BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1680
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XI72|IF4H_RAT Eukaryotic translation initiation factor 4H OS=Rattus norvegicus
GN=Eif4h PE=1 SV=1
Length = 248
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQ 122
+V++L++AL DG + D +R+DIA+G++ D G + G GMGG++ + +
Sbjct: 91 EVDSLKEALTYDGALLGD-RSLRVDIAEGRKQDKGG--FGFRKGGPDDRGMGGSR--EPR 145
Query: 123 GGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGP 165
GG +RD+ + R GG R P G R +GP
Sbjct: 146 GGWDSRDDFSSGYRDDFLGGRGGSRPGDRRAGPPMGSRFRDGP 188
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 183 TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
++ SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 66 SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>sp|Q9WUK2|IF4H_MOUSE Eukaryotic translation initiation factor 4H OS=Mus musculus
GN=Eif4h PE=1 SV=3
Length = 248
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQ 122
+V++L++AL DG + D +R+DIA+G++ D G + G GMGG++ + +
Sbjct: 91 EVDSLKEALTYDGALLGD-RSLRVDIAEGRKQDKGG--FGFRKGGPDDRGMGGSR--ESR 145
Query: 123 GGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGP 165
GG +RD+ + R GG R P G R +GP
Sbjct: 146 GGWDSRDDFNSGYRDDFLGGRGGSRPGDRRAGPPMGSRFRDGP 188
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 183 TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
++ SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 66 SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>sp|Q15056|IF4H_HUMAN Eukaryotic translation initiation factor 4H OS=Homo sapiens
GN=EIF4H PE=1 SV=5
Length = 248
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQ 122
+V++L++AL DG + D +R+DIA+G++ D G + G GMG ++ + +
Sbjct: 91 EVDSLKEALTYDGALLGD-RSLRVDIAEGRKQDKGG--FGFRKGGPDDRGMGSSR--ESR 145
Query: 123 GGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGP 165
GG +RD+ + R GG R P G R +GP
Sbjct: 146 GGWDSRDDFNSGFRDDFLGGRGGSRPGDRRTGPPMGSRFRDGP 188
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 183 TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
++ SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 66 SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>sp|Q5RBR8|IF4H_PONAB Eukaryotic translation initiation factor 4H OS=Pongo abelii
GN=EIF4H PE=2 SV=1
Length = 228
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 2 GRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEF 61
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 30 SRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEF 89
Query: 62 VDVENLRQALLKDGRITVDGLQVRLDIADGKRND 95
+V++L++AL DG + D +R+DIA+G++ D
Sbjct: 90 DEVDSLKEALTYDGALLGD-RSLRVDIAEGRKQD 122
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 183 TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
++ SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 66 SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>sp|Q1JPH6|IF4H_BOVIN Eukaryotic translation initiation factor 4H OS=Bos taurus GN=EIF4H
PE=2 SV=1
Length = 228
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 2 GRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEF 61
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 30 SRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEF 89
Query: 62 VDVENLRQALLKDGRITVDGLQVRLDIADGKRND 95
+V++L++AL DG + D +R+DIA+G++ D
Sbjct: 90 DEVDSLKEALTYDGALLGD-RSLRVDIAEGRKQD 122
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 183 TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
++ SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 66 SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>sp|O14369|SCE3_SCHPO Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1
Length = 388
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 1 YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVE 60
