Query psy1680
Match_columns 227
No_of_seqs 138 out of 1721
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:25:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.1E-35 1.1E-39 242.4 18.6 159 8-226 102-262 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-33 2.9E-38 237.2 22.9 213 12-227 2-339 (352)
3 TIGR01645 half-pint poly-U bin 100.0 2E-32 4.4E-37 238.3 17.4 169 10-227 104-274 (612)
4 TIGR01622 SF-CC1 splicing fact 100.0 8.9E-31 1.9E-35 227.2 19.0 170 10-227 86-256 (457)
5 KOG0148|consensus 100.0 4.5E-30 9.8E-35 197.6 13.9 165 12-226 61-227 (321)
6 KOG0144|consensus 100.0 2.9E-30 6.2E-35 209.9 10.7 157 8-223 29-189 (510)
7 TIGR01628 PABP-1234 polyadenyl 100.0 2.2E-29 4.8E-34 223.4 17.1 154 15-227 2-157 (562)
8 KOG0145|consensus 100.0 3.9E-28 8.4E-33 186.1 17.6 215 10-227 38-348 (360)
9 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1E-27 2.2E-32 210.7 19.0 182 9-227 171-365 (509)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.2E-27 7E-32 207.5 18.7 187 11-227 293-492 (509)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.5E-27 7.5E-32 209.4 17.3 174 10-227 175-354 (562)
12 KOG0131|consensus 99.9 8.3E-28 1.8E-32 175.2 10.0 160 9-227 5-167 (203)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.7E-26 1E-30 198.2 21.0 187 11-227 273-464 (481)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 1.8E-26 4E-31 200.8 18.3 199 11-227 56-297 (578)
15 KOG0127|consensus 99.9 2.1E-26 4.6E-31 192.2 16.8 212 12-227 116-368 (678)
16 KOG0117|consensus 99.9 8.7E-27 1.9E-31 190.4 12.4 156 10-227 161-321 (506)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.7E-26 1.5E-30 197.2 18.4 157 12-226 1-161 (481)
18 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-24 2.8E-29 188.7 23.0 211 12-227 185-438 (457)
19 KOG0127|consensus 99.9 2.3E-25 5E-30 186.1 14.9 181 12-227 4-186 (678)
20 KOG0109|consensus 99.9 9.2E-25 2E-29 169.9 9.9 136 14-227 3-140 (346)
21 KOG0117|consensus 99.9 1.7E-23 3.7E-28 171.2 15.3 146 11-222 81-231 (506)
22 KOG0147|consensus 99.9 8.2E-25 1.8E-29 183.2 4.4 172 10-227 176-348 (549)
23 KOG0124|consensus 99.9 1.5E-23 3.2E-28 167.9 9.8 165 14-227 114-280 (544)
24 KOG0123|consensus 99.9 6.3E-22 1.4E-26 165.3 14.5 140 14-227 2-143 (369)
25 KOG0110|consensus 99.9 6.7E-22 1.4E-26 170.0 11.6 163 14-227 516-683 (725)
26 KOG0105|consensus 99.9 1.1E-20 2.3E-25 138.4 14.8 168 11-224 4-175 (241)
27 KOG4205|consensus 99.9 6.8E-22 1.5E-26 160.0 8.6 153 12-218 5-158 (311)
28 TIGR01645 half-pint poly-U bin 99.9 6.2E-20 1.3E-24 160.5 21.3 81 12-93 203-285 (612)
