Query psy168
Match_columns 130
No_of_seqs 114 out of 1664
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 22:24:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.9 1.4E-20 3E-25 136.2 12.3 110 1-110 118-234 (485)
2 KOG0254|consensus 99.8 1.7E-17 3.8E-22 122.0 12.3 107 1-107 144-255 (513)
3 TIGR00887 2A0109 phosphate:H+ 99.7 6.3E-17 1.4E-21 118.7 11.3 105 2-106 118-250 (502)
4 TIGR01299 synapt_SV2 synaptic 99.7 2.1E-16 4.5E-21 120.2 11.0 107 2-108 258-381 (742)
5 PF00083 Sugar_tr: Sugar (and 99.7 4.9E-20 1.1E-24 132.9 -8.7 107 1-107 104-217 (451)
6 KOG0255|consensus 99.7 1.3E-15 2.8E-20 112.2 12.2 106 2-107 174-280 (521)
7 PRK10077 xylE D-xylose transpo 99.7 2.7E-15 5.9E-20 109.0 13.2 106 2-107 123-240 (479)
8 TIGR00898 2A0119 cation transp 99.7 3.1E-15 6.6E-20 109.6 12.5 106 2-107 183-289 (505)
9 TIGR00879 SP MFS transporter, 99.5 7E-13 1.5E-17 95.4 13.4 106 2-107 130-242 (481)
10 KOG0253|consensus 99.5 3.7E-13 8E-18 94.6 10.3 105 2-108 169-277 (528)
11 PRK10642 proline/glycine betai 99.5 2.2E-13 4.7E-18 99.9 8.9 90 2-91 121-222 (490)
12 KOG2533|consensus 99.4 6.5E-13 1.4E-17 97.3 6.4 85 2-86 137-232 (495)
13 PRK09952 shikimate transporter 99.4 2.1E-12 4.6E-17 93.5 8.1 89 2-90 128-228 (438)
14 TIGR00903 2A0129 major facilit 99.3 6.9E-12 1.5E-16 89.2 9.0 85 2-87 82-171 (368)
15 PRK10642 proline/glycine betai 99.3 7.1E-12 1.5E-16 91.9 8.7 105 2-106 345-459 (490)
16 PRK10406 alpha-ketoglutarate t 99.3 2E-11 4.4E-16 88.2 9.4 86 2-87 127-224 (432)
17 TIGR00891 2A0112 putative sial 99.3 8.8E-11 1.9E-15 83.3 11.8 88 2-89 103-196 (405)
18 TIGR02332 HpaX 4-hydroxyphenyl 99.3 8.9E-12 1.9E-16 89.7 6.8 85 2-86 99-194 (412)
19 KOG2532|consensus 99.3 2.4E-11 5.3E-16 88.7 7.5 85 2-86 131-221 (466)
20 KOG0252|consensus 99.2 6.5E-12 1.4E-16 90.2 3.3 100 1-100 146-265 (538)
21 COG2814 AraJ Arabinose efflux 99.1 2.3E-10 5E-15 81.5 7.7 82 1-82 103-189 (394)
22 PRK11551 putative 3-hydroxyphe 99.1 7.8E-10 1.7E-14 79.0 10.0 88 2-89 106-198 (406)
23 TIGR00894 2A0114euk Na(+)-depe 99.1 1.6E-10 3.5E-15 84.1 6.2 85 2-86 134-224 (465)
24 PRK15075 citrate-proton sympor 99.1 6.6E-10 1.4E-14 80.4 9.0 86 2-87 120-217 (434)
25 TIGR00805 oat sodium-independe 99.1 9.9E-10 2.1E-14 83.1 10.1 83 2-84 175-283 (633)
26 PRK12307 putative sialic acid 99.1 5.1E-10 1.1E-14 80.4 8.1 87 2-88 109-199 (426)
27 TIGR00893 2A0114 d-galactonate 99.1 2E-10 4.2E-15 80.8 5.8 84 2-85 85-173 (399)
28 TIGR00883 2A0106 metabolite-pr 99.1 5.9E-10 1.3E-14 78.6 7.8 87 2-88 99-197 (394)
29 TIGR00895 2A0115 benzoate tran 99.1 6.2E-10 1.3E-14 78.6 7.8 90 2-91 108-202 (398)
30 PRK15403 multidrug efflux syst 99.1 1.6E-09 3.5E-14 78.1 10.0 85 2-86 107-196 (413)
31 PRK03545 putative arabinose tr 99.0 1.2E-09 2.6E-14 77.9 7.6 84 2-85 100-188 (390)
32 PRK11663 regulatory protein Uh 99.0 3.1E-09 6.8E-14 77.0 9.2 86 2-87 114-204 (434)
33 PRK10213 nepI ribonucleoside t 99.0 2.6E-09 5.6E-14 76.6 8.5 84 2-85 111-199 (394)
34 PF07690 MFS_1: Major Facilita 99.0 1.4E-09 3E-14 75.8 6.4 84 2-85 88-176 (352)
35 KOG1330|consensus 99.0 4.5E-11 9.8E-16 85.9 -1.1 83 2-84 124-212 (493)
36 TIGR00710 efflux_Bcr_CflA drug 98.9 9.3E-09 2E-13 72.7 9.5 85 2-86 96-185 (385)
37 PRK03893 putative sialic acid 98.9 8E-09 1.7E-13 75.6 9.4 87 2-88 111-201 (496)
38 PRK14995 methyl viologen resis 98.9 5.2E-09 1.1E-13 77.1 8.2 84 2-85 97-186 (495)
39 TIGR00711 efflux_EmrB drug res 98.9 2.6E-09 5.6E-14 77.9 5.7 84 2-85 93-181 (485)
40 PRK10091 MFS transport protein 98.9 7.8E-09 1.7E-13 73.6 7.7 84 2-85 94-182 (382)
41 TIGR00712 glpT glycerol-3-phos 98.9 1.7E-08 3.8E-13 73.1 9.3 86 2-87 121-212 (438)
42 TIGR00880 2_A_01_02 Multidrug 98.9 2.4E-08 5.1E-13 60.6 7.9 82 2-83 54-140 (141)
43 TIGR00900 2A0121 H+ Antiporter 98.9 2.4E-08 5.2E-13 69.8 8.9 75 2-76 95-173 (365)
44 PRK15402 multidrug efflux syst 98.9 3.4E-08 7.4E-13 70.8 9.8 85 2-86 104-193 (406)
45 PTZ00207 hypothetical protein; 98.8 3.7E-08 7.9E-13 74.0 9.1 102 2-104 123-230 (591)
46 PRK10473 multidrug efflux syst 98.8 5.6E-08 1.2E-12 69.3 9.2 84 2-85 94-182 (392)
47 PRK11102 bicyclomycin/multidru 98.8 3.7E-08 8.1E-13 69.7 8.2 84 2-85 82-170 (377)
48 PRK11273 glpT sn-glycerol-3-ph 98.8 5.7E-08 1.2E-12 70.8 9.0 86 2-87 123-214 (452)
49 PRK12382 putative transporter; 98.8 4.6E-08 1E-12 69.7 8.3 83 2-84 115-201 (392)
50 PRK11010 ampG muropeptide tran 98.8 9.6E-08 2.1E-12 70.5 9.9 85 2-86 110-199 (491)
51 PRK09556 uhpT sugar phosphate 98.8 9.9E-09 2.1E-13 75.0 4.5 85 2-86 125-217 (467)
52 TIGR00881 2A0104 phosphoglycer 98.8 8.7E-09 1.9E-13 72.3 3.8 85 2-86 86-176 (379)
53 PRK11195 lysophospholipid tran 98.7 6.9E-08 1.5E-12 69.2 8.2 84 3-86 92-178 (393)
54 TIGR00806 rfc RFC reduced fola 98.7 9E-08 1.9E-12 70.1 8.5 83 2-85 118-206 (511)
55 PRK05122 major facilitator sup 98.7 5.1E-08 1.1E-12 69.6 7.1 83 2-84 115-201 (399)
56 PRK11646 multidrug resistance 98.7 1.9E-07 4.2E-12 67.1 9.9 82 2-83 102-187 (400)
57 PRK10504 putative transporter; 98.7 9.6E-08 2.1E-12 69.7 7.9 83 2-84 101-188 (471)
58 PRK06814 acylglycerophosphoeth 98.7 9.7E-08 2.1E-12 76.5 7.9 84 2-85 111-198 (1140)
59 PRK11043 putative transporter; 98.7 2.3E-07 4.9E-12 66.4 8.7 84 2-85 97-184 (401)
60 PRK11652 emrD multidrug resist 98.7 2.4E-07 5.3E-12 66.1 8.8 85 2-86 99-188 (394)
61 PRK10489 enterobactin exporter 98.6 1.8E-07 4E-12 67.3 8.2 84 2-85 113-200 (417)
62 TIGR01299 synapt_SV2 synaptic 98.6 1.8E-07 3.8E-12 72.1 8.2 84 2-85 651-737 (742)
63 TIGR00899 2A0120 sugar efflux 98.6 1.7E-07 3.7E-12 66.0 7.5 86 2-87 90-182 (375)
64 cd06174 MFS The Major Facilita 98.6 2.4E-07 5.1E-12 64.3 7.9 75 2-76 90-168 (352)
65 TIGR00890 2A0111 Oxalate/Forma 98.6 1.9E-07 4.1E-12 65.5 7.5 82 2-84 94-180 (377)
66 PLN00028 nitrate transmembrane 98.6 2.9E-07 6.4E-12 67.6 8.4 79 2-81 127-218 (476)
67 PRK11902 ampG muropeptide tran 98.6 6.9E-07 1.5E-11 64.1 9.8 84 3-86 98-186 (402)
68 PRK03699 putative transporter; 98.6 5.9E-07 1.3E-11 64.3 9.1 75 2-76 98-177 (394)
69 COG2271 UhpC Sugar phosphate p 98.5 1.1E-07 2.4E-12 68.2 4.3 85 2-86 120-211 (448)
70 PRK09705 cynX putative cyanate 98.5 7.2E-07 1.6E-11 64.0 8.5 72 2-74 100-176 (393)
71 PRK09874 drug efflux system pr 98.5 1.3E-06 2.8E-11 62.4 9.4 83 2-85 110-197 (408)
72 TIGR00901 2A0125 AmpG-related 98.5 7.3E-07 1.6E-11 62.8 8.0 82 3-84 87-181 (356)
73 TIGR00886 2A0108 nitrite extru 98.5 5.5E-07 1.2E-11 63.4 7.1 83 2-85 94-192 (366)
74 PRK10207 dipeptide/tripeptide 98.5 8.1E-07 1.8E-11 65.7 8.2 67 3-69 109-181 (489)
75 PF06609 TRI12: Fungal trichot 98.5 7.9E-07 1.7E-11 66.9 7.5 74 2-76 134-211 (599)
76 PRK08633 2-acyl-glycerophospho 98.4 9.8E-07 2.1E-11 70.6 8.1 86 2-87 106-205 (1146)
77 KOG2615|consensus 98.4 5E-07 1.1E-11 64.3 5.4 83 3-86 125-218 (451)
78 TIGR00885 fucP L-fucose:H+ sym 98.4 1.8E-06 3.8E-11 62.5 8.4 75 2-76 97-201 (410)
79 TIGR00889 2A0110 nucleoside tr 98.4 1E-06 2.2E-11 63.8 7.0 82 3-84 312-405 (418)
80 TIGR00892 2A0113 monocarboxyla 98.4 5.9E-07 1.3E-11 65.7 4.8 74 2-75 336-414 (455)
81 TIGR00892 2A0113 monocarboxyla 98.4 1.6E-06 3.5E-11 63.4 7.1 72 4-76 113-188 (455)
82 PRK10133 L-fucose transporter; 98.3 4.3E-06 9.3E-11 61.0 8.3 54 2-55 120-173 (438)
83 KOG3764|consensus 98.3 6E-07 1.3E-11 64.2 3.6 78 1-78 161-243 (464)
84 PRK10054 putative transporter; 98.3 3.4E-06 7.5E-11 60.6 7.3 83 2-84 99-185 (395)
85 TIGR00924 yjdL_sub1_fam amino 98.3 4.6E-06 1E-10 61.4 7.9 75 2-76 105-186 (475)
86 TIGR00897 2A0118 polyol permea 98.2 1.2E-05 2.5E-10 57.9 9.1 65 2-66 108-177 (402)
87 PRK05122 major facilitator sup 98.2 8.3E-06 1.8E-10 58.3 8.1 80 3-82 306-389 (399)
88 PRK15011 sugar efflux transpor 98.2 9.8E-06 2.1E-10 58.1 8.2 82 4-85 110-198 (393)
89 PRK11128 putative 3-phenylprop 98.2 5.1E-06 1.1E-10 59.3 6.5 81 2-84 97-181 (382)
90 PRK15034 nitrate/nitrite trans 98.2 1.9E-05 4E-10 58.1 9.3 81 2-83 131-234 (462)
91 PRK09584 tppB putative tripept 98.2 1.2E-05 2.5E-10 59.7 8.3 72 2-73 115-192 (500)
92 KOG3626|consensus 98.2 1.5E-05 3.3E-10 61.0 9.0 84 2-85 240-346 (735)
93 TIGR01272 gluP glucose/galacto 98.2 1.6E-05 3.4E-10 55.6 8.3 82 2-83 13-116 (310)
94 PRK15011 sugar efflux transpor 98.2 1.9E-05 4.2E-10 56.6 8.5 80 3-83 309-392 (393)
95 TIGR00896 CynX cyanate transpo 98.1 2.4E-05 5.1E-10 55.2 8.6 70 2-72 90-165 (355)
96 PF03137 OATP: Organic Anion T 98.1 4.2E-07 9.2E-12 67.8 -0.5 84 1-84 143-252 (539)
97 cd06174 MFS The Major Facilita 98.1 1.7E-05 3.8E-10 54.9 7.6 77 2-78 268-348 (352)
98 PRK10077 xylE D-xylose transpo 98.1 6.4E-05 1.4E-09 55.0 9.9 68 18-85 383-461 (479)
99 PRK12382 putative transporter; 98.0 4E-05 8.6E-10 54.7 8.2 74 3-76 306-383 (392)
100 COG2223 NarK Nitrate/nitrite t 98.0 3.3E-05 7.1E-10 55.6 7.5 85 2-87 108-199 (417)
101 TIGR00898 2A0119 cation transp 98.0 3E-05 6.5E-10 57.2 7.2 81 5-85 416-498 (505)
102 TIGR00902 2A0127 phenyl propri 98.0 2.5E-05 5.5E-10 55.8 6.1 67 2-70 97-167 (382)
103 TIGR00890 2A0111 Oxalate/Forma 98.0 3.3E-05 7.1E-10 54.2 6.6 70 4-73 300-373 (377)
104 PRK03633 putative MFS family t 98.0 6.1E-05 1.3E-09 53.7 7.9 57 2-58 97-153 (381)
105 TIGR00899 2A0120 sugar efflux 97.9 8E-05 1.7E-09 52.5 7.9 79 3-82 292-374 (375)
106 PRK09874 drug efflux system pr 97.9 3.3E-05 7.2E-10 55.2 5.9 75 2-76 314-392 (408)
107 TIGR00879 SP MFS transporter, 97.9 4.6E-05 1E-09 55.0 6.2 70 16-85 400-474 (481)
108 PRK09528 lacY galactoside perm 97.8 4.6E-05 9.9E-10 55.0 5.6 75 2-76 318-397 (420)
109 TIGR00792 gph sugar (Glycoside 97.8 0.0002 4.3E-09 51.7 8.3 83 3-85 103-198 (437)
110 TIGR00924 yjdL_sub1_fam amino 97.8 0.00012 2.7E-09 54.0 7.2 75 2-76 384-462 (475)
111 PRK10489 enterobactin exporter 97.7 0.00016 3.6E-09 52.1 7.1 82 3-84 316-402 (417)
112 PRK11551 putative 3-hydroxyphe 97.7 0.00021 4.5E-09 51.2 7.5 73 4-76 313-390 (406)
113 PRK09952 shikimate transporter 97.7 0.00029 6.4E-09 51.3 8.3 80 5-84 349-435 (438)
114 PRK11273 glpT sn-glycerol-3-ph 97.7 0.00037 7.9E-09 51.0 8.7 71 6-76 354-429 (452)
115 PRK09584 tppB putative tripept 97.7 0.00021 4.5E-09 53.2 7.4 55 2-56 385-439 (500)
116 KOG2325|consensus 97.7 0.00012 2.5E-09 54.1 5.7 84 2-86 133-234 (488)
117 TIGR00893 2A0114 d-galactonate 97.7 0.00038 8.2E-09 48.9 7.9 64 13-76 325-393 (399)
118 PRK03633 putative MFS family t 97.6 0.00041 8.9E-09 49.5 8.1 73 4-76 290-366 (381)
119 PRK15462 dipeptide/tripeptide 97.6 0.00042 9E-09 51.6 7.9 65 8-72 109-179 (493)
120 TIGR00882 2A0105 oligosacchari 97.5 0.00082 1.8E-08 48.2 7.7 80 4-85 104-187 (396)
121 TIGR00887 2A0109 phosphate:H+ 97.5 0.0012 2.6E-08 49.0 8.6 70 16-85 409-492 (502)
122 TIGR02718 sider_RhtX_FptX side 97.5 0.0019 4.2E-08 46.2 9.4 71 12-82 110-184 (390)
123 PRK11663 regulatory protein Uh 97.4 0.00062 1.3E-08 49.5 6.9 58 19-76 357-418 (434)
124 PF03825 Nuc_H_symport: Nucleo 97.4 0.0016 3.5E-08 47.3 8.1 71 6-76 308-389 (400)
125 PRK09556 uhpT sugar phosphate 97.3 0.0011 2.4E-08 48.7 7.2 74 3-76 353-443 (467)
126 PRK09705 cynX putative cyanate 97.3 0.0017 3.8E-08 46.6 7.7 79 7-85 300-385 (393)
127 PRK03545 putative arabinose tr 97.2 0.0047 1E-07 44.2 9.1 73 3-76 298-374 (390)
128 TIGR00883 2A0106 metabolite-pr 97.2 0.00054 1.2E-08 48.3 4.1 68 3-70 316-389 (394)
129 PRK08633 2-acyl-glycerophospho 97.2 0.0024 5.2E-08 51.7 7.8 82 3-84 326-413 (1146)
130 KOG0569|consensus 97.1 0.011 2.4E-07 44.0 10.3 75 9-84 379-457 (485)
131 TIGR00897 2A0118 polyol permea 97.1 0.0054 1.2E-07 44.2 8.4 71 4-76 321-395 (402)
132 TIGR01301 GPH_sucrose GPH fami 97.1 0.0034 7.4E-08 46.6 7.5 74 12-85 127-222 (477)
133 KOG2504|consensus 97.1 0.0007 1.5E-08 50.6 3.8 79 5-84 141-224 (509)
134 PRK03893 putative sialic acid 97.1 0.0024 5.1E-08 47.0 6.6 64 6-69 373-440 (496)
135 TIGR00712 glpT glycerol-3-phos 97.1 0.0011 2.4E-08 48.2 4.9 63 22-84 368-436 (438)
136 TIGR00788 fbt folate/biopterin 97.1 0.0014 3E-08 48.4 5.2 80 4-84 125-211 (468)
137 PRK11646 multidrug resistance 97.0 0.0023 5.1E-08 46.1 6.1 55 4-58 302-356 (400)
138 PF11700 ATG22: Vacuole efflux 97.0 0.0047 1E-07 45.9 7.7 82 2-83 383-469 (477)
139 TIGR00891 2A0112 putative sial 97.0 0.0022 4.8E-08 45.5 5.7 55 4-58 333-387 (405)
140 TIGR00902 2A0127 phenyl propri 97.0 0.006 1.3E-07 43.6 7.8 70 2-73 296-370 (382)
141 TIGR00903 2A0129 major facilit 97.0 0.0043 9.3E-08 44.5 7.0 71 7-77 288-360 (368)
142 PRK06814 acylglycerophosphoeth 97.0 0.0037 8E-08 50.8 7.3 68 3-70 338-410 (1140)
143 TIGR00881 2A0104 phosphoglycer 97.0 0.0011 2.3E-08 46.5 3.8 55 4-58 315-369 (379)
144 COG0738 FucP Fucose permease [ 96.9 0.0067 1.5E-07 44.0 7.4 57 2-58 107-163 (422)
145 PF03209 PUCC: PUCC protein; 96.9 0.014 3.1E-07 42.3 9.0 55 4-58 94-148 (403)
146 PF05977 MFS_3: Transmembrane 96.8 0.0096 2.1E-07 44.8 7.9 75 2-76 106-184 (524)
147 PRK10504 putative transporter; 96.8 0.0067 1.5E-07 44.5 7.0 54 5-58 359-412 (471)
148 TIGR00788 fbt folate/biopterin 96.8 0.009 1.9E-07 44.2 7.5 53 6-58 358-410 (468)
149 TIGR00895 2A0115 benzoate tran 96.8 0.0026 5.7E-08 44.9 4.5 55 3-57 342-396 (398)
150 TIGR00900 2A0121 H+ Antiporter 96.8 0.0031 6.8E-08 44.0 4.8 56 2-57 304-359 (365)
151 PRK11010 ampG muropeptide tran 96.8 0.01 2.2E-07 44.1 7.7 72 13-84 330-405 (491)
152 TIGR00792 gph sugar (Glycoside 96.7 0.022 4.8E-07 41.2 9.0 56 3-58 315-377 (437)
153 COG0477 ProP Permeases of the 96.7 0.014 3E-07 39.0 7.5 72 2-73 97-176 (338)
154 PF00854 PTR2: POT family; In 96.7 0.019 4.2E-07 41.0 8.4 79 2-80 36-121 (372)
155 COG2807 CynX Cyanate permease 96.7 0.018 3.8E-07 41.4 7.8 78 2-80 102-184 (395)
156 PRK03699 putative transporter; 96.6 0.0093 2E-07 42.8 6.6 79 4-83 299-381 (394)
157 PRK10054 putative transporter; 96.6 0.013 2.8E-07 42.2 7.4 81 3-84 302-387 (395)
158 PF05977 MFS_3: Transmembrane 96.6 0.016 3.6E-07 43.6 7.9 71 3-73 311-385 (524)
159 PRK12307 putative sialic acid 96.6 0.014 3E-07 42.1 7.3 42 17-58 339-380 (426)
160 TIGR02718 sider_RhtX_FptX side 96.6 0.021 4.6E-07 40.8 8.1 66 9-74 313-383 (390)
161 PRK11902 ampG muropeptide tran 96.5 0.011 2.3E-07 42.6 6.4 72 7-78 315-386 (402)
162 PRK09528 lacY galactoside perm 96.5 0.0079 1.7E-07 43.5 5.7 54 31-84 137-194 (420)
163 PF13347 MFS_2: MFS/sugar tran 96.4 0.015 3.3E-07 42.2 6.7 81 3-83 107-200 (428)
164 KOG0252|consensus 96.3 0.0063 1.4E-07 45.0 4.0 70 16-85 423-501 (538)
165 PRK10207 dipeptide/tripeptide 96.3 0.025 5.3E-07 42.2 7.2 54 3-56 383-436 (489)
166 KOG2816|consensus 96.2 0.018 4E-07 42.7 6.2 73 13-85 126-203 (463)
167 PRK09669 putative symporter Ya 96.2 0.05 1.1E-06 39.8 8.3 79 5-83 115-206 (444)
168 KOG0253|consensus 96.2 0.0076 1.7E-07 43.7 3.9 76 7-82 442-519 (528)
169 TIGR00882 2A0105 oligosacchari 96.1 0.017 3.7E-07 41.4 5.5 74 3-76 311-389 (396)
170 TIGR01301 GPH_sucrose GPH fami 96.1 0.031 6.7E-07 41.7 6.7 82 4-85 385-475 (477)
171 PRK09848 glucuronide transport 96.1 0.087 1.9E-06 38.5 9.1 54 3-56 323-383 (448)
172 PRK10406 alpha-ketoglutarate t 96.0 0.044 9.4E-07 39.9 7.2 64 17-80 354-422 (432)
173 PRK10213 nepI ribonucleoside t 96.0 0.084 1.8E-06 38.1 8.5 70 3-73 309-382 (394)
174 PF07690 MFS_1: Major Facilita 96.0 0.014 2.9E-07 40.6 4.3 50 3-52 303-352 (352)
175 PF00083 Sugar_tr: Sugar (and 95.8 0.0017 3.7E-08 47.2 -0.7 69 16-84 366-439 (451)
176 KOG2504|consensus 95.7 0.0085 1.8E-07 44.9 2.7 80 3-82 392-476 (509)
177 PRK11128 putative 3-phenylprop 95.7 0.084 1.8E-06 37.7 7.6 70 2-73 296-370 (382)
178 PRK11462 putative transporter; 95.5 0.2 4.3E-06 37.1 9.0 80 5-84 115-207 (460)
179 KOG3762|consensus 95.5 0.05 1.1E-06 41.2 5.7 74 5-78 465-543 (618)
180 PLN00028 nitrate transmembrane 95.5 0.034 7.4E-07 41.2 5.0 74 8-82 357-433 (476)
181 TIGR02332 HpaX 4-hydroxyphenyl 95.5 0.03 6.6E-07 40.6 4.6 52 18-69 352-408 (412)
182 PRK15075 citrate-proton sympor 95.4 0.088 1.9E-06 38.4 6.9 52 6-57 338-390 (434)
183 PRK15402 multidrug efflux syst 95.4 0.17 3.7E-06 36.4 8.4 54 4-58 314-367 (406)
184 PRK11195 lysophospholipid tran 95.4 0.17 3.8E-06 36.4 8.2 67 4-70 298-370 (393)
185 TIGR00894 2A0114euk Na(+)-depe 95.3 0.065 1.4E-06 39.3 6.0 71 9-80 371-448 (465)
186 KOG0255|consensus 95.3 0.11 2.4E-06 38.7 7.2 82 5-86 412-497 (521)
187 PRK11652 emrD multidrug resist 95.2 0.14 3E-06 36.7 7.3 55 3-58 303-357 (394)
188 PRK09669 putative symporter Ya 95.1 0.23 5E-06 36.3 8.2 55 3-57 323-384 (444)
189 PRK10429 melibiose:sodium symp 95.0 0.23 5E-06 36.8 8.1 53 4-56 329-388 (473)
190 COG2271 UhpC Sugar phosphate p 95.0 0.033 7.2E-07 40.8 3.5 74 3-76 350-428 (448)
191 COG3104 PTR2 Dipeptide/tripept 94.9 0.038 8.3E-07 41.2 3.8 80 2-81 120-205 (498)
192 PF01306 LacY_symp: LacY proto 94.9 0.22 4.8E-06 36.6 7.5 81 2-82 315-401 (412)
193 PRK15462 dipeptide/tripeptide 94.9 0.2 4.4E-06 37.6 7.5 55 2-56 380-435 (493)
194 PF05978 UNC-93: Ion channel r 94.7 0.11 2.4E-06 32.9 5.0 53 2-54 92-144 (156)
195 PRK10429 melibiose:sodium symp 94.6 0.45 9.9E-06 35.2 8.7 80 5-84 112-204 (473)
196 TIGR00711 efflux_EmrB drug res 94.5 0.089 1.9E-06 38.6 4.8 55 4-58 353-407 (485)
197 KOG2532|consensus 94.5 0.13 2.8E-06 38.3 5.6 60 29-88 387-455 (466)
198 KOG0254|consensus 94.4 0.45 9.8E-06 35.7 8.5 71 14-84 410-486 (513)
199 TIGR00710 efflux_Bcr_CflA drug 94.3 0.57 1.2E-05 33.1 8.5 50 5-55 306-356 (385)
200 PRK14995 methyl viologen resis 94.2 0.11 2.4E-06 38.7 4.7 56 3-58 355-410 (495)
201 COG2814 AraJ Arabinose efflux 94.2 0.64 1.4E-05 34.0 8.4 73 4-77 305-381 (394)
202 PF06813 Nodulin-like: Nodulin 94.1 0.43 9.2E-06 32.7 7.1 76 5-81 102-181 (250)
203 PF03092 BT1: BT1 family; Int 93.9 0.37 8.1E-06 35.5 7.0 77 8-84 327-415 (433)
204 KOG4686|consensus 93.7 0.19 4.1E-06 35.6 4.9 55 4-58 357-411 (459)
205 PF02487 CLN3: CLN3 protein; 93.6 0.14 3.1E-06 37.4 4.4 56 3-58 339-394 (402)
206 TIGR00901 2A0125 AmpG-related 93.6 0.095 2.1E-06 36.9 3.4 42 3-44 313-354 (356)
207 COG2270 Permeases of the major 93.5 0.22 4.8E-06 36.6 5.2 81 3-83 345-430 (438)
208 COG2211 MelB Na+/melibiose sym 93.3 1.1 2.4E-05 33.6 8.5 82 4-85 117-211 (467)
209 PTZ00207 hypothetical protein; 93.1 0.97 2.1E-05 34.9 8.2 86 2-88 455-559 (591)
210 KOG2563|consensus 93.0 0.57 1.2E-05 34.9 6.5 54 4-57 145-198 (480)
211 PF06609 TRI12: Fungal trichot 92.7 0.82 1.8E-05 35.3 7.3 85 4-88 410-560 (599)
212 PF03209 PUCC: PUCC protein; 91.7 2.6 5.6E-05 31.0 8.6 74 2-75 304-391 (403)
213 PRK10091 MFS transport protein 91.7 2 4.4E-05 30.7 8.2 70 5-76 295-370 (382)
214 TIGR00926 2A1704 Peptide:H+ sy 91.7 2.5 5.4E-05 33.1 9.0 75 3-77 89-177 (654)
215 PF11700 ATG22: Vacuole efflux 91.7 2.3 5E-05 31.9 8.6 79 8-86 135-252 (477)
216 TIGR00889 2A0110 nucleoside tr 91.6 0.85 1.8E-05 33.3 6.2 77 2-85 95-183 (418)
217 COG2807 CynX Cyanate permease 91.4 1 2.2E-05 32.7 6.2 71 6-76 303-379 (395)
218 PF01770 Folate_carrier: Reduc 90.8 1.8 3.8E-05 32.0 7.1 81 4-85 99-185 (412)
219 PRK11462 putative transporter; 90.4 1.9 4E-05 32.0 7.1 23 7-29 326-348 (460)
220 PRK11043 putative transporter; 89.7 5 0.00011 28.7 8.7 53 5-58 302-354 (401)
221 PF03092 BT1: BT1 family; Int 89.7 1.3 2.9E-05 32.6 5.8 79 5-83 92-177 (433)
222 KOG3764|consensus 89.6 1 2.2E-05 33.3 5.0 45 32-76 400-448 (464)
223 PRK11102 bicyclomycin/multidru 89.6 4.7 0.0001 28.5 8.4 42 14-56 302-344 (377)
224 PRK15403 multidrug efflux syst 89.2 6.8 0.00015 28.5 9.1 55 3-58 316-370 (413)
225 TIGR01272 gluP glucose/galacto 88.5 2.5 5.4E-05 29.6 6.3 59 5-65 236-298 (310)
226 PRK09848 glucuronide transport 87.4 9.5 0.0002 28.0 9.0 51 6-56 116-172 (448)
227 KOG2615|consensus 87.3 1.2 2.6E-05 32.7 4.1 56 3-58 356-411 (451)
228 COG3104 PTR2 Dipeptide/tripept 86.8 2.7 6E-05 31.7 5.8 75 2-76 397-481 (498)
229 TIGR00896 CynX cyanate transpo 86.1 1.6 3.5E-05 30.7 4.3 52 6-57 292-344 (355)
230 PF13347 MFS_2: MFS/sugar tran 84.1 9 0.00019 27.9 7.5 55 2-56 318-379 (428)
231 TIGR00926 2A1704 Peptide:H+ sy 83.7 8.2 0.00018 30.3 7.4 54 5-58 571-624 (654)
232 PF06645 SPC12: Microsomal sig 83.4 2.1 4.6E-05 23.7 3.1 32 38-69 11-43 (76)
233 COG2211 MelB Na+/melibiose sym 83.2 15 0.00032 27.8 8.2 53 2-54 330-389 (467)
234 TIGR00939 2a57 Equilibrative N 83.1 2.9 6.2E-05 31.1 4.6 54 3-56 376-429 (437)
235 KOG3098|consensus 82.6 17 0.00037 27.4 8.4 51 3-54 357-407 (461)
236 KOG1479|consensus 82.4 2.3 5E-05 31.3 3.7 55 2-56 346-400 (406)
237 PF04550 Phage_holin_2: Phage 78.7 1.9 4.1E-05 24.5 1.9 33 2-34 34-66 (89)
238 KOG1237|consensus 78.7 4.5 9.7E-05 31.2 4.4 53 6-58 465-517 (571)
239 KOG3810|consensus 78.1 16 0.00035 26.9 6.7 69 18-86 113-187 (433)
240 PF05631 DUF791: Protein of un 78.0 24 0.00052 25.7 8.2 26 2-27 124-150 (354)
241 PRK10133 L-fucose transporter; 76.9 14 0.00031 27.2 6.5 50 5-56 353-402 (438)
242 KOG1237|consensus 76.6 6.6 0.00014 30.3 4.8 75 2-76 155-239 (571)
243 KOG4686|consensus 75.0 3.4 7.4E-05 29.6 2.7 53 2-54 139-191 (459)
244 KOG3098|consensus 74.5 35 0.00075 25.8 8.2 53 2-54 105-157 (461)
245 PF01733 Nucleoside_tran: Nucl 74.1 1.1 2.3E-05 31.5 0.1 54 3-56 252-305 (309)
246 COG2223 NarK Nitrate/nitrite t 72.4 14 0.0003 27.5 5.3 70 2-76 321-395 (417)
247 PF13829 DUF4191: Domain of un 71.7 28 0.00061 23.6 7.3 48 59-106 50-99 (224)
248 PRK10473 multidrug efflux syst 70.6 23 0.00051 25.2 6.3 46 23-68 314-360 (392)
249 PF02487 CLN3: CLN3 protein; 70.3 7.4 0.00016 28.7 3.6 74 4-82 117-196 (402)
250 KOG2325|consensus 69.8 2.3 5E-05 32.1 1.0 61 8-68 397-461 (488)
251 PRK03612 spermidine synthase; 69.0 48 0.001 25.4 7.8 52 6-58 117-168 (521)
252 PRK10697 DNA-binding transcrip 67.1 20 0.00042 21.7 4.4 11 76-86 58-68 (118)
253 KOG2816|consensus 66.6 52 0.0011 24.8 7.5 48 11-58 342-389 (463)
254 PRK15034 nitrate/nitrite trans 64.9 45 0.00097 25.2 6.8 45 32-76 399-448 (462)
255 COG0738 FucP Fucose permease [ 63.5 13 0.00028 27.6 3.7 53 4-58 329-381 (422)
256 PF07672 MFS_Mycoplasma: Mycop 63.3 11 0.00024 26.2 3.2 50 31-80 2-60 (267)
257 PF01733 Nucleoside_tran: Nucl 62.9 2.4 5.3E-05 29.7 0.0 76 6-86 4-88 (309)
258 PF10183 ESSS: ESSS subunit of 62.4 16 0.00036 21.5 3.5 27 59-85 58-85 (105)
259 PF12273 RCR: Chitin synthesis 60.8 5 0.00011 24.5 1.1 16 61-76 1-16 (130)
260 PF06123 CreD: Inner membrane 60.6 36 0.00078 25.5 5.6 66 7-78 329-395 (430)
261 KOG3880|consensus 60.6 13 0.00028 26.9 3.2 54 5-58 348-401 (409)
262 KOG0637|consensus 60.6 4.6 0.0001 30.4 1.1 52 11-62 154-206 (498)
263 TIGR00885 fucP L-fucose:H+ sym 59.7 66 0.0014 23.5 7.7 61 3-66 9-73 (410)
