psy16797 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKE------------------LN---LCERQIKIWFQNRRMK 74 (99)
Q Consensus 16 ~~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~------------------l~---l~~~~V~~WFqNrR~k 74 (99)
..++.++.|+.|+..|+.+|+..|..++||+...+.+||.. +| |++.+|++||||+|++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34566779999999999999999999999999999999999 88 9999999999999999
Q ss_pred HhhcCCC
Q psy16797 75 KKKGKTP 81 (99)
Q Consensus 75 ~kr~~~~ 81 (99)
++++...
T Consensus 85 ~k~k~~~ 91 (99)
T 1lfb_A 85 EAFRHKL 91 (99)
T ss_dssp TSCCC--
T ss_pred HHHhchh
Confidence 8876644
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=97.22 Aligned_cols=52 Identities=27% Similarity=0.444 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
.+..|+..|+..|..++||+..++.+||..+||+..+|++||+|+|.++|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 5799999999999999999999999999999999999999999999999874
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.77 E-value=8.6e-19 Score=112.75 Aligned_cols=61 Identities=28% Similarity=0.451 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 18 KGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 18 ~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
++++|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4667789999999999999999999999999999999999999999999999999999984
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=98.15 Aligned_cols=57 Identities=42% Similarity=0.754 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
...+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 457899999999999999999999999999999999999999999999999987654
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=95.51 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
+..++..|+..|+..|..++||+..++..||..+||++.+|++||||||+|.++.+
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 34567999999999999999999999999999999999999999999999877643
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.75 E-value=1.9e-18 Score=111.92 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=54.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCC
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPE 82 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~ 82 (99)
..+.+|.|+.|+..|+..|+..|..++||+...+..||..+||++.+|++||||+|+++|+.....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 345677999999999999999999999999999999999999999999999999999998865543
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.9e-18 Score=95.28 Aligned_cols=51 Identities=27% Similarity=0.366 Sum_probs=47.1
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 29 SNQLLALEKEF-NQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 29 ~~q~~~L~~~f-~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
+.++..||..| ..++||+..++.+||..+||++++|++||||||+++|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 45799999999 6799999999999999999999999999999999998754
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.6e-17 Score=93.25 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCCCC
Q psy16797 25 TAYTSNQLLALEKEFN---QQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTPED 83 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~---~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~~~ 83 (99)
..|+++++.+|+.+|. .++||+..++..||..+||+..+|++||+|+|+++++....+.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 3699999999999999 9999999999999999999999999999999999998765543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.63 E-value=1.8e-16 Score=105.15 Aligned_cols=61 Identities=25% Similarity=0.386 Sum_probs=53.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CChHHHHHHHHHHHhHH
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELN---------------------LCERQIKIWFQNRRMKK 75 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~---------------------l~~~~V~~WFqNrR~k~ 75 (99)
.++.+|.|+.|++.|+..|+..|..++||+...+.+||..++ +++.+|++||+|||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 345677899999999999999999999999999999999999 99999999999999987
Q ss_pred hh
Q psy16797 76 KK 77 (99)
Q Consensus 76 kr 77 (99)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=86.87 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 25 TAYTSNQLLALEKEFNQ---QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
.-|++.+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.+.++..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 35889999999999987 99999999999999999999999999999999988754
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-15 Score=83.02 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHH
Q psy16797 29 SNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKK 75 (99)
Q Consensus 29 ~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~ 75 (99)
+.|+..|+.+|..|++|+.+++..||..+||+...|++||+|+|+.-
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999999999999999743
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=98.59 Aligned_cols=59 Identities=25% Similarity=0.435 Sum_probs=52.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CChHHHHHHHHHHHhHH
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELN---------------------LCERQIKIWFQNRRMKK 75 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~---------------------l~~~~V~~WFqNrR~k~ 75 (99)
.++.+|.|+.|++.|+.+|+..|..++||+..+|.+||..+| |++.+|++||+|||+..
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 445677899999999999999999999999999999999987 89999999999999753
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.44 E-value=1.1e-13 Score=98.87 Aligned_cols=55 Identities=25% Similarity=0.493 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 22 RARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 22 r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
+.+..++..++..|+..|..++||+..+|.+||..+||+.+||++||||||.|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3466799999999999999999999999999999999999999999999998865
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.69 E-value=1.8e-10 Score=56.95 Aligned_cols=23 Identities=65% Similarity=0.913 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHHhhcCCCCCc
Q psy16797 62 RQIKIWFQNRRMKKKKGKTPEDN 84 (99)
Q Consensus 62 ~~V~~WFqNrR~k~kr~~~~~~~ 84 (99)
+||+|||||||+|||+.......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 47999999999999998766433
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.00048 Score=38.16 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNr 71 (99)
.++.....|+.+|.....+.......|+.+.+|+..+|+-||-.+
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 444556899999999999999999999999999999999999653
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=93.13 E-value=0.25 Score=25.55 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
+..|+.++.......+.. ..+.......+|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 456888887666555443 3321223568899999999999999753
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=92.92 E-value=0.65 Score=27.51 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 23 ARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.|..+|.++...+-..+..++.+.. ..+|..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 5678999998777777755655542 35789999999999999987665
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=90.12 E-value=1.5 Score=24.38 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=33.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy16797 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR 72 (99)
++.+..++.++....-..+. ... ...++|..+|++...|..|...-.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34566789988655555554 332 255789999999999999985433
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.62 E-value=1 Score=23.36 Aligned_cols=50 Identities=14% Similarity=-0.107 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
.+++.+..++...|-.. ....++|..+|++...|+.+...-+.+.++...
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 47788888888765432 225678999999999999999988888776543
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=88.43 E-value=1.9 Score=23.95 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
+++.+..+|...|-.. ....+||..+|++...|+.+...-+.+.++.
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 6677777776654322 2356789999999999999999888887764
No 85
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=86.91 E-value=2.8 Score=23.61 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
..+++.+..+|...+.- + ...+||..+|++...|+.+..+-+.+.+....
T Consensus 26 ~~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG--L----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 45899999998886432 2 24678999999999999999988888776543
No 86
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=86.76 E-value=2.2 Score=22.28 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
.+++.+..++...|..+.+.. ....++|..+|++...|+.+...-+.+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888899988883321111 2356789999999999999998887777654
No 87
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.53 E-value=2.9 Score=23.38 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 24 RTAYTSNQLLALEKEFNQQ-NYILRAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~-~~p~~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
|..++.++....-..+... . .....+|..+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888765555444322 2 23567899999999999999864
No 88
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=86.12 E-value=2.8 Score=22.90 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
-..+++.+..+|..++. . ....+||..+|++...|+.+..+-+.+.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 34689999999888532 2 235678999999999999999877766544
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=84.47 E-value=4.2 Score=24.14 Aligned_cols=47 Identities=15% Similarity=0.033 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
.+++.+..++. .|- ......+||..+|++...|+.+...-+.+.++.
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35556656665 322 222456789999999999999998888877764
No 90
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=84.10 E-value=3.3 Score=21.96 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
+++.+..++.-++. .+ ...++|..+|++...|+.+..+-+.+.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 56777777776432 22 24579999999999999999877766554
No 91
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=83.90 E-value=2.3 Score=25.90 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
.+++.+..++.-.|- ......+||..+|++...|+......|.+.++....
T Consensus 93 ~Lp~~~r~vl~L~~~-----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~ 143 (157)
T 2lfw_A 93 RMTPLSRQALLLTAM-----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRA 143 (157)
T ss_dssp TSCTTHHHHHTTTSS-----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred hCCHHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666644332 223357899999999999999999988888876543
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=83.25 E-value=4.7 Score=23.08 Aligned_cols=47 Identities=17% Similarity=0.041 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
...+++.+..+|.-.+.-- ...+||..+|++...|+.+..+-+.+..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4569999999997765422 2478999999999999999987666544
No 93
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=82.20 E-value=3 Score=23.09 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
..+++.+..+|.-++. .+. ..+||..+|++...|+.+..+-+.+.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GYS----NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4588888888877543 322 3468999999999999999877766554
No 94
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=82.14 E-value=2.8 Score=19.65 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
.++..+...+...+.. .. ...++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 4677766555455542 22 2567899999999999999853
No 95
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=81.70 E-value=5.9 Score=23.18 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
.+++.+..++...|...- ...++|..+|++...|+.+...-+.+.+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 367888888877654321 256789999999999999999888877654
No 96
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=81.03 E-value=4.3 Score=21.10 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 23 ARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
.-..+++.+..+|..++ ..+ ...++|..+|++...|..+...-+.+.+.
T Consensus 8 ~~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 34568899999988853 232 35678999999999999999876666544
No 97
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=80.74 E-value=0.96 Score=21.79 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
++.++...+...+.. . . ...++|..+|++...|..|+..
T Consensus 6 ~~~~~~~~i~~l~~~-g-~---s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 6 INKHEQEQISRLLEK-G-H---PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SCTTHHHHHHHHHHT-T-C---CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHc-C-C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 445554444444543 2 2 3567899999999999999854
No 98
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=80.73 E-value=4.6 Score=21.28 Aligned_cols=50 Identities=8% Similarity=0.029 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
.+++.+..++...|..... ......++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788888999888752110 0122457899999999999999988888877
No 99
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=80.56 E-value=5.9 Score=22.45 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHH-hhc-CCCC-HHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 24 RTAYTSNQLLALEKEF-NQQ-NYIL-RAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f-~~~-~~p~-~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
+..|+.++....-..+ ... .+.+ ......+|..+|+++.+|..|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888865444433 321 1222 245677999999999999999864
No 100
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=80.28 E-value=5.5 Score=21.87 Aligned_cols=53 Identities=8% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
.+++.+..++...|-...- ......+||..+|++...|+.+...-+.+.+...
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888752100 0123567899999999999999988887777644
No 101
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=78.63 E-value=3.4 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 51 HQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 51 ~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
.++|..+|++...|+.+..+-+.+.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 578999999999999999877766554
No 102
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=78.33 E-value=3.9 Score=26.01 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
.+++.+..+|...|-. .....+||..+|++...|+.+...-+.+.++.