29 KOG0146|consensus 99.8 9.8E-21 2.1E-25 146.1 10.0 211 12-225 18-353 (371)
30 KOG0144|consensus 99.8 2E-20 4.3E-25 152.8 12.0 84 11-95 122-209 (510)
31 KOG0123|consensus 99.8 1.9E-19 4.1E-24 150.4 13.3 162 9-226 72-235 (369)
32 PLN03134 glycine-rich RNA-bind 99.8 8.2E-19 1.8E-23 128.6 14.1 86 10-96 31-118 (144)
33 KOG4206|consensus 99.8 7.1E-18 1.5E-22 127.8 16.0 195 9-224 5-208 (221)
34 KOG0148|consensus 99.8 2.9E-19 6.3E-24 138.1 8.5 129 10-227 3-132 (321)
35 KOG1457|consensus 99.8 6E-17 1.3E-21 122.2 16.1 206 12-224 33-273 (284)
36 KOG0147|consensus 99.8 1.4E-17 3.1E-22 140.0 13.3 206 14-227 279-518 (549)
37 KOG4211|consensus 99.7 4.4E-17 9.6E-22 135.5 14.7 160 9-220 6-166 (510)
38 PLN03134 glycine-rich RNA-bind 99.7 6.7E-18 1.5E-22 123.7 7.9 72 154-227 33-104 (144)
39 KOG4212|consensus 99.7 8.2E-16 1.8E-20 126.3 18.4 209 9-222 40-279 (608)
40 KOG1548|consensus 99.7 3.1E-16 6.7E-21 125.2 10.7 193 10-227 131-342 (382)
41 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.8E-16 8.2E-21 131.3 11.9 81 12-93 268-350 (352)
42 KOG0106|consensus 99.7 1E-16 2.2E-21 122.6 7.2 158 14-227 2-161 (216)
43 PF00076 RRM_1: RNA recognitio 99.7 3.5E-16 7.6E-21 100.6 6.7 67 158-227 1-67 (70)
44 KOG0110|consensus 99.6 2.7E-15 5.9E-20 129.7 13.4 200 10-227 382-588 (725)
45 KOG0149|consensus 99.6 3.1E-16 6.6E-21 119.4 6.3 81 10-91 9-90 (247)
46 KOG0121|consensus 99.6 7.1E-16 1.5E-20 106.7 6.5 84 9-93 32-117 (153)
47 KOG0120|consensus 99.6 8.7E-16 1.9E-20 130.6 8.4 183 11-227 287-482 (500)
48 PF00076 RRM_1: RNA recognitio 99.6 2.3E-15 5.1E-20 96.7 8.6 68 16-85 1-70 (70)
49 TIGR01648 hnRNP-R-Q heterogene 99.6 1E-14 2.3E-19 127.7 13.6 134 12-185 232-369 (578)
50 KOG0122|consensus 99.6 2.9E-15 6.2E-20 114.6 8.6 81 11-92 187-269 (270)
51 TIGR01659 sex-lethal sex-letha 99.6 9.7E-15 2.1E-19 121.6 12.5 83 11-94 191-277 (346)
52 PF14259 RRM_6: RNA recognitio 99.6 3.6E-15 7.8E-20 96.0 7.1 67 158-227 1-67 (70)
53 KOG0122|consensus 99.6 7.6E-15 1.7E-19 112.3 8.7 70 154-225 188-257 (270)
54 PF14259 RRM_6: RNA recognitio 99.6 2.3E-14 4.9E-19 92.3 9.5 68 16-85 1-70 (70)
55 COG0724 RNA-binding proteins ( 99.6 5.7E-14 1.2E-18 113.2 13.8 173 13-222 115-290 (306)
56 KOG0149|consensus 99.6 3.2E-15 6.9E-20 113.9 5.7 70 155-227 12-81 (247)
57 KOG0126|consensus 99.5 2.3E-15 5E-20 110.3 2.7 82 11-93 33-116 (219)
58 KOG0124|consensus 99.5 5.5E-13 1.2E-17 107.6 16.2 79 11-90 208-288 (544)
59 PLN03120 nucleic acid binding 99.5 6.4E-14 1.4E-18 110.1 10.0 77 13-93 4-81 (260)
60 KOG0113|consensus 99.5 3.6E-14 7.7E-19 111.5 7.6 73 153-227 99-171 (335)