264 PRK11715 inner membrane protei 58.9 39 0.00085 25.4 5.6 66 7-78 335-401 (436)
265 KOG3312|consensus 57.5 16 0.00034 23.1 2.9 29 77-105 26-54 (186)
266 COG3202 ATP/ADP translocase [E 56.7 68 0.0015 24.7 6.5 39 20-58 169-207 (509)
267 KOG1479|consensus 53.5 92 0.002 23.3 6.9 76 5-85 123-207 (406)
268 TIGR00769 AAA ADP/ATP carrier 52.5 87 0.0019 23.8 6.6 39 19-57 149-187 (472)
269 TIGR02978 phageshock_pspC phag 50.6 56 0.0012 19.9 5.0 27 60-86 31-63 (121)
270 PF15050 SCIMP: SCIMP protein 50.4 15 0.00032 22.3 1.9 13 60-72 4-16 (133)
271 PF11151 DUF2929: Protein of u 48.8 39 0.00084 17.5 5.3 37 47-83 18-54 (57)
272 PRK10692 hypothetical protein; 47.5 53 0.0012 18.7 4.2 18 59-76 37-54 (92)
273 PF08997 UCR_6-4kD: Ubiquinol- 47.1 42 0.00091 17.4 4.2 37 27-63 5-41 (56)
274 PF14715 FixP_N: N-terminal do 43.5 46 0.001 16.9 3.4 24 59-82 23-46 (51)
275 PF13937 DUF4212: Domain of un 41.3 66 0.0014 18.1 4.9 36 41-76 23-60 (81)
276 TIGR00886 2A0108 nitrite extru 41.3 27 0.00059 24.4 2.5 39 8-47 327-365 (366)
277 PF01306 LacY_symp: LacY proto 41.0 50 0.0011 24.6 3.8 42 43-84 146-191 (412)
278 PF06667 PspB: Phage shock pro 40.6 37 0.00081 18.8 2.4 12 95-106 38-49 (75)
279 PF10762 DUF2583: Protein of u 40.0 72 0.0016 18.1 4.0 11 66-76 44-54 (89)
280 KOG3626|consensus 38.1 1.1E+02 0.0024 24.8 5.3 47 10-56 597-644 (735)
281 TIGR02230 ATPase_gene1 F0F1-AT 36.7 91 0.002 18.3 6.5 12 47-58 55-66 (100)
282 COG2270 Permeases of the major 35.3 2E+02 0.0043 21.8 6.3 67 2-68 257-325 (438)
283 KOG4112|consensus 35.3 94 0.002 18.1 5.0 32 35-66 23-55 (101)
284 KOG4332|consensus 34.6 81 0.0018 22.7 3.8 70 5-74 350-423 (454)
285 KOG2927|consensus 34.6 31 0.00068 25.0 1.8 17 38-54 217-233 (372)
286 COG4698 Uncharacterized protei 33.6 66 0.0014 21.1 3.0 16 60-75 11-26 (197)
287 PRK09458 pspB phage shock prot 32.8 78 0.0017 17.5 2.8 11 95-105 38-48 (75)
288 PRK10621 hypothetical protein; 32.2 1.7E+02 0.0037 20.1 5.4 36 26-62 173-208 (266)
289 PF13721 SecD-TM1: SecD export 32.0 89 0.0019 18.2 3.2 28 59-86 6-33 (101)
290 CHL00132 psaF photosystem I su 30.7 1.3E+02 0.0027 19.8 3.9 47 81-127 32-80 (185)
291 PF02990 EMP70: Endomembrane p 30.7 2E+02 0.0044 22.1 5.7 39 27-65 289-334 (521)
292 PF15061 DUF4538: Domain of un 30.7 62 0.0013 16.9 2.1 20 59-78 4-23 (58)
293 PF04120 Iron_permease: Low af 30.4 1.4E+02 0.003 18.5 7.0 21 62-82 41-61 (132)
294 KOG0055|consensus 30.1 3.1E+02 0.0067 23.9 6.8 19 59-77 807-825 (1228)
295 PF03825 Nuc_H_symport: Nucleo 30.0 2.3E+02 0.0049 20.9 5.9 24 62-85 160-183 (400)
296 TIGR00782 ccoP cytochrome c ox 28.0 80 0.0017 22.1 3.0 24 59-82 29-52 (285)
297 COG1113 AnsP Gamma-aminobutyra 28.0 1.4E+02 0.003 22.8 4.2 12 77-88 118-129 (462)
298 PF07556 DUF1538: Protein of u 26.9 2.1E+02 0.0045 19.4 7.7 64 3-67 66-133 (212)
299 PF01925 TauE: Sulfite exporte 26.8 2E+02 0.0042 19.1 5.8 40 25-65 159-198 (240)
300 PF09726 Macoilin: Transmembra 25.4 2.2E+02 0.0048 23.0 5.2 43 4-46 42-84 (697)
301 TIGR03647 Na_symport_sm probab 25.4 1.3E+02 0.0029 16.7 5.0 35 42-76 20-56 (77)
302 PTZ00265 multidrug resistance 25.2 5E+02 0.011 23.2 8.2 20 59-78 196-215 (1466)
303 KOG0055|consensus 25.1 4.7E+02 0.01 22.9 8.0 34 43-76 153-187 (1228)
304 PF14003 YlbE: YlbE-like prote 24.7 1.1E+02 0.0023 16.5 2.4 18 79-96 6-23 (65)
305 PF04281 Tom22: Mitochondrial 24.7 1.9E+02 0.004 18.1 5.7 20 24-43 60-79 (137)
306 PF09771 Tmemb_18A: Transmembr 24.4 1.5E+02 0.0032 18.3 3.3 26 59-84 29-54 (125)
307 TIGR02976 phageshock_pspB phag 24.3 1.1E+02 0.0023 16.9 2.5 7 98-104 41-47 (75)
308 PLN02453 complex I subunit 24.1 1.7E+02 0.0036 17.3 3.8 27 59-85 60-87 (105)
309 cd00280 TRFH Telomeric Repeat 23.1 2E+02 0.0043 19.2 3.9 29 89-117 122-150 (200)
310 TIGR00769 AAA ADP/ATP carrier 22.7 3.6E+02 0.0077 20.7 8.3 63 11-73 278-345 (472)
311 PRK00888 ftsB cell division pr 21.5 1.9E+02 0.0041 17.0 4.4 18 87-104 29-46 (105)
312 TIGR01478 STEVOR variant surfa 21.4 2.1E+02 0.0046 20.3 4.0 35 47-81 248-282 (295)
313 PF11286 DUF3087: Protein of u 21.2 2.4E+02 0.0053 18.2 4.9 12 59-70 50-61 (165)
314 PF06779 DUF1228: Protein of u 21.2 1.7E+02 0.0038 16.5 6.8 40 16-58 11-50 (85)
315 TIGR00805 oat sodium-independe 20.9 93 0.002 24.5 2.5 49 8-56 527-576 (633)
316 PTZ00370 STEVOR; Provisional 20.9 2.2E+02 0.0048 20.3 4.0 35 47-81 244-278 (296)
317 KOG2563|consensus 20.8 4E+02 0.0087 20.6 6.7 56 2-57 268-323 (480)
318 TIGR00939 2a57 Equilibrative N 20.1 3.9E+02 0.0084 20.1 7.0 77 4-85 111-199 (437)
319 COG4700 Uncharacterized protei 20.1 2.2E+02 0.0048 19.2 3.7 24 61-84 28-53 (251)
320 PF04024 PspC: PspC domain; I 20.1 1.5E+02 0.0033 15.5 3.5 27 59-85 30-60 (61)
No 1
>KOG0569|consensus
Probab=99.85 E-value=1.4e-20 Score=136.17 Aligned_cols=110 Identities=30% Similarity=0.506 Sum_probs=100.9
Q ss_pred ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHH
Q psy168 1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILA 74 (130)
Q Consensus 1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~ 74 (130)
+++++|+++|+..|......+.|+.|++|.+.||....+.+++.++|.+++..++..- .|++.+.+..++.++.
T Consensus 118 ~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~ 197 (485)
T KOG0569|consen 118 MLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ 197 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999997764432 7999999999999999
Q ss_pred HHHHhhcccchhHHHh-cCChHHHHHHHHHhhCCCCc
Q psy168 75 FAMILFLPESPTWLIY-KGRMVDAEKSLRWLRGWSKK 110 (130)
Q Consensus 75 ~~~~~~~pes~~~~~~-~~~~~~a~~~l~~~~~~~~~ 110 (130)
.+..+++||||+|+.. |++.++|+++++.+++.+++
T Consensus 198 l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~ 234 (485)
T KOG0569|consen 198 LALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV 234 (485)
T ss_pred HHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc
Confidence 9999999999999977 89999999999999998653
No 2
>KOG0254|consensus
Probab=99.76 E-value=1.7e-17 Score=122.00 Aligned_cols=107 Identities=35% Similarity=0.557 Sum_probs=100.6
Q ss_pred ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHH
Q psy168 1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAF 75 (130)
Q Consensus 1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~ 75 (130)
+++++|++.|+|.|....+.+.|++|++|++.||...+..+.+..+|..++.+.+... +||..+++..+++++.+
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~ 223 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILA 223 (513)
T ss_pred HHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999998888777 59999999999999988
Q ss_pred HHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168 76 AMILFLPESPTWLIYKGRMVDAEKSLRWLRGW 107 (130)
Q Consensus 76 ~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~ 107 (130)
+..++.||||+|+.++++.+++++.++++++.
T Consensus 224 ~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~ 255 (513)
T KOG0254|consen 224 LGMLFLPESPRWLIEKGRLEEAKRSLKRLRGL 255 (513)
T ss_pred HHHHhCCCChHHHHHcCChHHHHHHHHHHhCC
Confidence 88899999999999999999999999999985
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.72 E-value=6.3e-17 Score=118.67 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=89.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh------------------------
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------------------------ 57 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------------------ 57 (130)
++++|++.|++.|...+..+.+++|++|+++|++..++.+.+..+|.++++.+...
T Consensus 118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (502)
T TIGR00887 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVP 197 (502)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 56899999999999999999999999999999999999999999988888766431
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHhhcccchhHHHhcCChH-HHHHHHHHhhC
Q psy168 58 ---TDWRTTTLISSVVPILAFAMILFLPESPTWLIYKGRMV-DAEKSLRWLRG 106 (130)
Q Consensus 58 ---~~wr~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~-~a~~~l~~~~~ 106 (130)
.+||+.+.+.++++++.++..+++||||+|+..+++.+ ++++.+++.++
T Consensus 198 ~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 198 AVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 15999999988888877778889999999998888764 46766776654
No 4
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.70 E-value=2.1e-16 Score=120.16 Aligned_cols=107 Identities=20% Similarity=0.306 Sum_probs=95.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------------hhHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------------DWRTTT 64 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------------~wr~~~ 64 (130)
++++|++.|++.|+..++...+++|++|++.|+...++++.++.+|.++++.++..+ +||+.+
T Consensus 258 llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~ 337 (742)
T TIGR01299 258 FLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFV 337 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHH
Confidence 578999999999999999999999999999999999999999999998888654221 699999
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHhcCChHHHHHHHHHhhCCC
Q psy168 65 LISSVVPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWS 108 (130)
Q Consensus 65 ~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~~ 108 (130)
++.+++.++.++..+++||||+|+..+++.+++.+.++++.+.|
T Consensus 338 ~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 338 IVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 99888887777788899999999999999999999999988765
No 5
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.69 E-value=4.9e-20 Score=132.94 Aligned_cols=107 Identities=36% Similarity=0.596 Sum_probs=96.6
Q ss_pred ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h---hHHHHHHHHHHHHH
Q psy168 1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D---WRTTTLISSVVPIL 73 (130)
Q Consensus 1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~---wr~~~~~~~~~~~~ 73 (130)
+++++|++.|++.|+..+....|+.|..|++.|++..++.+.++.+|.+++..++... + ||+.+++.++++++
T Consensus 104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~ 183 (451)
T PF00083_consen 104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL 183 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3578999999999999999999999999999999999999999999998888775533 4 99999999999988
Q ss_pred HHHHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168 74 AFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGW 107 (130)
Q Consensus 74 ~~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~ 107 (130)
..+...++||||+|+..+++.+||++.++++++.
T Consensus 184 ~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~ 217 (451)
T PF00083_consen 184 VLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGK 217 (451)
T ss_pred ccccccccccccceeccccccccccccccccccc
Confidence 8777789999999999999999999999997665
No 6
>KOG0255|consensus
Probab=99.67 E-value=1.3e-15 Score=112.17 Aligned_cols=106 Identities=28% Similarity=0.299 Sum_probs=90.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWRTTTLISSVVPILAFAMILF 80 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~~~~~~~~~~~~~~ 80 (130)
+++.||+.|++.++...++..+++|+.+++.|+..+++....+..|....+..++.. +||+.+++..+++.+.++.+++
T Consensus 174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999999999999994444444444444444444 8999999999999988878777
Q ss_pred cccchhHHHhcCChHHHHHHHHHhhCC
Q psy168 81 LPESPTWLIYKGRMVDAEKSLRWLRGW 107 (130)
Q Consensus 81 ~pes~~~~~~~~~~~~a~~~l~~~~~~ 107 (130)
.||||+|+..+++.+++.+.++++.+.
T Consensus 254 ~~Es~rwl~~~g~~~~a~~~l~~~a~~ 280 (521)
T KOG0255|consen 254 PPESPRWLLSKGRIDEAIKILKKIAKL 280 (521)
T ss_pred cCcChHHHHHcCchHHHHHHHHHHHhh
Confidence 789999999999999999999997654
No 7
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.66 E-value=2.7e-15 Score=109.02 Aligned_cols=106 Identities=26% Similarity=0.486 Sum_probs=90.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh------------hhhHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------------TDWRTTTLISSV 69 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------~~wr~~~~~~~~ 69 (130)
++++|+++|++.|+..+....+++|++|+++|++.+++.+.+..+|..+++.++.. .+||+.|++.++
T Consensus 123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~ 202 (479)
T PRK10077 123 FVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAI 202 (479)
T ss_pred HHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999988766431 289999999888
Q ss_pred HHHHHHHHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168 70 VPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGW 107 (130)
Q Consensus 70 ~~~~~~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~ 107 (130)
+.++..+..+++||+|+|+..+++.+++++.+++..+.
T Consensus 203 ~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 240 (479)
T PRK10077 203 PALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN 240 (479)
T ss_pred HHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence 87777666778999999988888888877777766543
No 8
>TIGR00898 2A0119 cation transport protein.
Probab=99.65 E-value=3.1e-15 Score=109.57 Aligned_cols=106 Identities=27% Similarity=0.365 Sum_probs=95.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWRTTTLISSVVPILAFAMILF 80 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~~~~~~~~~~~~~~ 80 (130)
++++|++.|++.+...+....+++|++|+++|+...++.+.+..+|.++++.++..+ +||+.+++.+++.++..+..++
T Consensus 183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999888776 8999999999888887777788
Q ss_pred cccchhHHHhcCChHHHHHHHHHhhCC
Q psy168 81 LPESPTWLIYKGRMVDAEKSLRWLRGW 107 (130)
Q Consensus 81 ~pes~~~~~~~~~~~~a~~~l~~~~~~ 107 (130)
.||||+|+..+++.+++.+.+++..+.
T Consensus 263 ~~esp~~l~~~~~~~~a~~~l~~~~~~ 289 (505)
T TIGR00898 263 VPESPRWLISQGRIEEALKILQRIAKI 289 (505)
T ss_pred cCCChHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988888776544
No 9
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.51 E-value=7e-13 Score=95.42 Aligned_cols=106 Identities=35% Similarity=0.595 Sum_probs=89.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhh---hhh----hhHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLN---AIT----DWRTTTLISSVVPILA 74 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~~----~wr~~~~~~~~~~~~~ 74 (130)
++++|++.|++.+...+....+++|++|+++|++..++++.+..+|..+++.+. ... +||+.|++..+..++.
T Consensus 130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~ 209 (481)
T TIGR00879 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL 209 (481)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999999999999999999999988 332 8999999977666666
Q ss_pred HHHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168 75 FAMILFLPESPTWLIYKGRMVDAEKSLRWLRGW 107 (130)
Q Consensus 75 ~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~ 107 (130)
.+..++.||+|+++..+++.+++.+...+..+.
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (481)
T TIGR00879 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGT 242 (481)
T ss_pred HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCC
Confidence 667788999998887777777766666655443
No 10
>KOG0253|consensus
Probab=99.49 E-value=3.7e-13 Score=94.58 Aligned_cols=105 Identities=21% Similarity=0.160 Sum_probs=94.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
+++.|.+.|+|.|+ .|...++-.|..|...|...+-+. ..|.+|.++...+.... ||||.....+.+..+++.+
T Consensus 169 L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f 246 (528)
T KOG0253|consen 169 LCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARF 246 (528)
T ss_pred hhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH
Confidence 67889999999999 888889999999999999998888 99999999998887755 9999999988888888889
Q ss_pred HhhcccchhHHHhcCChHHHHHHHHHhhCCC
Q psy168 78 ILFLPESPTWLIYKGRMVDAEKSLRWLRGWS 108 (130)
Q Consensus 78 ~~~~pes~~~~~~~~~~~~a~~~l~~~~~~~ 108 (130)
+++.||||+|+..++++++|.+.+.++.+.|
T Consensus 247 ~~w~~ESpRf~~~~G~~~kAletL~kiArmN 277 (528)
T KOG0253|consen 247 LVWVYESPRFYLAKGDDYKALETLHKIARMN 277 (528)
T ss_pred HhhcccCcchhhhcCChHHHHHHHHHHHHhc
Confidence 9999999999999999999999988876554
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.48 E-value=2.2e-13 Score=99.88 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=73.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh------------hhhhHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA------------ITDWRTTTLISSV 69 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------~~~wr~~~~~~~~ 69 (130)
++++|+++|++.|+.++....+++|++|+++||+..++.+.+..+|..++..+.. ..+||+.|++..+
T Consensus 121 l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~ 200 (490)
T PRK10642 121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALP 200 (490)
T ss_pred HHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHH
Confidence 5789999999999999999999999999999999999998888888777764421 1289999999876
Q ss_pred HHHHHHHHHhhcccchhHHHhc
Q psy168 70 VPILAFAMILFLPESPTWLIYK 91 (130)
Q Consensus 70 ~~~~~~~~~~~~pes~~~~~~~ 91 (130)
+.++..+.....||||+|...+
T Consensus 201 ~~l~~~~~~~~~~esp~~~~~~ 222 (490)
T PRK10642 201 LGIIGLYLRHALEETPAFQQHV 222 (490)
T ss_pred HHHHHHHHHHcCCCChhHHHHH
Confidence 6665455667789999986443
No 12
>KOG2533|consensus
Probab=99.40 E-value=6.5e-13 Score=97.29 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=78.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh-------h---hhHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI-------T---DWRTTTLISSVVP 71 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~---~wr~~~~~~~~~~ 71 (130)
+++.|++.|+.+++..|....+++.|+.+++|++.++++..+.++|.+++.++++. . +|||.|++.++++
T Consensus 137 ~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~ 216 (495)
T KOG2533|consen 137 LIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVIT 216 (495)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHH
Confidence 56889999999999999999999999999999999999999999999999888776 2 9999999999999
Q ss_pred HHHHH-HHhhcccchh
Q psy168 72 ILAFA-MILFLPESPT 86 (130)
Q Consensus 72 ~~~~~-~~~~~pes~~ 86 (130)
++..+ .++++|+.|.
T Consensus 217 ~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 217 LVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHheEEEEecCChh
Confidence 98876 7788999986
No 13
>PRK09952 shikimate transporter; Provisional
Probab=99.38 E-value=2.1e-12 Score=93.49 Aligned_cols=89 Identities=18% Similarity=0.033 Sum_probs=73.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh------------hhhhHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA------------ITDWRTTTLISSV 69 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------~~~wr~~~~~~~~ 69 (130)
++++|+++|++.|+..+....+++|+.|+++|++..+..+.+..+|.+++..+.. ..+||+.|++.++
T Consensus 128 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~ 207 (438)
T PRK09952 128 LVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIV 207 (438)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999888865432 1389999999887
Q ss_pred HHHHHHHHHhhcccchhHHHh
Q psy168 70 VPILAFAMILFLPESPTWLIY 90 (130)
Q Consensus 70 ~~~~~~~~~~~~pes~~~~~~ 90 (130)
+.++........||+|+|...
T Consensus 208 ~~l~~~~l~~~~~es~~~~~~ 228 (438)
T PRK09952 208 LVLIALWVRNGMEESAEFEQQ 228 (438)
T ss_pred HHHHHHHHHHhCCCChhHHHH
Confidence 765554455678999987543
No 14
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.35 E-value=6.9e-12 Score=89.17 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=72.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|+++|++.+. .......++|++|+++|++..++.+.+..+|..+++.++..+ +||+.|++.++++.+..+
T Consensus 82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 57899999999996 556667779999999999999999999999999998887766 999999998777766554
Q ss_pred HHhhcccchhH
Q psy168 77 MILFLPESPTW 87 (130)
Q Consensus 77 ~~~~~pes~~~ 87 (130)
.+++.||+|++
T Consensus 161 ~~~~lp~~p~~ 171 (368)
T TIGR00903 161 VLAALPALPFQ 171 (368)
T ss_pred HHHHcCCCCCC
Confidence 67788999865
No 15
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.34 E-value=7.1e-12 Score=91.94 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
++++|++.|++.+........++.|.+|++.|++..++ ++++...|.+...+.+... +|+..++...+++++..+
T Consensus 345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~ 424 (490)
T PRK10642 345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI 424 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 34578888887776666777888999999999998886 6666555543333333322 577777766666666666
Q ss_pred HHhhcccchhHHHhc-----CChHHHHHHHHHhhC
Q psy168 77 MILFLPESPTWLIYK-----GRMVDAEKSLRWLRG 106 (130)
Q Consensus 77 ~~~~~pes~~~~~~~-----~~~~~a~~~l~~~~~ 106 (130)
..++.||||+|+.++ ++.+||++.++++++
T Consensus 425 ~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 425 TGVTMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HHHHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 666789999998765 889999999999874
No 16
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.30 E-value=2e-11 Score=88.16 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=71.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh------------hhhhHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA------------ITDWRTTTLISSV 69 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------~~~wr~~~~~~~~ 69 (130)
++++|+++|++.|+..+....+++|+.|+++|++..+..+.+...|.++++.+.. ..+||+.|++.++
T Consensus 127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~ 206 (432)
T PRK10406 127 LLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAV 206 (432)
T ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 6789999999999999999999999999999999999888888777777765422 1289999999888
Q ss_pred HHHHHHHHHhhcccchhH
Q psy168 70 VPILAFAMILFLPESPTW 87 (130)
Q Consensus 70 ~~~~~~~~~~~~pes~~~ 87 (130)
+.++........||+|++
T Consensus 207 ~~ll~~~~~~~~~e~~~~ 224 (432)
T PRK10406 207 LAVVALWLRRQLDETSQQ 224 (432)
T ss_pred HHHHHHHHHhcCCCCchH
Confidence 777766566678898765
No 17
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.29 E-value=8.8e-11 Score=83.30 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=74.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h--hHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D--WRTTTLISSVVPILAF 75 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--wr~~~~~~~~~~~~~~ 75 (130)
++++|++.|++.+...+....++.|+.|+++|++..++.+.+..+|..+++.+.... + ||+.|++.+++.++..