Y R+ +P+EPP+TA VGNL +T+ D+ FF E + S+RLV D T+R +GF YVE
Sbjct: 81 YQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGEG-VTSIRLVIDPLTERSRGFGYVE 139
Query: 61 FVDVENLRQALLKDGRITVDGLQVRLDIADGKRN 94
F + L AL G + G VR+ +A+ +R+
Sbjct: 140 FETADTLSAALALSGEDLM-GRPVRITVAEPRRS 172
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG--------RITV 224
+ S+RLV D T+R +GF YVEF + L AL G RITV
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITV 166
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
EP + +VGNLP + G +E+ F E K+V R+V D+ET R +GF +V DV+ L +
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 70 ALLKDGRITVDGLQVRLDIADGK 92
A+ ++G +R+++A+ +
Sbjct: 301 AISALDGQNLEGRAIRVNVAEER 323
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
+V R+V D+ET R +GF +V DV+ L +A+
Sbjct: 270 VVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 4 NQKTLPTEPPY----TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCY 58
Q P+ P T F NL I + DVE FF E ++V VR +++ F+GF +
Sbjct: 283 KQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGH 342
Query: 59 VEFVDVENLRQALLKDGRITVDGLQVRLDIAD--GKRNDNKGGFNNKQN-RGGGSGGMGG 115
VEF E ++AL GR + G ++RLDIA G+R + N R GG GG
Sbjct: 343 VEFASSEEAQKALEFHGRPLL-GREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEK 401
Query: 116 NKYNQHQGGSFNRDNMRNNSRGGGASSG 143
+ + S + D+++N R +S G
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCG 429
>sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B OS=Mus musculus
GN=Eif4b PE=1 SV=1
Length = 611
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKE-TDRFKGFCYVEFVDVEN 66
LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ DR KGF Y EF + +
Sbjct: 90 LPKSPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEF-EDLD 148
Query: 67 LRQALLKDGRITVDGLQVRLDIAD 90
+ L ++ ++R+D+AD
Sbjct: 149 SLLSALSLNEESLGNRRIRVDVAD 172
>sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens
GN=EIF4B PE=1 SV=2
Length = 611
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKE-TDRFKGFCYVEFVDVEN 66
LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF + +
Sbjct: 90 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEF-EDLD 148
Query: 67 LRQALLKDGRITVDGLQVRLDIAD 90
+ L ++ ++R+D+AD
Sbjct: 149 SLLSALSLNEESLGNRRIRVDVAD 172
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 9 PTEPP------YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEF 61
P PP Y +VGN+P GI +E+ F E K+VS R+V D+ET R +GF +V
Sbjct: 219 PERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTM 278
Query: 62 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDN 96
+ A+ ++DG +R+++A+ + N
Sbjct: 279 ASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVGNLP + + R F + +V + ++ +++TD+ +GF +V VE +A+
Sbjct: 139 FVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYN 198
Query: 76 RITVDG 81
R V+G
Sbjct: 199 RYDVNG 204
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
+ V +VKD+ET R +GF +V F ++++ + A++ +VDG
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 74
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
+ V +VKD+ET R +GF +V F ++++ + A++ +VDG
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 74
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
+ V +VKD+ET R +GF +V F ++++ + A++ +VDG
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 74
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
+ V +VKD+ET R +GF +V F ++++ + A++ +VDG
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 74
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
+ V +VKD+ET R +GF +V F ++++ + A++ +VDG
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 74
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
EP +VGNLP + +E+ F E K+VS R+V D+ET R +GF +V +
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 70 ALLKDGRITVDGLQVRLDIAD 90
A+ T+DG VR+++A+