61 KOG0113|consensus 99.5 1.4E-13 3.1E-18 108.1 10.7 84 10-94 98-183 (335)
62 KOG0121|consensus 99.5 2.3E-14 5.1E-19 99.2 5.2 72 154-227 35-106 (153)
63 KOG4207|consensus 99.5 1.5E-14 3.2E-19 108.2 4.4 70 156-227 14-83 (256)
64 KOG0125|consensus 99.5 5.3E-14 1.2E-18 111.9 7.7 70 154-227 95-164 (376)
65 KOG0107|consensus 99.5 6.1E-14 1.3E-18 102.3 7.1 77 12-94 9-87 (195)
66 KOG4207|consensus 99.5 9.4E-14 2E-18 103.9 8.1 84 7-91 7-92 (256)
67 KOG1190|consensus 99.5 1.5E-12 3.2E-17 106.5 15.4 179 13-226 297-479 (492)
68 PLN03120 nucleic acid binding 99.5 6.9E-14 1.5E-18 109.9 7.3 67 155-227 4-70 (260)
69 KOG4212|consensus 99.5 3.6E-12 7.8E-17 105.1 16.8 84 3-88 205-290 (608)
70 PLN03121 nucleic acid binding 99.5 5.2E-13 1.1E-17 103.4 9.9 79 11-93 3-82 (243)
71 KOG4211|consensus 99.4 3.5E-12 7.7E-17 106.6 15.0 204 11-220 101-342 (510)
72 KOG0114|consensus 99.4 7.8E-13 1.7E-17 88.3 8.6 84 6-93 11-96 (124)
73 smart00361 RRM_1 RNA recogniti 99.4 2.9E-13 6.4E-18 87.1 6.1 57 171-227 2-65 (70)
74 KOG0114|consensus 99.4 3.5E-13 7.6E-18 90.0 6.5 68 155-227 18-85 (124)
75 PLN03213 repressor of silencin 99.4 4.9E-13 1.1E-17 111.7 8.7 78 9-91 6-87 (759)
76 KOG0126|consensus 99.4 1.8E-14 3.9E-19 105.7 0.0 73 153-227 33-105 (219)
77 smart00362 RRM_2 RNA recogniti 99.4 7E-13 1.5E-17 84.8 7.2 67 157-227 1-67 (72)
78 PLN03121 nucleic acid binding 99.4 5.6E-13 1.2E-17 103.2 7.2 68 154-227 4-71 (243)
79 KOG0107|consensus 99.4 4.6E-13 1E-17 97.8 6.3 66 155-227 10-75 (195)
80 KOG0125|consensus 99.4 6.8E-13 1.5E-17 105.7 7.7 81 10-93 93-175 (376)
81 smart00362 RRM_2 RNA recogniti 99.4 1.7E-12 3.7E-17 83.0 8.3 70 15-87 1-72 (72)
82 smart00360 RRM RNA recognition 99.4 1.1E-12 2.4E-17 83.5 7.3 66 160-227 1-66 (71)
83 KOG0108|consensus 99.4 9.6E-13 2.1E-17 111.4 8.5 80 14-94 19-100 (435)
84 KOG0129|consensus 99.4 1.1E-11 2.5E-16 104.2 13.3 169 10-218 256-432 (520)
85 smart00360 RRM RNA recognition 99.4 3E-12 6.5E-17 81.5 7.5 69 18-87 1-71 (71)
86 PLN03213 repressor of silencin 99.4 1.6E-12 3.4E-17 108.8 7.2 68 154-227 9-78 (759)
87 KOG0130|consensus 99.4 2.5E-12 5.5E-17 90.0 7.0 87 6-93 65-153 (170)
88 KOG0111|consensus 99.4 1.2E-12 2.5E-17 99.0 5.7 86 9-95 6-93 (298)
89 KOG0130|consensus 99.3 1.6E-12 3.4E-17 91.0 4.7 70 155-226 72-141 (170)
90 cd00590 RRM RRM (RNA recogniti 99.3 1.7E-11 3.7E-16 78.7 8.9 72 15-88 1-74 (74)
91 COG0724 RNA-binding proteins ( 99.3 4.7E-12 1E-16 102.0 7.5 71 155-227 115-185 (306)
92 KOG0120|consensus 99.3 6.6E-12 1.4E-16 107.1 8.3 176 9-227 171-359 (500)
93 KOG1365|consensus 99.3 2.5E-12 5.5E-17 104.4 4.8 178 13-227 161-352 (508)