T Consensus 103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999998876654 4 9999998776666655
Q ss_pred HHHhhcccchhHHH
Q psy168 76 AMILFLPESPTWLI 89 (130)
Q Consensus 76 ~~~~~~pes~~~~~ 89 (130)
+.....||++.+..
T Consensus 183 ~~~~~~~~~~~~~~ 196 (405)
T TIGR00891 183 WLRKNIPEAEDWKE 196 (405)
T ss_pred HHHHhCCCChhHHH
Confidence 56677899876643
No 18
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.29 E-value=8.9e-12 Score=89.66 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=73.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh----------hhhHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI----------TDWRTTTLISSVVP 71 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----------~~wr~~~~~~~~~~ 71 (130)
+++.|+++|++.+...+....+++|++|+++|++..++++.+..+|..+++.++.. .+||+.|++.+++.
T Consensus 99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~ 178 (412)
T TIGR02332 99 LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPS 178 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHH
Confidence 57899999999999999888999999999999999999999999999988877543 28999999988887
Q ss_pred HHHHH-HHhhcccchh
Q psy168 72 ILAFA-MILFLPESPT 86 (130)
Q Consensus 72 ~~~~~-~~~~~pes~~ 86 (130)
++..+ .++++||+|.
T Consensus 179 l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 179 VILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHhhccCCCcc
Confidence 76554 6677899884
No 19
>KOG2532|consensus
Probab=99.25 E-value=2.4e-11 Score=88.66 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=75.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
+++.|+++|++.|..++....+.+.|.|+++|++..++...+..+|.+++..+++.+ ||+..|++.++.+++..+
T Consensus 131 ~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~ 210 (466)
T KOG2532|consen 131 LLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFI 210 (466)
T ss_pred hHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999998776665 899999999999999877
Q ss_pred -HHhhcccchh
Q psy168 77 -MILFLPESPT 86 (130)
Q Consensus 77 -~~~~~pes~~ 86 (130)
.+++..|+|.
T Consensus 211 ~w~~~~~d~P~ 221 (466)
T KOG2532|consen 211 LWFLFYSDSPS 221 (466)
T ss_pred HHHHHhcCCcc
Confidence 4556667775
No 20
>KOG0252|consensus
Probab=99.23 E-value=6.5e-12 Score=90.19 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=82.7
Q ss_pred ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------------------hhH
Q psy168 1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------------------DWR 61 (130)
Q Consensus 1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------------------~wr 61 (130)
++.+.|+++|+|.|+++|++.+..+|.+..+.||...+.+..++..|.+.|.+++..+ -||
T Consensus 146 ~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWR 225 (538)
T KOG0252|consen 146 TLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWR 225 (538)
T ss_pred HHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHH
Confidence 3677899999999999999999999999999999999998888888887777664433 599
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHhc-CChHHHHHH
Q psy168 62 TTTLISSVVPILAFAMILFLPESPTWLIYK-GRMVDAEKS 100 (130)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~pes~~~~~~~-~~~~~a~~~ 100 (130)
..+.+.+++++.+....+.+|||++|-... ++.++|.+.
T Consensus 226 l~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d 265 (538)
T KOG0252|consen 226 IIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGD 265 (538)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhc
Confidence 999999999999998999999999986332 333444433
No 21
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.14 E-value=2.3e-10 Score=81.52 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=75.2
Q ss_pred ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+++++|++.|+..|..++++..+.+++.|+++|++++++...+..++.++|..++.++ |||..|+..+..+++.++
T Consensus 103 ~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~ 182 (394)
T COG2814 103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALL 182 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999998888887766 999999999999988876
Q ss_pred -HHhhcc
Q psy168 77 -MILFLP 82 (130)
Q Consensus 77 -~~~~~p 82 (130)
.+..+|
T Consensus 183 ~~~~~lP 189 (394)
T COG2814 183 LLWKLLP 189 (394)
T ss_pred HHHHhCC
Confidence 777788
No 22
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.12 E-value=7.8e-10 Score=79.03 Aligned_cols=88 Identities=23% Similarity=0.420 Sum_probs=74.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
+++.|++.|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++... +||+.|++.++...+..+
T Consensus 106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999998876544 899999987766555544
Q ss_pred HHhhcccchhHHH
Q psy168 77 MILFLPESPTWLI 89 (130)
Q Consensus 77 ~~~~~pes~~~~~ 89 (130)
...+.||+|++..
T Consensus 186 ~~~~l~~~~~~~~ 198 (406)
T PRK11551 186 LMRWLPESRAFAQ 198 (406)
T ss_pred HHHhCCCChhHHh
Confidence 5566899887643
No 23
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.11 E-value=1.6e-10 Score=84.13 Aligned_cols=85 Identities=13% Similarity=0.186 Sum_probs=72.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
+++.|+++|++.+...+....+++|++|+++|++..++.+.+..+|..+++.+...+ +||+.|++.++++++..+
T Consensus 134 l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~ 213 (465)
T TIGR00894 134 VVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSL 213 (465)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999888775543 899999998888777665
Q ss_pred -HHhhcccchh
Q psy168 77 -MILFLPESPT 86 (130)
Q Consensus 77 -~~~~~pes~~ 86 (130)
.+.+.+|+|+
T Consensus 214 ~~~~~~~~~p~ 224 (465)
T TIGR00894 214 LWFVFPADDPS 224 (465)
T ss_pred HHHHHhcCCcc
Confidence 4455667774
No 24
>PRK15075 citrate-proton symporter; Provisional
Probab=99.10 E-value=6.6e-10 Score=80.40 Aligned_cols=86 Identities=24% Similarity=0.380 Sum_probs=64.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh------------hhhHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------------TDWRTTTLISSV 69 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------~~wr~~~~~~~~ 69 (130)
++++|+++|++.|...+....+++|++|+++|++..++.+.+..+|..+++.++.. .+||+.|++..+
T Consensus 120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 46799999999999999889999999999999999999887766666655544332 289999998654
Q ss_pred HHHHHHHHHhhcccchhH
Q psy168 70 VPILAFAMILFLPESPTW 87 (130)
Q Consensus 70 ~~~~~~~~~~~~pes~~~ 87 (130)
...+........||++.+
T Consensus 200 ~~~~~~~~~~~~~e~~~~ 217 (434)
T PRK15075 200 IVPFIFLIRRSLEETEEF 217 (434)
T ss_pred HHHHHHHHHHhcCCCHHH
Confidence 433333334445676543
No 25
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.10 E-value=9.9e-10 Score=83.14 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=70.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------------------
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----------------------- 58 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------------------- 58 (130)
++++|+++|+|.++.++....++.|++|+++|+...++++.+..+|..++++++..+
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr 254 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR 254 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence 568999999999999999999999999999999999999999999999998875533
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHhhcccc
Q psy168 59 ---DWRTTTLISSVVPILAFAMILFLPES 84 (130)
Q Consensus 59 ---~wr~~~~~~~~~~~~~~~~~~~~pes 84 (130)
.|+..|++.+++.++..+.++++|++
T Consensus 255 WiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 255 WIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 26777888877777766656666664
No 26
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.10 E-value=5.1e-10 Score=80.41 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=70.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
++++|++.|++.|..++....++.|++|+++|++..++.+.+..+|.++++.+.... +||+.|++..++.++....
T Consensus 109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~ 188 (426)
T PRK12307 109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYI 188 (426)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999998776543 8999998865444433334
Q ss_pred HhhcccchhHH
Q psy168 78 ILFLPESPTWL 88 (130)
Q Consensus 78 ~~~~pes~~~~ 88 (130)
....||++++.
T Consensus 189 ~~~~p~~~~~~ 199 (426)
T PRK12307 189 RARAPESKEWE 199 (426)
T ss_pred HHHCCCChHHH
Confidence 44567776543
No 27
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.10 E-value=2e-10 Score=80.77 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|++.|++.+...+....+++|++|+++|++..++.+....+|..+++.+.... +||+.|+..+++.++..+
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999998887654 899999988877766555
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
.++..||+|
T Consensus 165 ~~~~~~~~~ 173 (399)
T TIGR00893 165 WLKFIPDPP 173 (399)
T ss_pred hhheecCCC
Confidence 445566655
No 28
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.08 E-value=5.9e-10 Score=78.55 Aligned_cols=87 Identities=25% Similarity=0.347 Sum_probs=71.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh------------hhhHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI------------TDWRTTTLISSV 69 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------~~wr~~~~~~~~ 69 (130)
++++|+++|++.+...+....+++|+.|+++|+...+..+.+..+|..+++.+... .+||+.+++.++
T Consensus 99 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 178 (394)
T TIGR00883 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAV 178 (394)
T ss_pred HHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999888776432 279999988776
Q ss_pred HHHHHHHHHhhcccchhHH
Q psy168 70 VPILAFAMILFLPESPTWL 88 (130)
Q Consensus 70 ~~~~~~~~~~~~pes~~~~ 88 (130)
+.++..+.....||++++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~ 197 (394)
T TIGR00883 179 LVLIGLYLRRNLEETPVFE 197 (394)
T ss_pred HHHHHHHHHHhcCCChhHH
Confidence 6665555556678877543
No 29
>TIGR00895 2A0115 benzoate transport.
Probab=99.08 E-value=6.2e-10 Score=78.65 Aligned_cols=90 Identities=27% Similarity=0.382 Sum_probs=75.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH-H
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF-A 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~-~ 76 (130)
+++.|++.|++.+...+....+++|+.|+++|++..++.+.+..+|..+++.+.... +|++.+++.++...+.. +
T Consensus 108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999998887655 89999998865555544 4
Q ss_pred HHhhcccchhHHHhc
Q psy168 77 MILFLPESPTWLIYK 91 (130)
Q Consensus 77 ~~~~~pes~~~~~~~ 91 (130)
...+.||++++...+
T Consensus 188 ~~~~~~~~~~~~~~~ 202 (398)
T TIGR00895 188 LMRFLPESIDFLVSK 202 (398)
T ss_pred HHHhCCCCChHHHhc
Confidence 667789988765444
No 30
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.08 E-value=1.6e-09 Score=78.10 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=71.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|+++|++.+...+....++.|++|+++|++..+++.....+|..+++.++... +||+.|++.++..++..+
T Consensus 107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 107 FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 578999999999876777778899999999999999999998888888888887655 899999998887777655
Q ss_pred HHhhcccchh
Q psy168 77 MILFLPESPT 86 (130)
Q Consensus 77 ~~~~~pes~~ 86 (130)
.++..||+++
T Consensus 187 ~~~~lp~~~~ 196 (413)
T PRK15403 187 LLLAMPETVK 196 (413)
T ss_pred HHHhCCCCcc
Confidence 4566888753
No 31
>PRK03545 putative arabinose transporter; Provisional
Probab=99.03 E-value=1.2e-09 Score=77.91 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=71.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|+++|++.+...+....+++|++|+++|++..++++....+|..+++.++..+ +||+.|++.+++.++..+
T Consensus 100 l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~ 179 (390)
T PRK03545 100 LLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 578999999999988888899999999999999999999999999999998886654 999999998887776654
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
.+...||.|
T Consensus 180 ~~~~~~~~~ 188 (390)
T PRK03545 180 LIKLLPLLP 188 (390)
T ss_pred HHHhCCCCC
Confidence 445567654
No 32
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.01 E-value=3.1e-09 Score=76.96 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
+++.|++.|++.|...+....+++|++|+++|++..++++.+..+|..+++.+.... +||+.|++.+++.++..+
T Consensus 114 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 114 FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 456899999999998899999999999999999999999999999999998776544 999999998877665544
Q ss_pred HHhhcccchhH
Q psy168 77 MILFLPESPTW 87 (130)
Q Consensus 77 ~~~~~pes~~~ 87 (130)
..+..+|+|.+
T Consensus 194 ~~~~~~~~p~~ 204 (434)
T PRK11663 194 LCWRLRDKPQA 204 (434)
T ss_pred HHHHcCCCHhh
Confidence 55567888754
No 33
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.00 E-value=2.6e-09 Score=76.56 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=71.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|++.|++.|...+....+++|++|+++|++..+.......+|..+++.++..+ +||+.|++.++...+..+
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999988887765 999999998776665544
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
.....||++
T Consensus 191 ~~~~~p~~~ 199 (394)
T PRK10213 191 IIKSLPSLP 199 (394)
T ss_pred HHHHCCCCC
Confidence 344567765
No 34
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.99 E-value=1.4e-09 Score=75.78 Aligned_cols=84 Identities=29% Similarity=0.480 Sum_probs=71.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|++.|++.+...+....++.|++|+++|++..+..+.+..+|..+++.++..+ +||+.|++.++..++..+
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 578999999999999999999999999999999999999999999999999987766 899999999888887765
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
...+.++.+
T Consensus 168 ~~~~~~~~~ 176 (352)
T PF07690_consen 168 FILFLPEPP 176 (352)
T ss_dssp HHCCC---S
T ss_pred Hhhhhhhcc
Confidence 335555544
No 35
>KOG1330|consensus
Probab=98.98 E-value=4.5e-11 Score=85.90 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=74.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
+.++|.++|+|++...++++.+++|.+|.++|++..++++.....|..+|.+.+... .|||.|+..++.++++.+
T Consensus 124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~ 203 (493)
T KOG1330|consen 124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGL 203 (493)
T ss_pred HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999998887766 599999999999998877
Q ss_pred -HHhhcccc
Q psy168 77 -MILFLPES 84 (130)
Q Consensus 77 -~~~~~pes 84 (130)
.+++.+|.
T Consensus 204 L~~~f~~eP 212 (493)
T KOG1330|consen 204 LVFLFVREP 212 (493)
T ss_pred HHHhhccCc
Confidence 55666664
No 36
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.95 E-value=9.3e-09 Score=72.66 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=71.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|++.|++.+...+....++.|++|+++|++..+..+....+|..+++.++... +||+.+++.++...+..+
T Consensus 96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (385)
T TIGR00710 96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSAL 175 (385)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999988887654 899999988777666555
Q ss_pred HHhhcccchh
Q psy168 77 MILFLPESPT 86 (130)
Q Consensus 77 ~~~~~pes~~ 86 (130)
.++..||+++
T Consensus 176 ~~~~~~~~~~ 185 (385)
T TIGR00710 176 IFFILPETLP 185 (385)
T ss_pred HHHhCCCCCC
Confidence 4556677653
No 37
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.95 E-value=8e-09 Score=75.65 Aligned_cols=87 Identities=21% Similarity=0.299 Sum_probs=72.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
++++|++.|++.+...+....++.|.+|+++|++..++......+|..+++.+...+ +||+.|++..++..+..+.
T Consensus 111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 190 (496)
T PRK03893 111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWL 190 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999998886655 8999998865554444445
Q ss_pred HhhcccchhHH
Q psy168 78 ILFLPESPTWL 88 (130)
Q Consensus 78 ~~~~pes~~~~ 88 (130)
....||++++.
T Consensus 191 ~~~~p~~~~~~ 201 (496)
T PRK03893 191 RKNLPEAEDWK 201 (496)
T ss_pred HHhCCCchhhh
Confidence 56678877653
No 38
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.94 E-value=5.2e-09 Score=77.05 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=69.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
++++|+++|++.+...+.....+.+.+ |+++|++..+++.....+|..+++.++..+ +|||.|++.....++..+
T Consensus 97 li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~ 176 (495)
T PRK14995 97 LIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMG 176 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Confidence 578999999999988887777776664 789999999999999999999999987766 999999987666555544
Q ss_pred -HHhhcccch
Q psy168 77 -MILFLPESP 85 (130)
Q Consensus 77 -~~~~~pes~ 85 (130)
...+.|+.+
T Consensus 177 l~~~~l~~~~ 186 (495)
T PRK14995 177 LTARYVPRQA 186 (495)
T ss_pred HHHHhCCCCC
Confidence 556677765
No 39
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.91 E-value=2.6e-09 Score=77.86 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=71.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|+++|++.+...+....++.|++|+++|++..+++.....+|..+++.++... +||+.|++...+.++..+
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV 172 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999998887665 899999988777666554
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
..+..||++
T Consensus 173 ~~~~~~~~~ 181 (485)
T TIGR00711 173 AFFILPRDK 181 (485)
T ss_pred HHHHcCCcc
Confidence 455566643
No 40
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.90 E-value=7.8e-09 Score=73.63 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=70.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
+++.|++.|++.|...+....+++|+.++++|++..+.+..+..+|..+++.++... +||+.|++.++...+..+
T Consensus 94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 577999999999988888888999999999999999999988899888888776544 899999998877666554
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
.+...||.+
T Consensus 174 ~~~~lp~~~ 182 (382)
T PRK10091 174 IYFWVPDIR 182 (382)
T ss_pred HHHhCCCCC
Confidence 555678754
No 41
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.89 E-value=1.7e-08 Score=73.12 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=69.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI-----TDWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-----~~wr~~~~~~~~~~~~~~~ 76 (130)
+.+.|++.|++.|...+....++.|++|+++|++..++++....+|..+++.+... .+||+.|++.+++.++..+
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~ 200 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 35679999999998888888999999999999999999999988888877655332 2899999998887777544
Q ss_pred -HHhhcccchhH
Q psy168 77 -MILFLPESPTW 87 (130)
Q Consensus 77 -~~~~~pes~~~ 87 (130)
.+++.||+|..
T Consensus 201 ~~~~~~~~~~~~ 212 (438)
T TIGR00712 201 FAFAMMRDTPQS 212 (438)
T ss_pred HHHHhccCCHHh
Confidence 66677887753
No 42
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.86 E-value=2.4e-08 Score=60.59 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=68.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
+.+.+++.|++.+...+....++.|..|+++|++..+..+....+|..+++.+.... +|++.+++..+...+..+
T Consensus 54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 356789999999998899999999999999999999999999999999998887765 799999888776666555
Q ss_pred HHhhccc
Q psy168 77 MILFLPE 83 (130)
Q Consensus 77 ~~~~~pe 83 (130)
.+...||
T Consensus 134 ~~~~~~~ 140 (141)
T TIGR00880 134 LAFLLPE 140 (141)
T ss_pred HhhcCCC
Confidence 4444555
No 43
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.86 E-value=2.4e-08 Score=69.80 Aligned_cols=75 Identities=8% Similarity=-0.055 Sum_probs=65.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
++++|++.|++.+...+....+++|+.|+++|++..++.+.+..+|..+++.++... +||+.+++.++..++..+
T Consensus 95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 173 (365)
T TIGR00900 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISAL 173 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999887665 899999887766555444
No 44
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.86 E-value=3.4e-08 Score=70.76 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=68.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
+++.|++.|++.+...+....++.|.+|+++|.+..++.......|..+++.+.... +||+.+++.++...+..+
T Consensus 104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~ 183 (406)
T PRK15402 104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFG 183 (406)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 567899999999988888889999999999999988888777777778887775544 899999988777766555
Q ss_pred HHhhcccchh
Q psy168 77 MILFLPESPT 86 (130)
Q Consensus 77 ~~~~~pes~~ 86 (130)
.+...||+++
T Consensus 184 ~~~~~~~~~~ 193 (406)
T PRK15402 184 LWRAMPETAG 193 (406)
T ss_pred HHHhCCCCCc
Confidence 4556787754
No 45
>PTZ00207 hypothetical protein; Provisional
Probab=98.81 E-value=3.7e-08 Score=73.96 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=74.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHH-HHHhhhhh--hhHHHHHHHHHHHHHHHH-H
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALG-IFFLNAIT--DWRTTTLISSVVPILAFA-M 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~--~wr~~~~~~~~~~~~~~~-~ 77 (130)
+++.|++.|++.+...+.....+.+++| ++||+..++...+..+|..+ +++...+. +|+..|++.++.++++.+ .
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999888888899999986 78999999999999999975 44444444 888888887777776554 3
Q ss_pred Hhh--cccchhHHHhcCChHHHHHHHHHh
Q psy168 78 ILF--LPESPTWLIYKGRMVDAEKSLRWL 104 (130)
Q Consensus 78 ~~~--~pes~~~~~~~~~~~~a~~~l~~~ 104 (130)
..+ .|+.+++..++++.+++++.+++.
T Consensus 202 ~~~vr~p~~~~~~~~~~~~~~~~~~~~~~ 230 (591)
T PTZ00207 202 IVFMRLPPFHLTGYQEKHLDEEEKAQRLM 230 (591)
T ss_pred HhheeCCcchhhcccccCCCHHHHHHHhh
Confidence 333 455555555555555555554443
No 46
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.80 E-value=5.6e-08 Score=69.31 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=70.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++... +||+.+++.++...+..+
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 467899999999988888999999999999999999999988888888888776654 899999998777666554
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
.....||++
T Consensus 174 ~~~~~~~~~ 182 (392)
T PRK10473 174 SLFILKETR 182 (392)
T ss_pred HHHHcCCCC
Confidence 556677764
No 47
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.79 E-value=3.7e-08 Score=69.65 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=71.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++... +||+.|++.+++..+..+
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 467899999999998888999999999999999999999999999999998886654 899999988777766554
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
..++.||++
T Consensus 162 ~~~~~~~~~ 170 (377)
T PRK11102 162 VFFFIPETL 170 (377)
T ss_pred HHHhCCccC
Confidence 556677764
No 48
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.78 E-value=5.7e-08 Score=70.76 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=67.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHH-HHHHHhhhh----hhhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGA-LGIFFLNAI----TDWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~----~~wr~~~~~~~~~~~~~~~ 76 (130)
++++|++.|++.|...+.....+.|++|+++|++..++++.+..+|. +.+++.... .+||+.|++.+++.++..+
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46789999999998888778889999999999999999988888876 445543221 2999999998877666544
Q ss_pred -HHhhcccchhH
Q psy168 77 -MILFLPESPTW 87 (130)
Q Consensus 77 -~~~~~pes~~~ 87 (130)
..++.||+|+.
T Consensus 203 l~~~~~~~~~~~ 214 (452)
T PRK11273 203 FAFAMMRDTPQS 214 (452)
T ss_pred HHHHHccCCHhh
Confidence 66777888754
No 49
>PRK12382 putative transporter; Provisional
Probab=98.78 E-value=4.6e-08 Score=69.74 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
++++|+++|++.+...+....++.|+.|+++|++..++.+.+...|..+++.++..+ +|++.+.+..+..++....
T Consensus 115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 194 (392)
T PRK12382 115 LVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF 194 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 567899999999988888888999999999999999999999999998988886654 8998877665544433333
Q ss_pred Hhhcccc
Q psy168 78 ILFLPES 84 (130)
Q Consensus 78 ~~~~pes 84 (130)
....||.
T Consensus 195 ~~~~~~~ 201 (392)
T PRK12382 195 NGTVRKV 201 (392)
T ss_pred HHhccCC
Confidence 3334443
No 50
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.77 E-value=9.6e-08 Score=70.46 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=70.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
+.+.+++.|++.+...+....++.|++|+++|++..++.+.+..+|.++++.+...+ +||..|++.++..++..+
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l 189 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCII 189 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 456789999999988888899999999999999999999999999998888664433 899999998877776665
Q ss_pred HHhhcccchh
Q psy168 77 MILFLPESPT 86 (130)
Q Consensus 77 ~~~~~pes~~ 86 (130)
..++.||+++
T Consensus 190 ~~~~~~e~~~ 199 (491)
T PRK11010 190 ATLLAPEPTD 199 (491)
T ss_pred HHHhcCCCcc
Confidence 5556788753
No 51
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.76 E-value=9.9e-09 Score=75.01 Aligned_cols=85 Identities=14% Similarity=0.019 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------hhHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------DWRTTTLISSVVPILA 74 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~wr~~~~~~~~~~~~~ 74 (130)
+++.|++.|++.+...+....+++|++|+++||+..++++.+..+|..+++.+.... +||..|.+.+++.++.
T Consensus 125 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~ 204 (467)
T PRK09556 125 MIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALII 204 (467)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999998887765422 5888888877777665
Q ss_pred HH-HHhhcccchh
Q psy168 75 FA-MILFLPESPT 86 (130)
Q Consensus 75 ~~-~~~~~pes~~ 86 (130)
.+ .+++.+++|.
T Consensus 205 ~i~~~~~~~~~p~ 217 (467)
T PRK09556 205 GFIGLRYGSDSPE 217 (467)
T ss_pred HHHHHHhCCCChh
Confidence 54 4455566653
No 52
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.75 E-value=8.7e-09 Score=72.29 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=70.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHH-Hhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIF-FLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
++++|++.|++.+...+....+++|++|+++|++..++.+.+..+|..+++ .+.... +||+.|++.+++..+..+
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL 165 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999888 343332 899999988776666544
Q ss_pred -HHhhcccchh
Q psy168 77 -MILFLPESPT 86 (130)
Q Consensus 77 -~~~~~pes~~ 86 (130)
..++.||+|+
T Consensus 166 ~~~~~~~~~~~ 176 (379)
T TIGR00881 166 ICFLLLRDSPQ 176 (379)
T ss_pred HHheeeCCCcc
Confidence 5566677654
No 53
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.74 E-value=6.9e-08 Score=69.21 Aligned_cols=84 Identities=17% Similarity=0.074 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMIL 79 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~~ 79 (130)
++.|+++|++.+...|....++.|++|+++|++..++.+.....|.++++.+++.+ .|+..+.+.+....+..+...
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~ 171 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNL 171 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999998776 445555544433333334556
Q ss_pred hcccchh
Q psy168 80 FLPESPT 86 (130)
Q Consensus 80 ~~pes~~ 86 (130)
..||++.
T Consensus 172 ~l~~~~~ 178 (393)
T PRK11195 172 FIPRLGA 178 (393)
T ss_pred cCCCCcc
Confidence 6787653
No 54
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.73 E-value=9e-08 Score=70.05 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHH---HHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLI---SSVVPILAF 75 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~---~~~~~~~~~ 75 (130)
+.+.|++.|+++|+.. ....+++.|+|+++|+++.++...+..+|.++++++...+ +||+.+.+ ......+.+
T Consensus 118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~ 196 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSV 196 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 5789999999999999 8999999999999999999999999999999999887766 88875543 222222333
Q ss_pred HHHhhcccch
Q psy168 76 AMILFLPESP 85 (130)
Q Consensus 76 ~~~~~~pes~ 85 (130)
+.-+++|.-+
T Consensus 197 ~~a~~LP~~~ 206 (511)
T TIGR00806 197 FLALFLKRPK 206 (511)
T ss_pred HHHHhCCCCc
Confidence 3445666433
No 55
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.72 E-value=5.1e-08 Score=69.60 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=66.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
+++.|+++|++.+...+....++.|+.|+++|++..++.+.....|..+++.++... +|++.+++..+..++....
T Consensus 115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 194 (399)
T PRK05122 115 LLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL 194 (399)
T ss_pred HHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999899999999999999999998888888888888776654 8999888776655544443
Q ss_pred Hhhcccc
Q psy168 78 ILFLPES 84 (130)
Q Consensus 78 ~~~~pes 84 (130)
....|++
T Consensus 195 ~~~~~~~ 201 (399)
T PRK05122 195 ARPRPAV 201 (399)
T ss_pred HhcCCCC
Confidence 3334443
No 56
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.71 E-value=1.9e-07 Score=67.08 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-H
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-M 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~ 77 (130)
++++|++.|++.+...+....++.|+.|+++|++..++......+|..+++.++..+ +||+.|++.++..++..+ .