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3566666666666532 12356789999999999999999888887763
No 103
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=76.31 E-value=9.1 Score=22.26 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
.+++.+..++...|-.. ....++|..+|++...|+.+...-+.+.+..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36777877777765322 1356789999999999999999888877664
No 104
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=75.32 E-value=3.4 Score=22.46 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqN 70 (99)
..+||..||++...|..|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999865
No 105
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=74.20 E-value=9.2 Score=21.30 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHH
Q psy16797 23 ARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKK 75 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~ 75 (99)
....+|+.+..+|.-.+. .+ ...+||..+|++...|+....+-..|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 455799999999988763 22 356789999999999999887665543
No 106
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=73.59 E-value=4.7 Score=24.50 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHH-HHh--CCChHHHHHHHHHHH
Q psy16797 21 KRARTAYTSNQLLALEKEF-NQQNYILRAKRHQLA-KEL--NLCERQIKIWFQNRR 72 (99)
Q Consensus 21 ~r~r~~~s~~q~~~L~~~f-~~~~~p~~~~~~~la-~~l--~l~~~~V~~WFqNrR 72 (99)
++.|.++|.+|...+..++ ..++-.+..+....| ..+ +++..+|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4678889999999999999 677777765554432 266 788889999997754
No 107
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=73.41 E-value=11 Score=23.01 Aligned_cols=30 Identities=7% Similarity=-0.007 Sum_probs=25.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
..+||..+|++...|+.+...-+.+.++..
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998888887643
No 108
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=73.30 E-value=15 Score=23.78 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
...+|+.+..+|.-.+. .+ .-.+||..+|++...|+....+-+.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 45699999999877543 22 24678999999999999999887766543
No 109
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=72.92 E-value=13 Score=24.40 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
..+++.+..++.-.++ .+ .-.++|..+|++...|+....+-+.+.+.
T Consensus 196 ~~L~~~erevl~L~~~--G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4688999888887643 32 25678999999999999999887777655
No 110
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=71.74 E-value=3.8 Score=21.82 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999998754
No 111
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=69.91 E-value=3.4 Score=20.39 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy16797 29 SNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 29 ~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFq 69 (99)
+.+...+...+. ..+ ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 455444444443 232 355789999999999999974
No 112
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=69.15 E-value=20 Score=23.08 Aligned_cols=48 Identities=4% Similarity=-0.048 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 23 ARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
....+|+.+..+|.-.+. . ..-.+||..+|++...|+....+-+.|..
T Consensus 170 ~~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIAV--G----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 345699999999876532 2 23567899999999999999988776654
No 113
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=67.27 E-value=3.3 Score=25.32 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-+..-...|....| . .....||...|++...+-.+|.|+-.
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 35666667888888 5 67889999999999999999988654
No 114
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=66.84 E-value=15 Score=20.91 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcC
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~ 79 (99)
.+++.+..++.-.|-.+.. ......++|..+|++...|+........+.|...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3677788888777753321 1134677899999999999999888777776643
No 115
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=65.06 E-value=4.4 Score=20.27 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...+|..+|++...|..|..++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999999754
No 116
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=64.24 E-value=4.7 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...+|..+|++...|..|..++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 4678999999999999998753
No 117
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=63.84 E-value=9 Score=23.61 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 29 SNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 29 ~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
..-+..-...|....|-. .....||...|++...+-..|.|+-.
T Consensus 14 ~~Il~aA~~lF~~~Gy~~-ts~~~IA~~aGvsk~tlY~~F~sKe~ 57 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRD 57 (202)
T ss_dssp HHHHHHHHHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHHHHhCccc-CCHHHHHHHhCCChHHHHHHhCCHHH
Confidence 344566666788888765 44778899999999999999988765
No 118
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=61.56 E-value=5.4 Score=20.29 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999997643
No 119
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=60.83 E-value=5.9 Score=20.48 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|..++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~ 47 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999999754
No 120
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=60.17 E-value=5.6 Score=20.41 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=17.3
Q ss_pred HHHHHHHhCCChHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWF 68 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WF 68 (99)
...||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999997
No 121
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=59.68 E-value=8.8 Score=20.02 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.1
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqN 70 (99)
..++|..||++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 356899999999999999865
No 122
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=58.91 E-value=6.7 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4578999999999999999764
No 123
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=58.23 E-value=6.8 Score=20.19 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|..++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999998764
No 124
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=58.10 E-value=25 Score=20.31 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNr 71 (99)
..++.++...+...+.. .. ...++|..+|++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 45777777666666643 32 24678999999999999999753
No 125
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=58.00 E-value=6.8 Score=20.78 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45789999999999999997653
No 126
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=57.92 E-value=7 Score=19.71 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..++|..+|++...|..|..+++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987643
No 127
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=56.89 E-value=7.5 Score=20.12 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|..++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 4678999999999999999754
No 128
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=56.53 E-value=37 Score=21.93 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHH
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKK 75 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~ 75 (99)
...+|+.+..+|.-... . ..-.+||..+|+++..|+.-..+-+.|.
T Consensus 173 ~~~Lt~re~~vl~~~~~--G----~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEMLKWTAV--G----KTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHHHHHHT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 35688888888876532 2 2256789999999999999888766554
No 129
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=56.42 E-value=6.6 Score=24.08 Aligned_cols=41 Identities=12% Similarity=0.328 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 445555688888654 44677899999999999999988754
No 130
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=56.01 E-value=12 Score=19.92 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999998644
No 131
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=55.31 E-value=8.6 Score=23.54 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....| . .....||...|++...+-.+|.|+-.
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 4445556888887 5 67888999999999999999988654
No 132
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=54.91 E-value=17 Score=22.02 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-..|.++-.
T Consensus 22 l~aa~~lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (213)
T 2qtq_A 22 LQTASNIMREGDVVD-ISLSELSLRSGLNSALVKYYFGNKAG 62 (213)
T ss_dssp HHHHHHHHHHHTSSC-CCHHHHHHHHCCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCChhhHhHhcCCHHH
Confidence 556666688888755 33677899999999999999988754
No 133
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=54.60 E-value=19 Score=19.25 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy16797 24 RTAYTSNQLLALEKEFN-----QQNYILRAKRHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~-----~~~~p~~~~~~~la~~l~l~~~~V~~WFq 69 (99)
-..++..+...|...|. .+.+.+..+...+...+|++...+..+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 34577888888888885 35678888888888889999999988885
No 134
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=53.99 E-value=8.6 Score=19.91 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997644
No 135
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=53.92 E-value=10 Score=20.66 Aligned_cols=22 Identities=5% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGK 45 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4678999999999999999764
No 136
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=53.81 E-value=9.1 Score=19.55 Aligned_cols=22 Identities=14% Similarity=-0.085 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..++|..+|++...|..|..++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4678999999999999998753
No 137
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=53.63 E-value=8.7 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.429 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46789999999999999997643
No 138
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=53.42 E-value=11 Score=24.50 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCCCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 23 ARTAYTSNQ-LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 23 ~r~~~s~~q-~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.+...+.+. +..-...|....|-. .....||..+|++...+-.+|.|+-.
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 344455554 455666687777654 44677899999999999999988764
No 139
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=53.12 E-value=11 Score=20.24 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 140
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=52.22 E-value=48 Score=21.91 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
...+|+.+..+|.-... . ..-.+||..+|+++..|+....|-+.|..-
T Consensus 195 ~~~Lt~re~~vl~~~~~--G----~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSR--G----KTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCHHHHHHHHHHHT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 35799999999987743 2 235678999999999999999887766543
No 141
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=52.03 E-value=19 Score=20.22 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR 72 (99)
.++.++...+...+. ..+ + ..++|..+|++...|..|+..-+
T Consensus 17 ~~s~~~r~~i~~~~~-~g~-s---~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI-R---PCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC-C---HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC-C---HHHHHHHHCcCHHHHHHHHHHHH
Confidence 577877666655564 332 2 45689999999999999997543
No 142
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=51.80 E-value=0.092 Score=33.12 Aligned_cols=30 Identities=7% Similarity=0.034 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCH
Q psy16797 18 KGKKRARTAYTSNQLLALEKEFNQQNYILR 47 (99)
Q Consensus 18 ~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~ 47 (99)
.+.+|.|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 455678899999999999999999998864
No 143
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=51.59 E-value=7.6 Score=23.14 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=20.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCCC
Q psy16797 33 LALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKTP 81 (99)
Q Consensus 33 ~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~~ 81 (99)
.+..-.|+.|+||..+ |---.. .|||.+|+.++..
T Consensus 16 RiIkiLyQSNPyP~pe---------GTRqaR-----RNRRRRWR~RQrQ 50 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPE---------GTRQAR-----RNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHSSCCCCCC---------CCTTTH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCC---------Cchhhh-----HhHHHHHHHHHHH
Confidence 4555568999998864 111111 4777777776543
No 144
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=51.54 E-value=36 Score=20.23 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCChH
Q psy16797 23 ARTAYTSNQLLALEKEFN-----QQNYILRAKRHQLAKELNLCER 62 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~-----~~~~p~~~~~~~la~~l~l~~~ 62 (99)
.+..+|++|+..|...|. .+.+.+..+...+...+|..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 456699999999999985 3568899988888888886553
No 145
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=50.68 E-value=12 Score=20.23 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=17.1
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFq 69 (99)
..++|..+|++...++.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34689999999999999964
No 146
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=50.28 E-value=7.8 Score=24.29 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-++.-...|....|-. .....||...|++...|-.+|.++-.
T Consensus 19 Il~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~ 60 (208)
T 3v6g_A 19 IVEAAERVIARQGLGG-LSHRRVAAEANVPVGSTTYYFNDLDA 60 (208)
T ss_dssp HHHHHHHHHHHHCTTC-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchhHHHHcCCHHH
Confidence 3555556688888755 34677899999999999999988754
No 147
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=49.99 E-value=11 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR 72 (99)
++.....|....|-. .....||...|++...+-..|.|+-
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHH
Confidence 555566688888754 4467789999999999999998754
No 148
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=49.72 E-value=29 Score=18.72 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy16797 26 AYTSNQLLALEKEFNQ-----QNYILRAKRHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WFq 69 (99)
.++..+...+...|.. +.+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3577788888888753 4567777777777778888877776664
No 149
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=49.23 E-value=15 Score=18.49 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...+|..+|++...|..|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4578999999999999999543
No 150
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=49.23 E-value=13 Score=22.91 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKAD 76 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHH
Confidence 445555688877654 44677899999999999999988654
No 151
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=48.98 E-value=9.1 Score=23.04 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-++.-...|....|- .....||...|++...|-..|.|+-.
