RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16797
(99 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 71.0 bits (174), Expect = 8e-19
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
R YT Q L LEKEF+ Y+ R +R ++A L+L ERQIKIWFQNRRMK KK
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 70.6 bits (173), Expect = 2e-18
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 18 KGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
+ ++ R YT +Q L LEKEF Y+ R +R+++A+ LNL ERQ+KIWFQNRRMK KK
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 69.5 bits (170), Expect = 3e-18
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 22 RARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMK 74
R RTA++S QL L++EFN+ Y+ +R QL+ EL L E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 69.4 bits (170), Expect = 4e-18
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
+R RT++T Q+ ALEKEF + +Y R +LA +++L E +I++WF NRR K ++
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 58
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 68.7 bits (168), Expect = 5e-18
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
K + ++++Q + LEK+F Q Y+ +R +LAK L L ERQ+K WFQNRR K ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 68.4 bits (167), Expect = 1e-17
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
++ R Y+ QL LE+E+ +I + KR +++ +L ERQI IWFQNRR+K+KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 66.1 bits (161), Expect = 7e-17
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 22 RARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
R RTA+T +QL LEKEF ++NY+ R +R +LA +LNL E IK+WFQNRRMK K+
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 66.2 bits (161), Expect = 1e-16
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
RT +T+ QL LEKEF+ Y+ RA+R ++A L L E Q+KIWFQNRRMK+KK
Sbjct: 27 PSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 84
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 64.9 bits (158), Expect = 2e-16
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
++ RT +T+ QLLALE++F Q+ Y+ A+R + + L+L E Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 64.5 bits (157), Expect = 2e-16
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRR 72
R +T Q L F + + + ++++L L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 64.2 bits (156), Expect = 4e-16
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGKT 80
+R RT +TS+Q+ LE+ F Q Y+ + L+ +L L Q+KIWF+NRR + K
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 81 PEDN 84
+
Sbjct: 62 QHKD 65
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 64.1 bits (156), Expect = 6e-16
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
R RT QL L + + QL + L R I++WFQN+R K KK
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 61.9 bits (150), Expect = 4e-15
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
++R+RT ++++QL LE+ F + Y R +LA+ NL E +I++WFQNRR + +K
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 59
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 62.0 bits (150), Expect = 5e-15
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79
K++ R +T Q LE+ F QQ Y+ +R LA + L Q+KIWFQN R K K+ +
Sbjct: 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68
Query: 80 TPED 83
+
Sbjct: 69 NEKG 72
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 60.7 bits (147), Expect = 1e-14
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
+++ R ++ Q+ LE+ F QQ Y+ +R LA ++L Q+KIWFQN R K K+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 59
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 59.9 bits (145), Expect = 2e-14
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 22 RARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79
+ RT + ALE+ F + + + ++A+ELNL + +++WF NRR ++K+ K
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 59.3 bits (144), Expect = 2e-14
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 28 TSNQLLALEKEFNQQN-YILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
T+ LEK F + + L+K+L+ R I+ WF+ RR ++K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 59.1 bits (143), Expect = 3e-14
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76
+++ + LE+ F ++ + ++ ++AK+ + Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 59.2 bits (143), Expect = 4e-14
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
+R RT +TS QL LE F + Y + R ++A NL E ++++WF+NRR K +K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 58.5 bits (141), Expect = 1e-13
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 21 KRARTAYTSNQLLALEKEFNQ-QNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
T +Q+ LE FN+ + +A E L E Q + WF+ R + ++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 58.1 bits (140), Expect = 1e-13
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 17 KKGKKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76
+ +KR RT+ + +LE F + + +A +L L + +++WF NRR K K
Sbjct: 5 VQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGK 64
Query: 77 K 77
+
Sbjct: 65 R 65
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 57.4 bits (138), Expect = 3e-13
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Query: 22 RARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELN---------------LCERQIKI 66
+R + L +E FN+ Y AKR ++A N + ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 67 WFQNRRMKKKK 77
WF NRR + K+
Sbjct: 62 WFANRRKEIKR 72
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 56.2 bits (135), Expect = 1e-12
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 15 DEKKGKKRARTAYTSNQLLALEKEFNQQ----NYILRAKRHQLAKELNLCERQIKIWFQN 70
KR RT +T+ Q + + Q E + + +KIW N
Sbjct: 12 SSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHN 71
Query: 71 RRMKKKK 77
+
Sbjct: 72 NKNSGPS 78
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 55.5 bits (134), Expect = 1e-12
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQ---NYILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76
K R + + Q Y ++ Q+A + NL Q+ WF N R +
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61
Query: 77 K 77
+
Sbjct: 62 Q 62
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 55.1 bits (132), Expect = 2e-12
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 18 KGKKRARTAYTSNQLLALEKEFNQQN-YILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76
R+RT + L L+ + Y + H L+ +L+L + I +FQN+R K
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Query: 77 K 77
Sbjct: 65 H 65
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 54.0 bits (130), Expect = 3e-12
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 22 RARTAYTSNQLLALEKEFNQQN-YILRAKRHQLAKELNLCERQIKIWFQNRRMKKK 76
+ LEK F Y + L+K+L+ R+I+ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 52.6 bits (126), Expect = 1e-11
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
RT+ +N +ALEK F + +A++LN+ + I++WF NRR K+K+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 52.9 bits (127), Expect = 1e-11
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 27 YTSNQLLALEKEFNQQN---YILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
+T + LE F + Y+ L K +L QIK W NRR K+K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 52.7 bits (126), Expect = 2e-11
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 21 KRARTAYTSNQLLALEKEFNQQN---YILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
+R R + L + F Y + +LAK+ + Q+ WF N+R++ KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 50.9 bits (121), Expect = 1e-10
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 20 KKRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKK 77
+ T+ QL L+ F + + + ++L + L R+I WF ++ K
Sbjct: 4 TPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 61
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 47.9 bits (113), Expect = 2e-09
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 21/75 (28%)
Query: 24 RTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELN---------------------LCER 62
R + L + + +Q + +R L +E N + E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 63 QIKIWFQNRRMKKKK 77
++ WF NRR ++
Sbjct: 61 RVYNWFANRRKEEAF 75
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 44.7 bits (105), Expect = 2e-08
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 21 KRARTAYTSNQLLALEKEFNQQNYILRAKRHQLAKELNLCERQIKIWFQNRRMKKKKGK 79
+ T QL L+ F Q + R +L + L +I WF + R K G+
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 24.4 bits (52), Expect = 2.9
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 60 CERQIKIWFQNRRMKKK 76
C + +F+ RR + K
Sbjct: 140 CAALLSDFFRMRRQEIK 156
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.367
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,565
Number of extensions: 14605
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 44
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)