Sbjct: 206 AIAALDGQTLDGRAVRVNVAE 226
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 10 TEPPYTA--FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVEN 66
+EPP A FVGNLP + + F +V + ++ ++ETDR +GF +V VE
Sbjct: 49 SEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 108
Query: 67 LRQALLKDGRITVDGLQVRLDIA 89
+A+ +DG Q+ ++ A
Sbjct: 109 AEKAVELLNGYDMDGRQLTVNKA 131
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 9 PTEPPYTAFVGNLP-NGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
P+EP T F+GNL N E F ++VSVR+ ET++ KGF YV+F ++E+
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 68 RQALLKDGRITVDGLQVRLDIADGKRNDN 96
++AL +D VRLD + + N++
Sbjct: 322 KKALDALQGEYIDNRPVRLDFSSPRPNND 350
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 53/218 (24%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQK-LVSVRLVKDKETDRFKGFCYVEF 61
+ QK TE P T FVG L I +++ F ++ R++ ++ TDR +G+ YV+F
Sbjct: 157 KKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDF 216
Query: 62 VDVENLRQALLKDGRITVDGLQVRLDIADGK---RNDNKGGFNNKQNRGGGSGGMGGNKY 118
+ +A+ + +DG + D++ K ND F + + + +G +
Sbjct: 217 ENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSF 276
Query: 119 NQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMV 178
N +RD + F F++ GE
Sbjct: 277 NA------DRDAI--------------FELFAKHGE------------------------ 292
Query: 179 TEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
+VSVR+ ET++ KGF YV+F ++E+ ++AL
Sbjct: 293 -----VVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
+P Y +VGN+P I +E+ F E K+VS R+V D+E+ R +GF +V + +
Sbjct: 188 QPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSE 247
Query: 70 ALLKDGRITVDGLQVRLDIADGKRNDN 96
A+ T+DG +R++ A+ + N
Sbjct: 248 AIANLDGQTLDGRTIRVNAAEERPRRN 274
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQAL 71
FVGNLP I + + F + +V + ++ ++ETDR +GF +V VE +A+
Sbjct: 100 FVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F+GNL + Q V+ FF E +++SVRL E +GF +V+F E ++AL
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLA-THEDGSSRGFGHVQFASSEEAKKALEL 370
Query: 74 DGRITVDGLQVRLDIADGK-------RNDNKGGFNNKQNRG 107
G +DG VRLD+A + RND G F KQNRG
Sbjct: 371 HG-CDLDGRPVRLDLAHERGAYTPHSRNDT-GSF-QKQNRG 408
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 59/207 (28%), Positives = 86/207 (41%), Gaps = 42/207 (20%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T FVGNLP + Q V++FF E ++V +R E F+GF +VEF E ++AL
Sbjct: 450 TLFVGNLPYNVEQEQVKQFFQEAGEVVDIRF-STFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRN 133
G + G VRLD+A + RG + G G R+
Sbjct: 509 AGH-DLMGRPVRLDLA--------------RERGAYTPGSG-----------------RD 536
Query: 134 NSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDK 193
NS + G F +G + NS+ +H E+T V + KD
Sbjct: 537 NSSFKKPAQSSGNTIFIKGFDTSLDIHQIR-----NSLEEHFGSCGEIT---RVSIPKDY 588
Query: 194 ETDRFKGFCYVEFVDVENLRQALLKDG 220
ET KG Y++F D +L +A +G
Sbjct: 589 ETGASKGMAYMDFADNGSLSKAYELNG 615
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F GNL I + D+E FF E ++V VRL + FKG+ ++EF E ++AL
Sbjct: 385 TLFAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 74 DGRITVDGLQVRLDIADGK---RNDNKG 98
+G++ + G VRLD+A+ + RN N G
Sbjct: 444 NGKLLL-GRDVRLDLANERGTPRNSNPG 470
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L T+ +E+ F + ++ V +VKD+E+ R +GF +V F + E+ + A++
Sbjct: 9 FVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIA 89
+VDG Q+R+D A
Sbjct: 69 GKSVDGRQIRVDQA 82
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
+ V +VKD+E+ R +GF +V F + E+ + A++ +VDG
Sbjct: 32 VAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDG 74
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F + ++ V +VKD+ET R +GF +V F + E+ + A+
Sbjct: 9 FVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMN 68
Query: 76 RITVDGLQVRLDIADGKRND 95
TVDG Q+R+D A ND
Sbjct: 69 GKTVDGRQIRVDQAGKSSND 88