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~ 54 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDE 54 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 355666668888877 66788999999999999999988754
No 152
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=48.63 E-value=4.6 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=22.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHhHHhhc
Q psy16797 52 QLAKELNLCERQIKIWFQNRRMKKKKG 78 (99)
Q Consensus 52 ~la~~l~l~~~~V~~WFqNrR~k~kr~ 78 (99)
+||..+|++...|+.+...-+.+.++.
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467778999999999999888887763
No 153
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=47.76 E-value=13 Score=19.52 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|..++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFE 47 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4678999999999999998764
No 154
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=47.65 E-value=11 Score=23.18 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-.+|.++-.
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 455555688888654 44778899999999999999998765
No 155
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=46.99 E-value=7.6 Score=23.37 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|... .......||...|++...+-.+|.|+-.
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTD 58 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34444556665 5566788999999999999999988654
No 156
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=46.83 E-value=15 Score=19.19 Aligned_cols=40 Identities=3% Similarity=0.072 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNr 71 (99)
..++...+..+...... ...++|..+|++...|..|=.+.
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~ 48 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGN 48 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCC
Confidence 35777777777655432 24678999999999999998764
No 157
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=46.76 E-value=11 Score=23.30 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|.... .......||...|++...|-.+|.|+-.
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 445555577777 5566888999999999999999988764
No 158
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=46.69 E-value=6.8 Score=23.89 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhH
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMK 74 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k 74 (99)
+......|....|-. .....||...|++...+-.+|.|+-.=
T Consensus 18 l~aA~~lf~e~G~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L 59 (192)
T 2fq4_A 18 LSASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAV 59 (192)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHCCCHHHH
Confidence 445555588888755 447788999999999999999987653
No 159
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=46.35 E-value=35 Score=18.57 Aligned_cols=43 Identities=5% Similarity=0.077 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy16797 27 YTSNQLLALEKEFN-----QQNYILRAKRHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 27 ~s~~q~~~L~~~f~-----~~~~p~~~~~~~la~~l~l~~~~V~~WFq 69 (99)
++..+...+...|. .+.+.+..+...+...+|++...+..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46677777888774 34677888888877888888888877775
No 160
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=46.26 E-value=13 Score=22.14 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-++.....|....|-. .....||...|++...+-.+|.|+-.
T Consensus 14 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 14 ILETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 3556666688877655 44777899999999999999988754
No 161
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=46.05 E-value=7.1 Score=24.76 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=34.8
Q ss_pred CCCCCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 22 RARTAYTSNQ-LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 22 r~r~~~s~~q-~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+.+...+.+. +......|....|-. .....||...|++...+-..|.|+-.
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~ 71 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRD 71 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 3445556654 556666677777643 34677899999999999999988765
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=46.04 E-value=12 Score=19.47 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|-.++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4568999999999999998764
No 163
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=45.59 E-value=9 Score=24.42 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...|-.+|.|+-.
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~ 69 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQ 69 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHH
Confidence 445555688888754 44677899999999999999988654
No 164
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=45.55 E-value=14 Score=19.42 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|-.++
T Consensus 30 q~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4578999999999999998764
No 165
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=44.99 E-value=8 Score=23.57 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....| . .....||...|++...+-..|.|+-.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 61 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWG 61 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHH
Confidence 4455566888888 5 57888999999999999999988654
No 166
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=44.67 E-value=12 Score=23.08 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|- .....||...|++...|-.+|.|+-.
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~ 57 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKED 57 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHH
Confidence 44445558877776 56788999999999999999998765
No 167
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=44.57 E-value=20 Score=18.72 Aligned_cols=23 Identities=4% Similarity=0.096 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...||..+|++...|..++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999997754
No 168
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=44.41 E-value=13 Score=22.34 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-.+|.++-.
T Consensus 23 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 23 MEIALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444555588888755 34677899999999999999988654
No 169
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=44.29 E-value=5.9 Score=24.00 Aligned_cols=41 Identities=10% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDE 60 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHH
Confidence 444555577777654 34677899999999999999988754
No 170
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=44.21 E-value=15 Score=19.75 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|..++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999999764
No 171
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=43.28 E-value=16 Score=20.26 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|..++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999999763
No 172
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=42.88 E-value=34 Score=18.80 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q psy16797 49 KRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 49 ~~~~la~~l~l~~~~V~~WFqN 70 (99)
....||..+|+++..+...|+.
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4567788888888887777654
No 173
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=42.81 E-value=19 Score=18.97 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqN 70 (99)
...+|..+|++...|..|...
T Consensus 16 q~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 16 QEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp HHHHHHHSSSCHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHh
Confidence 567899999999999999843
No 174
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=42.50 E-value=19 Score=19.35 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999997643
No 175
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=42.24 E-value=8.1 Score=24.37 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...|-.+|.++-.
T Consensus 49 l~aA~~l~~~~G~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 49 LDACADLLDEVGYDA-LSTRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcChhh-ccHHHHHHHHCCCchhHHHHcCCHHH
Confidence 344445577777654 34677899999999999999988654
No 176
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=42.17 E-value=17 Score=19.06 Aligned_cols=22 Identities=27% Similarity=0.128 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|-.++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 4578999999999999998764
No 177
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=41.73 E-value=45 Score=18.51 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhC--CChHHHHHHHH
Q psy16797 23 ARTAYTSNQLLALEKEFN-----QQNYILRAKRHQLAKELN--LCERQIKIWFQ 69 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~-----~~~~p~~~~~~~la~~l~--l~~~~V~~WFq 69 (99)
....++..++..|...|. .+.+.+..+...+...+| ++...|..+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345688899999999985 457899999988888877 56677888875
No 178
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=40.52 E-value=19 Score=18.99 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqN 70 (99)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999876
No 179
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=40.38 E-value=23 Score=17.79 Aligned_cols=22 Identities=5% Similarity=0.012 Sum_probs=18.6
Q ss_pred HHHHHHHhC--CChHHHHHHHHHH
Q psy16797 50 RHQLAKELN--LCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~--l~~~~V~~WFqNr 71 (99)
..++|..+| ++...|..|-.++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCC
Confidence 457899999 9999999998754
No 180
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=40.23 E-value=20 Score=20.43 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHhCCChHHHHHHHH
Q psy16797 51 HQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 51 ~~la~~l~l~~~~V~~WFq 69 (99)
.++|..+|++...++.|-.
T Consensus 6 ~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 6 KQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHH
Confidence 4679999999999999964
No 181
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=40.21 E-value=21 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|-.++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~ 46 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGE 46 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4568999999999999999764
No 182
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=40.02 E-value=27 Score=20.95 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhH
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMK 74 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k 74 (99)
+......|....|-. .....||...|++...+-.+|.++-.=
T Consensus 9 l~aA~~lf~~~G~~~-~s~~~IA~~agvsk~t~Y~~F~sK~~L 50 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEA-TSVQDLAQALGLSKAALYHHFGSKEEI 50 (190)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 445556688777755 336778999999999999999887653
No 183
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=39.87 E-value=59 Score=23.27 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
+++.+..++...|..... ......+||..+|++...|+......+.+.|
T Consensus 361 L~~rer~Vl~lr~~L~~~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDG-REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC------CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 556666666666643211 2345678999999999999999998888887
No 184
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=39.72 E-value=29 Score=21.09 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 23 l~aA~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 63 (218)
T 3gzi_A 23 ILAARNLFIERPYAQ-VSIREIASLAGTDPGLIRYYFGSKEK 63 (218)
T ss_dssp HHHHHHHHHTSCCSC-CCHHHHHHHHTSCTHHHHHHHSSHHH
T ss_pred HHHHHHHHHHCCCCc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344455588888765 34677899999999999999988754
No 185
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=39.67 E-value=21 Score=20.33 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=16.6
Q ss_pred HHHHHHhCCChHHHHHHHH
Q psy16797 51 HQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 51 ~~la~~l~l~~~~V~~WFq 69 (99)
-++|..+|++...++.|=.
T Consensus 5 ~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 5 GQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHH
Confidence 4679999999999999964
No 186
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.77 E-value=15 Score=23.89 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCCCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 23 ARTAYTSNQ-LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 23 ~r~~~s~~q-~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.+...+.+. +......|....|-. .....||..+|++...+-..|.|+-.
T Consensus 15 ~r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 15 AKPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAE 65 (243)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHH
T ss_pred CCcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHH
Confidence 344456554 556666688878654 44677899999999999999988765
No 187
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=38.68 E-value=24 Score=21.78 Aligned_cols=38 Identities=8% Similarity=0.097 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 35 LEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 35 L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 33 A~~lf~e~G~~~-~s~~~IA~~aGvskgtlY~yF~sKe~ 70 (214)
T 2oer_A 33 AVQVLASEGAQR-FTTARVAERAGVSIGSLYQYFPNKAA 70 (214)
T ss_dssp HHHC------CC-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHhhCccc-ccHHHHHHHhCCCCchHHHhCCCHHH
Confidence 334477777654 44677899999999999999988754
No 188
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=38.17 E-value=16 Score=19.87 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997644
No 189
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=37.82 E-value=12 Score=22.41 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 54 (206)
T 3dew_A 14 MEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEG 54 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHH
T ss_pred HHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 455555677777543 44677899999999999999998754
No 190
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=37.72 E-value=82 Score=22.86 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhh
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr 77 (99)
+++.+..++...|..... ......+||..+|++...|+......+.+.|+
T Consensus 376 L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR~ 425 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLKY 425 (438)
T ss_pred CCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 566666666666643211 22456789999999999999999888888773
No 191
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=37.61 E-value=10 Score=23.29 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe~ 55 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKDE 55 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 555566688877654 34677899999999999999988654
No 192
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=37.59 E-value=22 Score=19.60 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|-.++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~ 67 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 4568999999999999998654
No 193
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.47 E-value=29 Score=21.16 Aligned_cols=45 Identities=13% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCh--HHHHHHH
Q psy16797 24 RTAYTSNQLLALEKEFN-----QQNYILRAKRHQLAKELNLCE--RQIKIWF 68 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~-----~~~~p~~~~~~~la~~l~l~~--~~V~~WF 68 (99)
++.+|++|+..|...|. .+.+.+..+...+...+|+.+ ..+...|
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 53 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLM 53 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHH
Confidence 46789999999999985 356788888888888887654 4444443
No 194
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=37.13 E-value=24 Score=21.17 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 30 NQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 30 ~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.-+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 11 ~Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 53 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDG-TTLDDISKSVNIKKASLYYHYDNKEE 53 (192)
T ss_dssp HHHHHHHHHHHHHCTTT-CCHHHHHHHTTCCHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHcCccc-CCHHHHHHHhCCChHHHHHHCCCHHH
Confidence 34556666688888754 44677899999999999999988754
No 195
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=37.03 E-value=61 Score=20.53 Aligned_cols=36 Identities=8% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHH
Q psy16797 30 NQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIK 65 (99)
Q Consensus 30 ~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~ 65 (99)
.-+.+|...=+...|.+.+....+|..++++...|-
T Consensus 26 ~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 26 AIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp GHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 345555555455689999999999999999998764
No 196
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=36.57 E-value=5.6 Score=24.41 Aligned_cols=41 Identities=15% Similarity=0.336 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-..|.|+-.