T Consensus 102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 567899999999888888889999999999999999999999999999998887765 899999988776665543 3
Q ss_pred Hhhccc
Q psy168 78 ILFLPE 83 (130)
Q Consensus 78 ~~~~pe 83 (130)
.++.||
T Consensus 182 ~~~~~~ 187 (400)
T PRK11646 182 AWLLPA 187 (400)
T ss_pred HHhCCc
Confidence 445565
No 57
>PRK10504 putative transporter; Provisional
Probab=98.69 E-value=9.6e-08 Score=69.68 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|+++|++.+...+....++.|++|+++|++..++......+|..+++.++..+ +||+.|++......+..+
T Consensus 101 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~ 180 (471)
T PRK10504 101 LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIA 180 (471)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999899999988887655 899999987665555444
Q ss_pred HHhhcccc
Q psy168 77 MILFLPES 84 (130)
Q Consensus 77 ~~~~~pes 84 (130)
.....|+.
T Consensus 181 ~~~~~~~~ 188 (471)
T PRK10504 181 TLMLMPNY 188 (471)
T ss_pred HHHhCCCc
Confidence 44444543
No 58
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.67 E-value=9.7e-08 Score=76.46 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=70.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
++++|+++|++.+...+....++.++.|+++|+++.++.+++..+|.++++.+++.+ +|++.|+...+..++.++.
T Consensus 111 l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 111 LFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLA 190 (1140)
T ss_pred HHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999998876 8999985555555544445
Q ss_pred Hhhcccch
Q psy168 78 ILFLPESP 85 (130)
Q Consensus 78 ~~~~pes~ 85 (130)
.+++|+++
T Consensus 191 ~~~~~~~~ 198 (1140)
T PRK06814 191 SLFIPKTG 198 (1140)
T ss_pred HhhCCCCC
Confidence 55666553
No 59
>PRK11043 putative transporter; Provisional
Probab=98.65 E-value=2.3e-07 Score=66.37 Aligned_cols=84 Identities=11% Similarity=-0.028 Sum_probs=66.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
+++.|++.|++.+...+....++.|++|+++++...+.......+|..+++.++... +||+.+++.++...+..+.
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 567899999998887777788999999999998888887777777777777776554 9999999887777776654
Q ss_pred Hhhcccch
Q psy168 78 ILFLPESP 85 (130)
Q Consensus 78 ~~~~pes~ 85 (130)
.++.+|++
T Consensus 177 ~~~~~~~~ 184 (401)
T PRK11043 177 TLRLKPSK 184 (401)
T ss_pred HHHcCCCC
Confidence 44555543
No 60
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.65 E-value=2.4e-07 Score=66.08 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=69.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
+++.|++.|++.+...+....+..|.++.++++...+..+.+..+|..+++.++... +||+.|++.++...+..+
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 567899999999887777778889999999999999999999998888888776654 899999988776665544
Q ss_pred HHhhcccchh
Q psy168 77 MILFLPESPT 86 (130)
Q Consensus 77 ~~~~~pes~~ 86 (130)
..++.||++.
T Consensus 179 ~~~~~~~~~~ 188 (394)
T PRK11652 179 MARWMPETRP 188 (394)
T ss_pred HHHhCCccCc
Confidence 5566788653
No 61
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.65 E-value=1.8e-07 Score=67.27 Aligned_cols=84 Identities=11% Similarity=-0.009 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
++++|++.|++.+...+....++.|+.|+++|++..++.+....+|..+++.++..+ +|++.+++.++..++..+.
T Consensus 113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T PRK10489 113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP 192 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 457899999998887788888999999999999999999999999999998887655 8999998887766666555
Q ss_pred Hhhcccch
Q psy168 78 ILFLPESP 85 (130)
Q Consensus 78 ~~~~pes~ 85 (130)
.+..|+++
T Consensus 193 ~~~l~~~~ 200 (417)
T PRK10489 193 LLRLPALP 200 (417)
T ss_pred HHhCCCCC
Confidence 66677754
No 62
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.64 E-value=1.8e-07 Score=72.08 Aligned_cols=84 Identities=11% Similarity=-0.024 Sum_probs=68.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~ 78 (130)
+++.+++.|++.++..+....+++|++|.+.|++..++......+|.++++.+...+ +....|++.++..++..++.
T Consensus 651 ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~ 730 (742)
T TIGR01299 651 MIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLA 730 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888999999999999999999999999999999999887654 44567777776666666666
Q ss_pred hhcccch
Q psy168 79 LFLPESP 85 (130)
Q Consensus 79 ~~~pes~ 85 (130)
.++|||.
T Consensus 731 ~~LPET~ 737 (742)
T TIGR01299 731 LKLPDTR 737 (742)
T ss_pred HhCCCCc
Confidence 6779874
No 63
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.63 E-value=1.7e-07 Score=66.04 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=64.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHH--HHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSL--TLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF 75 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~ 75 (130)
+++.|++.|.+.+...+....+..|+.|++.|+.. .+.......+|..+++.++... +||+.|++.+++.++..
T Consensus 90 l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~ 169 (375)
T TIGR00899 90 LLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCG 169 (375)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 45678999888887888888888898888777643 4666666777888887776544 89999999887766655
Q ss_pred H-HHhhcccchhH
Q psy168 76 A-MILFLPESPTW 87 (130)
Q Consensus 76 ~-~~~~~pes~~~ 87 (130)
+ .+++.||.|+.
T Consensus 170 ~~~~~~~~~~~~~ 182 (375)
T TIGR00899 170 VLVWLFLPSYPRG 182 (375)
T ss_pred HHHHHhCCCcccC
Confidence 5 45567887653
No 64
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.62 E-value=2.4e-07 Score=64.25 Aligned_cols=75 Identities=27% Similarity=0.315 Sum_probs=66.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
++++|++.|++.+...+....++.|+.|+++|++..+..+....+|..+++.+.... +||+.+++.+++.++..+
T Consensus 90 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (352)
T cd06174 90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168 (352)
T ss_pred HHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999887766 799999887766665544
No 65
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.62 E-value=1.9e-07 Score=65.46 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh-hh---hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA-IT---DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~---~wr~~~~~~~~~~~~~~~- 76 (130)
++++|++.|++.+..++....++.+++| ++|++..+....+..+|..+++.+.. .. +||+.|++.++...+..+
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 172 (377)
T TIGR00890 94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVL 172 (377)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 5679999999999888888888889887 67999999999999888876554433 32 899999998887777655
Q ss_pred HHhhcccc
Q psy168 77 MILFLPES 84 (130)
Q Consensus 77 ~~~~~pes 84 (130)
.+++.++.
T Consensus 173 ~~~~~~~~ 180 (377)
T TIGR00890 173 GAFLIGYP 180 (377)
T ss_pred HHHheecC
Confidence 44444443
No 66
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.61 E-value=2.9e-07 Score=67.62 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=56.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHH----Hhhh---------hhhhHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIF----FLNA---------ITDWRTTTLISS 68 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~----~~~~---------~~~wr~~~~~~~ 68 (130)
++++|+++|++.+... ....+++|++|+++|++..++.+....+|..+++ .+.. ..+||+.|++.+
T Consensus 127 l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 127 FIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 4678999999988653 4566889999999999999998765555554443 3321 127999999988
Q ss_pred HHHHHHHHHHhhc
Q psy168 69 VVPILAFAMILFL 81 (130)
Q Consensus 69 ~~~~~~~~~~~~~ 81 (130)
++.++..+..+++
T Consensus 206 ~l~l~~~l~~~~~ 218 (476)
T PLN00028 206 LLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHH
Confidence 8777765533333
No 67
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.59 E-value=6.9e-07 Score=64.10 Aligned_cols=84 Identities=15% Similarity=0.066 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~~ 77 (130)
++..++.+++.+...+....++.|+.|+++|++..++...+..+|.++++.+.... +||..|++.++...+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 44556677777777788889999999999999999999998888888887764432 8999999988776665555
Q ss_pred Hhhcccchh
Q psy168 78 ILFLPESPT 86 (130)
Q Consensus 78 ~~~~pes~~ 86 (130)
.++.||++.
T Consensus 178 ~~~~~e~~~ 186 (402)
T PRK11902 178 TLWAPEPEV 186 (402)
T ss_pred HHhcCCCcc
Confidence 566777653
No 68
>PRK03699 putative transporter; Provisional
Probab=98.58 E-value=5.9e-07 Score=64.28 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=61.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
++++|+++|++.|...+....++.|++|+++|+...+..+....+|..+++.+.... +||+.|.+.+++.++..+
T Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 98 FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 467899999999988888889999999999999999888888888777777664432 899999988777666544
No 69
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.53 E-value=1.1e-07 Score=68.15 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhh--hhh----hhHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLN--AIT----DWRTTTLISSVVPILAF 75 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~----~wr~~~~~~~~~~~~~~ 75 (130)
+.+.-++.|++.|.-.|.....++.|+|+++||+..++++.+..+|..+.+++. ... +||..|++.++++++..
T Consensus 120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 455678889999999999999999999999999999999999999998888776 443 89999999999888877
Q ss_pred H-HHhhcccchh
Q psy168 76 A-MILFLPESPT 86 (130)
Q Consensus 76 ~-~~~~~pes~~ 86 (130)
+ .++...++|+
T Consensus 200 l~~~~~~rd~Pq 211 (448)
T COG2271 200 LILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHhCCCcc
Confidence 6 6677777775
No 70
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.53 E-value=7.2e-07 Score=63.96 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILA 74 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~ 74 (130)
++++|+++|++.+...+....++.+++| ++|++..+.+..+...|..+++.+...+ +||+.+.+.++..++.
T Consensus 100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999987 7899999999887777777777665543 7999877665554443
No 71
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.51 E-value=1.3e-06 Score=62.39 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=65.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
+++.|++.|++.+ ..+....++.+..|+++|++..+.......+|..+++.+...+ +||+.+++.++..++..+
T Consensus 110 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 188 (408)
T PRK09874 110 FLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV 188 (408)
T ss_pred HHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 5678999999865 4566777889999999999999999999899998888887654 899999988776666544
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
..++.||.+
T Consensus 189 ~~~~~~~~~ 197 (408)
T PRK09874 189 TLFCIRENF 197 (408)
T ss_pred HHHHhccCc
Confidence 455566653
No 72
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.51 E-value=7.3e-07 Score=62.78 Aligned_cols=82 Identities=10% Similarity=0.000 Sum_probs=64.4
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h--------hHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D--------WRTTTLISSVV 70 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--------wr~~~~~~~~~ 70 (130)
.+..++.|.+.+...+....++.|+.|+++|+...++.+.+..+|.++++.+.... + ||..|++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~ 166 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL 166 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence 34556667777777777788999999999999999999999999999998886544 6 99999998887
Q ss_pred HHHHHHH-Hhhcccc
Q psy168 71 PILAFAM-ILFLPES 84 (130)
Q Consensus 71 ~~~~~~~-~~~~pes 84 (130)
.++..+. ++..||+
T Consensus 167 ~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 167 ILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHhccCC
Confidence 6665553 3345664
No 73
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.50 E-value=5.5e-07 Score=63.36 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhh----hh----------hhhHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLN----AI----------TDWRTTTLI- 66 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~----------~~wr~~~~~- 66 (130)
++++|++.|++.+ ..+....+++|++|+++|++..++...+..+|..+++.+. .. .+||+.+++
T Consensus 94 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~ 172 (366)
T TIGR00886 94 LLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV 172 (366)
T ss_pred HHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Confidence 5679999999865 4566788999999999999999998855555555544332 21 269999944
Q ss_pred HHHHHHHHH-HHHhhcccch
Q psy168 67 SSVVPILAF-AMILFLPESP 85 (130)
Q Consensus 67 ~~~~~~~~~-~~~~~~pes~ 85 (130)
.++...+.. +.+.+.+|+|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 173 PAGILLLPALLIFFVGADTP 192 (366)
T ss_pred HHHHHHHHHHHHHHhcccCC
Confidence 344433333 3445566665
No 74
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.50 E-value=8.1e-07 Score=65.65 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRI--RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSV 69 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~ 69 (130)
+++|.++|++.|...+.....++|.+|+++ |+...+.+..+..+|..+++.++..+ +||+.|++..+
T Consensus 109 ~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 109 FIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 468999999999999999999999999874 46677888888888888888776665 99999998654
No 75
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.46 E-value=7.9e-07 Score=66.88 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=51.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
++++-.+.|+|.|.... ....++|..|.|.|+....+..........+++.++..+ +|||.|++..+...+.++
T Consensus 134 ~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 46678888999887654 456689999999998777665544444333444444333 899999998777666544
No 76
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.44 E-value=9.8e-07 Score=70.62 Aligned_cols=86 Identities=13% Similarity=0.020 Sum_probs=65.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--h-----------hHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--D-----------WRTTTLISS 68 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~-----------wr~~~~~~~ 68 (130)
++++|++.|++.+...+....+++|++|+++|++..++.+.+..+|.++++.++..+ . |++.+.+..
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 185 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL 185 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence 578999999999999999999999999999999999999999999999998886654 1 334443333
Q ss_pred HHHHH-HHHHHhhcccchhH
Q psy168 69 VVPIL-AFAMILFLPESPTW 87 (130)
Q Consensus 69 ~~~~~-~~~~~~~~pes~~~ 87 (130)
+...+ .++..+..||+|..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 186 LAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred HHHHHHHHHHHhcCcCCCCC
Confidence 33332 33345567887643
No 77
>KOG2615|consensus
Probab=98.43 E-value=5e-07 Score=64.28 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhH-----HHH----HHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWR-----TTT----LISSVVPI 72 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr-----~~~----~~~~~~~~ 72 (130)
.++|++.|+.-|- ..+.-++++|+.++|+|+..++.+.+.+++|.++||.++++. .+. ..| ++..+...
T Consensus 125 v~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~ 203 (451)
T KOG2615|consen 125 VLARFLGGIFKGN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAA 203 (451)
T ss_pred HHHHHhhhhccCc-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHH
Confidence 4569999999994 577789999999999999999999999999999999998876 211 111 12223333
Q ss_pred H-HHHHHhhcccchh
Q psy168 73 L-AFAMILFLPESPT 86 (130)
Q Consensus 73 ~-~~~~~~~~pes~~ 86 (130)
. +.+..++.|||-.
T Consensus 204 ~~v~~~~~~lpETL~ 218 (451)
T KOG2615|consen 204 GDVTFFPWFLPETLP 218 (451)
T ss_pred HHHHHHHHhCCcccc
Confidence 3 3346678999843
No 78
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.43 E-value=1.8e-06 Score=62.46 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=63.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------------------
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----------------------- 58 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------------------- 58 (130)
+++.|++.|++.|...+....++.++.|+++|++..++.+.+..+|..+++.+....
T Consensus 97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (410)
T TIGR00885 97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSA 176 (410)
T ss_pred HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHH
Confidence 567899999999999999999999999999999999999999999998888774422
Q ss_pred -------hhHHHHHHHHHHHHHHHH
Q psy168 59 -------DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 59 -------~wr~~~~~~~~~~~~~~~ 76 (130)
+||+.|.+.+++.++..+
T Consensus 177 ~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 177 IKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999888776666544
No 79
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.42 E-value=1e-06 Score=63.78 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH-HHHHhHHHHHHHhhhhh----------hhHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-VSGNGGALGIFFLNAIT----------DWRTTTLISSVVP 71 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----------~wr~~~~~~~~~~ 71 (130)
++.+++.|++.+...+....+++|+.|++.|++..++.+ ...++|..+++.+++.+ +|+..|.+.++..
T Consensus 312 ~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~ 391 (418)
T TIGR00889 312 FLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYI 391 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 457889999999888888899999999999999999997 67888998888887654 3899998877776
Q ss_pred HHHHH-HHhhcccc
Q psy168 72 ILAFA-MILFLPES 84 (130)
Q Consensus 72 ~~~~~-~~~~~pes 84 (130)
++..+ .+++.+|+
T Consensus 392 ~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 392 AILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHhCCc
Confidence 66555 66666776
No 80
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.37 E-value=5.9e-07 Score=65.67 Aligned_cols=74 Identities=14% Similarity=0.059 Sum_probs=62.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAF 75 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~ 75 (130)
+++.+++.|++.+...+.....+.|..|++++++..++++....+|..+++.+.+.+ +|++.|++.++..++..
T Consensus 336 ~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 336 LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 356788999999988888889999999999999999999999999999999887754 58999988876655443
No 81
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.37 E-value=1.6e-06 Score=63.39 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=59.2
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
..|++.|++.+...+....++.++++ ++|++..++.+.+..+|..+++.+...+ +||+.|++.+++.++..+
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v 188 (455)
T TIGR00892 113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCV 188 (455)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 35789999998766777788889886 7899999999999999988888776654 899999998877665544
No 82
>PRK10133 L-fucose transporter; Provisional
Probab=98.32 E-value=4.3e-06 Score=60.96 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLN 55 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 55 (130)
++++|+++|++.|...+....++.|+.+.++|...++..+..+.+|..+++.++
T Consensus 120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988888887788899999999998888764
No 83
>KOG3764|consensus
Probab=98.32 E-value=6e-07 Score=64.20 Aligned_cols=78 Identities=21% Similarity=0.189 Sum_probs=69.4
Q ss_pred ChHHHHHHHHhhhhcccchhhhhhhhccCCcc-hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy168 1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI-RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF 75 (130)
Q Consensus 1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~ 75 (130)
+++++|.++|+|.+...+.....+++.+|.++ |++.++....+.++|.+++|.++++. |.+..|++.++..++-.
T Consensus 161 ~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~ 240 (464)
T KOG3764|consen 161 MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG 240 (464)
T ss_pred HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHH
Confidence 36789999999999999999999999999965 79999999999999999999998877 99999999988877766
Q ss_pred HHH
Q psy168 76 AMI 78 (130)
Q Consensus 76 ~~~ 78 (130)
.+-
T Consensus 241 ~L~ 243 (464)
T KOG3764|consen 241 ALQ 243 (464)
T ss_pred HHH
Confidence 533
No 84
>PRK10054 putative transporter; Provisional
Probab=98.30 E-value=3.4e-06 Score=60.57 Aligned_cols=83 Identities=7% Similarity=0.070 Sum_probs=66.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-H
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-M 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~ 77 (130)
++++|++.|.+.+...+....+.+|..|+++|++..++......+|..+++.++..+ +|+..|++.++...+..+ .
T Consensus 99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 99 VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 345788888887877788889999999999999999999999999999998887765 899999987766665543 4
Q ss_pred Hhhcccc
Q psy168 78 ILFLPES 84 (130)
Q Consensus 78 ~~~~pes 84 (130)
.++.|++
T Consensus 179 ~~~~~~~ 185 (395)
T PRK10054 179 QIWVQRS 185 (395)
T ss_pred HHHHhcc
Confidence 4445554
No 85
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.29 E-value=4.6e-06 Score=61.44 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=62.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcc---hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI---RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA 74 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~ 74 (130)
++++|++.|++.|...+....+++|++|+++ |+...+++..+..+|..+++.+...+ +|++.|++.++..++.
T Consensus 105 ~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998764 88888999999999999998887765 8999999877544443
Q ss_pred HH
Q psy168 75 FA 76 (130)
Q Consensus 75 ~~ 76 (130)
.+
T Consensus 185 ~l 186 (475)
T TIGR00924 185 LL 186 (475)
T ss_pred HH
Confidence 33
No 86
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.25 E-value=1.2e-05 Score=57.86 Aligned_cols=65 Identities=12% Similarity=-0.097 Sum_probs=51.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHH-HHHHHhhhhh----hhHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGA-LGIFFLNAIT----DWRTTTLI 66 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~----~wr~~~~~ 66 (130)
+++.|++.|++.+...+....++.+..|+++|++..++++.+..+|. .+++.++... +|+..++.
T Consensus 108 l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 108 ILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 45789999999888777777888999999999999999999988886 5677665433 65544443
No 87
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.24 E-value=8.3e-06 Score=58.29 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~ 78 (130)
++..++.|++.+...+.....+.|..|++.|++..++++....+|..+++.+.+.. +|+..+++.++..++..+..
T Consensus 306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (399)
T PRK05122 306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALT 385 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 45688999999988887778888999999999999999999888887777665544 89999988877766655543
Q ss_pred hhcc
Q psy168 79 LFLP 82 (130)
Q Consensus 79 ~~~p 82 (130)
...+
T Consensus 386 ~~~~ 389 (399)
T PRK05122 386 WLLY 389 (399)
T ss_pred HHhc
Confidence 3333
No 88
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.22 E-value=9.8e-06 Score=58.07 Aligned_cols=82 Identities=13% Similarity=0.009 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcch--hHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIR--GSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
+.+.+.|...+...+....++.++.+++.| +...+..+.+..+|..+++.++..+ +||..|+..++..++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~ 189 (393)
T PRK15011 110 FVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVM 189 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 344444444445667777888888777655 3455777888888888888887655 999999988877766655
Q ss_pred HHhhcccch
Q psy168 77 MILFLPESP 85 (130)
Q Consensus 77 ~~~~~pes~ 85 (130)
.+.+.||.+
T Consensus 190 ~~~~~~~~~ 198 (393)
T PRK15011 190 VWLFLPSMR 198 (393)
T ss_pred HHhhcCccC
Confidence 555678764
No 89
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.21 E-value=5.1e-06 Score=59.28 Aligned_cols=81 Identities=7% Similarity=-0.170 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
+++.|++.|++.+...+....++.++ .++|+...+.......+|..+++.++..+ +||..|+..++...+..+.
T Consensus 97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~ 174 (382)
T PRK11128 97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG 174 (382)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 45789999999888888877777776 34566666667777778888888887755 9999998777544444444
Q ss_pred Hhhcccc
Q psy168 78 ILFLPES 84 (130)
Q Consensus 78 ~~~~pes 84 (130)
....||.
T Consensus 175 ~~~~~~~ 181 (382)
T PRK11128 175 QLLRPTI 181 (382)
T ss_pred HHccCCC
Confidence 4445553
No 90
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.20 E-value=1.9e-05 Score=58.12 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=56.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHH----HHHHHhhh------------------hhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGA----LGIFFLNA------------------ITD 59 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~----~~~~~~~~------------------~~~ 59 (130)
+++.|++.|++ |+.++.....+++++|+++||+..++......+|. ++.+.+.. ..+
T Consensus 131 lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~ 209 (462)
T PRK15034 131 FIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS 209 (462)
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence 57889999998 77889999999999999999999999854444444 44443221 114
Q ss_pred hHHHHHHHHHHHHHHHH-HHhhccc
Q psy168 60 WRTTTLISSVVPILAFA-MILFLPE 83 (130)
Q Consensus 60 wr~~~~~~~~~~~~~~~-~~~~~pe 83 (130)
||...++...+.++..+ .+++.++
T Consensus 210 ~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 210 LANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777766666554 4444444
No 91
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.19 E-value=1.2e-05 Score=59.70 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI--RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL 73 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~ 73 (130)
++++|++.|++.|...+....+++|++|++. |+...+++..+..+|..+++.+...+ +||+.|++.++...+
T Consensus 115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 3567899999999888888899999998654 44566777888899999998887765 899999987654444
No 92
>KOG3626|consensus
Probab=98.19 E-value=1.5e-05 Score=61.03 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=72.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------------------
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----------------------- 58 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------------------- 58 (130)
++++.++.|+|..+.++....|+-|....++-+...++......+|.++|..++.+.
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 567899999999999999999999999999999999999999999999998886653
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccch
Q psy168 59 DWRTTTLISSVVPILAFAMILFLPESP 85 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~~~~~pes~ 85 (130)
.|..-|++.++..++..+.++++|...
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 577777788877777777777887664
No 93
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.18 E-value=1.6e-05 Score=55.56 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=66.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh--------------------hhhH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI--------------------TDWR 61 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--------------------~~wr 61 (130)
++++-|++|.|.+..++....|++++.+++++.+.+++.+.++++|.+++|.+... .+|+
T Consensus 13 ~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (310)
T TIGR01272 13 FLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVH 92 (310)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999988662 1588
Q ss_pred HHHHHHHHHHHHHHHHH--hhccc
Q psy168 62 TTTLISSVVPILAFAMI--LFLPE 83 (130)
Q Consensus 62 ~~~~~~~~~~~~~~~~~--~~~pe 83 (130)
+.|+..++...++.+.+ ...||
T Consensus 93 ~~yl~ia~~~~~~~i~~~~~~~p~ 116 (310)
T TIGR01272 93 TPYLLLAGALAVLAIIFAFLPLPE 116 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCC
Confidence 88886655544444433 33455
No 94
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.15 E-value=1.9e-05 Score=56.57 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~ 78 (130)
++.+++.+++.|...+....+..|..|. +|++..++++....+|..+++.+.+.+ +|+..+++..++.++..+..
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4567777777777667777888998886 589999998888888888888887765 89999988877777766665
Q ss_pred hhccc
Q psy168 79 LFLPE 83 (130)
Q Consensus 79 ~~~pe 83 (130)
++.||
T Consensus 388 ~~~~~ 392 (393)
T PRK15011 388 LRIKD 392 (393)
T ss_pred HhhcC
Confidence 55554
No 95
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.13 E-value=2.4e-05 Score=55.17 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=55.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPI 72 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~ 72 (130)
+++.|++.|++.+...+....++.|++| ++|++..+.++....+|..+++.+.... +||+.|...++...
T Consensus 90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 90 LFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4678999999999888888888899886 6899999999988888888877665433 39988877655433
No 96
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.12 E-value=4.2e-07 Score=67.85 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=3.0
Q ss_pred ChHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----------------------
Q psy168 1 MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---------------------- 58 (130)
Q Consensus 1 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---------------------- 58 (130)
+++++.++.|+|..+.+++..+|+-|..+++.-+...+++.....+|..+|.++++..
T Consensus 143 ~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp 222 (539)
T PF03137_consen 143 VFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDP 222 (539)
T ss_dssp ---------SSS--------------------------------------------------------------------
T ss_pred HHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCc
Confidence 3678999999999999999999999999999999999999999999998888776532
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHhhcccc
Q psy168 59 ----DWRTTTLISSVVPILAFAMILFLPES 84 (130)
Q Consensus 59 ----~wr~~~~~~~~~~~~~~~~~~~~pes 84 (130)
.|..-|.+.++..++..+.++++|..
T Consensus 223 ~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 223 RWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp ------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 36666666666666666666666765
No 97
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.12 E-value=1.7e-05 Score=54.92 Aligned_cols=77 Identities=23% Similarity=0.394 Sum_probs=67.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
+.+..++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+.. +|+..+++.+++.++..+.
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999887655 8999999988877776654
Q ss_pred H
Q psy168 78 I 78 (130)
Q Consensus 78 ~ 78 (130)
.
T Consensus 348 ~ 348 (352)
T cd06174 348 L 348 (352)
T ss_pred h
Confidence 3
No 98
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.07 E-value=6.4e-05 Score=54.97 Aligned_cols=68 Identities=18% Similarity=0.095 Sum_probs=50.2
Q ss_pred chhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHH-HHhhcccch
Q psy168 18 GPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA----------ITDWRTTTLISSVVPILAFA-MILFLPESP 85 (130)
Q Consensus 18 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----------~~~wr~~~~~~~~~~~~~~~-~~~~~pes~ 85 (130)
+....+++|.+|++.|++..++.+....+|..+++.+.. ..+|++.|++.++..++.++ .+++.||+.
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 567789999999999999999988888777777643322 12678888887766666555 555677763
No 99
>PRK12382 putative transporter; Provisional
Probab=98.03 E-value=4e-05 Score=54.74 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+++.++.|++.+...+.....+.|..|+++|++..++++....+|..+++.+.... +|+..|.+.++..++..+
T Consensus 306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 306 LAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGII 383 (392)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 45778889998887787778889999999999999999999999999988876655 899999988776665544
No 100
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.03 E-value=3.3e-05 Score=55.59 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=63.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH---HHHHhHHHHHHHhhhhhh---hHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG---VSGNGGALGIFFLNAITD---WRTTTLISSVVPILAF 75 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~---~~~~~g~~~~~~~~~~~~---wr~~~~~~~~~~~~~~ 75 (130)
+++++++.|++-+ .+..+..+++.++|++.+|.+.+++. ++..+...++|.+....+ |+....+......+..
T Consensus 108 ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~ 186 (417)
T COG2223 108 LLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA 186 (417)
T ss_pred HHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6788999999866 67889999999999999999999985 333344444454444446 9998888777766655
Q ss_pred H-HHhhcccchhH
Q psy168 76 A-MILFLPESPTW 87 (130)
Q Consensus 76 ~-~~~~~pes~~~ 87 (130)
+ .++...+.|..
T Consensus 187 v~~~~~~~d~p~~ 199 (417)
T COG2223 187 VLAWLGMNDVPEH 199 (417)
T ss_pred HHHHHHhCCChhh
Confidence 5 66677776654
No 101
>TIGR00898 2A0119 cation transport protein.
Probab=98.00 E-value=3e-05 Score=57.16 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=63.8
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHhhcc
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWRTTTLISSVVPILAFAMILFLP 82 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr~~~~~~~~~~~~~~~~~~~~p 82 (130)
.-++.+++.+..++....+.+|.+|.+.|++..++.+....+|.++++.+.... ++...+++.++..++..+...++|
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 495 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLP 495 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc
Confidence 345566667777788889999999999999999999999999999999887633 556677777766666666667788
Q ss_pred cch
Q psy168 83 ESP 85 (130)
Q Consensus 83 es~ 85 (130)
|+.
