RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy168
(130 letters)
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 27.2 bits (60), Expect = 1.8
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 33 RGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFLP 82
GS ++ + G G + + ++D + ++P L FA+I
Sbjct: 382 YGSSFIVMTIIG--GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 27.2 bits (61), Expect = 1.8
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 47 GALGIFFLNAITDWRTTTLISSVVPILAFAMILF 80
+ + F T + SVVP ++ +++
Sbjct: 152 VGISMMF---FVSPNLATFVLSVVPPVSIIAVIY 182
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 26.0 bits (58), Expect = 3.9
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 88 LIYKGRMVDAEKSLRW 103
++ GR VDA+++ R
Sbjct: 188 IMLTGRDVDADEAERI 203
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine
biosynthesis, lyase, pyruvate, sandwich, allosteric
enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1
PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A*
3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A*
1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A*
...
Length = 334
Score = 26.2 bits (57), Expect = 4.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 62 TTTLISSVVPILAFAMILFLPESPTWLIY 90
TT L+ ++VP+L A +S Y
Sbjct: 84 TTLLLKALVPLLKLARDYSGFDSIQSFFY 112
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 26.0 bits (58), Expect = 4.3
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 88 LIYKGRMVDAEKSLRW 103
++ + DAE + +
Sbjct: 171 VVLTADLFDAETAASY 186
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 25.6 bits (57), Expect = 4.6
Identities = 4/16 (25%), Positives = 11/16 (68%)
Query: 88 LIYKGRMVDAEKSLRW 103
+IY+ + +DA + + +
Sbjct: 157 IIYQCQSLDAPRCVDY 172
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 25.6 bits (57), Expect = 4.7
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 88 LIYKGRMVDAEKSLRW 103
++ + AE +L
Sbjct: 171 MLLSAEKLTAEIALHT 186
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 26.0 bits (58), Expect = 5.1
Identities = 7/49 (14%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 32 IRGSLTLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILF 80
+R +++ G + F W+ + ++ + PI++ A+ +
Sbjct: 147 VREGASII-------GLFIMMF---YYSWQLSIILVVLAPIVSIAIRVV 185
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 25.8 bits (57), Expect = 5.1
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 37 TLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILF 80
++ G I F W+ T +I ++ P+L + ++
Sbjct: 188 MFFQAMATFFGGFIIGF---TRGWKLTLVILAISPVLGLSAGIW 228
Score = 25.8 bits (57), Expect = 5.8
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 37 TLLSGVSGNGGALGIFFLNAITDWRTTTLISSVVPILAFAMILFL 81
+ ++ G + I I W+ T L+ ++VPI+A A ++ +
Sbjct: 831 VIFQNIANLGTGIIISL---IYGWQLTLLLLAIVPIIAIAGVVEM 872
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 25.6 bits (57), Expect = 5.3
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 88 LIYKGRMVDAEKSLRW 103
+ DA+ + R+
Sbjct: 168 AVLTSSDFDADLAERY 183
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 25.6 bits (57), Expect = 5.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 88 LIYKGRMVDAEKSLRW 103
L++ GR DAE++L
Sbjct: 179 LVFSGRFFDAEEALAL 194
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 25.6 bits (57), Expect = 5.6
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 88 LIYKGRMVDAEKSLRW 103
L+ +G++ +E++LR
Sbjct: 165 LLLEGKLFTSEEALRL 180
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 25.3 bits (56), Expect = 5.9
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 88 LIYKGRMVDAEKSLRW 103
+ G+ +DA +L +
Sbjct: 172 FLLTGQELDARTALDY 187
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 25.5 bits (56), Expect = 6.0
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 88 LIYKGRMVDAEKSLRW 103
++ +G + AE+ L
Sbjct: 204 IMLEGNLYSAEQLLGM 219
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 25.6 bits (57), Expect = 6.1
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 88 LIYKGRMVDAEKSLRW 103
LI+ R++D +++
Sbjct: 169 LIFSARVLDGKEAKAV 184
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 25.5 bits (57), Expect = 6.3
Identities = 2/16 (12%), Positives = 7/16 (43%)
Query: 88 LIYKGRMVDAEKSLRW 103
+ G + +++L
Sbjct: 166 MNITGETITPQEALEI 181
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 25.3 bits (56), Expect = 6.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 88 LIYKGRMVDAEKSLRW 103
L+ G V A ++ R
Sbjct: 178 LLMLGDTVRAPEAERI 193
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 25.1 bits (56), Expect = 7.4
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 88 LIYKGRMVDAEKSLRW 103
LIY GR + A+++ +
Sbjct: 166 LIYTGRRISAQEAKEY 181
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 25.2 bits (56), Expect = 7.7
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 49 LGIFFLNAITDWRTTTLISSVVPILAFAMILF 80
+ + D + T + P + +F
Sbjct: 150 IIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 24.8 bits (55), Expect = 8.7
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 88 LIYKGRMVDAEKSLRW 103
+IY G ++
Sbjct: 154 MIYTGENYRGKELAER 169
>3sto_A Serine protease inhibitor; serpin fold, hydrolase inhibitor; 2.41A
{Schistosoma haematobium}
Length = 406
Score = 24.9 bits (55), Expect = 9.2
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 74 AFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVE 123
F ++ LP L +++ K L K+ V + + ++
Sbjct: 252 RFTFVIVLPLEKWSLNGATELLNGNKVLSEYVKNLKETTVSLRLPKFTLK 301
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 24.8 bits (55), Expect = 9.5
Identities = 2/16 (12%), Positives = 7/16 (43%)
Query: 88 LIYKGRMVDAEKSLRW 103
G + A++++
Sbjct: 186 YALTGTRISAQRAVEL 201
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 24.8 bits (55), Expect = 9.6
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 88 LIYKGRMVDAEKSLRW 103
++ GR+ A + +
Sbjct: 170 MMLTGRVYSAAEGVVH 185
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 24.8 bits (55), Expect = 9.6
Identities = 2/16 (12%), Positives = 8/16 (50%)
Query: 88 LIYKGRMVDAEKSLRW 103
++ + ++L+W
Sbjct: 162 MMLTSTPITGAEALKW 177
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 24.8 bits (55), Expect = 9.6
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 88 LIYKGRMVDAEKSLRW 103
++ R DA+++ R
Sbjct: 159 ILGSARAFDADEARRI 174
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 24.8 bits (55), Expect = 9.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 88 LIYKGRMVDAEKSLRW 103
LI GR +DA ++ R
Sbjct: 179 LILTGRTMDAAEAERS 194
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 25.0 bits (54), Expect = 9.9
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 88 LIYKGRMVDAEKSLRW 103
V E++ W
Sbjct: 198 FCTVVEGVRGERAKAW 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.457
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,052,039
Number of extensions: 109209
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 57
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)