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
+ V +VKD+ET R +GF +V F + E+ + A+ TVDG
Sbjct: 32 IQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDG 74
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
Y F+G LP+ +T+ D+ FF K+ V ++ D+E + +GF ++ F + E+ + +
Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF-EEESSVEHVT 154
Query: 73 KDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNM 131
+ I ++G QV + A+ + D GG N+ + GG+ G GN+ + H G NM
Sbjct: 155 NERYINLNGKQVEIKKAEPR--DGSGGQNSNNSTVGGAYGKLGNECS-HWGPHHAPINM 210
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 17 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L TQ ++ R+F ++ ++K+ E+ R +GF +V F D N+ +L++G
Sbjct: 10 FVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNH-VLQNG 68
Query: 76 RITVDGLQV 84
T+DG +
Sbjct: 69 PHTLDGRTI 77
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G L + +E+ F + ++ V +VKD+ET R +GF +V F +V++ + A++
Sbjct: 8 FIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMN 67
Query: 76 RITVDGLQVRLDIA 89
+VDG Q+R+D A
Sbjct: 68 GKSVDGRQIRVDQA 81
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 179 TEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
T+ + V +VKD+ET R +GF +V F +V++ + A++ +VDG
Sbjct: 26 TKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDG 73
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLR 68
+EP T FVGNL T+ D+ F + S+RL D ++ R KGF YV F D+++ +
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 69 QALLKDGRITVDGLQVRLDIA 89
+ + +G + G RLD +
Sbjct: 422 KCVEMNGHF-IAGRPCRLDFS 441
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 49/210 (23%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T FVG L + + + F E +V R++ D ++ R KG+ YV+F E + A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRN 133
+G +DG V LD+++ + + + Y Q + G+F D +
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQ-------------------PYAQQRAGNFG-DQLSE 363
Query: 134 NSRG---GGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLV 190
S G S +D S G G + S+RL
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQ-------------------------SIRLP 398
Query: 191 KDKETDRFKGFCYVEFVDVENLRQALLKDG 220
D ++ R KGF YV F D+++ ++ + +G
Sbjct: 399 TDPQSGRLKGFGYVTFSDIDSAKKCVEMNG 428
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>sp|Q4WCH5|NOP12_ASPFU Nucleolar protein 12 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=nop12 PE=3 SV=1
Length = 538
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 24/153 (15%)
Query: 23 NGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 82
N T+G ER + SVR+V+D+ T KGF YV+F D + +ALL DG+ L
Sbjct: 365 NAHTKGSKERASTRGNVESVRVVRDRTTRVGKGFAYVQFYDQVCVEEALLLDGKKFPPML 424
Query: 83 QVRLDIADGKRNDNK--------------GGFNNKQNRGGGSGGMGGNKYNQHQGGSFNR 128
+L + K+ K GF+ Q R G G G + +G R
Sbjct: 425 PRKLRVTRAKKLPKKRDGPETGSHGKALGEGFSTLQGRAGKLFGRAGAAKMKAEG----R 480
Query: 129 DNMRNNS------RGGGASSGGGFNDFSRGGEG 155
++ NS R SS SRG +G
Sbjct: 481 KSISGNSVVFEGNRASEGSSRIKIKTKSRGSKG 513
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 221
SVR+V+D+ T KGF YV+F D + +ALL DG+
Sbjct: 383 SVRVVRDRTTRVGKGFAYVQFYDQVCVEEALLLDGK 418
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G L + +E+ F + +S V +VKD+ET R +GF +V F + ++ + A++
Sbjct: 8 FIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMN 67
Query: 76 RITVDGLQVRLDIA 89
VDG Q+R+D A
Sbjct: 68 GKAVDGRQIRVDQA 81
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
+ V +VKD+ET R +GF +V F + ++ + A++ VDG
Sbjct: 31 ISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDG 73
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
+VGNL G+ +E F EQ K+V R++ D+++ R KGF +V + +++A+
Sbjct: 260 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319
Query: 76 RITVDGLQVRLDIADGK 92
+DG Q+R+ A+ +
Sbjct: 320 GADLDGRQIRVSEAEAR 336
