RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16797
(99 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 79.4 bits (197), Expect = 2e-21
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
+R RT +T QL LEKEF + Y +R +LAK+L L ERQ+K+WFQNRR K K+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 73.8 bits (182), Expect = 3e-19
Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76
K+R RT++T QL LEKEF + Y R +R +LAK+L L ERQ+K+WFQNRR K K
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 70.0 bits (172), Expect = 1e-17
Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79
+R RT +T QL LEKEF + Y R +R +LAKEL L ERQ+KIWFQNRR K K+ +
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 44.7 bits (106), Expect = 4e-07
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79
K R T QL+ LE+EF Y R +L+ LN+ + ++IWFQN+R K+KK +
Sbjct: 51 PKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 28.5 bits (64), Expect = 0.56
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 45 ILRAKRHQLAKELNLCERQIKIWFQNRRMK 74
+++ R + KE E +I+ W + ++K
Sbjct: 610 VIQGPRLECVKEAQAAEAKIQTWLEKNKVK 639
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 25.5 bits (57), Expect = 1.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 50 RHQLAKELNLCERQIKIWFQNRRM 73
+ +LA++ L +QI WF N R
Sbjct: 16 KSELARQTGLSRKQIDNWFINARR 39
>gnl|CDD|216978 pfam02331, P35, Apoptosis preventing protein. This viral protein
functions to block the host apoptotic response caused by
infection by the virus. The apoptosis preventing protein
(or early 35kD protein, P35) acts by blocking caspase
protease activity.
Length = 300
Score = 27.1 bits (60), Expect = 1.7
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 2 DRVQKYLDDSLIADEKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKE 56
D ++ +D+ E R S Q+ K F ++Y + + + K
Sbjct: 65 DMIKSKIDEQFDQLE-----RNYHNKRSTQMDGFHKYFKDEHYSVVCQNGSVLKS 114
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 26.6 bits (59), Expect = 2.7
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 16 EKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKEL 57
E+ + + NQL EK + + L QL EL
Sbjct: 91 EQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNEL 132
>gnl|CDD|182548 PRK10559, PRK10559, p-hydroxybenzoic acid efflux subunit AaeA;
Provisional.
Length = 310
Score = 26.2 bits (58), Expect = 3.4
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 3 RVQKYLDDS--------LIADEKKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLA 54
R QK L ++ ++A EK+ ++ R Q ++ E E +Q N +L+ HQLA
Sbjct: 82 RYQKALAEAEADVAYYQVLAQEKR-REAGRRNRLGVQAMSRE-EIDQANNVLQTVLHQLA 139
Query: 55 K 55
K
Sbjct: 140 K 140
>gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase;
Provisional.
Length = 356
Score = 25.6 bits (57), Expect = 5.5
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 24 RTAYTSNQL------LALE--KEFNQQNYILRAKRHQLAKEL 57
R Y N L ALE + Q LRA+R +LA L
Sbjct: 243 RPPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAAL 284
>gnl|CDD|183045 PRK11233, PRK11233, nitrogen assimilation transcriptional
regulator; Provisional.
Length = 305
Score = 25.0 bits (55), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 29 SNQLLALEKEFNQQNYILRAKR 50
S Q+ LE E NQQ ++R KR
Sbjct: 33 SQQVATLEGELNQQ-LLIRTKR 53
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 25.2 bits (55), Expect = 7.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 38 EFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKK 75
E + Q R++R+QL K+L CE ++ R+++K
Sbjct: 1063 ELHAQLSTNRSRRNQLEKQLTFCEAEMDNL--TRKLRK 1098
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.130 0.367
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,015,609
Number of extensions: 414538
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 43
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)