T Consensus 32 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 72 (217)
T 3mvp_A 32 LQVAKDLFSDKTYFN-VTTNEIAKKADVSVGTLYAYFASKED 72 (217)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 344445577777533 34667899999999999999988654
No 197
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=36.54 E-value=29 Score=18.84 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=23.5
Q ss_pred HHHHHHHHhhc-CCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy16797 32 LLALEKEFNQQ-NYILRAKRHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 32 ~~~L~~~f~~~-~~p~~~~~~~la~~l~l~~~~V~~WFq 69 (99)
++.|......+ .+| ....+||..+|++...|+.-..
T Consensus 10 L~~I~~~i~~~~g~~--psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 10 ISIVQERQNMDDGAP--VKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp HHHHHHHHHHHTTSC--EEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhhccCCC--cCHHHHHHHHCCCHHHHHHHHH
Confidence 33444444443 454 3467889999999988887664
No 198
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.53 E-value=15 Score=23.16 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=32.7
Q ss_pred CCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 26 AYTSNQ-LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 26 ~~s~~q-~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
..+.+. +..-...|.... ......||..+|++...+-..|.|+-.
T Consensus 10 ~~~r~~Il~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~ 55 (213)
T 2g7g_A 10 RLDRERIAEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAA 55 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHH
Confidence 344443 455555677666 456778999999999999999988765
No 199
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=36.34 E-value=24 Score=18.64 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|..+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45899999999999999997654
No 200
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=36.13 E-value=26 Score=20.82 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 8 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 48 (194)
T 3bqz_B 8 LGVAKELFIKNGYNA-TTTGEIVKLSESSKGNLYYHFKTKEN 48 (194)
T ss_dssp HHHHHHHHHHHTTTT-CCHHHHHHHTTCCHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHHH
Confidence 455556677777654 34677899999999999999987654
No 201
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=35.98 E-value=44 Score=20.83 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 25 TAYTSNQLLALEKEFNQQNYIL----RAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~----~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
..|+.++.......-...-.|. .....++|..+|++...+..|-..
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 3478887665433211110011 134678999999999999999874
No 202
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=35.94 E-value=24 Score=22.44 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-.+|.++-.
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444555577777643 34677899999999999999988654
No 203
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=35.82 E-value=23 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 16 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~t~Y~~F~sKe~ 56 (210)
T 3vib_A 16 MLAALETFYRKGIAR-TSLNEIAQAAGVTRDALYWHFKNKED 56 (210)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCcCHHHHHHHCCCHHH
Confidence 444555688888765 34677899999999999999998764
No 204
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=35.75 E-value=33 Score=20.91 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...+-.+|.++-.
T Consensus 14 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tiY~~F~sKe~ 54 (202)
T 2d6y_A 14 FEAAVAEFARHGIAG-ARIDRIAAEARANKQLIYAYYGNKGE 54 (202)
T ss_dssp HHHHHHHHHHHTTTS-CCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 555556688877654 34677899999999999999988754
No 205
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=35.64 E-value=29 Score=21.03 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...+-..|.|+-.
T Consensus 18 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~ 58 (197)
T 2hyt_A 18 LATARKVFSERGYAD-TSMDDLTAQASLTRGALYHHFGDKKG 58 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCTTHHHHHHSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 445556688888755 34677899999999999999988654
No 206
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=35.15 E-value=28 Score=21.29 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~ 57 (210)
T 2wui_A 17 LDAAERVFLEKGVGT-TAMADLADAAGVSRGAVYGHYKNKIE 57 (210)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 445555688888765 34677899999999999999998765
No 207
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=35.14 E-value=28 Score=19.82 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45689999999999999987643
No 208
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=35.00 E-value=19 Score=22.60 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...|-.+|.|+-.
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~ 90 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEA 90 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHHH
Confidence 344445577777643 34677899999999999999988754
No 209
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=34.80 E-value=14 Score=22.69 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-.+|.|+-.
T Consensus 21 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~sKe~ 61 (221)
T 3c2b_A 21 LDQALRLLVEGGEKA-LTTSGLARAANCSKESLYKWFGDRDG 61 (221)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHH
Confidence 455555677777644 44677899999999999999998765
No 210
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=34.70 E-value=52 Score=17.23 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHhhcCC
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~kr~~~ 80 (99)
++..+..+|..+=+.+-.....-.+.|...---+...|-.+.-|.|+-||-...
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN~ 58 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQ 58 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhhh
Confidence 445556666665555556666667777766666788999999999999987554
No 211
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=34.58 E-value=83 Score=19.55 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
..+|+.+..+|.-...- . ...+||..++++...|++...+=+.|..
T Consensus 148 ~~LT~rE~~vL~~l~~g---~---s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG---L---TNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCC---C---CHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 45899998888766442 2 3567899999999999999988776654
No 212
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=34.57 E-value=27 Score=20.07 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...||..+|++...|..|-.+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999997653
No 213
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=34.45 E-value=26 Score=19.39 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqN 70 (99)
...||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999976
No 214
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=34.42 E-value=16 Score=19.50 Aligned_cols=21 Identities=5% Similarity=0.146 Sum_probs=17.7
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqN 70 (99)
..+||..+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456899999999999998653
No 215
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=34.38 E-value=20 Score=21.83 Aligned_cols=42 Identities=12% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 16 Il~aA~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 57 (216)
T 3f0c_A 16 IINAAQKRFAHYGLCK-TTMNEIASDVGMGKASLYYYFPDKET 57 (216)
T ss_dssp HHHHHHHHHHHHCSSS-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCCCc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3555666688888754 33677899999999999999988654
No 216
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=34.17 E-value=57 Score=18.83 Aligned_cols=43 Identities=16% Similarity=0.034 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16797 28 TSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 28 s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNr 71 (99)
++.+...++.....-.- .+.....++..+|++...+..|+.--
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l 44 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQA 44 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 45555555555332211 12244579999999999999998643
No 217
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=34.10 E-value=16 Score=22.70 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 41 l~aA~~lf~~~G~~~-~t~~~IA~~AGvs~~tlY~~F~sKe~ 81 (221)
T 3g7r_A 41 LGTATRIFYAEGIHS-VGIDRITAEAQVTRATLYRHFSGKDD 81 (221)
T ss_dssp HHHHHHHHHHHCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 444555588888654 34677899999999999999988654
No 218
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=34.08 E-value=26 Score=19.67 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|..++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~ 48 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNN 48 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4578899999999999988654
No 219
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=34.03 E-value=33 Score=20.17 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|...+|-. .....||...|++...+-..|.|+-.
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 54 (188)
T 3qkx_A 14 FSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNKDE 54 (188)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCHHH
Confidence 445555688877654 44777899999999999999988654
No 220
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=33.60 E-value=20 Score=21.60 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhH
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMK 74 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k 74 (99)
+......|....|-. .....||...|++...+-.+|.++-.=
T Consensus 13 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 54 (195)
T 2dg7_A 13 KRAALELYSEHGYDN-VTVTDIAERAGLTRRSYFRYFPDKREV 54 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHTTCCHHHHHHHCSSTTGG
T ss_pred HHHHHHHHHhcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 555566688877644 346778999999999999999886543
No 221
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=33.54 E-value=27 Score=19.29 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||..+|++...|..|..++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~ 55 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQ 55 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999998764
No 222
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=33.37 E-value=29 Score=18.56 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999986643
No 223
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=33.14 E-value=27 Score=20.93 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 18 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (202)
T 3lwj_A 18 LTCSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKED 58 (202)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHHH
Confidence 445555588877644 44677899999999999999988653
No 224
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=33.13 E-value=30 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=16.6
Q ss_pred HHHHHHhCCChHHHHHHHH
Q psy16797 51 HQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 51 ~~la~~l~l~~~~V~~WFq 69 (99)
-++|..+|++...++.|=.
T Consensus 4 ~e~A~~~gvs~~tLR~ye~ 22 (135)
T 1q06_A 4 SDVAKITGLTSKAIRFYEE 22 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999964
No 225
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=33.07 E-value=9.1 Score=24.18 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhH
Q psy16797 27 YTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMK 74 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k 74 (99)
+++.+..+|...| .......+||..+|++...|+.+...-+.+
T Consensus 199 L~~~~r~vl~l~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRY-----YKDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHHHH-----hcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4444444554433 233456789999999999999988765544
No 226
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=33.06 E-value=13 Score=22.20 Aligned_cols=41 Identities=5% Similarity=0.065 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 16 l~aa~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSG-VGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCCccc-CCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 556666688877654 33667899999999999888887654
No 227
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=32.93 E-value=23 Score=21.65 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...+-.+|.|+-.