>sp|Q9UUE4|PPIL4_SCHPO Peptidyl-prolyl cis-trans isomerase cyp6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cyp6 PE=1 SV=1
Length = 432
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 12 PPYTAFVGNLPNGITQG-DVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
P FV L N +TQ D+E F K++S ++++DKET + ++EF + E++ +
Sbjct: 242 PENVLFVCKL-NPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Query: 70 ALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRD 129
A K + +D ++ +D + + +N+ ++R S +Y++ G ++R
Sbjct: 301 AYFKMQNVLIDDSRIHVDFSQSVAR-YRQYYNSNRDRKRSSSRSDDREYHRRSDGRYDRS 359
Query: 130 NMRNNSR 136
N R++ R
Sbjct: 360 NYRDDYR 366
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 34/215 (15%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVGNLP + + F V V ++ DK T R +GF +V E + A +
Sbjct: 90 FVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFN 149
Query: 76 RITVDGLQVRLDI--ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRN 133
+DG +R++ A KR ++ G GG GGN + + GG RD
Sbjct: 150 GYEIDGRAIRVNAGPAPAKRENSSFG-----------GGRGGN--SSYGGG---RD---G 190
Query: 134 NSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGL--MVTEVTTLVSVRLVK 191
NS GGA G + +R G N S ++D L + +E +V ++V
Sbjct: 191 NSSFGGARGGRSVDSSNRVYVG----------NLSWGVDDLALKELFSEQGNVVDAKVVY 240
Query: 192 DKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
D+++ R +GF +V + + + A+ + +DG
Sbjct: 241 DRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDG 275
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
+VGNL G+ ++ F EQ +V ++V D+++ R +GF +V + + + A+
Sbjct: 210 YVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLN 269
Query: 76 RITVDGLQVRLDIAD 90
+ +DG +R+ A+
Sbjct: 270 GVDLDGRSIRVSAAE 284
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLR 68
T+P T F+G LP + + +++++F + ++ +R+VKDK T + KG+ ++ F D + +
Sbjct: 103 TDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSK 162
Query: 69 QALLKDGRITVDGLQV--RLDIADGKR 93
A + G G+Q+ R+ I D +R
Sbjct: 163 MAFKEIG--VHRGIQIKDRICIVDIER 187
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ +
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGGFNNKQNRG 107
++DG Q+R+D A +GG RG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGGAFGAHGRG 100
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 34/215 (15%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVGNLP + + F V V ++ DK + R +GF +V E + A +
Sbjct: 91 FVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFN 150
Query: 76 RITVDGLQVRLDI--ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRN 133
+DG +R++ A KR ++ G GG GGN + + GG
Sbjct: 151 GYEIDGRAIRVNAGPAPAKRENSSFG-----------GGRGGN--SSYGGG--------- 188
Query: 134 NSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGL--MVTEVTTLVSVRLVK 191
R G +S GG +RGG N S ++D L + +E +V ++V
Sbjct: 189 --RDGNSSFGG-----ARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVY 241
Query: 192 DKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
D+++ R +GF +V + + + A+ I +DG
Sbjct: 242 DRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDG 276
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
+VGNL G+ ++ F EQ +V ++V D+++ R +GF +V + + + A+
Sbjct: 211 YVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLN 270
Query: 76 RITVDGLQVRLDIAD 90
I +DG +R+ A+
Sbjct: 271 GIDLDGRSIRVSAAE 285
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 13 PYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 71
Y FVG L + +ER F E ++ +++ D+ET R KGF +V F D +++R A+
Sbjct: 7 EYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAI 66
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMN 68
Query: 76 RITVDGLQVRLDIA 89
++DG Q+R+D A
Sbjct: 69 GESLDGRQIRVDHA 82
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKR 93
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKR 93
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMN 68
