Query psy168
Match_columns 130
No_of_seqs 114 out of 1664
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 22:24:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 1.2E-18 4.2E-23 125.2 10.1 106 2-107 129-246 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.1 3.7E-11 1.3E-15 85.1 5.2 86 2-87 122-213 (451)
3 3o7q_A L-fucose-proton symport 99.1 3.8E-10 1.3E-14 79.7 9.4 85 2-86 120-236 (438)
4 2gfp_A EMRD, multidrug resista 99.0 3.5E-10 1.2E-14 78.6 3.6 86 2-87 91-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 98.9 1.3E-08 4.4E-13 73.0 9.6 75 2-76 111-191 (491)
6 2xut_A Proton/peptide symporte 98.7 1E-07 3.6E-12 68.9 9.0 77 2-78 112-195 (524)
7 4gc0_A D-xylose-proton symport 98.3 3.9E-06 1.3E-10 60.1 8.5 69 16-84 387-466 (491)
8 1pw4_A Glycerol-3-phosphate tr 98.1 1.5E-05 5.2E-10 56.2 8.3 76 3-78 350-430 (451)
9 4aps_A DI-OR tripeptide H+ sym 98.1 9.8E-06 3.4E-10 58.0 7.0 81 3-83 390-474 (491)
10 2xut_A Proton/peptide symporte 97.9 2.8E-05 9.7E-10 56.1 6.2 56 3-58 409-464 (524)
11 2cfq_A Lactose permease; trans 97.7 2.2E-05 7.4E-10 55.5 3.5 80 6-85 319-404 (417)
12 2gfp_A EMRD, multidrug resista 96.6 0.0018 6.1E-08 44.6 4.0 63 3-66 295-361 (375)
13 3o7q_A L-fucose-proton symport 96.4 0.0093 3.2E-07 41.7 6.6 67 5-73 353-424 (438)
14 2cfq_A Lactose permease; trans 95.9 0.00024 8.1E-09 50.2 -3.9 78 6-83 107-189 (417)
15 2fyu_K Ubiquinol-cytochrome C 26.9 66 0.0023 16.0 4.2 31 31-61 9-39 (56)
16 4ev6_A Magnesium transport pro 25.0 51 0.0017 22.5 2.6 18 59-76 310-327 (339)
17 2iub_A CORA, divalent cation t 21.7 80 0.0027 21.8 3.1 18 59-76 334-351 (363)
18 3ukm_A Potassium channel subfa 21.6 1.9E+02 0.0065 19.4 5.5 12 77-88 29-40 (280)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.78 E-value=1.2e-18 Score=125.15 Aligned_cols=106 Identities=26% Similarity=0.454 Sum_probs=96.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh------------hhHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT------------DWRTTTLISSV 69 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------~wr~~~~~~~~ 69 (130)
++++|+++|++.|+..+..+.+++|++|++.|++..++.+.++..|.++++.++... .||+.+.+..+
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence 678999999999999999999999999999999999999999999999988876543 68888888888
Q ss_pred HHHHHHHHHhhcccchhHHHhcCChHHHHHHHHHhhCC
Q psy168 70 VPILAFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGW 107 (130)
Q Consensus 70 ~~~~~~~~~~~~pes~~~~~~~~~~~~a~~~l~~~~~~ 107 (130)
+.++..+..++.||||+|+..+++.+++++.+++..+.
T Consensus 209 ~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 209 PALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 88888888899999999999999999999999887664
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.15 E-value=3.7e-11 Score=85.14 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=75.8
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h-hHHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D-WRTTTLISSVVPILAFA 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-wr~~~~~~~~~~~~~~~ 76 (130)
++++|++.|++.+...+....+++|++|+++|++..++.+.+..+|..+++.++... + ||+.|++.+++.++..+
T Consensus 122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~ 201 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 201 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999887654 7 99999998887777655
Q ss_pred -HHhhcccchhH
Q psy168 77 -MILFLPESPTW 87 (130)
Q Consensus 77 -~~~~~pes~~~ 87 (130)
.+++.||+|+.
T Consensus 202 ~~~~~~~~~~~~ 213 (451)
T 1pw4_A 202 FAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHCCCSSTT
T ss_pred HHHhhccCCHhh
Confidence 66778888764
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.12 E-value=3.8e-10 Score=79.69 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=70.9
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh-----h-----------------
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT-----D----------------- 59 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~----------------- 59 (130)
++++|++.|++.|...+....+++|++|+++|++..++.+.+..+|..+++.++... +
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 199 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSA 199 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhh
Confidence 578999999999999999999999999999999999999999999999999886654 2
Q ss_pred --------hHHHHHHHHHHHHHHHHH--Hhhcccchh
Q psy168 60 --------WRTTTLISSVVPILAFAM--ILFLPESPT 86 (130)
Q Consensus 60 --------wr~~~~~~~~~~~~~~~~--~~~~pes~~ 86 (130)
||+.|++.+++..+..+. +...||+++
T Consensus 200 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 999998777666655443 233577654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.96 E-value=3.5e-10 Score=78.59 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=75.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA- 76 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~- 76 (130)
++++|++.|++.+...+....+++|+.|+++|++..+..+....+|..+++.++... +||+.+++.++...+..+
T Consensus 91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 91 LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999987766 899999988877777665
Q ss_pred HHhhcccchhH
Q psy168 77 MILFLPESPTW 87 (130)
Q Consensus 77 ~~~~~pes~~~ 87 (130)
..+..||+++.