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~ 57 (210)
T 2xdn_A 17 IEAAERAFYKRGVAR-TTLADIAELAGVTRGAIYWHFNNKAE 57 (210)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCTTHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHHCCChHHHHHHhCCHHH
Confidence 444555688888765 44677899999999999999988765
No 228
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=32.74 E-value=34 Score=20.51 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 50 (185)
T 2yve_A 10 LRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRHA 50 (185)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCHHH
Confidence 455556688877654 44677899999999999999988654
No 229
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=32.57 E-value=30 Score=20.76 Aligned_cols=46 Identities=9% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCC-ChHHHHHHHHH
Q psy16797 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNL-CERQIKIWFQN 70 (99)
Q Consensus 20 ~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l-~~~~V~~WFqN 70 (99)
+....+.++++..+.+....... .....++...|| +...|-.|...
T Consensus 6 k~GRPtk~t~e~~e~I~~~i~~G-----~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 6 KAGRPSDYMPEVADDICSLLSSG-----ESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp ----CCSCCTTHHHHHHHHHHTT-----CCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-----CcHHHHHhcCCCCCHHHHHHHHHc
Confidence 33345678888877777776543 234556788899 88999999854
No 230
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=32.56 E-value=31 Score=20.96 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFq 69 (99)
.-++|..+|++...++.|=.
T Consensus 7 I~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34678999999999999964
No 231
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=32.16 E-value=57 Score=16.91 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=33.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---CChHHHHHHHHH
Q psy16797 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELN---LCERQIKIWFQN 70 (99)
Q Consensus 17 ~~~~~r~r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~---l~~~~V~~WFqN 70 (99)
.+..++.+..+|+++...|............. .||..++ -+..+++.=+.|
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~---~Ia~~~~~~~Rt~~qcr~Rw~~ 56 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWS---KILLHYKFNNRTSVMLKDRWRT 56 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHH---HHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHH---HHHHHcCcCCCCHHHHHHHHHH
Confidence 34556678889999999998887765533333 3455554 577777764444
No 232
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.04 E-value=31 Score=20.83 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFq 69 (99)
.-++|..+|++...++.|=.
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34689999999999999964
No 233
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=31.88 E-value=28 Score=20.21 Aligned_cols=23 Identities=0% Similarity=-0.042 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|-.+++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 34688999999999999987643
No 234
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=31.86 E-value=37 Score=18.51 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChHH----HHHHHHHH
Q psy16797 50 RHQLAKELNLCERQ----IKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~----V~~WFqNr 71 (99)
..+||..+|++... |..|-.++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~ 42 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGK 42 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCC
Confidence 46789999999999 99998764
No 235
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=31.79 E-value=13 Score=23.27 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhH
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMK 74 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k 74 (99)
++.....|....|-. .....||...|++...|-..|.|+-.=
T Consensus 45 l~AA~~lf~e~G~~~-~tv~~IA~~AGvs~~tlY~~F~sKe~L 86 (214)
T 2guh_A 45 VDAAGRAFATRPYRE-ITLKDIAEDAGVSAPLIIKYFGSKEQL 86 (214)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHcChhh-cCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 444555578877644 346778999999999999999987654
No 236
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=31.53 E-value=30 Score=20.89 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...+-..|.|+-.
T Consensus 16 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~gtlY~yF~sKe~ 56 (194)
T 2nx4_A 16 TAAAWRLIAARGIEA-ANMRDIATEAGYTNGALSHYFAGKDE 56 (194)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHhCcCHHH
Confidence 444455588888765 34677899999999999999988654
No 237
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=31.46 E-value=30 Score=20.87 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~ 60 (212)
T 3knw_A 20 LDSGFHLVLRKGFVG-VGLQEILKTSGVPKGSFYHYFESKEA 60 (212)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCChHHHHHHCCCHHH
Confidence 445555677777654 44677899999999999999988654
No 238
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=31.25 E-value=31 Score=20.45 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...+-..|.|+-.
T Consensus 8 l~aA~~lf~~~Gy~~-~s~~~Ia~~agvskgtlY~~F~sKe~ 48 (179)
T 2eh3_A 8 LEVSKELFFEKGYQG-TSVEEIVKRANLSKGAFYFHFKSKEE 48 (179)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCCcHHHHHHcCCHHH
Confidence 444555677777755 34677899999999999999987654
No 239
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=31.13 E-value=19 Score=23.16 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=33.9
Q ss_pred CCCCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 23 ARTAYTSNQ-LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 23 ~r~~~s~~q-~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.+...+.+. +......|....|-. .....||..+|++...+-..|.|+-.
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHH
Confidence 344455554 555666688877654 44677899999999999888887654
No 240
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=31.07 E-value=43 Score=20.40 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...+-..|.|+-.
T Consensus 18 l~aA~~lf~~~G~~~-ts~~~IA~~aGvsk~tlY~~F~sKe~ 58 (211)
T 3bhq_A 18 IQAATAAFISKGYDG-TSMEEIATKAGASKQTVYKHFTDKET 58 (211)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 445555688888754 44677899999999999999988654
No 241
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=30.97 E-value=87 Score=18.66 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 27 YTSNQLLALEKEFNQ----QNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 27 ~s~~q~~~L~~~f~~----~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++..+..+|-..+.. +++|+.. .||..+|+++..|....++=-.
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHH
Confidence 566666666665442 4667754 6899999999999999876544
No 242
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=30.49 E-value=28 Score=21.09 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 15 l~aA~~lf~~~G~~~-~t~~~Ia~~Agvs~gt~Y~yF~sKe~ 55 (204)
T 3anp_C 15 FRAAMELFRNRGFQE-TTATEIAKAAHVSRGTFFNYYPYKEA 55 (204)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCchHHHHHHcCCHHH
Confidence 445555688878754 34677899999999999999987654
No 243
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=30.39 E-value=17 Score=17.86 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 33 LALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 33 ~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
..|..+-...+-.+.+...+.|..+|+....|...|..
T Consensus 10 rklkefvrrhqeitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 10 RKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444433333345566777899999999999999865
No 244
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=30.38 E-value=33 Score=19.05 Aligned_cols=22 Identities=27% Similarity=0.128 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|-.++
T Consensus 44 q~elA~~~gis~~~is~iE~G~ 65 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNS 65 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4578999999999999998664
No 245
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=30.32 E-value=15 Score=23.42 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 24 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sKe~ 64 (251)
T 3npi_A 24 LDIALSLFSELGFSD-AKLEAIAKKSGMSKRMIHYHFGDKRG 64 (251)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCCHHHHHHHcCCHHH
Confidence 455555576665422 33667899999999999999998765
No 246
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=30.11 E-value=22 Score=21.22 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 29 SNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 29 ~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
..-+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 14 ~~il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 57 (196)
T 3he0_A 14 DQILAAAEQLIAESGFQG-LSMQKLANEAGVAAGTIYRYFSDKEH 57 (196)
T ss_dssp HHHHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchHHHhcCCHHH
Confidence 334666667788888654 44677899999999999888887654
No 247
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=30.10 E-value=33 Score=19.42 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|-.+++
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999987654
No 248
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=30.05 E-value=34 Score=20.64 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-..|.|+-.
T Consensus 24 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 64 (212)
T 1pb6_A 24 LSAALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEA 64 (212)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHHH
T ss_pred HHHHHHHHHHcCcch-hhHHHHHHHHCCChhHHHHhCCCHHH
Confidence 444555577777644 44778899999999999999988654
No 249
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=29.93 E-value=34 Score=20.98 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q psy16797 49 KRHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 49 ~~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...+||..+|++...|..|..+.+
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~ 45 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGA 45 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSS
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCC
Confidence 467899999999999999997543
No 250
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=29.62 E-value=21 Score=21.35 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 13 l~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 53 (199)
T 3qbm_A 13 VAQAAALFNVSGYAG-TAISDIMAATGLEKGGIYRHFESKEQ 53 (199)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHhCcCc-CCHHHHHHHhCCCccHHHHhCCCHHH
Confidence 444555577777654 34677899999999999988887654
No 251
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=29.58 E-value=34 Score=19.28 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...||..+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999987643
No 252
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.50 E-value=37 Score=20.58 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFq 69 (99)
.-++|..+|++...++.|=.
T Consensus 19 I~evA~~~gvs~~tLR~Ye~ 38 (148)
T 3gpv_A 19 IGQVAKMQHLTISQIRYYDK 38 (148)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999964
No 253
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=29.23 E-value=27 Score=21.10 Aligned_cols=41 Identities=7% Similarity=0.027 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 14 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 54 (199)
T 2o7t_A 14 ITTTCNLYRTHHHDS-LTMENIAEQAGVGVATLYRNFPDRFT 54 (199)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHCCCcc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444555577777644 34677899999999999999988654
No 254
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.14 E-value=22 Score=21.86 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 14 l~aA~~lf~~~Gy~~-~s~~~IA~~AGvs~gt~Y~yF~sKe~ 54 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQ-SQVSKIAKQAGVADGTIYLYFKNKED 54 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 555566687777654 34677899999999999999988754
No 255
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=29.10 E-value=47 Score=17.36 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqN 70 (99)
...+|..||++...|..|...
T Consensus 16 ~t~aA~~L~vtQ~AVS~~ir~ 36 (66)
T 2ovg_A 16 QTKTAKDLGVYPSSINQAIHA 36 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHh
Confidence 356799999999999999753
No 256
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=29.02 E-value=18 Score=21.85 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 14 Il~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~ 55 (193)
T 2dg8_A 14 ILAATLDLIAEEGIAR-VSHRRIAQRAGVPLGSMTYHFTGIEQ 55 (193)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHhChhh-ccHHHHHHHhCCCchhhheeCCCHHH
Confidence 3555666677777643 44677899999999999999988754
No 257
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=28.64 E-value=36 Score=20.49 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (220)
T 3lhq_A 20 LDVALRLFSQQGVSA-TSLAEIANAAGVTRGAIYWHFKNKSD 60 (220)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCceeehhhcCCHHH
Confidence 445555677777654 44677899999999999999988654
No 258
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=28.61 E-value=37 Score=20.21 Aligned_cols=41 Identities=10% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++..