T Consensus 496 et~ 498 (505)
T TIGR00898 496 ETK 498 (505)
T ss_pred CCC
Confidence 874
No 102
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.96 E-value=2.5e-05 Score=55.76 Aligned_cols=67 Identities=7% Similarity=-0.191 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVV 70 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~ 70 (130)
+++.|.+.|.+.+...+....+..++ .++|++..+......++|..+++.+...+ +||..|+...+.
T Consensus 97 l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 97 LFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 45789999999888888888887664 46788888888888888999988876655 999998887654
No 103
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.96 E-value=3.3e-05 Score=54.16 Aligned_cols=70 Identities=6% Similarity=-0.049 Sum_probs=58.8
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL 73 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~ 73 (130)
+..++.|++.|...+..+.+++|..|+++|++..++.+....+|..+++.+.+.. +|++.|.+.++..++
T Consensus 300 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 300 ATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 4567888888888888888999999999999999999999999999999876654 899888887655444
No 104
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.95 E-value=6.1e-05 Score=53.71 Aligned_cols=57 Identities=19% Similarity=-0.020 Sum_probs=51.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
++++|++.|++.+...+.....+.+..++++|++..+.+..+..+|..+++.+...+
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999988888878888899999999999999999999999999887765
No 105
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.91 E-value=8e-05 Score=52.53 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~ 78 (130)
.+.+++.|++.|...+....++.|..|.+ ++...++++....+|..+++.+.+.. +|+..++..++..++..+..
T Consensus 292 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 292 LMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 45677889888888888888899988764 56889998888889999888876654 89999988887766655544
Q ss_pred hhcc
Q psy168 79 LFLP 82 (130)
Q Consensus 79 ~~~p 82 (130)
.+.+
T Consensus 371 ~~~~ 374 (375)
T TIGR00899 371 LLIK 374 (375)
T ss_pred heec
Confidence 4433
No 106
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.91 E-value=3.3e-05 Score=55.16 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=63.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+++.+++.|++.+...+.....+.+..|++.||+..+.++....+|..+++.+.+.+ +|+..|++.++..++..+
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 392 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV 392 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 356788999999998888888889999999999999999888899999998887755 899999988877666555
No 107
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.87 E-value=4.6e-05 Score=54.97 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=55.3
Q ss_pred ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHhhcccch
Q psy168 16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-MILFLPESP 85 (130)
Q Consensus 16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~~~pes~ 85 (130)
..+....+++|..|++.|++..++.+....+|..+++.+...+ +|++.|++.++.+++..+ .+++.||+.
T Consensus 400 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 400 WGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred ccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 3456667789999999999999999999999999998876654 799888888777766655 445567653
No 108
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.83 E-value=4.6e-05 Score=55.03 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+++.+++.|++.+...+....+++|..|++.|++..+. ++....+|..+++.+.+.+ ||+..|...++..++..+
T Consensus 318 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~ 397 (420)
T PRK09528 318 VSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTL 397 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 35678888888887777778899999999999877554 5677778888888776655 899999987766665444
No 109
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.79 E-value=0.0002 Score=51.73 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhh-----------hhhhHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNA-----------ITDWRTTTLISSVV 70 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-----------~~~wr~~~~~~~~~ 70 (130)
++.+++.+++.+...+....+.+|+. ++++|++..++.+.+..+|..++..+.. ..+||+.+++.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 44667777777766666667788887 5689999999887777777655543311 12799999988877
Q ss_pred HHHHHH-HHhhcccch
Q psy168 71 PILAFA-MILFLPESP 85 (130)
Q Consensus 71 ~~~~~~-~~~~~pes~ 85 (130)
.++..+ .++..+|.+
T Consensus 183 ~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 183 GVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHcCCEecC
Confidence 777655 556677764
No 110
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.77 E-value=0.00012 Score=53.97 Aligned_cols=75 Identities=13% Similarity=0.040 Sum_probs=63.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+.+..++.|+|+....|....++++..|++.||...+++..+..+|..++..+.... +|...|...++..++..+
T Consensus 384 ~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (475)
T TIGR00924 384 MVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGV 462 (475)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999999999999999998876644 677777766655555444
No 111
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.73 E-value=0.00016 Score=52.08 Aligned_cols=82 Identities=13% Similarity=-0.027 Sum_probs=61.1
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-H
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-M 77 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~ 77 (130)
.++.++.|++.+...+....++.|..|++.|++..+++.....+|..+++.+.+.+ +.+..+...++...+..+ .
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 395 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL 395 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 45677788888877777778899999999999999999888888888888887665 566666665554444433 4
Q ss_pred Hhhcccc
Q psy168 78 ILFLPES 84 (130)
Q Consensus 78 ~~~~pes 84 (130)
....++.
T Consensus 396 ~~~~~~~ 402 (417)
T PRK10489 396 LLVLGEL 402 (417)
T ss_pred HHhcccc
Confidence 4555654
No 112
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.72 E-value=0.00021 Score=51.22 Aligned_cols=73 Identities=14% Similarity=-0.021 Sum_probs=55.9
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
+.-++.|++.++..+....++.|..|++.|++..++.+....+|..+++.+.+.+ +|...++......+...+
T Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK11551 313 LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAAL 390 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence 4456677777777788888999999999999999999999999999999887765 455556555444444333
No 113
>PRK09952 shikimate transporter; Provisional
Probab=97.71 E-value=0.00029 Score=51.33 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=55.7
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHH-HHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLS-GVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~~~~ 77 (130)
+-++.|++.+...+....+++|.+|.+.|++..++. +.+..+|..++|.+...+ +|+..+....+..++..+.
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~ 428 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT 428 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 345557777777777888999999999999888874 454556766676665443 4777777776666665555
Q ss_pred Hhhcccc
Q psy168 78 ILFLPES 84 (130)
Q Consensus 78 ~~~~pes 84 (130)
.+..+|+
T Consensus 429 ~~~~~~~ 435 (438)
T PRK09952 429 ALLMKDN 435 (438)
T ss_pred HHHcccc
Confidence 5555654
No 114
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.70 E-value=0.00037 Score=50.98 Aligned_cols=71 Identities=18% Similarity=0.088 Sum_probs=46.7
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHH-HHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGAL-GIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
-++.|.+..+.......+..|..|++.||+..++.+....+|.. .++.+.+.. +|+..|++.++.+++..+
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~ 429 (452)
T PRK11273 354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 429 (452)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33444433322233345677999999999999998777666644 456554433 899999887776666554
No 115
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.70 E-value=0.00021 Score=53.17 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=49.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
+....++.|++++...|+...++.+..|++.||..++.+.+...+|..++..+..
T Consensus 385 ~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 385 LIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999888888888766653
No 116
>KOG2325|consensus
Probab=97.68 E-value=0.00012 Score=54.08 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=61.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------h-----------hHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------D-----------WRTTT 64 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~-----------wr~~~ 64 (130)
++++|++.|+|.|. ....=.|+++.+..+.|.++.+....+..+|..+||.++..+ | +...-
T Consensus 133 mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~ 211 (488)
T KOG2325|consen 133 MLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPA 211 (488)
T ss_pred HHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHH
Confidence 68899999999985 456678999999999999999998888888888888775544 1 22344
Q ss_pred HHHHHHHHHHHH-HHhhcccchh
Q psy168 65 LISSVVPILAFA-MILFLPESPT 86 (130)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~pes~~ 86 (130)
|+.++..++..+ ..+++.|..+
T Consensus 212 w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 212 WLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHHHHHHHHHhheeeccc
Confidence 566666666555 5566666543
No 117
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.66 E-value=0.00038 Score=48.92 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=52.6
Q ss_pred hhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h-hHHHHHHHHHHHHHHHH
Q psy168 13 MGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D-WRTTTLISSVVPILAFA 76 (130)
Q Consensus 13 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-wr~~~~~~~~~~~~~~~ 76 (130)
..+..+....+++|..|++.|++..++.+....+|..+++.+.+.+ + |+..+++.++..++..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 393 (399)
T TIGR00893 325 GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGAL 393 (399)
T ss_pred chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHH
Confidence 3336788889999999999999999999999999999998887655 5 99888887766665544
No 118
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.64 E-value=0.00041 Score=49.47 Aligned_cols=73 Identities=15% Similarity=-0.030 Sum_probs=58.1
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
.+.++.|++.+...+....++.|..|+++++...+.++....+|..+++.+.+.. +|++.|.+.+...+....
T Consensus 290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 290 PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 4567788877777888888899999998888888888888889999999887765 788888887766655444
No 119
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.62 E-value=0.00042 Score=51.56 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=50.7
Q ss_pred HHHhhhhcccchhhhhhhhccCCc--chhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHH
Q psy168 8 MLGAGMGFCEGPIMSYLGEVCEPR--IRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPI 72 (130)
Q Consensus 8 l~G~~~g~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~ 72 (130)
+.+++.|...+....+++|.+|++ +|....+++.....+|..+++.+...+ +|++.|.+.++..+
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~ 179 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 444566666676778999999986 788888888888888999998887765 89999998665333
No 120
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.48 E-value=0.00082 Score=48.15 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=51.4
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-HHh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-MIL 79 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~~~ 79 (130)
+.|++.|++.+...+....++.+..+. ++...+.......+|..+++.++... +||+.|++.++..++..+ .+.
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 104 VGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777665433 23333444555566777777665544 999999998877777655 333
Q ss_pred hcccch
Q psy168 80 FLPESP 85 (130)
Q Consensus 80 ~~pes~ 85 (130)
..||+|
T Consensus 182 ~~~~~~ 187 (396)
T TIGR00882 182 AKPKAP 187 (396)
T ss_pred hCCCCc
Confidence 345543
No 121
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.46 E-value=0.0012 Score=49.01 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=51.1
Q ss_pred ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-h-------------hHHHHHHHHHHHHHHHHHHhhc
Q psy168 16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-D-------------WRTTTLISSVVPILAFAMILFL 81 (130)
Q Consensus 16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~-------------wr~~~~~~~~~~~~~~~~~~~~ 81 (130)
..++...+.+|.+|.+.|++..++.+....+|.++++.+.... + +...+++.++..++..+..+++
T Consensus 409 ~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~l 488 (502)
T TIGR00887 409 PNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLI 488 (502)
T ss_pred CCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEe
Confidence 3456667889999999999999999988888888887664433 1 2445666666666555555677
Q ss_pred ccch
Q psy168 82 PESP 85 (130)
Q Consensus 82 pes~ 85 (130)
||+.
T Consensus 489 pEt~ 492 (502)
T TIGR00887 489 PETK 492 (502)
T ss_pred ccCC
Confidence 9974
No 122
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.46 E-value=0.0019 Score=46.16 Aligned_cols=71 Identities=14% Similarity=0.040 Sum_probs=48.2
Q ss_pred hhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHhhcc
Q psy168 12 GMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI----TDWRTTTLISSVVPILAFAMILFLP 82 (130)
Q Consensus 12 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~wr~~~~~~~~~~~~~~~~~~~~p 82 (130)
..+..-+..-.+..|..+.++++...+....+..+|..++...... .+||..|++.++...+..+...+.+
T Consensus 110 ~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 110 ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333334444466777888888888777777778888888755433 3999999999887776555333443
No 123
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.45 E-value=0.00062 Score=49.54 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=47.3
Q ss_pred hhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 19 PIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 19 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
....+++|..|++.|++..++.+....+|..+++.+.+.+ +|+..|+..++..++..+
T Consensus 357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~ 418 (434)
T PRK11663 357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISAL 418 (434)
T ss_pred HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3345678999999999999999999999999998776655 799998887777666554
No 124
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.36 E-value=0.0016 Score=47.26 Aligned_cols=71 Identities=17% Similarity=0.331 Sum_probs=54.7
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHH-HHHhHHHHHHHhhhhh----------hhHHHHHHHHHHHHHH
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGV-SGNGGALGIFFLNAIT----------DWRTTTLISSVVPILA 74 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~----------~wr~~~~~~~~~~~~~ 74 (130)
-.+.|+..|.....+..|+.+..|++.|++..+++.. ..++|..++..+++.+ +|...+.+.++...+.
T Consensus 308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~ 387 (400)
T PF03825_consen 308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVI 387 (400)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 3457898998999999999999999999999999755 5678888888887765 4555555565555554
Q ss_pred HH
Q psy168 75 FA 76 (130)
Q Consensus 75 ~~ 76 (130)
.+
T Consensus 388 ~~ 389 (400)
T PF03825_consen 388 LV 389 (400)
T ss_pred HH
Confidence 44
No 125
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.35 E-value=0.0011 Score=48.73 Aligned_cols=74 Identities=15% Similarity=-0.046 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHh-HHHHHHHhhhh----------------hhhHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG-GALGIFFLNAI----------------TDWRTTTL 65 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~----------------~~wr~~~~ 65 (130)
.+++++.|++..+........+.|..|++.||+..++.+....+ |..+++.+.+. .+|+..|+
T Consensus 353 ~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~ 432 (467)
T PRK09556 353 LASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFA 432 (467)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHH
Confidence 35667777654433333346777999999999999999777664 54554443221 25898888
Q ss_pred HHHHHHHHHHH
Q psy168 66 ISSVVPILAFA 76 (130)
Q Consensus 66 ~~~~~~~~~~~ 76 (130)
+..+..++..+
T Consensus 433 ~~~~~~~~~~~ 443 (467)
T PRK09556 433 ALDIAAIGCIC 443 (467)
T ss_pred HHHHHHHHHHH
Confidence 77555555443
No 126
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.30 E-value=0.0017 Score=46.61 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=59.1
Q ss_pred HHHHhhhhcccchhhhhhhhccC-CcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH-HHh
Q psy168 7 IMLGAGMGFCEGPIMSYLGEVCE-PRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA-MIL 79 (130)
Q Consensus 7 ~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~-~~~ 79 (130)
++.|++.+...+.......+..+ ++++++..++.+....++..+++.+.+.. +|...+++.++...+..+ ...
T Consensus 300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 46678888777776666666664 67899999998888888888888776655 477888887766666555 567
Q ss_pred hcccch
Q psy168 80 FLPESP 85 (130)
Q Consensus 80 ~~pes~ 85 (130)
+.||++
T Consensus 380 ~~~~~~ 385 (393)
T PRK09705 380 FAPARF 385 (393)
T ss_pred hccccc
Confidence 778875
No 127
>PRK03545 putative arabinose transporter; Provisional
Probab=97.22 E-value=0.0047 Score=44.20 Aligned_cols=73 Identities=10% Similarity=-0.017 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
.++-++.|++.+...+....++.+..| +.|++..+++.....+|..+|+.+.+.. +++..+++.++..++..+
T Consensus 298 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 298 SVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 345667788877666666777788766 6889999988888888888888886655 889999888766665444
No 128
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.19 E-value=0.00054 Score=48.29 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----h-hHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----D-WRTTTLISSVV 70 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~-wr~~~~~~~~~ 70 (130)
++..++.|++.+...+....+++|..|++.|++..++ ++....+|..+++.+.+.. + |++.++...+.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 3456778888888888889999999999999998887 4666677777777776554 4 77776665543
No 129
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.16 E-value=0.0024 Score=51.65 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH-
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~- 76 (130)
+++-++.|++.+...+....++.+..|++.||+..++.+....+|..+++.++... ++...+++.+.+.++..+
T Consensus 326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1146)
T PRK08633 326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLY 405 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 45678889999888888889999999999999999999888888887766665543 344555554444333322
Q ss_pred HHhhcccc
Q psy168 77 MILFLPES 84 (130)
Q Consensus 77 ~~~~~pes 84 (130)
.....|++
T Consensus 406 ~~~~~~~~ 413 (1146)
T PRK08633 406 TLLLLPDS 413 (1146)
T ss_pred HHHHhHHH
Confidence 33334443
No 130
>KOG0569|consensus
Probab=97.12 E-value=0.011 Score=44.03 Aligned_cols=75 Identities=9% Similarity=-0.003 Sum_probs=51.8
Q ss_pred HHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhH-HHHHHHHHHHHHHHH-HHhhcccc
Q psy168 9 LGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWR-TTTLISSVVPILAFA-MILFLPES 84 (130)
Q Consensus 9 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr-~~~~~~~~~~~~~~~-~~~~~pes 84 (130)
.+++.| ..|+.+.+.+|.+|.+.|..+.++.....-++.++....-..+ .|- +.|++..+++.+..+ .++.+|||
T Consensus 379 ~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 379 ISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCccc
Confidence 344445 4678888999999999999999987666555555443332222 121 666677777777666 88999998
No 131
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.09 E-value=0.0054 Score=44.18 Aligned_cols=71 Identities=10% Similarity=-0.002 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+..++.|++.+...+. ...++|..| ++|++..++.+....+|..++|.+.... +|...+++.++...+..+
T Consensus 321 ~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~ 395 (402)
T TIGR00897 321 IIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAF 395 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 4567778777765443 455677655 5899999999999999999999876655 888888887766655444
No 132
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.09 E-value=0.0034 Score=46.62 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=55.0
Q ss_pred hhhcccchhhhhhhhccCCcch--hHHHHHHHHHHHhHHHHHHHhhhhh-------------------hhHHHHHHHHHH
Q psy168 12 GMGFCEGPIMSYLGEVCEPRIR--GSLTLLSGVSGNGGALGIFFLNAIT-------------------DWRTTTLISSVV 70 (130)
Q Consensus 12 ~~g~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~-------------------~wr~~~~~~~~~ 70 (130)
+.....+..-++++|..|+++| +.+.++.+.+..+|.++++.++++. +.|..|++.++.
T Consensus 127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~ 206 (477)
T TIGR01301 127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL 206 (477)
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence 5666666677899999999866 5688888888888998888876543 456778887766
Q ss_pred HHHHHH-HHhhcccch
Q psy168 71 PILAFA-MILFLPESP 85 (130)
Q Consensus 71 ~~~~~~-~~~~~pes~ 85 (130)
.++... ..+..+|.|
T Consensus 207 l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 207 LAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHeeeeeccC
Confidence 666544 667778876
No 133
>KOG2504|consensus
Probab=97.08 E-value=0.0007 Score=50.58 Aligned_cols=79 Identities=22% Similarity=0.206 Sum_probs=62.9
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-MIL 79 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~ 79 (130)
.=++.|+|.|..+..+.+.+. .+..++|+.+.++...+.++|.++-+.+...+ |||+.+++.+.+.+...+ ...
T Consensus 141 ~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~ 219 (509)
T KOG2504|consen 141 FGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGAL 219 (509)
T ss_pred HHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 346788999988888878888 57888999999999999999999888887766 999999987776666554 555
Q ss_pred hcccc
Q psy168 80 FLPES 84 (130)
Q Consensus 80 ~~pes 84 (130)
..|.+
T Consensus 220 ~rp~~ 224 (509)
T KOG2504|consen 220 LRPLS 224 (509)
T ss_pred cCCCC
Confidence 55533
No 134
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.08 E-value=0.0024 Score=47.05 Aligned_cols=64 Identities=16% Similarity=-0.002 Sum_probs=47.3
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHH
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSV 69 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~ 69 (130)
.++.|....+..+..+.+++|.+|++.|++..++++....+|..+++.+.+.+ +|+..+...+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 33333333334556677889999999999999999888889999998887765 77777655443
No 135
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.07 E-value=0.0011 Score=48.22 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=44.6
Q ss_pred hhhhhccCCcchhHHHHHHHHHHHhH-HHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHhhcccc
Q psy168 22 SYLGEVCEPRIRGSLTLLSGVSGNGG-ALGIFFLNAIT----DWRTTTLISSVVPILAFA-MILFLPES 84 (130)
Q Consensus 22 ~~~~e~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~~~pes 84 (130)
....|.+|++.|+...++.+....+| ..+++.+.+.. +|...+++..+..++..+ .+..+||.
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45679999999999999987766655 45676665543 788888876665555444 55666664
No 136
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.05 E-value=0.0014 Score=48.43 Aligned_cols=80 Identities=14% Similarity=-0.007 Sum_probs=58.4
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHH---HhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSG---NGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~---~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+..++.+++.+..-..+-.++.|..+ +++....+.....+ ..|.++++.+++.. +|+..|++.++...+..+
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF 203 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 36788899988888888899999988 55554443433333 36777777776654 899999998877777755
Q ss_pred HHhhcccc
Q psy168 77 MILFLPES 84 (130)
Q Consensus 77 ~~~~~pes 84 (130)
...+.+|.
T Consensus 204 ~~~~~~E~ 211 (468)
T TIGR00788 204 VSNLSKER 211 (468)
T ss_pred HHHhcccc
Confidence 66777875
No 137
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.03 E-value=0.0023 Score=46.13 Aligned_cols=55 Identities=15% Similarity=0.022 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
+..++.|++.+...+....++.+..|++.||+..++++....+|..+++.+.+..
T Consensus 302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 3456677888777788888999999999999999999999999999999887765
No 138
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.03 E-value=0.0047 Score=45.91 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=64.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
+.+.=++.|++.|+.++.+=++.+|+.|+++.+..-+++.+..-.+..+||.+-+.+ +-|+.+....++.++.++
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ 462 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLI 462 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999999999999999999886655 466766666555555555
Q ss_pred HHhhccc
Q psy168 77 MILFLPE 83 (130)
Q Consensus 77 ~~~~~pe 83 (130)
++..++.
T Consensus 463 ll~~v~~ 469 (477)
T PF11700_consen 463 LLFFVDV 469 (477)
T ss_pred HHhhccc
Confidence 4444443
No 139
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.00 E-value=0.0022 Score=45.52 Aligned_cols=55 Identities=20% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
++.++.|++.++..+....+++|..|++.|++..++.+....+|..+++.+.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 387 (405)
T TIGR00891 333 LGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL 387 (405)
T ss_pred HHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777778888999999999999999999888899999999887766
No 140
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.98 E-value=0.006 Score=43.64 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=54.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH-HHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-VSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL 73 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~ 73 (130)
+++.+++.|+..|...+....++++. |++.|++..++++ ...++|..+++.+++.+ ++ ..|...++..++
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAA 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 45678999999999999999999998 9999999999875 56788888888887766 44 344554444443
No 141
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.98 E-value=0.0043 Score=44.45 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=51.9
Q ss_pred HHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHH
Q psy168 7 IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 7 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr~~~~~~~~~~~~~~~~ 77 (130)
++.|++.....+....+.+|.+|++.|++..++.+....+|..+++.+.... +-+..|.+.+++.++..+.
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAI 360 (368)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4556666666666778999999999999999999998888887777665433 5556666666665555443
No 142
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.97 E-value=0.0037 Score=50.77 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVV 70 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~ 70 (130)
+++-++.|++.+...+...+++.+..|++.||+..+..++...+|..+++.+...+ +....+++.++.
T Consensus 338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34567889999988888899999999999999999999999998888888775544 455555544433
No 143
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=96.96 E-value=0.0011 Score=46.54 Aligned_cols=55 Identities=13% Similarity=-0.056 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
+.-++.|+...+..+....+++|..|++.|++..++.+....+|..+++.+.+.+
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 369 (379)
T TIGR00881 315 ICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL 369 (379)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 3445666655555566667889999999999999999999999998888776554
No 144
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.0067 Score=43.96 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
++++-|+.|.|.|...+.+..|++...++++-...+++.|.+.++|.+++|.++...
T Consensus 107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 107 FLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999886543
No 145
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.90 E-value=0.014 Score=42.30 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
++-.+.|++.+...+...+.++|..|+++|++..++.-++...|.+++.+..+..
T Consensus 94 l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 94 LAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred HHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999999999999998876644
No 146
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.82 E-value=0.0096 Score=44.80 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+++.-++.|++.+...|.-.+.+.|+.|+++...+.++.++...++.++||.+++.+ |-.+.|.+.++..++..+
T Consensus 106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 106 LLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999998888888888888887765 667788777654444433
No 147
>PRK10504 putative transporter; Provisional
Probab=96.81 E-value=0.0067 Score=44.45 Aligned_cols=54 Identities=6% Similarity=-0.197 Sum_probs=45.2
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
.-++.|++.+...+.....+.+..|++.++...++.+....+|..+++.+.+..
T Consensus 359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888877788888889999999999999999999999988888776544
No 148
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.79 E-value=0.009 Score=44.20 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=45.0
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
-++.+++.+........++++..|++.+|+..++++....+|..+++.++..+
T Consensus 358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777778889999999999999999999999999999998776655
No 149
>TIGR00895 2A0115 benzoate transport.
Probab=96.77 E-value=0.0026 Score=44.94 Aligned_cols=55 Identities=16% Similarity=-0.004 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI 57 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 57 (130)
++..++.|++.+...+....+++|..|++.|++..++.+....+|..+++.+.+.
T Consensus 342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4567888999998899999999999999999999999999999999999877553
No 150
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=96.76 E-value=0.0031 Score=44.00 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI 57 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 57 (130)
++++.++.|++.+...+....++.|..|++.|++..++.+....+|..+++.+.+.
T Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~ 359 (365)
T TIGR00900 304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP 359 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999998888889999999999999999999999999999988877554
No 151
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.76 E-value=0.01 Score=44.13 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=52.1
Q ss_pred hhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHhhcccc
Q psy168 13 MGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMILFLPES 84 (130)
Q Consensus 13 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~~~~pes 84 (130)
.|...+....+..+..+++.+++..++.+....+|..+++.+.+.+ ||+..|.+.++.+++..+.....+++
T Consensus 330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3434455567778899999999999999888888877666565544 89999988887777766544444443
No 152
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.70 E-value=0.022 Score=41.18 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccC-------CcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCE-------PRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
++..++.|++.+...+.....++|..+ ++.+|...++++.+..+|..+++.+.+..
T Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 315 LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888765 55678889998888888888887765543
No 153
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=96.70 E-value=0.014 Score=38.97 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=55.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCC-cchhHHHHHHHH-HHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGV-SGNGGALGIFFLNAIT------DWRTTTLISSVVPIL 73 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~ 73 (130)
+++.|++.|++.|...+....+++|+.|. +.|+...+.... ....|..+++.++... +||+.+.........
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 46789999999999999999999999998 778888888777 5777777777554433 688866666554433
No 154
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.68 E-value=0.019 Score=41.05 Aligned_cols=79 Identities=19% Similarity=0.129 Sum_probs=61.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcc---hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI---RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA 74 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~ 74 (130)
++++-++.++|.|+.=+....+.+|.++++. |...-+.+..+..+|.+++..+..++ +|.+.|.+.++..++.
T Consensus 36 ~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~ 115 (372)
T PF00854_consen 36 FYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLA 115 (372)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHH
Confidence 5677889999999999999999999998864 44444557888888999998776666 7999999887766665
Q ss_pred HHHHhh
Q psy168 75 FAMILF 80 (130)
Q Consensus 75 ~~~~~~ 80 (130)
.+.+..
T Consensus 116 ~~~f~~ 121 (372)
T PF00854_consen 116 LIVFLS 121 (372)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 554433
No 155
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.018 Score=41.42 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
++.+-.+.|.+.+......+..+-+.+|++. +..+++|..+.+.|..+++.+...+ +||....+=+.++++.++
T Consensus 102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~ 180 (395)
T COG2807 102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALL 180 (395)
T ss_pred HHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999888765 6788899888888887777665444 799999888888777666
Q ss_pred HHhh
Q psy168 77 MILF 80 (130)
Q Consensus 77 ~~~~ 80 (130)
.++.
T Consensus 181 ~WlP 184 (395)
T COG2807 181 IWLP 184 (395)
T ss_pred HHhh
Confidence 5443
No 156
>PRK03699 putative transporter; Provisional
Probab=96.64 E-value=0.0093 Score=42.80 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMIL 79 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~~ 79 (130)
+.-++.|++.+..++....+..|..|.+ ++...+....+..+|..+++.+.+.+ +|+..++..++...+..+...
T Consensus 299 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 299 YAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 4567788888877787777888877644 56677777777888888888776655 888888877766666555444
Q ss_pred hccc
Q psy168 80 FLPE 83 (130)
Q Consensus 80 ~~pe 83 (130)
..+.
T Consensus 378 ~~~~ 381 (394)
T PRK03699 378 LLGF 381 (394)
T ss_pred HHHH
Confidence 4443
No 157
>PRK10054 putative transporter; Provisional
Probab=96.64 E-value=0.013 Score=42.22 Aligned_cols=81 Identities=11% Similarity=0.061 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-H
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-M 77 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~ 77 (130)
+++.++.|++.+...+....++.+..|++.|++..+..+ ...+|..+++.+.+.+ +-...|++.++...+... .
T Consensus 302 ~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 302 GMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 456778888888777888889999999999998877654 3446777887776655 555566655444444333 3
Q ss_pred Hhhcccc
Q psy168 78 ILFLPES 84 (130)
Q Consensus 78 ~~~~pes 84 (130)
..-..|.