T Consensus 171 ~~~~~~~~~~~ 181 (375)
T 2gfp_A 171 MARWMPETRPV 181 (375)
T ss_dssp CCCSSCCCSTT
T ss_pred HHHHCcccCCC
Confidence 66678887653
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.88 E-value=1.3e-08 Score=73.03 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=64.7
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRI--RGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAF 75 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~ 75 (130)
++++|++.|++.|...+....+++|++|+++ |+...+.++.+..+|..+++.++..+ +||+.|++.++...+..
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998 77788888899999999998887765 89999999876665544
Q ss_pred H
Q psy168 76 A 76 (130)
Q Consensus 76 ~ 76 (130)
+
T Consensus 191 ~ 191 (491)
T 4aps_A 191 L 191 (491)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.69 E-value=1e-07 Score=68.89 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHH---HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy168 2 ILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL---SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILA 74 (130)
Q Consensus 2 l~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~ 74 (130)
++++|++.|++.+...+....+++|++|+++|++..+. ++.+..+|..+++.+...+ +||+.|++.++..++.
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999877666 8888999999999886655 8999999887776655
Q ss_pred HHHH
Q psy168 75 FAMI 78 (130)
Q Consensus 75 ~~~~ 78 (130)
.+..
T Consensus 192 ~~~~ 195 (524)
T 2xut_A 192 TVFF 195 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.29 E-value=3.9e-06 Score=60.07 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=51.6
Q ss_pred ccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----------hhHHHHHHHHHHHHHHHH-HHhhcccc
Q psy168 16 CEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----------DWRTTTLISSVVPILAFA-MILFLPES 84 (130)
Q Consensus 16 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------~wr~~~~~~~~~~~~~~~-~~~~~pes 84 (130)
..++.+.+.+|.+|.+.|+++.++......+|..+++.+...+ ++.+.|++.++++++..+ .++++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 4466778999999999999999998887777777765543222 445567777766666655 77889998
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.10 E-value=1.5e-05 Score=56.20 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHh-HHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNG-GALGIFFLNAIT----DWRTTTLISSVVPILAFAM 77 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~~ 77 (130)
.++-++.|++.+...+....++.|..|++.|++..++.+....+ |..+++.+.+.+ +|+..|++.++..++..+.
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 45667888888888888889999999999999999999999999 999998886655 7899998887776665554
Q ss_pred H
Q psy168 78 I 78 (130)
Q Consensus 78 ~ 78 (130)
.
T Consensus 430 ~ 430 (451)
T 1pw4_A 430 L 430 (451)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.08 E-value=9.8e-06 Score=58.02 Aligned_cols=81 Identities=6% Similarity=-0.097 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH-HH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFA-MI 78 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~-~~ 78 (130)
.++-++.|++.+...+....++.|..|++.|+...++.+....+|..+++.+.... ++.+.++..++..++..+ .+
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999988899999999999999999999999999999999999887666 566677776666666554 44
Q ss_pred hhccc
Q psy168 79 LFLPE 83 (130)
Q Consensus 79 ~~~pe 83 (130)
.+.++
T Consensus 470 ~~~~~ 474 (491)
T 4aps_A 470 FLSKR 474 (491)
T ss_dssp HC---
T ss_pred HHHHH
Confidence 44444
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.87 E-value=2.8e-05 Score=56.13 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT 58 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 58 (130)
+++-++.|++.+...+....+++|..|++.|++..++++....+|..+++.+....
T Consensus 409 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 409 ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999886655
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.72 E-value=2.2e-05 Score=55.50 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=56.9
Q ss_pred HHHHHhhhhcccchhhhhhhhccCCcchhHHHHH-HHHHHHhHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HHh
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLL-SGVSGNGGALGIFFLNAIT----DWRTTTLISSVVPILAFA-MIL 79 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~wr~~~~~~~~~~~~~~~-~~~ 79 (130)
.++.|++.+...+....+++|.+|++.|++..+. ++....+|..+++.+.+.. +++..|.+.++..++..+ .+.
T Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 3445665555556667899999999999998888 4777778888888776654 677788877766666555 344
Q ss_pred hcccch
Q psy168 80 FLPESP 85 (130)
Q Consensus 80 ~~pes~ 85 (130)
..||.+
T Consensus 399 ~~~~~~ 404 (417)
T 2cfq_A 399 TLSGPG 404 (417)
T ss_dssp SSCCSC
T ss_pred hhcCCC
Confidence 456543
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.64 E-value=0.0018 Score=44.62 Aligned_cols=63 Identities=21% Similarity=0.058 Sum_probs=51.7
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----hhHHHHHH
Q psy168 3 LLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----DWRTTTLI 66 (130)
Q Consensus 3 ~~~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~wr~~~~~ 66 (130)
++.-++.|++.+...+....++.|..| ++|++..++.+....+|..+++.+...+ +|+..++.
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 356678899999999999999999998 8999999999999999988888776554 45555544
No 13
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.43 E-value=0.0093 Score=41.73 Aligned_cols=67 Identities=12% Similarity=-0.117 Sum_probs=49.8
Q ss_pred HHHHHHhhhhcccchhhhhhhhccCCcchhHHHHHHHHHHHhHHHHHHHhhhhh----h-hHHHHHHHHHHHHH
Q psy168 5 GTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGNGGALGIFFLNAIT----D-WRTTTLISSVVPIL 73 (130)
Q Consensus 5 ~R~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-wr~~~~~~~~~~~~ 73 (130)
+-++.|++.+...+....+..|..|++ ++...++.. ...+|..+++.+.+.+ + ++..|++.++..++
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 353 ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 347888999988999999989999876 888887766 4557888887776554 5 88888765544333
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.88 E-value=0.00024 Score=50.15 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=42.6
Q ss_pred HHHHHhhhhcccchhhhhhhhccCC--cchhHHHHHHHHHHHhHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHhh
Q psy168 6 TIMLGAGMGFCEGPIMSYLGEVCEP--RIRGSLTLLSGVSGNGGALGIFFLNAIT---DWRTTTLISSVVPILAFAMILF 80 (130)
Q Consensus 6 R~l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~wr~~~~~~~~~~~~~~~~~~~ 80 (130)
+++.|++.|...+.....+.++.+. +.++...+.......+|..+++.++... +||+.|++.+++.++..+..++
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333333344332 3445555666666677777777776554 7999998877665444444444
Q ss_pred ccc
Q psy168 81 LPE 83 (130)
Q Consensus 81 ~pe 83 (130)
.+|
T Consensus 187 ~~~ 189 (417)
T 2cfq_A 187 AKT 189 (417)
T ss_dssp SCC
T ss_pred cCc
Confidence 443
No 15
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=26.90 E-value=66 Score=15.97 Aligned_cols=31 Identities=32% Similarity=0.296 Sum_probs=11.6
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHhhhhhhhH
Q psy168 31 RIRGSLTLLSGVSGNGGALGIFFLNAITDWR 61 (130)
Q Consensus 31 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~wr 61 (130)
+....+..+.-.....|...+..+.++.+||
T Consensus 9 ~~~~~~~~w~psa~~~Gaaa~v~~ly~tdwr 39 (56)
T 2fyu_K 9 RYRQLARNWVPTASLWGAVGAVGLVWATDWR 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhheeeeccHH
Confidence 3333333333333333333333333333444
No 16
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=24.99 E-value=51 Score=22.53 Aligned_cols=18 Identities=0% Similarity=-0.034 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy168 59 DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~ 76 (130)
+|++.|++..++.+++.+
T Consensus 310 ~~~~gy~~~l~~m~~~~~ 327 (339)
T 4ev6_A 310 NNPQGFWLVMALMVVIIM 327 (339)
T ss_dssp SCTTHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHH
Confidence 788777766544444433
No 17
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.74 E-value=80 Score=21.79 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy168 59 DWRTTTLISSVVPILAFA 76 (130)
Q Consensus 59 ~wr~~~~~~~~~~~~~~~ 76 (130)
+|++.|++..++.+++.+
T Consensus 334 ~~~~Gy~~~l~~m~~i~~ 351 (363)
T 2iub_A 334 RWKWGYPVVLAVMGVIAV 351 (363)
T ss_dssp -----CHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHH
Confidence 788877766555444433
No 18
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=21.62 E-value=1.9e+02 Score=19.41 Aligned_cols=12 Identities=17% Similarity=-0.028 Sum_probs=6.1
Q ss_pred HHhhcccchhHH
Q psy168 77 MILFLPESPTWL 88 (130)
Q Consensus 77 ~~~~~pes~~~~ 88 (130)
..+..-|+|.-.
T Consensus 29 ~vF~~LE~p~E~ 40 (280)
T 3ukm_A 29 VVFSSVELPYED 40 (280)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhCccHH
Confidence 444445666543
Done!