T Consensus 14 l~aA~~l~~~~G~~~-~t~~~IA~~Agvs~~tly~~F~sK~~ 54 (194)
T 3dpj_A 14 VAAADELFYRQGFAQ-TSFVDISAAVGISRGNFYYHFKTKDE 54 (194)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCChHHHHHHcCCHHH
Confidence 444455577777654 44677899999999999999988754
No 259
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=28.41 E-value=32 Score=20.32 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 16 l~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 56 (191)
T 3on4_A 16 LAVAEALIQKDGYNA-FSFKDIATAINIKTASIHYHFPSKED 56 (191)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCcchhhhcCCCHHH
Confidence 455555577766543 34677899999999999999988654
No 260
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=28.36 E-value=35 Score=20.69 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...+-.+|.|+-.
T Consensus 20 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~ 60 (204)
T 2ibd_A 20 LDIAATLFAERGLRA-TTVRDIADAAGILSGSLYHHFDSKES 60 (204)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHTTSCHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCchhHHHhcCCHHH
Confidence 444455588887664 44778899999999999999988754
No 261
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=28.25 E-value=42 Score=19.90 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|- ......||...|++...+-.+|.++-.
T Consensus 20 l~aA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~ 60 (191)
T 4aci_A 20 LEGARRCFAEHGYE-GATVRRLEEATGKSRGAIFHHFGDKEN 60 (191)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhCcc-cCCHHHHHHHHCCCchHHHHHCCCHHH
Confidence 44444556665542 233677899999999999999988654
No 262
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=27.93 E-value=11 Score=23.66 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-++.....|....|-. .....||...|++...+-..|.++-.
T Consensus 35 Il~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 35 LLSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCHHH
Confidence 3566667788888754 34677899999999999888877654
No 263
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=27.73 E-value=47 Score=19.99 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|...+|-.. ....||...|++...+-..|.++-.
T Consensus 18 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~~K~~ 58 (189)
T 3vp5_A 18 YDACLNEFQTHSFHEA-KIMHIVKALDIPRGSFYQYFEDLKD 58 (189)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHCCcccc-cHHHHHHHhCCChHHHHHHCCCHHH
Confidence 4455556788777553 5778899999999999999987643
No 264
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=27.71 E-value=28 Score=20.39 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-..|.++-.
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 50 (170)
T 3egq_A 10 IEAALRLYMKKPPHE-VSIEEIAREAKVSKSLIFYHFESKQK 50 (170)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCCcc-CcHHHHHHHhCCCchhHHHHcCCHHH
Confidence 344445577777643 44677899999999999999988654
No 265
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=27.57 E-value=22 Score=21.92 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-++.-...|....|-. .....||...|++...+-..|.|+-.
T Consensus 16 Il~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~ 57 (219)
T 2w53_A 16 ILDAAEACFHEHGVAR-TTLEMIGARAGYTRGAVYWHFKNKSE 57 (219)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchHHhhcCCCHHH
Confidence 4566667788888765 44778899999999999988887654
No 266
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=27.50 E-value=41 Score=20.58 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFq 69 (99)
.-++|..+|++...++.|=.
T Consensus 14 i~e~A~~~gvs~~TLR~ye~ 33 (154)
T 2zhg_A 14 PGEVAKRSGVAVSALHFYES 33 (154)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34688999999999999964
No 267
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=27.49 E-value=30 Score=19.58 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|-.++
T Consensus 37 q~elA~~~gis~~~is~~E~G~ 58 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKR 58 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4578999999999999998654
No 268
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=27.34 E-value=44 Score=20.18 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...+-..|.|+-.
T Consensus 13 l~aA~~lf~~~G~~~-ts~~~IA~~aGvs~gtlY~~F~sKe~ 53 (197)
T 2gen_A 13 LQAALACFSEHGVDA-TTIEMIRDRSGASIGSLYHHFGNKER 53 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCCCHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCChHHHHHHCCCHHH
Confidence 555566688888754 44677899999999999999988754
No 269
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=27.30 E-value=31 Score=19.45 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
...||..+|++...|..|-.+++
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999987643
No 270
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=27.25 E-value=44 Score=19.76 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 34 ALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 34 ~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.....|....|- ......||...|++...+-.+|.|+-.
T Consensus 15 aa~~l~~~~G~~-~~t~~~IA~~agvs~~tlY~~F~sK~~ 53 (186)
T 2jj7_A 15 AAKKKFGERGYE-GTSIQEIAKEAKVNVAMASYYFNGKEN 53 (186)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred HHHHHHHHcCCc-cCCHHHHHHHhCCChhhhhhhcCCHHH
Confidence 333445555432 234677899999999999999998765
No 271
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=27.20 E-value=31 Score=21.98 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=16.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|..++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~ 54 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGI 54 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4567888888888888887653
No 272
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=27.08 E-value=60 Score=19.35 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHhCCChH
Q psy16797 26 AYTSNQLLALEKEFNQ-------QNYILRAKRHQLAKELNLCER 62 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~-------~~~p~~~~~~~la~~l~l~~~ 62 (99)
.+|++|+..|...|.. +.+.+..+...+...+|+.+.
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCC
Confidence 4789999999988742 347777777777788886543
No 273
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=27.04 E-value=40 Score=20.81 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 14 Il~aA~~lf~~~Gy~~-ts~~~IA~~AGvskgtlY~~F~sKe~ 55 (215)
T 1ui5_A 14 IIGAAADLFDRRGYES-TTLSEIVAHAGVTKGALYFHFAAKED 55 (215)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchhhHhhCCCHHH
Confidence 3556666788888755 44777899999999999999988654
No 274
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=26.83 E-value=39 Score=18.94 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q psy16797 48 AKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 48 ~~~~~la~~l~l~~~~V~~WFqN 70 (99)
.....||..+|+++..+...|+.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 45677888888888887766653
No 275
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=26.63 E-value=1e+02 Score=18.70 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHhCCCh-----HHHHHHHHHHHh
Q psy16797 45 ILRAKRHQLAKELNLCE-----RQIKIWFQNRRM 73 (99)
Q Consensus 45 p~~~~~~~la~~l~l~~-----~~V~~WFqNrR~ 73 (99)
.+...|.+||.+||++. .+..+|.+-.-.
T Consensus 81 sSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk~vm 114 (130)
T 2gqb_A 81 SSLSARKELAKELGYSGDMNDSASMNIWLHKQVM 114 (130)
T ss_dssp CSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Confidence 67789999999999873 467789975443
No 276
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=26.57 E-value=1.1e+02 Score=18.54 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 25 TAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 25 ~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
..+|+.+..+|.-...- . ...+||..++++...|+....+=+.|..
T Consensus 153 ~~Lt~rE~~vl~~l~~g---~---s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIAQG---L---PNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcC---C---CHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 35899998888766543 2 2677899999999999998888776654
No 277
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=26.45 E-value=34 Score=20.71 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR 72 (99)
-++.....|....|-. .....||...|++...+-.+|.|+-
T Consensus 15 Il~aA~~lf~~~G~~~-~s~~~Ia~~Agvskgt~Y~yF~sKe 55 (197)
T 2f07_A 15 ILQAAIEVISEKGLDK-ASISDIVKKAGTAQGTFYLYFSSKN 55 (197)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSST
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchHHHHhCCCHH
Confidence 3555666688888765 3467789999999999999998754
No 278
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=26.14 E-value=28 Score=20.57 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 54 (194)
T 2g7s_A 14 LQCARTLIIRGGYNS-FSYADISQVVGIRNASIHHHFPSKSD 54 (194)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchHHHHHcCCHHH
Confidence 344445577777643 44677899999999999999988654
No 279
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=26.07 E-value=47 Score=21.63 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 47 l~AA~~lf~e~G~~~-~S~~~IA~~AGVs~~tlY~hF~sKe~ 87 (273)
T 3c07_A 47 LETAMRLFQERGYDR-TTMRAIAQEAGVSVGNAYYYFAGKEH 87 (273)
T ss_dssp HHHHHHHHHHTCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCCccc-cCHHHHHHHHCCCHHHHHHHcCCHHH
Confidence 445555688888754 44677899999999999999988754
No 280
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.04 E-value=13 Score=23.35 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-..|.|+-.
T Consensus 22 l~aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K~~ 62 (216)
T 2oi8_A 22 KDHAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGRDE 62 (216)
T ss_dssp HHHHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444455577777654 44677899999999999999987654
No 281
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=25.81 E-value=93 Score=18.43 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHH
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIK 65 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~ 65 (99)
+.-|+..++..|-..|. -+......||..|+++...|.
T Consensus 69 ~~G~p~~eI~~l~~~f~----w~~~~~~~l~~~l~~t~~~~~ 106 (116)
T 3rmq_A 69 ALGWPMREISDLAHRFD----WSPALITRLAEVLHCSFGEVV 106 (116)
T ss_dssp HTTCCHHHHHHHHTTSC----CCHHHHHHHHHHSCSCHHHHH
T ss_pred hcCCCHHHhhhhhhhhc----CCHHHHHHHHHHhcCcchhee
Confidence 44578888888876665 566888899999999998764
No 282
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=25.74 E-value=69 Score=17.66 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q psy16797 49 KRHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 49 ~~~~la~~l~l~~~~V~~WFq 69 (99)
....||..+|+++..+...|+
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk 43 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQ 43 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456678888888877766664
No 283
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=25.67 E-value=33 Score=21.45 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 19 l~AA~~l~~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 59 (231)
T 2qib_A 19 IGVALDLFSRRSPDE-VSIDEIASAAGISRPLVYHYFPGKLS 59 (231)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 445555688877643 44677899999999999999988754
No 284
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=25.66 E-value=27 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 15 l~aA~~lf~~~G~~~-~s~~~IA~~aGvsk~tlY~~F~sKe~ 55 (203)
T 3cdl_A 15 VQAAIAEFGDRGFEI-TSMDRIAARAEVSKRTVYNHFPSKEE 55 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHTTSSSHHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 444455588888765 34677899999999999999988765
No 285
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=25.54 E-value=29 Score=18.21 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
...||...|++...|..++.++
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5678999999999999998664
No 286
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=25.49 E-value=34 Score=20.98 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-.+|.|+-.
T Consensus 28 l~AA~~lf~e~G~~~-~s~~~IA~~AGVsk~tlY~~F~sKe~ 68 (207)
T 3bjb_A 28 LEAAIELATEKELAR-VQMHEVAKRAGVAIGTLYRYFPSKTH 68 (207)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 445555688887654 34677899999999999999998765
No 287
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=25.49 E-value=23 Score=21.42 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=23.5
Q ss_pred HHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 38 EFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 38 ~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.|....|-. .....||...|++...+-.+|.|+-.