T Consensus 381 ~~~~~~~ 387 (395)
T PRK10054 381 LKGMRAR 387 (395)
T ss_pred HhccccC
Confidence 3334443
No 158
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.60 E-value=0.016 Score=43.58 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL 73 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~ 73 (130)
+++-++.|++.....+...+.+.+..|++.||+..+++++....+..+|..+.+.+ +-+..+.+.++..++
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll 385 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL 385 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 44667888888887777788889999999999999999998888888888876665 666666665544333
No 159
>PRK12307 putative sialic acid transporter; Provisional
Probab=96.59 E-value=0.014 Score=42.13 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=35.2
Q ss_pred cchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 17 EGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 17 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
.+..+.++.|.+|++.|++..++.+....+|..+++.+.+.+
T Consensus 339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 345567889999999999999998888888888888886655
No 160
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.57 E-value=0.021 Score=40.83 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=49.0
Q ss_pred HHhhhhcccchhhhhhhhccCC-cchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy168 9 LGAGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA 74 (130)
Q Consensus 9 ~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~ 74 (130)
.+++.|...+.....+.+..++ +.+++..++.+....+|..+++.+.+.+ +|+..|+..++..++.
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 313 GSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3444555556666666666666 8999999999999999999999887765 7778887776555443
No 161
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.54 E-value=0.011 Score=42.58 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy168 7 IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 7 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~ 78 (130)
+..|++.+...+....++.+..|.+.++...+....+...+..++..+....||+..|.+.++.+.+.++..
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 315 LCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 455666777777777888888887776554444333332232233333333499999999887776655544
No 162
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.53 E-value=0.0079 Score=43.48 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHh-hcccc
Q psy168 31 RIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMIL-FLPES 84 (130)
Q Consensus 31 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~~-~~pes 84 (130)
+++++..+..+....+|..+++.++..+ +|++.|+..++..++..+..+ ..+|.
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 3455566666666777777777776655 899999988877766555333 34443
No 163
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.44 E-value=0.015 Score=42.25 Aligned_cols=81 Identities=22% Similarity=0.317 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccC-CcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------hhHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCE-PRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------DWRTTTLISSVV 70 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~wr~~~~~~~~~ 70 (130)
.+.-++..++.........++.+|+.+ .++|.+..+.-+.+..+|.++...+...+ +|++..++.+++
T Consensus 107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv 186 (428)
T PF13347_consen 107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIV 186 (428)
T ss_pred HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHH
Confidence 345556677777777777788899987 47999999988887777776444432221 589888888777
Q ss_pred HHHHHH-HHhhccc
Q psy168 71 PILAFA-MILFLPE 83 (130)
Q Consensus 71 ~~~~~~-~~~~~pe 83 (130)
..+... ..+..+|
T Consensus 187 ~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 187 GLVFFLITFFFVKE 200 (428)
T ss_pred HHHHhhhhhheeee
Confidence 777655 6666777
No 164
>KOG0252|consensus
Probab=96.30 E-value=0.0063 Score=45.00 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=56.0
Q ss_pred ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHHHHhhcccch
Q psy168 16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---------DWRTTTLISSVVPILAFAMILFLPESP 85 (130)
Q Consensus 16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---------~wr~~~~~~~~~~~~~~~~~~~~pes~ 85 (130)
...+..++-+|.+|.+.|+++-++...+-.+|.+++...-... +-|..+++.+...+...+..+++|||.
T Consensus 423 Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 423 PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 3455567779999999999999999999999998887653322 678899988887777777777889984
No 165
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.29 E-value=0.025 Score=42.21 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
...-++.|+|++...++...++.+..|++.++..++++++...+|..++..++.
T Consensus 383 i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 383 VLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999988887753
No 166
>KOG2816|consensus
Probab=96.22 E-value=0.018 Score=42.67 Aligned_cols=73 Identities=23% Similarity=0.190 Sum_probs=58.9
Q ss_pred hhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHhhcccch
Q psy168 13 MGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-MILFLPESP 85 (130)
Q Consensus 13 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~~~pes~ 85 (130)
.+........|++|+...++|....++....+..+..+++.++... +.-..+.+.++..+...+ ...++||+-
T Consensus 126 ~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 126 FSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred hhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3445667788999999999999999999999999999999988876 555667777766666655 778889874
No 167
>PRK09669 putative symporter YagG; Provisional
Probab=96.20 E-value=0.05 Score=39.77 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=47.5
Q ss_pred HHHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhh-----h------hhhHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNA-----I------TDWRTTTLISSVVPI 72 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-----~------~~wr~~~~~~~~~~~ 72 (130)
..++.+.+.........++.+|+. ++++|++..+.-..+..+|..+++.+.. . .+|+..+.+.+++..
T Consensus 115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~ 194 (444)
T PRK09669 115 TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGV 194 (444)
T ss_pred HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 334445455445555557788887 5588998877776666666555543321 1 168877777776665
Q ss_pred HHHH-HHhhccc
Q psy168 73 LAFA-MILFLPE 83 (130)
Q Consensus 73 ~~~~-~~~~~pe 83 (130)
+..+ .++..+|
T Consensus 195 v~~~~~~~~~~e 206 (444)
T PRK09669 195 VLFFCCFFMTKE 206 (444)
T ss_pred HHHHHHhCCeEE
Confidence 5544 4444454
No 168
>KOG0253|consensus
Probab=96.19 E-value=0.0076 Score=43.71 Aligned_cols=76 Identities=14% Similarity=0.034 Sum_probs=54.3
Q ss_pred HHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHhhcc
Q psy168 7 IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWRTTTLISSVVPILAFAMILFLP 82 (130)
Q Consensus 7 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr~~~~~~~~~~~~~~~~~~~~p 82 (130)
|..-++.++.+.+.++|..|++|.+.|+++.|....+.-+|.++.|.++--. +-.....+.....++..++..++|
T Consensus 442 f~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 442 FTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred HHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeee
Confidence 3344556777888899999999999999999999999999999999876222 222334444445555555555555
No 169
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.12 E-value=0.017 Score=41.38 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
++.+++.|++.+........++.+..+.+.+++..+. ++....+|..+++.+.+.+ ||+..|.+.++...+..+
T Consensus 311 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 311 VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4567788887766655666677888888888876655 5777888888888776655 888888887766655433
No 170
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.07 E-value=0.031 Score=41.67 Aligned_cols=82 Identities=7% Similarity=-0.021 Sum_probs=63.6
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCC--cchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEP--RIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILAF 75 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~~ 75 (130)
+.-.+.|+.-+..+.+.+..+++..++ +..|..+++++.+.++..++..+..+.+ +-...+.+.++..++..
T Consensus 385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa 464 (477)
T TIGR01301 385 IVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSG 464 (477)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHH
Confidence 445678999999999999999999995 4559999999999999999888665543 44567777777777766
Q ss_pred H-HHhhcccch
Q psy168 76 A-MILFLPESP 85 (130)
Q Consensus 76 ~-~~~~~pes~ 85 (130)
+ .++.+|..+
T Consensus 465 ~~~~~~~~~~~ 475 (477)
T TIGR01301 465 LLALILLPRPR 475 (477)
T ss_pred HHHHHhCCCCC
Confidence 5 666677653
No 171
>PRK09848 glucuronide transporter; Provisional
Probab=96.07 E-value=0.087 Score=38.53 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCc-------chhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPR-------IRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
++..++.|+|.+...+......+|..+.+ .+|...++++.+..+|..+++.+..
T Consensus 323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999888888888887754 4588888888888888888776644
No 172
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.01 E-value=0.044 Score=39.93 Aligned_cols=64 Identities=11% Similarity=-0.044 Sum_probs=36.5
Q ss_pred cchhhhhhhhccCCcchhHHHHHHHHH-HHhHHHHHHHhhhhh---h-hHHHHHHHHHHHHHHHHHHhh
Q psy168 17 EGPIMSYLGEVCEPRIRGSLTLLSGVS-GNGGALGIFFLNAIT---D-WRTTTLISSVVPILAFAMILF 80 (130)
Q Consensus 17 ~~~~~~~~~e~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~---~-wr~~~~~~~~~~~~~~~~~~~ 80 (130)
.+....+++|++|++.|++..++.+.. ..+.....+.+.... + |...++..++..++..+..++
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999986543 322222244433333 3 555555554444444443333
No 173
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=95.98 E-value=0.084 Score=38.07 Aligned_cols=70 Identities=6% Similarity=-0.043 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL 73 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~ 73 (130)
.+.-++.|++.+...+....++.+..| ++++...+.......+|..+|+.+++.. +++..++..++...+
T Consensus 309 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 309 TGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 345678888888888888888888887 4566777777777788888888776665 677777776554433
No 174
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=95.97 E-value=0.014 Score=40.64 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIF 52 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~ 52 (130)
++.-++.|++.+...+....++.|..|+++||+..++.+....+|..++|
T Consensus 303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34567889999999999999999999999999999999999999998886
No 175
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.82 E-value=0.0017 Score=47.21 Aligned_cols=69 Identities=26% Similarity=0.222 Sum_probs=46.8
Q ss_pred ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH-HHHHhhcccc
Q psy168 16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA-FAMILFLPES 84 (130)
Q Consensus 16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~-~~~~~~~pes 84 (130)
..+....+.+|.+|.+.|+++.++......++..+++.+.... +-...+.+.++...+. .+.+++.|||
T Consensus 366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 3456668889999999999999998777777777666654443 2023344444444444 4477889998
No 176
>KOG2504|consensus
Probab=95.74 E-value=0.0085 Score=44.93 Aligned_cols=80 Identities=14% Similarity=0.080 Sum_probs=67.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~~ 77 (130)
++.-.+.|++.|.........+.|..+.++-..+.++...+.+++.++++.+.+.+ +|...|+..++..++..+.
T Consensus 392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 44557888999988888888999999999999999999999999999999987766 6889999888777776665
Q ss_pred Hhhcc
Q psy168 78 ILFLP 82 (130)
Q Consensus 78 ~~~~p 82 (130)
++..|
T Consensus 472 ~~~~~ 476 (509)
T KOG2504|consen 472 LLILR 476 (509)
T ss_pred HHHhH
Confidence 55555
No 177
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.73 E-value=0.084 Score=37.74 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH-HHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-VSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL 73 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~ 73 (130)
+++..++.|++.+...+....++.+. +++++++..+.+. .....|..+++.+++.+ ++ ..++..++..++
T Consensus 296 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 296 LIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 35678889999998888888888886 5555678777765 55667777888776665 44 344444444433
No 178
>PRK11462 putative transporter; Provisional
Probab=95.50 E-value=0.2 Score=37.09 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=50.6
Q ss_pred HHHHHHhhhhcccchhhhhhhhccC-CcchhHHHHHHHHHHHhHHHHHHHhhhhh-----------hhHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCE-PRIRGSLTLLSGVSGNGGALGIFFLNAIT-----------DWRTTTLISSVVPI 72 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~wr~~~~~~~~~~~ 72 (130)
.-++..++.......-.++.+|+++ .++|++..++-..+..+|..+++.+...+ +|+....+.+++.+
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~ 194 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 3344455555555555667788877 69999999998888787776665442211 57776666666555
Q ss_pred HHHH-HHhhcccc
Q psy168 73 LAFA-MILFLPES 84 (130)
Q Consensus 73 ~~~~-~~~~~pes 84 (130)
+... .+...+|.
T Consensus 195 i~~~i~~~~~kE~ 207 (460)
T PRK11462 195 MMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHhcceec
Confidence 5443 44445554
No 179
>KOG3762|consensus
Probab=95.48 E-value=0.05 Score=41.18 Aligned_cols=74 Identities=23% Similarity=0.210 Sum_probs=54.3
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHH-----HHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-----VSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-----~~~~~g~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~ 78 (130)
.-+++|+..+..+..+..|++...|++.|.++.++.+ ++.++|.++|..+-..++=|..|.+.++.+++..+.+
T Consensus 465 ieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 465 IEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999998864 3334455555444333466777777766666655433
No 180
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.47 E-value=0.034 Score=41.16 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=47.5
Q ss_pred HHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHhhcc
Q psy168 8 MLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMILFLP 82 (130)
Q Consensus 8 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~~~~p 82 (130)
+.|++.+...+....++.+.. ++.+|...++.+....+|..+++.+.... +|+..|++.+++.++..+..++.+
T Consensus 357 l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 357 LFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 344444434444445556654 46899999998887777887777664321 699999888776666655444443
No 181
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=95.47 E-value=0.03 Score=40.57 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=40.6
Q ss_pred chhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHH
Q psy168 18 GPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSV 69 (130)
Q Consensus 18 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~ 69 (130)
+.......|..|++.|++..++.+....+|..+++.+.+.+ +|++.+++.++
T Consensus 352 ~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 352 AIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred hHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 33445557889999999999999999999999998775544 58888876654
No 182
>PRK15075 citrate-proton symporter; Provisional
Probab=95.43 E-value=0.088 Score=38.38 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=34.8
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHH-HHHHHhHHHHHHHhhhh
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLS-GVSGNGGALGIFFLNAI 57 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~ 57 (130)
-++.|++.+...+....+++|..|++.|++..++. +.+..++..++|.+...
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 338 ELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence 34456666666666667889999999999998885 44444434455555443
No 183
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=95.43 E-value=0.17 Score=36.38 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
++-++.|++.+...+........ .++++||+..+.++....+|..+++.+....
T Consensus 314 ~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 314 AGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667778887766655554433 3458999999999999999998888887655
No 184
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.37 E-value=0.17 Score=36.44 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=47.8
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcc-hhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRI-RGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVV 70 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~ 70 (130)
++-++.|++.+...+...+.+.+..|++. +|+..++.+....+|..++..+.... .++..+...+.+
T Consensus 298 ~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 298 PLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45567888888777777777788766655 79999999999888888888775544 444444444443
No 185
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=95.30 E-value=0.065 Score=39.30 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHHhh
Q psy168 9 LGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------DWRTTTLISSVVPILAFAMILF 80 (130)
Q Consensus 9 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~wr~~~~~~~~~~~~~~~~~~~ 80 (130)
.|.+.+...+.......|..|. .+|...++.+....+|..+++.+...+ +|+..|.+.++..++..+....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 371 ANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 3333333333333344566655 899999999999999999988775543 3888888877666665544333
No 186
>KOG0255|consensus
Probab=95.26 E-value=0.11 Score=38.74 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=56.1
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--hhHH-HHHHHHHHHHHHH-HHHhh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--DWRT-TTLISSVVPILAF-AMILF 80 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~wr~-~~~~~~~~~~~~~-~~~~~ 80 (130)
.-.+..++.+..+.+.+.+.+|.+|...|+.+.+.......+|.++++.+.... .+.. .+...+....+.. +...+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 491 (521)
T KOG0255|consen 412 LPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLL 491 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhc
Confidence 334445556666666789999999999999999999999999999998876544 1111 1112233334444 35588
Q ss_pred cccchh
Q psy168 81 LPESPT 86 (130)
Q Consensus 81 ~pes~~ 86 (130)
+||+..
T Consensus 492 lpet~~ 497 (521)
T KOG0255|consen 492 LPETKG 497 (521)
T ss_pred CcccCC
Confidence 999853
No 187
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=95.21 E-value=0.14 Score=36.66 Aligned_cols=55 Identities=22% Similarity=0.071 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
+++.++.|++.+...+....+..|..| +.++...++.+....+|..+++.+....
T Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 303 LVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445677888888888888888888886 5789999999988899999998887666
No 188
>PRK09669 putative symporter YagG; Provisional
Probab=95.08 E-value=0.23 Score=36.34 Aligned_cols=55 Identities=11% Similarity=-0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCC-------cchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEP-------RIRGSLTLLSGVSGNGGALGIFFLNAI 57 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~ 57 (130)
++.-++.|++.+...+.....++|..+. +..|...+....+..+|..+++.+.+.
T Consensus 323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999988753 334455666666666676666655443
No 189
>PRK10429 melibiose:sodium symporter; Provisional
Probab=95.00 E-value=0.23 Score=36.77 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccC-------CcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCE-------PRIRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
+.-++.|++.+...+....+++|..+ .+..|...+....+.-+|..+++.+.+
T Consensus 329 i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 329 IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778888888888888998855 333455666666666666666655533
No 190
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=94.97 E-value=0.033 Score=40.77 Aligned_cols=74 Identities=16% Similarity=0.071 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHh-HHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG-GALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
.++-+++|+..-+...+.-....|..|++--|++.++...+..+ |...+...-+.+ +|...|+...+.+++..+
T Consensus 350 ~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~l 428 (448)
T COG2271 350 AILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAIL 428 (448)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHH
Confidence 45667888888777777778889999999999999999888777 666655443333 899888876665555444
No 191
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=94.93 E-value=0.038 Score=41.16 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=60.6
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI--RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF 75 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~ 75 (130)
++++-.+.++|.|..=+.....++|.+|++. |...-+++.++..+|+++++.+.... +|...|...++-....+
T Consensus 120 l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl 199 (498)
T COG3104 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL 199 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999998843 44555567777888888888886665 89999998876666655
Q ss_pred HHHhhc
Q psy168 76 AMILFL 81 (130)
Q Consensus 76 ~~~~~~ 81 (130)
+.+...
T Consensus 200 ~~f~~~ 205 (498)
T COG3104 200 VIFLLG 205 (498)
T ss_pred HHHHHc
Confidence 544443
No 192
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=94.87 E-value=0.22 Score=36.56 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=60.1
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+.+.+.+-|+-.+.....+..|+++.+|++..++.-.+ ++...++|..+.+.+.+.. |.+-+|++.+.+.++..+
T Consensus 315 i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~l 394 (412)
T PF01306_consen 315 ISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTL 394 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHH
Confidence 35678888888998889999999999999998777766 4788888888777776655 788888877766555544
Q ss_pred -HHhhcc
Q psy168 77 -MILFLP 82 (130)
Q Consensus 77 -~~~~~p 82 (130)
..+.++
T Consensus 395 i~~f~l~ 401 (412)
T PF01306_consen 395 ISAFTLK 401 (412)
T ss_dssp HHHHHS-
T ss_pred Hheeeec
Confidence 443333
No 193
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=94.86 E-value=0.2 Score=37.59 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=45.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHH-HHhHHHHHHHhhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVS-GNGGALGIFFLNA 56 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~ 56 (130)
+++.-++.++|+-...|+....+++..|++.||..++.+... ..+|..++..+..
T Consensus 380 l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 380 MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD 435 (493)
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999998664 3677776655533
No 194
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=94.69 E-value=0.11 Score=32.89 Aligned_cols=53 Identities=13% Similarity=0.017 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFL 54 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 54 (130)
++.+-.+.|++.+...+....|+.+...++.|++..+++-....++.++|.++
T Consensus 92 l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 92 LYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999988766666666666544
No 195
>PRK10429 melibiose:sodium symporter; Provisional
Probab=94.55 E-value=0.45 Score=35.21 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=46.7
Q ss_pred HHHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhh-----h---h---hhHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNA-----I---T---DWRTTTLISSVVPI 72 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-----~---~---~wr~~~~~~~~~~~ 72 (130)
.-++.+++.....+...+..+|+. +.++|.+..++-..+..+|..+.+.+.. . . +|++..++.++...
T Consensus 112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~ 191 (473)
T PRK10429 112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFI 191 (473)
T ss_pred HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 334455555555555667789988 6899999888755555554333332211 1 1 57776666666555
Q ss_pred HHHH-HHhhcccc
Q psy168 73 LAFA-MILFLPES 84 (130)
Q Consensus 73 ~~~~-~~~~~pes 84 (130)
+..+ .++..+|.
T Consensus 192 ~~~~~~~~~~~e~ 204 (473)
T PRK10429 192 VSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHcCceec
Confidence 5443 44446664
No 196
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=94.46 E-value=0.089 Score=38.55 Aligned_cols=55 Identities=20% Similarity=0.069 Sum_probs=45.6
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
+.-++.|++.+...+.......+..|++.|+...++.+....+|..+++.+...+
T Consensus 353 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 353 LPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888998887777777777889999999999999999999999988775554
No 197
>KOG2532|consensus
Probab=94.46 E-value=0.13 Score=38.34 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=45.8
Q ss_pred CCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHHhhc--ccchhHH
Q psy168 29 EPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------DWRTTTLISSVVPILAFAMILFL--PESPTWL 88 (130)
Q Consensus 29 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~wr~~~~~~~~~~~~~~~~~~~~--pes~~~~ 88 (130)
.+++-+..+++.+...++..+++|.+...+ .||++|++.++..++..+.+.++ -|...|.
T Consensus 387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~ 455 (466)
T KOG2532|consen 387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWT 455 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCcc
Confidence 778889999999999999999999885544 89999999988777765544443 3433453
No 198
>KOG0254|consensus
Probab=94.42 E-value=0.45 Score=35.67 Aligned_cols=71 Identities=20% Similarity=0.093 Sum_probs=43.2
Q ss_pred hcccchhhhhhhhccCCcchhHHHHHHHHHHH-hHHHHHHHhhhhhh---hHHHHHHHHHHHHH-HH-HHHhhcccc
Q psy168 14 GFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGN-GGALGIFFLNAITD---WRTTTLISSVVPIL-AF-AMILFLPES 84 (130)
Q Consensus 14 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~---wr~~~~~~~~~~~~-~~-~~~~~~pes 84 (130)
.+..++...+.+|.+|.+.|+++.++...... ....+......... +...|......+.+ .. +.+++.|||
T Consensus 410 ~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 410 IGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred cccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence 33456667889999999999999998644433 33333332222222 24455554444444 34 477889998
No 199
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=94.29 E-value=0.57 Score=33.09 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHH-HhHHHHHHHhh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSG-NGGALGIFFLN 55 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~ 55 (130)
.-++.|++.+...+....+..|..| +.+++..++.+... ..|.+.++.++
T Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888776 67889888876554 45666666655
No 200
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=94.16 E-value=0.11 Score=38.69 Aligned_cols=56 Identities=11% Similarity=-0.088 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
.+.-++.|++.|...+.....+.+..|+++++...++++....+|..+|..+.+.+
T Consensus 355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999988888888888999999999999999999999999888765543
No 201
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=94.16 E-value=0.64 Score=33.98 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
+.-++.|++.++....-...+++ .-++.++...+++.....+|..+|..+++.. ++....+..++.....+..
T Consensus 305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~ 381 (394)
T COG2814 305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLL 381 (394)
T ss_pred HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 34455777777766666666677 6678889999998888888888888877765 7888888888777766553
No 202
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=94.11 E-value=0.43 Score=32.68 Aligned_cols=76 Identities=8% Similarity=-0.016 Sum_probs=44.3
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHhh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFAMILF 80 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~~~~ 80 (130)
.-++.|.+.+...+...+...+.+| ++||+..++.....+++..+-..+...+ .-...+.....+..+.++..++
T Consensus 102 ~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 102 FLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555555444555555567777 5899999999888888766655443332 2344444444444444443333
Q ss_pred c
Q psy168 81 L 81 (130)
Q Consensus 81 ~ 81 (130)
.
T Consensus 181 v 181 (250)
T PF06813_consen 181 V 181 (250)
T ss_pred e
Confidence 3
No 203
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.89 E-value=0.37 Score=35.47 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=50.2
Q ss_pred HHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------------hhHHHHHHHHHHHHHHH
Q psy168 8 MLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------------DWRTTTLISSVVPILAF 75 (130)
Q Consensus 8 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------~wr~~~~~~~~~~~~~~ 75 (130)
+..+..+..+......++|++|+..-|+.-++......+|..++..++..+ +-.+..++..+..++..
T Consensus 327 l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l 406 (433)
T PF03092_consen 327 LEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPL 406 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 344444445555667889999999999988888777777777777665554 22344445555554444
Q ss_pred HHHhhcccc
Q psy168 76 AMILFLPES 84 (130)
Q Consensus 76 ~~~~~~pes 84 (130)
++..++|+.
T Consensus 407 ~ll~lLp~~ 415 (433)
T PF03092_consen 407 PLLFLLPPQ 415 (433)
T ss_pred HHHHHcCCC
Confidence 455566664
No 204
>KOG4686|consensus
Probab=93.72 E-value=0.19 Score=35.65 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
++..++|+..+...+.-.-.++.+.|.+.-|++-++.|....+|..+.+++.+++
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 4566777777766555666788889999999999999999999999999998877
No 205
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=93.64 E-value=0.14 Score=37.39 Aligned_cols=56 Identities=18% Similarity=-0.044 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
++.-+..|+..|..+..++..+.|-.++++|...++...++.+.|..++..++-..
T Consensus 339 f~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 339 FVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999888765543
No 206
>TIGR00901 2A0125 AmpG-related permease.
Probab=93.60 E-value=0.095 Score=36.92 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSG 44 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~ 44 (130)
..+.++.|++.+...+....+++|.+|++.||+..++++...
T Consensus 313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 313 FLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 446778899999999999999999999999999999887654
No 207
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=93.55 E-value=0.22 Score=36.60 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~~ 77 (130)
.++=.+.|.+.|+.+..+=+|.++..|+++-+..-+++++.--.+..++|.+-..+ +=|.-+....+...+-++.
T Consensus 345 ~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~ 424 (438)
T COG2270 345 WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL 424 (438)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence 34557889999999999999999999999999999999999999999998876555 4455555444443333444
Q ss_pred Hhhccc
Q psy168 78 ILFLPE 83 (130)
Q Consensus 78 ~~~~pe 83 (130)
+..+|+
T Consensus 425 L~~v~~ 430 (438)
T COG2270 425 LLRVKV 430 (438)
T ss_pred EEeecC
Confidence 444554
No 208
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=93.25 E-value=1.1 Score=33.56 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=57.7
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCC-cchhHHHHHHHHHHHhHHHHHHHhhhhh-----------hhHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGVSGNGGALGIFFLNAIT-----------DWRTTTLISSVVP 71 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~wr~~~~~~~~~~ 71 (130)
+.-++.|++.......-.+..+|+.+. ++|.+..+.-+.+..+|.++...+...+ +|+...++.++++
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~ 196 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG 196 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 456677777777777777788887554 9999999998888888876665543222 7888877777776
Q ss_pred HHHHH-HHhhcccch
Q psy168 72 ILAFA-MILFLPESP 85 (130)
Q Consensus 72 ~~~~~-~~~~~pes~ 85 (130)
++..+ .++-..|.+
T Consensus 197 ~i~~l~~~~~v~ER~ 211 (467)
T COG2211 197 VILLLFCFFNVKERV 211 (467)
T ss_pred HHHHHHHHHHhhccc
Confidence 66555 555555543
No 209
>PTZ00207 hypothetical protein; Provisional
Probab=93.05 E-value=0.97 Score=34.86 Aligned_cols=86 Identities=10% Similarity=-0.073 Sum_probs=60.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHH-hhhhh-----------------hhHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFF-LNAIT-----------------DWRTT 63 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~-----------------~wr~~ 63 (130)
++++-++.|++.|...++....++|++. |+-|+.-.+..+..-+|.++-.. +.+.+ =.|..
T Consensus 455 L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~ 533 (591)
T PTZ00207 455 LPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMP 533 (591)
T ss_pred hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhH
Confidence 5778899999999999999999999999 88888877777777777666522 22211 15677
Q ss_pred HHHHHHHHHHHHH-HHhhcccchhHH
Q psy168 64 TLISSVVPILAFA-MILFLPESPTWL 88 (130)
Q Consensus 64 ~~~~~~~~~~~~~-~~~~~pes~~~~ 88 (130)
|++.+..++..++ .....-++.+++
T Consensus 534 ~~v~~~~~~~g~~~s~~l~~R~r~~y 559 (591)
T PTZ00207 534 LAFLLGLSFLAFITSTYVHLQYRRLC 559 (591)
T ss_pred HHHHHHHHHHHHHHHhheeeehHHHH
Confidence 7777766666554 344444555444
No 210
>KOG2563|consensus
Probab=92.96 E-value=0.57 Score=34.86 Aligned_cols=54 Identities=22% Similarity=0.163 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI 57 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 57 (130)
.+..+.+.+.--.........+-|+++++|..+.++-.++..+|..++.++...
T Consensus 145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccce
Confidence 344445444444333434566779999999999988777766666666665443
No 211
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=92.70 E-value=0.82 Score=35.30 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=62.3
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------------------------
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------------------------- 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------------------- 58 (130)
..-++.|++.|.......+.+.-..|.+.-+..+++....-.+|..++..+...+
T Consensus 410 ~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~ 489 (599)
T PF06609_consen 410 AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPES 489 (599)
T ss_pred HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChh
Confidence 4456788888887777777777778888888888888777777766665432110
Q ss_pred -----------------------------------------hhHHHHHHHHHHHHHHHHHHhhcccchhHH
Q psy168 59 -----------------------------------------DWRTTTLISSVVPILAFAMILFLPESPTWL 88 (130)
Q Consensus 59 -----------------------------------------~wr~~~~~~~~~~~~~~~~~~~~pes~~~~ 88 (130)
.+|++++....++.+..++-+++++..++.
T Consensus 490 sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m 560 (599)
T PF06609_consen 490 SLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM 560 (599)
T ss_pred hHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence 788888888888888888777777765543
No 212
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=91.73 E-value=2.6 Score=31.01 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=55.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh--------------hhHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT--------------DWRTTTLIS 67 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~wr~~~~~~ 67 (130)
+..+-++.|++.|.....+...+.+...+++.|..++.+...+.++.-++..+++.. ++-.+|.+.
