RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy168
         (130 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 28.6 bits (62), Expect = 0.24
 Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 1   MILLGTIMLGAGMGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSGN--GGALGIFFLNAIT 58
            +++   +    + F       Y+    E R   ++ L+                   + 
Sbjct: 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373

Query: 59  D---WRTTTLISSVVPILAFAMILFLPESP 85
           +   ++   L+  +V +    + +F    P
Sbjct: 374 ESIGFQGAYLVLGLVALGFTLISVFTLSGP 403


>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1
           [TaxId: 28214]}
          Length = 351

 Score = 26.5 bits (58), Expect = 0.93
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 89  IYKGRMVDAEKSLRWLRGWSKKDKVM 114
           +  G+ V A   L  L  W+K D ++
Sbjct: 99  VATGKPVYATCLLNMLDKWAKADALL 124


>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 325

 Score = 25.7 bits (56), Expect = 2.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 62  TTTLISSVVPILAFAMILFLPESPTWLIY 90
           TT L+ ++VP+L  A      +S     Y
Sbjct: 80  TTLLLKALVPLLKLARDYSGFDSIQSFFY 108


>g1hle.1 e.1.1.1 (A:,B:) Elastase inhibitor {Horse (Equus caballus)
           [TaxId: 9796]}
          Length = 375

 Score = 25.6 bits (55), Expect = 2.5
 Identities = 10/56 (17%), Positives = 24/56 (42%)

Query: 74  AFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVEWWMLRN 129
             +MI+ LP+           ++ + +L  LR W+K + + +    + +  + L  
Sbjct: 225 ELSMIILLPDDIEDESTGLEKIEKQLTLDKLREWTKPENLYLAEVNVHLPRFKLEE 280


>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 426

 Score = 24.0 bits (51), Expect = 7.8
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 74  AFAMILFLPESPTWLIYKGRMVDAEKSLRWLRGWSKKDKVMVEFEQLKVE 123
              M+L LP+    L    + +  E    WL    ++  + V   + ++E
Sbjct: 273 DITMVLILPKPEKSLAKVEKELTPEVLQEWLDEL-EEMMLCVHMPRFRIE 321


>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 551

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 11/48 (22%)

Query: 10  GAG----MGFCEGPIMSYLGEVCEPRIRGSLTLLSGVSG--NGGALGI 51
           G+G    MG+ EG  M YL   C    +      +GV G  NG    I
Sbjct: 261 GSGSEVQMGYAEGKSMLYLEARCIYITKA-----AGVQGLQNGSVSCI 303


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.457 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,323
Number of extensions: 20247
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 11
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.9 bits)