94 KOG1456|consensus 99.3 4.1E-11 8.9E-16 97.1 11.6 153 10-224 28-184 (494)
95 KOG0108|consensus 99.3 4.5E-12 9.8E-17 107.4 6.4 70 156-227 19-88 (435)
96 KOG0131|consensus 99.3 1.9E-12 4.1E-17 95.1 3.4 72 154-227 8-79 (203)
97 KOG0145|consensus 99.3 2.9E-11 6.4E-16 93.7 9.9 81 11-92 276-358 (360)
98 cd00590 RRM RRM (RNA recogniti 99.3 2.2E-11 4.7E-16 78.2 7.5 68 157-227 1-68 (74)
99 KOG0111|consensus 99.3 1.4E-12 3.1E-17 98.5 2.0 72 154-227 9-80 (298)
100 KOG1190|consensus 99.2 3.5E-10 7.5E-15 92.8 13.8 202 14-227 151-363 (492)
101 PF13893 RRM_5: RNA recognitio 99.2 2.9E-11 6.2E-16 74.2 5.7 49 174-227 1-49 (56)
102 KOG4208|consensus 99.2 4.1E-11 8.8E-16 89.9 6.7 74 152-227 46-120 (214)
103 KOG0109|consensus 99.2 8.1E-11 1.8E-15 92.6 7.1 78 10-96 75-154 (346)
104 smart00361 RRM_1 RNA recogniti 99.2 1.4E-10 2.9E-15 74.6 7.0 59 27-86 2-69 (70)
105 KOG0415|consensus 99.2 5.8E-11 1.3E-15 95.7 5.8 83 9-92 235-319 (479)
106 KOG1456|consensus 99.1 5.4E-09 1.2E-13 85.1 16.7 186 9-226 283-474 (494)
107 KOG0415|consensus 99.1 1.1E-10 2.3E-15 94.2 5.8 78 148-227 232-309 (479)
108 PF13893 RRM_5: RNA recognitio 99.1 6.1E-10 1.3E-14 68.2 7.5 54 30-89 1-56 (56)
109 KOG0146|consensus 99.1 1.4E-10 2.9E-15 90.4 5.0 88 8-96 280-369 (371)
110 KOG0226|consensus 99.0 5E-10 1.1E-14 86.6 6.6 160 13-227 96-260 (290)
111 KOG0105|consensus 99.0 2.9E-10 6.2E-15 84.0 4.8 68 154-226 5-72 (241)
112 KOG4210|consensus 99.0 4.3E-10 9.4E-15 91.2 6.0 168 11-227 86-254 (285)
113 KOG4454|consensus 99.0 6.6E-11 1.4E-15 89.5 1.1 142 10-223 6-149 (267)
114 KOG4205|consensus 99.0 5.8E-10 1.3E-14 90.9 6.4 84 12-96 96-180 (311)
115 KOG0153|consensus 98.9 4.4E-09 9.4E-14 84.8 8.2 79 8-93 223-304 (377)
116 KOG0116|consensus 98.9 1.1E-08 2.4E-13 86.5 10.6 83 11-94 286-369 (419)
117 KOG4208|consensus 98.9 6.1E-09 1.3E-13 78.4 8.0 83 9-92 45-130 (214)
118 KOG4307|consensus 98.8 1.1E-07 2.3E-12 83.2 13.2 81 8-90 429-512 (944)
119 KOG0128|consensus 98.8 3.1E-10 6.8E-15 100.6 -2.7 136 12-225 666-803 (881)
120 KOG4307|consensus 98.8 5.1E-08 1.1E-12 85.1 10.3 188 10-220 308-497 (944)
121 KOG1365|consensus 98.8 1.1E-07 2.4E-12 77.8 11.4 165 10-221 57-228 (508)
122 KOG4206|consensus 98.8 1.9E-08 4.1E-13 76.9 6.5 68 154-226 8-79 (221)
123 KOG0132|consensus 98.8 1.7E-08 3.6E-13 89.1 6.7 74 13-93 421-496 (894)
124 KOG0533|consensus 98.8 3.3E-08 7.2E-13 77.7 7.5 84 9-94 79-164 (243)
125 KOG4209|consensus 98.7 2.9E-08 6.2E-13 78.1 5.1 72 153-227 99-170 (231)
126 PF04059 RRM_2: RNA recognitio 98.7 1.5E-07 3.3E-12 63.7 7.8 76 14-90 2-85 (97)
127 KOG4661|consensus 98.7 4.1E-08 8.9E-13 84.0 6.2 81 10-91 402-484 (940)