T Consensus 304 ~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lE 383 (403)
T PF03209_consen 304 FRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALE 383 (403)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 345678999999998888888999999999999999999888887776666665433 456666666
Q ss_pred HHHHHHHH
Q psy168 68 SVVPILAF 75 (130)
Q Consensus 68 ~~~~~~~~ 75 (130)
++..+...
T Consensus 384 a~ll~~a~ 391 (403)
T PF03209_consen 384 AVLLLAAL 391 (403)
T ss_pred HHHHHHHH
Confidence 55444433
No 213
>PRK10091 MFS transport protein AraJ; Provisional
Probab=91.72 E-value=2 Score=30.70 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHHHHhhhhcccchhh-hhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIM-SYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~-~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
+-++.|++.++..+... ....+..+.+.++.. ..+....+|..+++.+.+.+ +|+..+...++...+...
T Consensus 295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 295 FAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence 33445555443333323 334444455555543 34566777888888776654 688888877665555443
No 214
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=91.68 E-value=2.5 Score=33.11 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcch---hHHHHHHHHHHHhHHHHHHHhhhhh-----------hhHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIR---GSLTLLSGVSGNGGALGIFFLNAIT-----------DWRTTTLISS 68 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r---~~~~~~~~~~~~~g~~~~~~~~~~~-----------~wr~~~~~~~ 68 (130)
+++=.+..+|.|+.-+.......|.++++.+ ...-.++..+..+|.++++.+...+ +|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 4556677788998888889999998876543 3444445666666777666554333 3888888877
Q ss_pred HHHHHHHHH
Q psy168 69 VVPILAFAM 77 (130)
Q Consensus 69 ~~~~~~~~~ 77 (130)
+..++.++.
T Consensus 169 i~m~ia~lv 177 (654)
T TIGR00926 169 ILMILALIV 177 (654)
T ss_pred HHHHHHHHH
Confidence 666665543
No 215
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=91.67 E-value=2.3 Score=31.91 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=53.4
Q ss_pred HHHhhhhcccchhhhhhhhccCCcch--------------------------hHHHHHHHHHHHhHHHHHHHhhhhh---
Q psy168 8 MLGAGMGFCEGPIMSYLGEVCEPRIR--------------------------GSLTLLSGVSGNGGALGIFFLNAIT--- 58 (130)
Q Consensus 8 l~G~~~g~~~~~~~~~~~e~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~--- 58 (130)
+.-++.+........++.|+.+++.+ ++..+.-.....+|.++..++....
T Consensus 135 ia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~ 214 (477)
T PF11700_consen 135 IANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVIS 214 (477)
T ss_pred HHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555666667788999999888 8888887666666766665553332
Q ss_pred ---------hhHHHHHHHHHHHHHHHH-HHhhcccchh
Q psy168 59 ---------DWRTTTLISSVVPILAFA-MILFLPESPT 86 (130)
Q Consensus 59 ---------~wr~~~~~~~~~~~~~~~-~~~~~pes~~ 86 (130)
+-|..+.+.++-.+++.+ .+++.||.|+
T Consensus 215 ~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 215 PGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred CCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 247777777766666555 6777887764
No 216
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=91.57 E-value=0.85 Score=33.28 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=38.5
Q ss_pred hHHHHHHHHhhhhcccchhhhhh----h----hccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYL----G----EVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSV 69 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~----~----e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~ 69 (130)
+++.|++.|++.++..+...... . |......|.+..+ .+|..+++.+.... .|+. |++.++
T Consensus 95 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~ 167 (418)
T TIGR00889 95 MFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAG 167 (418)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHH
Confidence 35678888887665555443332 2 2232223333333 23444444444333 3443 445554
Q ss_pred HHHHHHHHHhhcccch
Q psy168 70 VPILAFAMILFLPESP 85 (130)
Q Consensus 70 ~~~~~~~~~~~~pes~ 85 (130)
...+..+..++.||+|
T Consensus 168 ~~~~~~~~~~~~~e~~ 183 (418)
T TIGR00889 168 SSALLGVFALTLPDIP 183 (418)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 4555444556778876
No 217
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=91.38 E-value=1 Score=32.72 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHHhhhhcccchhhhhhhhccCC-cchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
-++.|+|.|+.++.+..++..-+.. ++-+...++.|..-.+=..++|.+.+.+ +|+..........+...+
T Consensus 303 ~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 303 ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 4899999999999999999876554 5555555555555444444455555544 898887776655555444
No 218
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=90.83 E-value=1.8 Score=31.97 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~~~~ 77 (130)
+.-++-|++.+. ...-+.|+-...++++-.+.++..-....+|..++.+++..+ +.+.+.++......+.++.
T Consensus 99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 456677777774 455667887778888888999888888888877777777755 5566666655444444445
Q ss_pred Hhhcccch
Q psy168 78 ILFLPESP 85 (130)
Q Consensus 78 ~~~~pes~ 85 (130)
-+++|..+
T Consensus 178 ~~fLP~~~ 185 (412)
T PF01770_consen 178 ALFLPMPK 185 (412)
T ss_pred HHHcCCCC
Confidence 45566544
No 219
>PRK11462 putative transporter; Provisional
Probab=90.39 E-value=1.9 Score=32.02 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=14.5
Q ss_pred HHHHhhhhcccchhhhhhhhccC
Q psy168 7 IMLGAGMGFCEGPIMSYLGEVCE 29 (130)
Q Consensus 7 ~l~G~~~g~~~~~~~~~~~e~~~ 29 (130)
++.|++.+...+.....++|..+
T Consensus 326 ~l~g~~~~~~~~l~~~m~ad~~d 348 (460)
T PRK11462 326 FVIGVLHQLVTPIQWVMMSDTVD 348 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Confidence 45666666666665666776655
No 220
>PRK11043 putative transporter; Provisional
Probab=89.67 E-value=5 Score=28.74 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=37.7
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
+-.+.|++.+..++.......+..| +.++...++++.....+...++.+.+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456777888888877777777665 5799999998877666666666554443
No 221
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=89.67 E-value=1.3 Score=32.61 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=53.3
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCC--cchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-H
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEP--RIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-M 77 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~ 77 (130)
.-++..++....-.++-..+.|.... +.||...+....+..+|.+++..+++.. +++..|.+.+++..+..+ .
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~ 171 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVA 171 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHH
Confidence 33555566666666666677776532 3377777888888888999888777655 788888887766666554 4
Q ss_pred Hhhccc
Q psy168 78 ILFLPE 83 (130)
Q Consensus 78 ~~~~pe 83 (130)
.+..+|
T Consensus 172 ~~~~~e 177 (433)
T PF03092_consen 172 LFLLEE 177 (433)
T ss_pred HHhhhh
Confidence 445554
No 222
>KOG3764|consensus
Probab=89.62 E-value=1 Score=33.27 Aligned_cols=45 Identities=7% Similarity=-0.052 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH
Q psy168 32 IRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 32 ~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
.-|...++.+.++++|+.+||.+++.+ |++|...+.++..++...
T Consensus 400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyap 448 (464)
T KOG3764|consen 400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAP 448 (464)
T ss_pred eeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHH
Confidence 667888889999999999999998877 888888887777666543
No 223
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=89.56 E-value=4.7 Score=28.49 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=26.0
Q ss_pred hcccchhhhhhhhccCCcchhHHHHHHHH-HHHhHHHHHHHhhh
Q psy168 14 GFCEGPIMSYLGEVCEPRIRGSLTLLSGV-SGNGGALGIFFLNA 56 (130)
Q Consensus 14 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~ 56 (130)
+........++.|..| +.++...+..+. ...+|..+++.++.
T Consensus 302 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 302 SMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455667666 788888887644 35567777776644
No 224
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=89.16 E-value=6.8 Score=28.53 Aligned_cols=55 Identities=11% Similarity=0.063 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
+++.++.|+|.+...+...... ....+..+|+..+++......+..++.....+.
T Consensus 316 ~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 316 VLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788777766655322 222333478888887777666666666555444
No 225
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=88.48 E-value=2.5 Score=29.63 Aligned_cols=59 Identities=10% Similarity=-0.103 Sum_probs=39.9
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTL 65 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~ 65 (130)
+-++.|++.+..+|+......+..|++ .+...++. .+..+|..+.|.+.+.+ +-+..++
T Consensus 236 ~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 236 FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 445789999999999988888877764 34555554 44557777777654443 4445544
No 226
>PRK09848 glucuronide transporter; Provisional
Probab=87.39 E-value=9.5 Score=27.97 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=28.1
Q ss_pred HHHHHhhhhcccchhhhhhhhccC-CcchhHHHHHHHHH-----HHhHHHHHHHhhh
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCE-PRIRGSLTLLSGVS-----GNGGALGIFFLNA 56 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~~~~ 56 (130)
-++.+++.+...+.......|... +++|....+.-+.+ ..+|..+++.+..
T Consensus 116 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 116 YMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666555555566554 46788776654432 2244445555443
No 227
>KOG2615|consensus
Probab=87.28 E-value=1.2 Score=32.73 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
.++-.+-.+..+..-+.....+.-..|.++||...|+.....+++-.+||++++.+
T Consensus 356 ~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 356 YLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 34455555666666677778888999999999999999999999999999998655
No 228
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=86.78 E-value=2.7 Score=31.70 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=58.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh-------h---hhHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI-------T---DWRTTTLISSVVP 71 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~---~wr~~~~~~~~~~ 71 (130)
++..-+++++|+=..-|+...+++...|+.-.+..++.+.+....|..++..++.. . .-...|+..+...
T Consensus 397 lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~ 476 (498)
T COG3104 397 LVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVA 476 (498)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999988877662 1 3344555555444
Q ss_pred HHHHH
Q psy168 72 ILAFA 76 (130)
Q Consensus 72 ~~~~~ 76 (130)
+....
T Consensus 477 i~~~~ 481 (498)
T COG3104 477 IVIGI 481 (498)
T ss_pred HHHHH
Confidence 44433
No 229
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=86.11 E-value=1.6 Score=30.71 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=36.0
Q ss_pred HHHHHhhhhcccchhhhhhhhcc-CCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVC-EPRIRGSLTLLSGVSGNGGALGIFFLNAI 57 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 57 (130)
-++.|++.|...+.....+.+.. ++++++...++.+....+|..+++.+.+.
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888877766666544 45667888887777767777777765444
No 230
>PF13347 MFS_2: MFS/sugar transport protein
Probab=84.10 E-value=9 Score=27.92 Aligned_cols=55 Identities=18% Similarity=0.047 Sum_probs=40.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCC-------cchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEP-------RIRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
+++.-++.|++.+...+.....++|..+. +..|...+......-+|..++..+..
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45667889999999999999999998774 34567777777766666666665533
No 231
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=83.74 E-value=8.2 Score=30.35 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=46.3
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
--++.|+++.........+..+-+|++.|..+.+++.+...+|.++...+...-
T Consensus 571 q~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~ 624 (654)
T TIGR00926 571 QYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE 624 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346778888887777778888889999999999999999999999998887665
No 232
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=83.41 E-value=2.1 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.040 Sum_probs=20.2
Q ss_pred HHHHHHHHhHHHHHHHhhhhh-hhHHHHHHHHH
Q psy168 38 LLSGVSGNGGALGIFFLNAIT-DWRTTTLISSV 69 (130)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~~~ 69 (130)
-+.+....++.+++.+.++.. +.+.+++..++
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~ 43 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFSYTFYIYGA 43 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777766666 66666666543
No 233
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=83.18 E-value=15 Score=27.79 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCC-------cchhHHHHHHHHHHHhHHHHHHHh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEP-------RIRGSLTLLSGVSGNGGALGIFFL 54 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~ 54 (130)
+++..++.+++.+...+.....++|...- +.-|..-+....+.=+|..++..+
T Consensus 330 ~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 330 IVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred HHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999998776332 333344444444444455555433
No 234
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=83.10 E-value=2.9 Score=31.07 Aligned_cols=54 Identities=15% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
++.-++.|+..|-..+..+.+..+..++++|..++.+...+..+|..+|..++.
T Consensus 376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999888888889999999999999999999999998888876643
No 235
>KOG3098|consensus
Probab=82.64 E-value=17 Score=27.42 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFL 54 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 54 (130)
+++-++.|++-+...+..+++++..+ ++.|...-+++-.-.+++..++...
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 45668899999999999999999999 6666677777666656555554433
No 236
>KOG1479|consensus
Probab=82.36 E-value=2.3 Score=31.30 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
+++.-++.|+..|=.....+.+..+..+++++..++.+...+...|...|.+++.
T Consensus 346 ~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 346 FIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred HHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3556778899999888888899999999999999999999999999988877644
No 237
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=78.75 E-value=1.9 Score=24.52 Aligned_cols=33 Identities=15% Similarity=0.455 Sum_probs=20.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRG 34 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~ 34 (130)
++++|.+.|-+.+..-........|..|...-|
T Consensus 34 L~iGR~ilGs~~S~~Aga~Li~~Pdl~plAv~G 66 (89)
T PF04550_consen 34 LFIGRVILGSAVSVVAGAALIQFPDLPPLAVIG 66 (89)
T ss_pred HHhHHHHHhhHHHHHHHHHHhcCCCCCHHHHHH
Confidence 456777777777766666666666666654444
No 238
>KOG1237|consensus
Probab=78.73 E-value=4.5 Score=31.23 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
-+++|++..........+.-+-+|++-|+.+++++.+..++|.+++.++....
T Consensus 465 yvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v 517 (571)
T KOG1237|consen 465 YVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLV 517 (571)
T ss_pred HHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999988888888998899999999999999999999999998875433
No 239
>KOG3810|consensus
Probab=78.14 E-value=16 Score=26.89 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=41.7
Q ss_pred chhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHHhhcccchh
Q psy168 18 GPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------DWRTTTLISSVVPILAFAMILFLPESPT 86 (130)
Q Consensus 18 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~wr~~~~~~~~~~~~~~~~~~~~pes~~ 86 (130)
..-++|+-+..+++.+.+.++..-...-.|...|.+++... ++..+-++......+....-+++|.-++
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~r 187 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKR 187 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCch
Confidence 34456677778888888888888777777777777776655 3333333433333333334445555443
No 240
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=78.02 E-value=24 Score=25.68 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=21.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhh-hhc
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYL-GEV 27 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~-~e~ 27 (130)
++++|++.|++.+..+..-..+. .|.
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988877755 454
No 241
>PRK10133 L-fucose transporter; Provisional
Probab=76.95 E-value=14 Score=27.21 Aligned_cols=50 Identities=10% Similarity=-0.197 Sum_probs=34.0
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
.-.+.|++.+..+|..+....+..|++ .+...++..... .|..+++.+.+
T Consensus 353 ~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G 402 (438)
T PRK10133 353 ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMG 402 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHHH
Confidence 456889999999999999998887653 556666665443 44444444433
No 242
>KOG1237|consensus
Probab=76.62 E-value=6.6 Score=30.33 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=53.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccC---Ccch-h--HHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCE---PRIR-G--SLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVP 71 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~---~~~r-~--~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~ 71 (130)
++.+..+..+|.|+.-+....+-+|-++ ++++ . .....+....+.|..++..+.-+. +|.+.|.+..+..
T Consensus 155 ~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~ 234 (571)
T KOG1237|consen 155 LYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLN 234 (571)
T ss_pred HHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHH
Confidence 4456667778999999999999999888 3222 2 445566777788888877664444 8999998876655
Q ss_pred HHHHH
Q psy168 72 ILAFA 76 (130)
Q Consensus 72 ~~~~~ 76 (130)
.+..+
T Consensus 235 ~lai~ 239 (571)
T KOG1237|consen 235 ALAIL 239 (571)
T ss_pred HHHHH
Confidence 55444
No 243
>KOG4686|consensus
Probab=75.01 E-value=3.4 Score=29.58 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFL 54 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 54 (130)
++++||+.|+|.-........|..-|+..|+-+...++.....-+|+.+-..+
T Consensus 139 M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~l 191 (459)
T KOG4686|consen 139 MLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLL 191 (459)
T ss_pred HHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeee
Confidence 57899999999887777778899999999999999999888888887665444
No 244
>KOG3098|consensus
Probab=74.55 E-value=35 Score=25.83 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=43.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFL 54 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 54 (130)
++++-.+.|+|.+..+..--.|++|.++.+.+.+.+++.=.....+.++|.+.
T Consensus 105 ~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 105 LYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred HHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence 35667889999999999999999999999999999998766666666666544
No 245
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=74.14 E-value=1.1 Score=31.54 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=3.6
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA 56 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 56 (130)
++.-++.|+..|-..+..+.+..+..++++|..++.+...+...|..+|..++.
T Consensus 252 ~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 252 IILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp ---------------HHHH-----------------------------------
T ss_pred HHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889899888888899999999999999999888888888888876543
No 246
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=72.35 E-value=14 Score=27.49 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=47.4
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~ 76 (130)
++...+..|+|.|..+-..+.+-.+ +-|..+++......+|..+.|..-... ++...|++.....++..+
T Consensus 321 ~l~l~~~~G~GnGsvfk~Ip~if~~-----~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v 395 (417)
T COG2223 321 FLALFVFAGLGNGSVFKMIPVIFPK-----ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV 395 (417)
T ss_pred HHHHHHHhccCcchheeechHHHHh-----hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3456677788888777666555444 677888888888888876666553333 588888877666655554
No 247
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=71.75 E-value=28 Score=23.58 Aligned_cols=48 Identities=23% Similarity=0.129 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc--ccchhHHHhcCChHHHHHHHHHhhC
Q psy168 59 DWRTTTLISSVVPILAFAMILFL--PESPTWLIYKGRMVDAEKSLRWLRG 106 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~~~~~--pes~~~~~~~~~~~~a~~~l~~~~~ 106 (130)
++.|.+.+.+++..+++..+.+. -|...|-...+....|...+..+.+
T Consensus 50 ~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 50 GSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcC
Confidence 54466666666655554444443 3444566677777777777777655
No 248
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=70.56 E-value=23 Score=25.23 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=23.3
Q ss_pred hhhhccCCcch-hHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHH
Q psy168 23 YLGEVCEPRIR-GSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISS 68 (130)
Q Consensus 23 ~~~e~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~wr~~~~~~~ 68 (130)
...+..|.+.| +...+...+...+|..+++.+....++.......+
T Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~ 360 (392)
T PRK10473 314 MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG 360 (392)
T ss_pred HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 33445555444 44445555555566666655555555544343333
No 249
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=70.29 E-value=7.4 Score=28.72 Aligned_cols=74 Identities=23% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHH-
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----DWRTTTLISSVVPILAFAM- 77 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~wr~~~~~~~~~~~~~~~~- 77 (130)
++-.+.|++.|.-......+.+ .+++ ...+.+..+.+.+.++|+...... .-|..+......+++..+.
T Consensus 117 ~Gv~las~ssg~GE~tfL~lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~ 191 (402)
T PF02487_consen 117 LGVVLASLSSGLGEVTFLSLTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSY 191 (402)
T ss_pred HHHHHHhhhhhhhHHHHHHHHH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 3445555655555554444433 3443 234555555555555555432222 3455666666555555443
Q ss_pred Hhhcc
Q psy168 78 ILFLP 82 (130)
Q Consensus 78 ~~~~p 82 (130)
++.+|
T Consensus 192 f~~L~ 196 (402)
T PF02487_consen 192 FFLLP 196 (402)
T ss_pred HHhhc
Confidence 33344
No 250
>KOG2325|consensus
Probab=69.84 E-value=2.3 Score=32.07 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=45.7
Q ss_pred HHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHH
Q psy168 8 MLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISS 68 (130)
Q Consensus 8 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~ 68 (130)
+.|.+.........+.-+|+..++.++...+.++.....+..+++.+.... |.|+...+..
T Consensus 397 ~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~ 461 (488)
T KOG2325|consen 397 VFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILL 461 (488)
T ss_pred eeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHH
Confidence 344444444555667789999999999999999999999999999886655 5555554443
No 251
>PRK03612 spermidine synthase; Provisional
Probab=69.04 E-value=48 Score=25.43 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=28.9
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
-++.|+..|...|....+..+... ++-+...+-......+|.++|.++..+.
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 355677777777766555544322 1223445555556666666666654443
No 252
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=67.14 E-value=20 Score=21.75 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=7.1
Q ss_pred HHHhhcccchh
Q psy168 76 AMILFLPESPT 86 (130)
Q Consensus 76 ~~~~~~pes~~ 86 (130)
++++.+|+.|.
T Consensus 58 ~l~~~lp~~P~ 68 (118)
T PRK10697 58 ILSFALDPMPD 68 (118)
T ss_pred HHHHhccCCcc
Confidence 36666777664
No 253
>KOG2816|consensus
Probab=66.61 E-value=52 Score=24.85 Aligned_cols=48 Identities=13% Similarity=-0.011 Sum_probs=38.9
Q ss_pred hhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 11 AGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 11 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
...+...+..-..++-+..++++|+..++......+...+++.+-..+
T Consensus 342 ~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 342 ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 334556677778889999999999999999999999998888775443
No 254
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=64.85 E-value=45 Score=25.20 Aligned_cols=45 Identities=9% Similarity=-0.113 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHhHHHHHHHh-hhhh----hhHHHHHHHHHHHHHHHH
Q psy168 32 IRGSLTLLSGVSGNGGALGIFFL-NAIT----DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 32 ~r~~~~~~~~~~~~~g~~~~~~~-~~~~----~wr~~~~~~~~~~~~~~~ 76 (130)
+-|..+++....-.+|.++.|.. +... ++...|+...+...++.+
T Consensus 399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 448 (462)
T PRK15034 399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVL 448 (462)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 55677777777778877777644 4433 466666655554444443
No 255
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=63.52 E-value=13 Score=27.59 Aligned_cols=53 Identities=15% Similarity=-0.066 Sum_probs=37.8
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
.+-++.|++.++.+|+......+..|.+. ...+...++..+|..+.|.+.+.+
T Consensus 329 ~~l~~ig~F~simfPTIfslal~~l~~~t--s~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 329 YALFLIGLFNSIMFPTIFSLALKNLGEHT--SVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccCccc--cccceeeeeheecchHHHHHHHHH
Confidence 35578899999999999999999999332 344445555566666666665554
No 256
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=63.30 E-value=11 Score=26.21 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=32.0
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHhhhh-------h--hhHHHHHHHHHHHHHHHHHHhh
Q psy168 31 RIRGSLTLLSGVSGNGGALGIFFLNAI-------T--DWRTTTLISSVVPILAFAMILF 80 (130)
Q Consensus 31 ~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~--~wr~~~~~~~~~~~~~~~~~~~ 80 (130)
+.|+..+.....+..+|.++..+.--+ . +|++.+.+.++...+.++.+..
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777777776544111 1 8999999888777666554433
No 257
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=62.91 E-value=2.4 Score=29.73 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------hhHH--HHHHHHHHHHHHHH
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------DWRT--TTLISSVVPILAFA 76 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~wr~--~~~~~~~~~~~~~~ 76 (130)
-++.|++.+..+...+.+.+. +|++.- ..+..+.+++.++..++.-.. .+.. .|.+..++.++..+
T Consensus 4 v~~~~~~~~~~q~s~~glas~-~p~~y~----~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~ 78 (309)
T PF01733_consen 4 VALIGFANAVLQSSLFGLASL-FPPKYT----QAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCII 78 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEHhhhHHHhccHHHHHhc-CCHHHH----HHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHH
Confidence 346777888777777777776 555442 334455555555554443222 2322 22233333333444
Q ss_pred HHhhcccchh
Q psy168 77 MILFLPESPT 86 (130)
Q Consensus 77 ~~~~~pes~~ 86 (130)
.+..++.+|.
T Consensus 79 ~~~~l~~~~~ 88 (309)
T PF01733_consen 79 LYFILPRSPF 88 (309)
T ss_dssp ----------
T ss_pred HHHHhccChH
Confidence 6666666653
No 258
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=62.38 E-value=16 Score=21.46 Aligned_cols=27 Identities=7% Similarity=0.293 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHH-HHHhhcccch
Q psy168 59 DWRTTTLISSVVPILAF-AMILFLPESP 85 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~-~~~~~~pes~ 85 (130)
+|+..+++...++++++ +.+.+.|++.
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 89988888766666654 4777788875
No 259
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=60.78 E-value=5 Score=24.47 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy168 61 RTTTLISSVVPILAFA 76 (130)
Q Consensus 61 r~~~~~~~~~~~~~~~ 76 (130)
||++++..++.+++++
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 4555555444444443
No 260
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=60.61 E-value=36 Score=25.51 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=34.6
Q ss_pred HHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHH
Q psy168 7 IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 7 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~~~~~~~~~~~~ 78 (130)
.++|++....+.. ..-++ ++-++..++...+..+-.+++.-..... +||....+.+....+-.+++
T Consensus 329 ~LVGlAl~lFYlL-LLSlS-----Ehi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly 395 (430)
T PF06123_consen 329 LLVGLALVLFYLL-LLSLS-----EHIGFNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLY 395 (430)
T ss_pred HHHHHHHHHHHHH-HHHHH-----hhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3555555543332 22333 3555555655444444444443333333 88888877776666655544
No 261
>KOG3880|consensus
Probab=60.58 E-value=13 Score=26.93 Aligned_cols=54 Identities=15% Similarity=0.005 Sum_probs=43.5
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
.-+.-|+--|+.++..+--+.+-.+++.|-.+++...++.+.|..++..++-..
T Consensus 348 lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 348 LILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 445667777777877777778889999999999999999999998887765544
No 262
>KOG0637|consensus
Probab=60.58 E-value=4.6 Score=30.40 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=41.4
Q ss_pred hhhhcccchhhhhhhhccCCcchhH-HHHHHHHHHHhHHHHHHHhhhhhhhHH
Q psy168 11 AGMGFCEGPIMSYLGEVCEPRIRGS-LTLLSGVSGNGGALGIFFLNAITDWRT 62 (130)
Q Consensus 11 ~~~g~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~~wr~ 62 (130)
++.-......=++.+|....+++.+ +.+.+..+.++|.++|+.++.+.+|+-
T Consensus 154 ~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 154 VANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYK 206 (498)
T ss_pred hhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceE
Confidence 4444555566678999988888888 999999999999999999987776654
No 263
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=59.73 E-value=66 Score=23.50 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLI 66 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~ 66 (130)
.+.-++.|+..+...+..+.+..|.--. ....++......+|..++......+ +-|.....
T Consensus 9 ~~~f~~~G~~~~~~~~l~~~~~~~~~~s---~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~ 73 (410)
T TIGR00885 9 TSLFALWGFANDITNPMVPQFQQAFTLT---AFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILL 73 (410)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 4566788888776666666665544222 2334555666666666665554443 55554443
No 264
>PRK11715 inner membrane protein; Provisional
Probab=58.92 E-value=39 Score=25.37 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHH
Q psy168 7 IMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 7 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~~~~~~~~~~~~ 78 (130)
.++|++....+.. .. +-.++-|+..++...+..+-..++.-+.... +||....+.+....+-.+++
T Consensus 335 lLVGlAl~lFYLL-LL-----SlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly 401 (436)
T PRK11715 335 LLVGLALVLFYLL-LL-----SLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLY 401 (436)
T ss_pred HHHHHHHHHHHHH-HH-----HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3555555543332 22 2334556666665544444444443333444 88888877776666655544
No 265
>KOG3312|consensus
Probab=57.48 E-value=16 Score=23.10 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=17.8
Q ss_pred HHhhcccchhHHHhcCChHHHHHHHHHhh
Q psy168 77 MILFLPESPTWLIYKGRMVDAEKSLRWLR 105 (130)
Q Consensus 77 ~~~~~pes~~~~~~~~~~~~a~~~l~~~~ 105 (130)
.|..+.+|.+|-..+.+.++..+-+.+..
T Consensus 26 tWvlvYRt~~Yk~LKa~vdK~sKKLE~~K 54 (186)
T KOG3312|consen 26 TWVLVYRTDKYKRLKAEVDKQSKKLEKKK 54 (186)
T ss_pred eEEEEEehhHHHHHHHHHHHHHHHHHHHh
Confidence 45556777777666666666655555543
No 266
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=56.74 E-value=68 Score=24.66 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=31.8
Q ss_pred hhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 20 IMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 20 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
-..+.+|++..++-.+..++++++..++.+++..+....