Query: 76 RITVDGLQVRLDIA 89
++DG Q+R+D A
Sbjct: 69 GESLDGRQIRVDHA 82
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 10 TEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 68
+E Y FVG L ++ER F + +++ +++ D+ET R +GF +V F D ++++
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 69 QALLK------DGR-ITVDGLQ 83
A+ + DGR ITV+ Q
Sbjct: 62 DAIDEMNGKELDGRTITVNEAQ 83
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K 73
T +VGNLP I + +VE F K V + K R G+ +VEF D + A+ +
Sbjct: 8 TVYVGNLPGDIREREVEDLF--SKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 74 DGRITVDGLQVRLDIADGKRNDN 96
DG DG ++R+++A G R +
Sbjct: 66 DG-YDFDGHRLRVELAHGGRRSS 87
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 18 VGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI 77
V NL T+ + F +K S+R+ +++ R KGF ++EF E+ + A+
Sbjct: 419 VNNLSYSATEDSLREVF--EKATSIRIPQNQ--GRAKGFAFIEFSSAEDAKDAMDSCNNT 474
Query: 78 TVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFN-RDNMR-NNS 135
++G +RL+ + G G + Q++ G+ + + +F+ N R
Sbjct: 475 EIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFDGSVNARIVTD 534
Query: 136 RGGGASSGGGFNDFS 150
R GAS G GF DFS
Sbjct: 535 RDTGASKGFGFVDFS 549
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T FV N+P T +++ F K + + KD KG YVEF + + +AL +
Sbjct: 326 TLFVKNIPYSTTVEELQEIFENAKDIRIPTGKDGSN---KGIAYVEFSNEDEANKALEEK 382
Query: 75 GRITVDGLQVRLDIADGKRNDNKG 98
++G + +D G+++ N G
Sbjct: 383 QGAEIEGRSIFVDFT-GEKSQNSG 405
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 38.9 bits (89), Expect = 0.033, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 10 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
++P T FV L T+ ++ F + V R+V D+ET KGF +V+F E+ +
Sbjct: 565 SQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFNSEEDAKA 622
Query: 70 A--LLKDGRITVDGLQVRLDIADGK 92
A ++DG I DG +V LD A K
Sbjct: 623 AKEAMEDGEI--DGNKVTLDWAKPK 645
Score = 30.4 bits (67), Expect = 9.8, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T + NL T+ +E F + + V + KG+ ++EF E+ ++AL
Sbjct: 488 TLVLSNLSYSATKETLEEVFEKATFIKV---PQNPHGKPKGYAFIEFASFEDAKEALNSC 544
Query: 75 GRITVDGLQVRLDI 88
++ ++G +RL++
Sbjct: 545 NKMEIEGRTIRLEL 558
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R ++P T FV L T+ ++ F + V R+V D+ET KGF +V+F
Sbjct: 564 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFN 621
Query: 63 DVENLRQA--LLKDGRITVDGLQVRLDIADGK 92
E+ + A ++DG I DG +V LD A K
Sbjct: 622 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK 651
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 38.5 bits (88), Expect = 0.035, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R ++P T FV L T+ ++ F + V R+V D+ET KGF +V+F
Sbjct: 561 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFN 618
Query: 63 DVENLRQA--LLKDGRITVDGLQVRLDIADGK 92
E+ + A ++DG I DG +V LD A K
Sbjct: 619 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK 648
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T + NL T+ ++ F + + V + + KG+ ++EF E+ ++AL
Sbjct: 487 TLVLSNLSYSATEETLQEVFEKATFIKV---PQNQQGKSKGYAFIEFASFEDAKEALNSC 543
Query: 75 GRITVDGLQVRLDIADGKRNDN 96
++ ++G +RL++ + + N
Sbjct: 544 NKMEIEGRTIRLELQGPRGSPN 565
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 11 EPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
EPP FVG L ++ ++ +F ++ ++ L D +T+ +GFC++ + D E +++
Sbjct: 112 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
Query: 70 AL 71
L
Sbjct: 172 LL 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,663,635
Number of Sequences: 539616
Number of extensions: 5112616
Number of successful extensions: 57204
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 978
Number of HSP's that attempted gapping in prelim test: 21245
Number of HSP's gapped (non-prelim): 17841
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)