T Consensus 37 lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 37 LESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 456656544 44778899999999999999987654
No 288
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=25.42 E-value=44 Score=14.40 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=11.2
Q ss_pred HhCCChHHHHHHHH
Q psy16797 56 ELNLCERQIKIWFQ 69 (99)
Q Consensus 56 ~l~l~~~~V~~WFq 69 (99)
.+-+++..|..||.
T Consensus 10 dlmlspddi~qw~s 23 (28)
T 2b3g_B 10 DLMLSPDDIEQWFT 23 (28)
T ss_dssp GGGCCHHHHHHHHH
T ss_pred hhhcChHHHHHHhh
Confidence 45588899999995
No 289
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=25.32 E-value=74 Score=20.34 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=33.1
Q ss_pred CCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 27 YTSNQ-LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 27 ~s~~q-~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.+.+. +..-...|....|-. .....||..+|++...+-..|.|+-.
T Consensus 6 ~tr~~Il~AA~~l~~~~G~~~-~S~r~IA~~aGvs~~tlY~hF~~K~~ 52 (234)
T 2opt_A 6 LTQDRIVVTALGILDAEGLDA-LSMRRLAQELKTGHASLYAHVGNRDE 52 (234)
T ss_dssp CCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred CCHHHHHHHHHHHHHhCCccc-cCHHHHHHHHCCChhHHHHHcCCHHH
Confidence 44443 455555677766533 44677899999999999999998765
No 290
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=25.30 E-value=40 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.4
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFq 69 (99)
...+|..+|+++.+|..|=.
T Consensus 26 q~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp HHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 35689999999999998743
No 291
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=25.24 E-value=52 Score=19.63 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..++|..+|++...|..|..++
T Consensus 84 q~elA~~lGis~s~is~~E~G~ 105 (141)
T 3kxa_A 84 QSELATAAGLPQPYLSRIENSK 105 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3468999999999999999764
No 292
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=25.01 E-value=28 Score=20.86 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 57 (203)
T 3b81_A 17 ANKIWDIFIANGYEN-TTLAFIINKLGISKGALYHYFSSKEE 57 (203)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCchhHHHHcCCHHH
Confidence 445555577777654 44677899999999999988887654
No 293
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=24.84 E-value=1e+02 Score=17.36 Aligned_cols=43 Identities=7% Similarity=0.215 Sum_probs=28.6
Q ss_pred CCCCCCHHHHH-HHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 23 ARTAYTSNQLL-ALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 23 ~r~~~s~~q~~-~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
.+.+++.+... ++..... .. ....++|...+++..+|..|-.-
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~-g~----~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIH-GL----ITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHT-TS----SCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHc-CC----CCHHHHHHHhCCCHHHHHHHHHH
Confidence 34458888744 4444433 22 23567899999999999999853
No 294
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=24.78 E-value=36 Score=20.43 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=27.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 35 LEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 35 L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 27 A~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~ 64 (212)
T 3loc_A 27 ALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEA 64 (212)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHTSCHHHHHHHSSSHHH
T ss_pred HHHHHHHhCccc-CCHHHHHHHHCcCHHHHhhhCCCHHH
Confidence 334466655432 33677899999999999999988643
No 295
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=24.59 E-value=31 Score=21.06 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 29 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 69 (214)
T 2zb9_A 29 LHAVGELLLTEGTAQ-LTFERVARVSGVSKTTLYKWWPSKGA 69 (214)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCHHHHHHHCCCHHH
Confidence 344445577777644 34677899999999999999988654
No 296
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=24.57 E-value=44 Score=21.33 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
++.....|....|-. .....||...|++...|-.+|.++-.-..
T Consensus 54 l~AA~~lf~e~G~~~-~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll~ 97 (260)
T 2of7_A 54 RAATYGLIRQQGYEA-TTVEQIAERAEVSPSTVLRYFPTREDIVL 97 (260)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHT
T ss_pred HHHHHHHHHHhCccc-ccHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 444555577777654 34677899999999999999998765443
No 297
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.43 E-value=28 Score=21.20 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...+-.+|.|+-.
T Consensus 18 l~aA~~lf~~~Gy~~-ts~~~IA~~agvs~gtlY~yF~sKe~ 58 (205)
T 1rkt_A 18 LEAAKTVFKRKGFEL-TTMKDVVEESGFSRGGVYLYFSSTEE 58 (205)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCCcchhhhhCCCHHH
Confidence 444455588888755 34677899999999999888877654
No 298
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=24.42 E-value=80 Score=16.09 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhC-CChHHHHHHHH
Q psy16797 26 AYTSNQLLALEKEFNQ-----QNYILRAKRHQLAKELN-LCERQIKIWFQ 69 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~-l~~~~V~~WFq 69 (99)
.+++.+...|...|.. +.+.+..+...+...+| ++...+...|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4677888888888742 45677777777666666 56667777764
No 299
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=24.36 E-value=18 Score=22.00 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.|+-.
T Consensus 20 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 20 IERAAAMFARQGYSE-TSIGDIARACECSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHTCTTT-SCHHHHHHHTTCCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcCeeeeeeCCHHH
Confidence 555666788888765 44778899999999988888876543
No 300
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=24.36 E-value=34 Score=22.57 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=35.2
Q ss_pred CCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 26 AYTSNQ-LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 26 ~~s~~q-~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
..+.+. +..-...|....|-. .....||..+|++...+-..|.|+-.
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~-~Smr~IA~~aGVs~~tlY~hF~~K~~ 73 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEA-ASMRRVAAELGAGTMSLYYYVPTKED 73 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHTTCCSHHH
T ss_pred cccHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 455554 555566688877655 34677899999999999999988765
No 301
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.26 E-value=34 Score=21.06 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 15 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~gtlY~yF~sKe~ 55 (209)
T 2gfn_A 15 ADAVLALIAREGISA-VTTRAVAEESGWSTGVLNHYFGSRHE 55 (209)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHSSCHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCcchHHhcCCCHHH
Confidence 444455588777654 44677899999999999999988654
No 302
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=24.22 E-value=29 Score=21.16 Aligned_cols=41 Identities=10% Similarity=0.245 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 20 l~aA~~lf~~~G~~~-~s~~~IA~~agvsk~tlY~yF~sKe~ 60 (199)
T 3crj_A 20 MQATYRALREHGYAD-LTIQRIADEYGKSTAAVHYYYDTKDD 60 (199)
T ss_dssp HHHHHHHHHHHTTTT-CCHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCChhHHhhhcCCHHH
Confidence 444555588888765 34677899999999999988887654
No 303
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=24.21 E-value=37 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 34 ALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 34 ~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
.....|....|- ......||...|++...+-.+|.|+-.
T Consensus 16 aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 54 (195)
T 3pas_A 16 ATVREVADHGFS-ATSVGKIAKAAGLSPATLYIYYEDKEQ 54 (195)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcChH-hcCHHHHHHHhCCCchHHHHHcCCHHH
Confidence 333445554432 234677899999999999999988654
No 304
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.19 E-value=33 Score=20.21 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHH-HHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQN-RRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqN-rR~ 73 (99)
+......|....|-. .....||...|++...+-..|.| +-.
T Consensus 12 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~~sK~~ 53 (191)
T 1sgm_A 12 LHTASRLSQLQGYHA-TGLNQIVKESGAPKGSLYHFFPNGKEE 53 (191)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCCCSCHHHHSTTTCHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCCchhHHHHccccHHH
Confidence 555556677777654 34677899999999999999987 543
No 305
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=24.07 E-value=14 Score=23.20 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-. .....||...|++...|-.+|.|+-.
T Consensus 41 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~ 81 (237)
T 3kkd_A 41 LDAAMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDIDD 81 (237)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHHH
T ss_pred HHHHHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 445555588877643 34677899999999999999988754
No 306
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=24.02 E-value=14 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|- ......||...|++...|-.+|.++-.
T Consensus 36 l~aA~~lf~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~sK~~ 76 (226)
T 2pz9_A 36 VAAAKEEFARHGIA-GARVDRIAKQARTSKERVYAYFRSKEA 76 (226)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCcc-cCcHHHHHHHHCCChHHHHHHcCCHHH
Confidence 45555567666643 234677899999999999999988654
No 307
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=23.95 E-value=67 Score=18.11 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=18.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNR 71 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNr 71 (99)
..+||..+|++...|..|=.++
T Consensus 52 Q~eLA~~~gvs~~~is~~E~G~ 73 (101)
T 4ghj_A 52 QSEVAEIAGIARKTVLNAEKGK 73 (101)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHCCC
Confidence 4678999999999999987654
No 308
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=23.95 E-value=7.2 Score=23.44 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-+..-...|....|-. .....||...|++...+-.+|.|+..
T Consensus 17 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 17 LLARAESTLEKDGVDG-LSLRQLAREAGVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHTC-----CCCSSSSHHH
T ss_pred HHHHHHHHHHhcChhh-hhHHHHHHHhCCChHHHHHHhCCHHH
Confidence 3555556677777643 34667899999999988888877543
No 309
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=23.79 E-value=36 Score=20.60 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-+......|....|-. .....||...|++...+-..|.++-.
T Consensus 15 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 56 (216)
T 3s5r_A 15 LLDAATTLFAEQGIAA-TTMAEIAASVGVNPAMIHYYFKTRDS 56 (216)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHTTTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHHCCCHHHHHHHcCCHHH
Confidence 3555666688877654 34677899999999999999988764
No 310
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=23.74 E-value=49 Score=18.76 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHH
Q psy16797 48 AKRHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 48 ~~~~~la~~l~l~~~~V~~WFq 69 (99)
.....||..+|++...+...|+
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 24 WTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 3466788888888888777774
No 311
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.37 E-value=1.2e+02 Score=17.87 Aligned_cols=47 Identities=6% Similarity=-0.094 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH-------hCCChHHHHHHHHH
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKE-------LNLCERQIKIWFQN 70 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~-------l~l~~~~V~~WFqN 70 (99)
...++.++...+......++..+..+....... ..++...|..|+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 345777777777777777776665554442222 24788999999964
No 312
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.92 E-value=1.3e+02 Score=18.60 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHH---HhhcCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy16797 27 YTSNQLLALEKE---FNQQNYILRAKRHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 27 ~s~~q~~~L~~~---f~~~~~p~~~~~~~la~~l~l~~~~V~~WFq 69 (99)
+|..|..+|+-. ...+.+|. ...+||..+|++...|..+..