T Consensus 169 Fw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 169 FWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999888887765544
No 267
>KOG1479|consensus
Probab=53.51 E-value=92 Score=23.25 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhh----hh-----hhHHHHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNA----IT-----DWRTTTLISSVVPILAF 75 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----~~-----~wr~~~~~~~~~~~~~~ 75 (130)
.-.+.|.+.|..+...+...++ .|++.-+..++ +.+++.++..++.- .. +=-.-|.+..+..++++
T Consensus 123 ~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~----G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~ 197 (406)
T KOG1479|consen 123 IVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS----GQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCF 197 (406)
T ss_pred HHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh----cchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHH
Confidence 3445566666555554444454 55555443222 22222222222211 11 22234445555555566
Q ss_pred HHHhhcccch
Q psy168 76 AMILFLPESP 85 (130)
Q Consensus 76 ~~~~~~pes~ 85 (130)
+.+...|..|
T Consensus 198 i~y~~l~~lp 207 (406)
T KOG1479|consen 198 VLYLVLPKLP 207 (406)
T ss_pred HHHHHhhcch
Confidence 6666777777
No 268
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=52.46 E-value=87 Score=23.83 Aligned_cols=39 Identities=8% Similarity=-0.078 Sum_probs=33.8
Q ss_pred hhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168 19 PIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI 57 (130)
Q Consensus 19 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 57 (130)
....+++|.++.++-.+.-+++.++..+|.++++.+...
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999999999866444
No 269
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=50.63 E-value=56 Score=19.88 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHH----H--HHHHHhhcccchh
Q psy168 60 WRTTTLISSVVPI----L--AFAMILFLPESPT 86 (130)
Q Consensus 60 wr~~~~~~~~~~~----~--~~~~~~~~pes~~ 86 (130)
.|..|.+..+++. + -+++++++|+.|.
T Consensus 31 VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~ 63 (121)
T TIGR02978 31 VRILVVSALLFGGGFFVLVAYIALWLLLDKKPI 63 (121)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 3666655443322 1 2335666777664
No 270
>PF15050 SCIMP: SCIMP protein
Probab=50.39 E-value=15 Score=22.31 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHH
Q psy168 60 WRTTTLISSVVPI 72 (130)
Q Consensus 60 wr~~~~~~~~~~~ 72 (130)
||--||+..+.++
T Consensus 4 Wr~nFWiiLAVaI 16 (133)
T PF15050_consen 4 WRDNFWIILAVAI 16 (133)
T ss_pred HHhchHHHHHHHH
Confidence 5666666544333
No 271
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=48.78 E-value=39 Score=17.53 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy168 47 GALGIFFLNAITDWRTTTLISSVVPILAFAMILFLPE 83 (130)
Q Consensus 47 g~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 83 (130)
|++.++..+...++....++..+++++..+.....|.
T Consensus 18 gyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~~i~~ 54 (57)
T PF11151_consen 18 GYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIAVIPK 54 (57)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333333337766767766666666654444444
No 272
>PRK10692 hypothetical protein; Provisional
Probab=47.48 E-value=53 Score=18.74 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy168 59 DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~ 76 (130)
++.-.+.-.++++++...
T Consensus 37 ~Lp~~~~~gal~~IFiGA 54 (92)
T PRK10692 37 NLPQFFAHGALLSIFVGA 54 (92)
T ss_pred CchHHHHhhHHHHHHHHH
Confidence 333333344455555443
No 273
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=47.11 E-value=42 Score=17.44 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=19.7
Q ss_pred ccCCcchhHHHHHHHHHHHhHHHHHHHhhhhhhhHHH
Q psy168 27 VCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTT 63 (130)
Q Consensus 27 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~wr~~ 63 (130)
+..++....+....-.....|..-+..+.++.+||..
T Consensus 5 ~~G~k~~~lak~w~ps~~~~G~~~~l~lvy~TDWklI 41 (56)
T PF08997_consen 5 LIGPKYIELAKNWIPSAAAWGAAGGLALVYFTDWKLI 41 (56)
T ss_dssp G-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhcHHHHHHHHHhchhHHHHhhhhhhheeeecchHhh
Confidence 3444555555555555555555555555555577654
No 274
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=43.45 E-value=46 Score=16.87 Aligned_cols=24 Identities=13% Similarity=-0.075 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q psy168 59 DWRTTTLISSVVPILAFAMILFLP 82 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~~~~~p 82 (130)
-|.++|+...+.++.-++.+...+
T Consensus 23 ww~~~f~~tivfa~~Y~~~yp~~~ 46 (51)
T PF14715_consen 23 WWLWLFYGTIVFAVGYLVLYPGLG 46 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 577788877776666665554443
No 275
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=41.35 E-value=66 Score=18.06 Aligned_cols=36 Identities=28% Similarity=0.132 Sum_probs=21.7
Q ss_pred HHHHHhHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHH
Q psy168 41 GVSGNGGALGIFFLNAIT--DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 41 ~~~~~~g~~~~~~~~~~~--~wr~~~~~~~~~~~~~~~ 76 (130)
.++..+|..++..+.... ||...|++.+-.++..++
T Consensus 23 vvsfg~~~lfa~~Ln~~~~~GfPlgfw~aaQGsi~~fv 60 (81)
T PF13937_consen 23 VVSFGVGILFADELNQITFGGFPLGFWFAAQGSIIVFV 60 (81)
T ss_pred HHHHHHHHHHHHHHcCCeeCCCChHHHHHHHhHHHHHH
Confidence 445555566666664333 898888887655555444
No 276
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=41.31 E-value=27 Score=24.40 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=23.2
Q ss_pred HHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhH
Q psy168 8 MLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGG 47 (130)
Q Consensus 8 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 47 (130)
+.+++.|...+.....+++..| +++|...++.+....+|
T Consensus 327 ~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 327 ALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 3344445555555566677666 57777777766654443
No 277
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=41.01 E-value=50 Score=24.61 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-HHhhcccc
Q psy168 43 SGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-MILFLPES 84 (130)
Q Consensus 43 ~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~~~~~pes 84 (130)
.-++|..++..+++.+ +-+..||+.++.+++..+ .....|+.
T Consensus 146 wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~ 191 (412)
T PF01306_consen 146 WGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDV 191 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---S
T ss_pred HhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3344555555444433 557788887766666555 34444443
No 278
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=40.62 E-value=37 Score=18.77 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhC
Q psy168 95 VDAEKSLRWLRG 106 (130)
Q Consensus 95 ~~a~~~l~~~~~ 106 (130)
++..+.+..+..
T Consensus 38 ~~d~~~L~~L~~ 49 (75)
T PF06667_consen 38 EEDEQRLQELYE 49 (75)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 279
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=40.05 E-value=72 Score=18.11 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy168 66 ISSVVPILAFA 76 (130)
Q Consensus 66 ~~~~~~~~~~~ 76 (130)
-.++++++...
T Consensus 44 ~gal~~IFiGA 54 (89)
T PF10762_consen 44 HGALFSIFIGA 54 (89)
T ss_pred hhHHHHHHHHH
Confidence 33444444433
No 280
>KOG3626|consensus
Probab=38.10 E-value=1.1e+02 Score=24.84 Aligned_cols=47 Identities=9% Similarity=-0.147 Sum_probs=31.8
Q ss_pred HhhhhcccchhhhhhhhccCCcchhHHHHHHH-HHHHhHHHHHHHhhh
Q psy168 10 GAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSG-VSGNGGALGIFFLNA 56 (130)
Q Consensus 10 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~ 56 (130)
-+..+...+..+..+-...++++|..++++.. +.-.+|.+-+|++-+
T Consensus 597 sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG 644 (735)
T KOG3626|consen 597 SFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFG 644 (735)
T ss_pred HHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhh
Confidence 33333334555666778899999999999964 444557777777644
No 281
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.71 E-value=91 Score=18.31 Aligned_cols=12 Identities=8% Similarity=-0.269 Sum_probs=4.9
Q ss_pred HHHHHHHhhhhh
Q psy168 47 GALGIFFLNAIT 58 (130)
Q Consensus 47 g~~~~~~~~~~~ 58 (130)
..+++..++.++
T Consensus 55 pil~G~~lG~WL 66 (100)
T TIGR02230 55 PTLLGVAVGIWL 66 (100)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 282
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=35.32 E-value=2e+02 Score=21.83 Aligned_cols=67 Identities=12% Similarity=-0.034 Sum_probs=41.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCc--chhHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPR--IRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISS 68 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~wr~~~~~~~ 68 (130)
++++|++.-=|.......+..+-.+.+.-. +-.......++...+|.++.+.+..-++++-+.....
T Consensus 257 FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~l 325 (438)
T COG2270 257 FLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGL 325 (438)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHH
Confidence 566777776677777777777777444333 3333344456666777777776666668875554443
No 283
>KOG4112|consensus
Probab=35.28 E-value=94 Score=18.06 Aligned_cols=32 Identities=16% Similarity=0.056 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhh-hhHHHHHH
Q psy168 35 SLTLLSGVSGNGGALGIFFLNAIT-DWRTTTLI 66 (130)
Q Consensus 35 ~~~~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~ 66 (130)
.+-=+++....+|.++|.+++... ...+..++
T Consensus 23 kaEr~~q~ilti~aiVg~i~Gf~~Qqls~tvy~ 55 (101)
T KOG4112|consen 23 KAERFQQLILTIGAIVGFIYGFAQQQLSVTVYI 55 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467888888888888777665 44444443
No 284
>KOG4332|consensus
Probab=34.61 E-value=81 Score=22.73 Aligned_cols=70 Identities=16% Similarity=0.041 Sum_probs=41.5
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHH----HHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLS----GVSGNGGALGIFFLNAITDWRTTTLISSVVPILA 74 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~----~~~~~~g~~~~~~~~~~~~wr~~~~~~~~~~~~~ 74 (130)
+-++.-.++|..+|.....-+...|.+.|.+.+.++ ++..+++...-..-+...+-|.+|.++++...+.
T Consensus 350 ~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 350 GFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 344445677888888878888888888888887775 3333333221111111125667777766555544
No 285
>KOG2927|consensus
Probab=34.58 E-value=31 Score=25.04 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=7.9
Q ss_pred HHHHHHHHhHHHHHHHh
Q psy168 38 LLSGVSGNGGALGIFFL 54 (130)
Q Consensus 38 ~~~~~~~~~g~~~~~~~ 54 (130)
+.+.++.+.|.+++.++
T Consensus 217 gvyY~sig~~gfl~~Il 233 (372)
T KOG2927|consen 217 GVYYLSIGAGGFLAFIL 233 (372)
T ss_pred ceeeeecchhHHHHHHH
Confidence 44444444444555443
No 286
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.57 E-value=66 Score=21.12 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHH
Q psy168 60 WRTTTLISSVVPILAF 75 (130)
Q Consensus 60 wr~~~~~~~~~~~~~~ 75 (130)
|+|.|.+..++.++++
T Consensus 11 WKw~f~iLLAln~l~~ 26 (197)
T COG4698 11 WKWLFFILLALNTLLA 26 (197)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998887655444433
No 287
>PRK09458 pspB phage shock protein B; Provisional
Probab=32.77 E-value=78 Score=17.55 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q psy168 95 VDAEKSLRWLR 105 (130)
Q Consensus 95 ~~a~~~l~~~~ 105 (130)
++..+.+..+.
T Consensus 38 ~~d~~~L~~L~ 48 (75)
T PRK09458 38 QEEQQRLAQLT 48 (75)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 288
>PRK10621 hypothetical protein; Provisional
Probab=32.23 E-value=1.7e+02 Score=20.09 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=14.4
Q ss_pred hccCCcchhHHHHHHHHHHHhHHHHHHHhhhhhhhHH
Q psy168 26 EVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRT 62 (130)
Q Consensus 26 e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~wr~ 62 (130)
.+..++.+++.. .......++...........+|..
T Consensus 173 ~~~~~~a~~ts~-~~~~~~~~~~~~~~~~~G~v~~~~ 208 (266)
T PRK10621 173 GFNLAKATAHAK-VLNATSNIGGLLLFILGGKVIWAT 208 (266)
T ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHHHhCCeehHHH
Confidence 433334444333 233333444433333333335654
No 289
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=32.04 E-value=89 Score=18.20 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccchh
Q psy168 59 DWRTTTLISSVVPILAFAMILFLPESPT 86 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~~~~~pes~~ 86 (130)
-|+..+++..+...++..+.-+.+|.|-
T Consensus 6 ~WKyllil~vl~~~~lyALPnlyge~pA 33 (101)
T PF13721_consen 6 LWKYLLILVVLLLGALYALPNLYGEDPA 33 (101)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCc
Confidence 5888876665443333334455667663
No 290
>CHL00132 psaF photosystem I subunit III; Validated
Probab=30.72 E-value=1.3e+02 Score=19.80 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=19.5
Q ss_pred cccchhHHHhcC-ChHHHHHHHHHhhCCCC-cchHHHHHHHHHHHHHHh
Q psy168 81 LPESPTWLIYKG-RMVDAEKSLRWLRGWSK-KDKVMVEFEQLKVEWWML 127 (130)
Q Consensus 81 ~pes~~~~~~~~-~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 127 (130)
+.|||.|..+.+ ..++.+..++++..... ....+.++++-+...+.+
T Consensus 32 Cses~aF~kR~~~~~k~Le~rlk~Y~~~s~p~lal~~qi~~tk~RFe~Y 80 (185)
T CHL00132 32 CSESPAFQKRLNNSVKKLENRLAKYEANSPPALALQQQIDKTKARFDKY 80 (185)
T ss_pred CccCHHHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 457777753222 22233334444443211 122344444444444443
No 291
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=30.71 E-value=2e+02 Score=22.12 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=22.4
Q ss_pred ccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-------hhHHHHH
Q psy168 27 VCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-------DWRTTTL 65 (130)
Q Consensus 27 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~wr~~~~ 65 (130)
...++.||...+.....+.++..++.-.+... .|+....
T Consensus 289 ~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~ 334 (521)
T PF02990_consen 289 FLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSI 334 (521)
T ss_pred hccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhh
Confidence 45666777777766555555555544443333 6876443
No 292
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=30.66 E-value=62 Score=16.94 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy168 59 DWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~~ 78 (130)
+||...++.++.+++.+.++
T Consensus 4 g~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred cccchhhHHHHHHHHHHHHh
Confidence 68888888877777755544
No 293
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=30.37 E-value=1.4e+02 Score=18.52 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy168 62 TTTLISSVVPILAFAMILFLP 82 (130)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~p 82 (130)
|..++....+++.++..+++.
T Consensus 41 WQLviNt~ttIitFlmvfLIQ 61 (132)
T PF04120_consen 41 WQLVINTATTIITFLMVFLIQ 61 (132)
T ss_pred HHHHHccHHHHHHHHHHHHHH
Confidence 444444444455444333333
No 294
>KOG0055|consensus
Probab=30.14 E-value=3.1e+02 Score=23.95 Aligned_cols=19 Identities=21% Similarity=0.600 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy168 59 DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~ 77 (130)
+||......+..+++.+..
T Consensus 807 ~W~lalv~la~~Pll~~~~ 825 (1228)
T KOG0055|consen 807 GWRLALVVLATFPLLILSG 825 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888877766665553
No 295
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=30.00 E-value=2.3e+02 Score=20.90 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccch
Q psy168 62 TTTLISSVVPILAFAMILFLPESP 85 (130)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~pes~ 85 (130)
+.+++.++...+.....+.+|++|
T Consensus 160 ~~~~i~~~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 160 LIFYIAAILSLLLAGFALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc
Confidence 445555554444444445677776
No 296
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=27.98 E-value=80 Score=22.07 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q psy168 59 DWRTTTLISSVVPILAFAMILFLP 82 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~~~~~p 82 (130)
.|.++|+...++++..++.+...|
T Consensus 29 ww~~~f~~~i~~~~~y~~~yp~~~ 52 (285)
T TIGR00782 29 WWLWTFYATIVWGFGYLVAYPAWP 52 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Confidence 688899998888877766665555
No 297
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=27.98 E-value=1.4e+02 Score=22.81 Aligned_cols=12 Identities=25% Similarity=1.149 Sum_probs=8.9
Q ss_pred HHhhcccchhHH
Q psy168 77 MILFLPESPTWL 88 (130)
Q Consensus 77 ~~~~~pes~~~~ 88 (130)
.-+++|+-|.|.
T Consensus 118 ~~~WfP~vP~Wv 129 (462)
T COG1113 118 LQFWFPDVPQWV 129 (462)
T ss_pred HHHhcCCCcHHH
Confidence 447788888884
No 298
>PF07556 DUF1538: Protein of unknown function (DUF1538); InterPro: IPR011435 This family of protenis of unknown function contains several conserved glycines and phenylalanines.
Probab=26.91 E-value=2.1e+02 Score=19.38 Aligned_cols=64 Identities=17% Similarity=0.071 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhcccchhhhhhhh---ccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-hhHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGE---VCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-DWRTTTLIS 67 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e---~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~wr~~~~~~ 67 (130)
+..=|+.|+......|...++..+ .++.+.+ +..-.+..+.+.|..++-.+.... +|+..+++.
T Consensus 66 ~~~gf~lGf~~t~AEPal~vL~~qve~vs~G~i~-~~~l~~~vaiGVg~~i~lg~lRIi~g~~l~~~l~ 133 (212)
T PF07556_consen 66 LLFGFVLGFLVTIAEPALRVLADQVEEVSGGSIP-KSVLILAVAIGVGIFIALGMLRIIFGIPLWYFLI 133 (212)
T ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHhCcCCcc-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 445678888888888877776643 3333333 333444555555555554443333 665544443
No 299
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=26.78 E-value=2e+02 Score=19.08 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=17.6
Q ss_pred hhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHH
Q psy168 25 GEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTL 65 (130)
Q Consensus 25 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~wr~~~~ 65 (130)
....+.+.+++... .....+....+........+|.....
T Consensus 159 ~~~~~~~~~at~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 198 (240)
T PF01925_consen 159 FGLDPKKARATSAF-FFFFSSVAALISFLILGDVDWPMLLL 198 (240)
T ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 34444444443333 33344444444444444447765443
No 300
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.44 E-value=2.2e+02 Score=23.00 Aligned_cols=43 Identities=12% Similarity=-0.140 Sum_probs=21.5
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHh
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG 46 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~ 46 (130)
++-|+.||=.--.+|.=..+-+-.-.-+.+|...+++.++..+
T Consensus 42 ~~d~~~~~r~e~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (697)
T PF09726_consen 42 LADFMLEFRFEYLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAF 84 (697)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3445555555545554322223333447777776665554433
No 301
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=25.43 E-value=1.3e+02 Score=16.67 Aligned_cols=35 Identities=26% Similarity=0.152 Sum_probs=20.2
Q ss_pred HHHHhHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHH
Q psy168 42 VSGNGGALGIFFLNAIT--DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 42 ~~~~~g~~~~~~~~~~~--~wr~~~~~~~~~~~~~~~ 76 (130)
++..++.++...++... ||...|++.+-.++..++
T Consensus 20 vsfg~~~lf~~~Ln~~~~~GfPlgfw~aaQGsi~~fv 56 (77)
T TIGR03647 20 VSFGAGILFADELNSFTFFGFPLGFWFAQQGSIYVFV 56 (77)
T ss_pred HHHhHHHHHHHHHcCCeeCCCChHHHHHHhhHHHHHH
Confidence 34445555555554433 898888887544444443
No 302
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=25.24 E-value=5e+02 Score=23.24 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy168 59 DWRTTTLISSVVPILAFAMI 78 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~~ 78 (130)
+|+..++..++++++.++..
T Consensus 196 sw~Lalv~l~~~pl~~~~~~ 215 (1466)
T PTZ00265 196 NARLTLCITCVFPLIYICGV 215 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88888776655555444433
No 303
>KOG0055|consensus
Probab=25.08 E-value=4.7e+02 Score=22.94 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHH
Q psy168 43 SGNGGALGIFFLNAIT-DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 43 ~~~~g~~~~~~~~~~~-~wr~~~~~~~~~~~~~~~ 76 (130)
...++.+++.....+. +|+...+.....+++++.
T Consensus 153 i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~ 187 (1228)
T KOG0055|consen 153 IQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIA 187 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 999988876655555443
No 304
>PF14003 YlbE: YlbE-like protein
Probab=24.72 E-value=1.1e+02 Score=16.50 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=11.0
Q ss_pred hhcccchhHHHhcCChHH
Q psy168 79 LFLPESPTWLIYKGRMVD 96 (130)
Q Consensus 79 ~~~pes~~~~~~~~~~~~ 96 (130)
-++.+-|.|+..-.+..+
T Consensus 6 ~fiR~~P~WYR~LsR~P~ 23 (65)
T PF14003_consen 6 QFIREQPIWYRILSRNPE 23 (65)
T ss_pred HHHHHCcHHHHHHccCHH
Confidence 356778888855444433
No 305
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=24.66 E-value=1.9e+02 Score=18.10 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=15.3
Q ss_pred hhhccCCcchhHHHHHHHHH
Q psy168 24 LGEVCEPRIRGSLTLLSGVS 43 (130)
Q Consensus 24 ~~e~~~~~~r~~~~~~~~~~ 43 (130)
+.|++|+..|....+.+...
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~ 79 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTT 79 (137)
T ss_pred HhccCCHHHHHHHHHHHHHH
Confidence 36899999998777766544
No 306
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=24.42 E-value=1.5e+02 Score=18.26 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccc
Q psy168 59 DWRTTTLISSVVPILAFAMILFLPES 84 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~~~~~~pes 84 (130)
-||....+.++...+.+..++.-|++
T Consensus 29 RWRiiL~v~svct~v~A~~wL~Dp~t 54 (125)
T PF09771_consen 29 RWRIILVVVSVCTAVGAWHWLMDPET 54 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 56666665555444444444444443
No 307
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.33 E-value=1.1e+02 Score=16.93 Aligned_cols=7 Identities=29% Similarity=0.212 Sum_probs=2.7
Q ss_pred HHHHHHh
Q psy168 98 EKSLRWL 104 (130)
Q Consensus 98 ~~~l~~~ 104 (130)
.+.++.+
T Consensus 41 ~~~L~~L 47 (75)
T TIGR02976 41 QALLQEL 47 (75)
T ss_pred HHHHHHH
Confidence 3334433
No 308
>PLN02453 complex I subunit
Probab=24.10 E-value=1.7e+02 Score=17.34 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHH-HHhhcccch
Q psy168 59 DWRTTTLISSVVPILAFA-MILFLPESP 85 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~-~~~~~pes~ 85 (130)
+|...+++....+++++. .+-+-|++.
T Consensus 60 dWE~p~Y~~~~~t~vil~Vgl~aKPDts 87 (105)
T PLN02453 60 DWELPCYITSFLTIVILGVGLNAKPDTR 87 (105)
T ss_pred cchhhHHHHHHHHHHHHheeeeccCCCc
Confidence 899888888777766654 777788875
No 309
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.12 E-value=2e+02 Score=19.18 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=19.3
Q ss_pred HhcCChHHHHHHHHHhhCCCCcchHHHHH
Q psy168 89 IYKGRMVDAEKSLRWLRGWSKKDKVMVEF 117 (130)
Q Consensus 89 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 117 (130)
..+|+.++|.+.++++-+.++......+.
T Consensus 122 m~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 122 MENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 35788899999999887754443334333
No 310
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=22.69 E-value=3.6e+02 Score=20.66 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=35.4
Q ss_pred hhhhcccchhhhhhhhccCC-cchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy168 11 AGMGFCEGPIMSYLGEVCEP-RIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPIL 73 (130)
Q Consensus 11 ~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~ 73 (130)
+.....+..--..+.|.+|. ++|+...+-++...++.+++...+...+ ||.....+.-++.++
T Consensus 278 ~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 278 ISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333333445566554 6677777777777666665555554333 888776665444333
No 311
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.51 E-value=1.9e+02 Score=17.00 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=6.9
Q ss_pred HHHhcCChHHHHHHHHHh
Q psy168 87 WLIYKGRMVDAEKSLRWL 104 (130)
Q Consensus 87 ~~~~~~~~~~a~~~l~~~ 104 (130)
+...+.+.++.++.+.++
T Consensus 29 ~~~l~~q~~~~~~e~~~l 46 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKL 46 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444333333
No 312
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.40 E-value=2.1e+02 Score=20.33 Aligned_cols=35 Identities=6% Similarity=0.183 Sum_probs=17.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q psy168 47 GALGIFFLNAITDWRTTTLISSVVPILAFAMILFL 81 (130)
Q Consensus 47 g~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 81 (130)
|++.+...+.+..|-+.-++..++.+++.+++.|+
T Consensus 248 gtAAtaA~aaF~Pcgiaalvllil~vvliiLYiWl 282 (295)
T TIGR01478 248 ERAASAATSTFLPYGIAALVLIILTVVLIILYIWL 282 (295)
T ss_pred chHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444456555555555555555555443
No 313
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.24 E-value=2.4e+02 Score=18.23 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHH
Q psy168 59 DWRTTTLISSVV 70 (130)
Q Consensus 59 ~wr~~~~~~~~~ 70 (130)
.|...-.+.++.
T Consensus 50 ~~NllGVil~~~ 61 (165)
T PF11286_consen 50 HWNLLGVILGLL 61 (165)
T ss_pred eeeHHHHHHHHH
Confidence 455544444433
No 314
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=21.18 E-value=1.7e+02 Score=16.49 Aligned_cols=40 Identities=8% Similarity=-0.205 Sum_probs=22.6
Q ss_pred ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
..|+.+..+.|.--.... .+.......+|+++|.......
T Consensus 11 yTplLP~M~~~~~ls~~~---ag~lasaNy~GYL~GAl~~~~~ 50 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQ---AGWLASANYLGYLVGALLASRL 50 (85)
T ss_pred HHhHhHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666664333322 3555666666777777665554
No 315
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=20.88 E-value=93 Score=24.46 Aligned_cols=49 Identities=14% Similarity=-0.074 Sum_probs=31.3
Q ss_pred HHHhhhhcccchhhhhhhhccCCcchhHHHHHH-HHHHHhHHHHHHHhhh
Q psy168 8 MLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLS-GVSGNGGALGIFFLNA 56 (130)
Q Consensus 8 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~ 56 (130)
+..+..+.........+-...|+++|..++++. .+.-.+|.+-+|++-+
T Consensus 527 ~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG 576 (633)
T TIGR00805 527 PLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFG 576 (633)
T ss_pred HHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHh
Confidence 333333433444445556779999999999986 4444557777776644
No 316
>PTZ00370 STEVOR; Provisional
Probab=20.88 E-value=2.2e+02 Score=20.27 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q psy168 47 GALGIFFLNAITDWRTTTLISSVVPILAFAMILFL 81 (130)
Q Consensus 47 g~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 81 (130)
|++.+...+.+..|-+.-++..++.+++.+++.|+
T Consensus 244 gtAAtaAsaaF~Pygiaalvllil~vvliilYiwl 278 (296)
T PTZ00370 244 GTAASAASSAFYPYGIAALVLLILAVVLIILYIWL 278 (296)
T ss_pred chHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555443
No 317
>KOG2563|consensus
Probab=20.80 E-value=4e+02 Score=20.55 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhh
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAI 57 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 57 (130)
+++.-+..|++.|.........---+.+...-+...|.......++..++..+.+.
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 45566777888887776654444344454444334444333333333444444333
No 318
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=20.12 E-value=3.9e+02 Score=20.10 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----------hhH--HHHHHHHHHH
Q psy168 4 LGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----------DWR--TTTLISSVVP 71 (130)
Q Consensus 4 ~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------~wr--~~~~~~~~~~ 71 (130)
+.-++.|++.+..+.....+.+. +|++. +..+..+.+++.+++.++.-.. .++ ..|.+..++.
T Consensus 111 ~~v~~~g~~~~~~q~s~~gla~~-fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~ 185 (437)
T TIGR00939 111 ASVVIINSGMALLQGSLFGLAGV-FPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQ 185 (437)
T ss_pred HHHHHHHhhhhhhcccchhhccc-CCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHH
Confidence 44567788888777777777764 55433 3334444444444444332211 122 2333444445
Q ss_pred HHHHHHHhhcccch
Q psy168 72 ILAFAMILFLPESP 85 (130)
Q Consensus 72 ~~~~~~~~~~pes~ 85 (130)
++..+.+..++.+|
T Consensus 186 l~~i~~~~~l~k~~ 199 (437)
T TIGR00939 186 LICIVCYLLLPKLP 199 (437)
T ss_pred HHHHHHHHHHhcCH
Confidence 55555666677766
No 319
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=20.09 E-value=2.2e+02 Score=19.24 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH--HHHhhcccc
Q psy168 61 RTTTLISSVVPILAF--AMILFLPES 84 (130)
Q Consensus 61 r~~~~~~~~~~~~~~--~~~~~~pes 84 (130)
-|+|++...+.+-.+ +...++||.
T Consensus 28 YWlfIif~Fp~iG~VaYfvav~LPEl 53 (251)
T COG4700 28 YWLFIIFCFPVIGCVAYFVAVMLPEL 53 (251)
T ss_pred HHHHHHHHhcccchhhHHHHHhhhHh
Confidence 355555443333222 234567875
No 320
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=20.05 E-value=1.5e+02 Score=15.46 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHH----HHHHHhhcccch
Q psy168 59 DWRTTTLISSVVPIL----AFAMILFLPESP 85 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~----~~~~~~~~pes~ 85 (130)
-+|..|.+..+++.. -+++++.+|+.|
T Consensus 30 ~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 30 LVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 346666665543322 233556667654
Done!