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~--s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPP--SVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHTSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHcCCCcHHHHHHHH
Confidence 577777777665 34555542 256789999999887776664
No 313
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=22.85 E-value=93 Score=16.87 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.9
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFq 69 (99)
..+||..+|++...|...+.
T Consensus 30 ~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56789999999999887764
No 314
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.64 E-value=35 Score=20.37 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-.+|.++-.
T Consensus 23 l~aa~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (208)
T 3cwr_A 23 VGAAQRLLSSGGAAA-MTMEGVASEAGIAKKTLYRFASGRAD 63 (208)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCHHh-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344445577777543 34677899999999999999988654
No 315
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=22.59 E-value=72 Score=17.75 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=15.9
Q ss_pred HHHHHHhCCChHHHHHHHH
Q psy16797 51 HQLAKELNLCERQIKIWFQ 69 (99)
Q Consensus 51 ~~la~~l~l~~~~V~~WFq 69 (99)
..+|..+|+++.+|.-|=.
T Consensus 28 ~~vAe~~GvdeStISR~k~ 46 (83)
T 1zs4_A 28 EKTAEAVGVDKSQISRWKR 46 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHhhhhh
Confidence 4579999999999998744
No 316
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=22.51 E-value=54 Score=19.00 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy16797 50 RHQLAKELNLCERQIKIWFQNRR 72 (99)
Q Consensus 50 ~~~la~~l~l~~~~V~~WFqNrR 72 (99)
..+||..+|++...|..|..++.
T Consensus 56 Q~eLA~~lGis~~~Is~iE~G~~ 78 (120)
T 2o38_A 56 QAAAAARLGINQPKVSALRNYKL 78 (120)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987643
No 317
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.36 E-value=98 Score=16.41 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 37 KEFNQQNYILRAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 37 ~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
.....+.--......+||..+|++...|......
T Consensus 21 ~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 21 KFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444444112233567999999999998877643
No 318
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=22.25 E-value=61 Score=19.29 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 31 QLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 31 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-+......|....|- ......||...|++...|-..|.++-.
T Consensus 13 Il~AA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~ 54 (195)
T 3frq_A 13 VLEAATVVLKRCGPI-EFTLSGVAKEVGLSRAALIQRFTNRDT 54 (195)
T ss_dssp HHHHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHhhCcc-cCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 345555556665542 234677899999999999999988754
No 319
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.07 E-value=1.3e+02 Score=17.52 Aligned_cols=47 Identities=9% Similarity=-0.021 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH-HHh----C--CChHHHHHHHHH
Q psy16797 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLA-KEL----N--LCERQIKIWFQN 70 (99)
Q Consensus 24 r~~~s~~q~~~L~~~f~~~~~p~~~~~~~la-~~l----~--l~~~~V~~WFqN 70 (99)
...++.++...+......++..+..+..... ... | ++...|..|+..
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 4567888888888888777766655443322 211 5 788999999864
No 320
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.00 E-value=1.1e+02 Score=16.75 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=15.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q psy16797 49 KRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 49 ~~~~la~~l~l~~~~V~~WFqN 70 (99)
....||..+|+++..+..-|+.
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
Confidence 3566788888888877766654
No 321
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=21.92 E-value=26 Score=21.32 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.-...|....|-.. ....||...|++...+-.+|.|+-.
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sK~~ 57 (212)
T 2ras_A 17 VDVAQAIVEERGGAGL-TLSELAARAGISQANLSRYFETRED 57 (212)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHhCcccC-cHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3444555777777553 4677899999999999999988755
No 322
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=21.84 E-value=94 Score=17.86 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q psy16797 48 AKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 48 ~~~~~la~~l~l~~~~V~~WFqN 70 (99)
.....||..+|+++..+...|+.
T Consensus 94 ~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 94 VTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 44678999999999999998863
No 323
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=21.69 E-value=37 Score=20.61 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
++.....|....|-. .....||...|++...+-.+|.++-.
T Consensus 9 l~aA~~lf~~~G~~~-~s~~~IA~~Agvs~~t~Y~~F~sK~~ 49 (212)
T 3rh2_A 9 IQASLELFNEHGERT-ITTNHIAAHLDISPGNLYYHFRNKED 49 (212)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 444555577766543 34677899999999999999988754
No 324
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=21.57 E-value=1.3e+02 Score=17.67 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy16797 44 YILRAKRHQLAKELNLCERQIKIWFQN 70 (99)
Q Consensus 44 ~p~~~~~~~la~~l~l~~~~V~~WFqN 70 (99)
.++......|+..++++..+++.||..
T Consensus 7 ~l~~~~l~~l~~~~~~~~~~i~~~f~~ 33 (193)
T 1bjf_A 7 KLRPEVMQDLLESTDFTEHEIQEWYKG 33 (193)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344555556666667777777777753
No 325
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.53 E-value=62 Score=19.77 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 35 LEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 35 L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
-...|....|- ......||...|++...+-.+|.|+-.
T Consensus 12 A~~lf~~~G~~-~~s~~~IA~~AGvskgtlY~hF~sKe~ 49 (208)
T 2g3b_A 12 SATAIAQRGIR-GLRVNDVAEVAGVSPGLLYYHFKDRIG 49 (208)
T ss_dssp HHHHHHHHHHH-HCCHHHHHHHHTSCHHHHHHHHCSHHH
T ss_pred HHHHHHHhCcc-cCCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 33445554432 233677899999999999999988765
No 326
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=21.52 E-value=61 Score=20.22 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+..-...|....|-. .....||...|++...|-..|.++-.
T Consensus 13 l~AA~~lF~e~G~~~-ts~~~IA~~AGvs~~tlY~hF~sKe~ 53 (235)
T 2fbq_A 13 LDAAEQLFAEKGFAE-TSLRLITSKAGVNLAAVNYHFGSKKA 53 (235)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344455688888765 34677899999999999999987654
No 327
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=21.51 E-value=17 Score=21.58 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|....|-. .....||...|++...+-..|.|+-.
T Consensus 16 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 56 (196)
T 3col_A 16 QDAVAAIILAEGPAG-VSTTKVAKRVGIAQSNVYLYFKNKQA 56 (196)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHhCCHHH
Confidence 455556677776533 34677899999999999999988654
No 328
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=20.97 E-value=1.6e+02 Score=18.15 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhH
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMK 74 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k 74 (99)
.+|+.+..+|.-...- ....+||..++++...|+....+=+.|
T Consensus 159 ~Lt~rE~~vL~~l~~g------~s~~~Ia~~l~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 159 KLTKREQQIIKLLGSG------ASNIEIADKLFVSENTVKTHLHNVFKK 201 (225)
T ss_dssp TSCHHHHHHHHHHTTT------CCHHHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4888888888776431 235678999999999999877765544
No 329
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=20.89 E-value=28 Score=20.45 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy16797 32 LLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRM 73 (99)
Q Consensus 32 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~ 73 (99)
+......|...+|-. .....||...|++...+-..|.++-.
T Consensus 18 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 58 (177)
T 3kkc_A 18 YNAFISLLQENDYSK-ITVQDVIGLANVGRSTFYSHYESKEV 58 (177)
T ss_dssp HHHHHHHTTTSCTTT-CCHHHHHHHHCCCHHHHTTTCSSTHH
T ss_pred HHHHHHHHHhCChhH-hhHHHHHHHhCCcHhhHHHHcCCHHH
Confidence 445556677777654 44677899999999998888877644
No 330
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.54 E-value=1.4e+02 Score=21.77 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy16797 23 ARTAYTSNQLLALEKEFN-----QQNYILRAKRHQLAKELNL--CERQIKIWFQ 69 (99)
Q Consensus 23 ~r~~~s~~q~~~L~~~f~-----~~~~p~~~~~~~la~~l~l--~~~~V~~WFq 69 (99)
.+..++++|+..|...|. .+.+.+..+...+...+|+ +...|..-|.
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~ 345 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 345 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 467899999999999995 4567888888887777764 4556665553
No 331
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=20.41 E-value=1.4e+02 Score=18.37 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHH---HhhcCCC-CHHHHHHHHHHhCCC-hHHHHHHHH
Q psy16797 27 YTSNQLLALEKE---FNQQNYI-LRAKRHQLAKELNLC-ERQIKIWFQ 69 (99)
Q Consensus 27 ~s~~q~~~L~~~---f~~~~~p-~~~~~~~la~~l~l~-~~~V~~WFq 69 (99)
+|+.|...++.. .....++ + ..+||..+|++ ...|..|..
T Consensus 4 lt~~q~~i~~~i~~~~~~~g~~ps---~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 4 LTARQQEVFDLIRDHISQTGMPPT---RAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCC---HHHHHHHTTCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcc---HHHHHHHhCCCChHHHHHHHH
Confidence 566665555444 4445553 4 45789999999 899999985
No 332
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=20.22 E-value=1.5e+02 Score=17.76 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHHHHHHHHHhHHh
Q psy16797 26 AYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76 (99)
Q Consensus 26 ~~s~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WFqNrR~k~k 76 (99)
.+|+.+..+|.-... .+ ...++|..++++...|++...+-+.|..
T Consensus 142 ~Lt~rE~~vl~~l~~--g~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 142 SLTGREQQVLQLTIR--GL----MNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp TSCHHHHHHHHHHTT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHc--CC----cHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 367777777765532 11 2457899999999999998877666543
No 333
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=20.12 E-value=41 Score=19.35 Aligned_cols=12 Identities=33% Similarity=0.745 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHh
Q psy16797 62 RQIKIWFQNRRM 73 (99)
Q Consensus 62 ~~V~~WFqNrR~ 73 (99)
..|++|.||--.
T Consensus 52 gdvkvwmqnled 63 (127)
T 2jpf_A 52 GDVKVWMQNLED 63 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 469999998543
Done!