128 KOG0533|consensus 98.7 5.1E-08 1.1E-12 76.6 6.1 70 155-227 83-152 (243)
129 KOG2193|consensus 98.7 3.4E-09 7.3E-14 87.5 -0.7 140 14-225 2-145 (584)
130 KOG0226|consensus 98.6 2E-08 4.4E-13 77.8 3.2 83 10-93 187-271 (290)
131 KOG0132|consensus 98.6 5.2E-07 1.1E-11 79.9 9.9 64 155-226 421-484 (894)
132 KOG4660|consensus 98.5 5.7E-08 1.2E-12 83.0 3.8 69 152-227 72-140 (549)
133 KOG4209|consensus 98.5 3E-07 6.5E-12 72.4 6.4 84 8-92 96-180 (231)
134 KOG0112|consensus 98.5 7.6E-08 1.6E-12 86.2 2.9 148 10-226 369-518 (975)
135 KOG0153|consensus 98.5 2.4E-07 5.3E-12 74.9 5.3 68 151-226 224-292 (377)
136 PF04059 RRM_2: RNA recognitio 98.4 1.2E-06 2.6E-11 59.3 6.6 68 156-225 2-71 (97)
137 KOG0116|consensus 98.3 9.4E-07 2E-11 75.0 5.4 70 154-226 287-356 (419)
138 KOG4661|consensus 98.3 1.8E-06 4E-11 74.2 7.0 73 153-227 403-475 (940)
139 KOG1457|consensus 98.3 2.1E-06 4.5E-11 65.7 6.3 70 154-225 33-103 (284)
140 KOG0151|consensus 98.3 1.2E-06 2.7E-11 76.9 5.0 73 152-226 171-246 (877)
141 KOG4454|consensus 98.2 9.3E-07 2E-11 67.4 2.9 71 153-227 7-77 (267)
142 KOG0151|consensus 98.2 3.9E-06 8.4E-11 73.9 6.2 82 10-92 171-257 (877)
143 KOG4660|consensus 98.1 2.4E-06 5.2E-11 73.3 3.3 70 10-85 72-143 (549)
144 KOG4676|consensus 98.1 4.5E-06 9.7E-11 68.7 4.1 190 13-220 7-210 (479)
145 KOG4210|consensus 97.9 1.6E-05 3.4E-10 64.8 4.8 85 10-95 181-267 (285)
146 KOG1548|consensus 97.9 3.4E-05 7.4E-10 62.7 6.5 69 156-227 135-211 (382)
147 KOG1855|consensus 97.9 1.1E-05 2.3E-10 67.3 3.1 67 153-221 229-308 (484)
148 KOG0106|consensus 97.8 9.4E-06 2E-10 62.7 2.3 60 157-226 3-62 (216)
149 KOG2314|consensus 97.8 2.1E-05 4.6E-10 67.7 4.4 70 155-225 58-131 (698)
150 PF11608 Limkain-b1: Limkain b 97.8 5E-05 1.1E-09 49.3 4.9 60 157-226 4-66 (90)
151 PF08777 RRM_3: RNA binding mo 97.7 0.00011 2.3E-09 50.8 5.0 56 157-220 3-58 (105)
152 KOG0128|consensus 97.6 3.7E-06 8E-11 75.4 -3.2 161 14-224 572-734 (881)
153 KOG1995|consensus 97.6 5.3E-05 1.1E-09 62.0 3.6 83 10-93 63-155 (351)
154 KOG4849|consensus 97.6 3.7E-05 8.1E-10 62.6 2.6 75 11-86 78-156 (498)
155 PF11608 Limkain-b1: Limkain b 97.6 5.7E-05 1.2E-09 49.1 2.8 68 14-92 3-77 (90)
156 KOG1996|consensus 97.5 0.00018 3.8E-09 57.4 5.4 59 169-227 298-357 (378)
157 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00019 4E-09 43.1 4.1 51 157-216 3-53 (53)
158 PF08777 RRM_3: RNA binding mo 97.5 0.00049 1.1E-08 47.5 6.3 69 14-89 2-77 (105)
159 COG5175 MOT2 Transcriptional r 97.4 0.00037 8E-09 56.7 5.8 73 154-227 113-193 (480)
160 KOG1995|consensus 97.4 0.00054 1.2E-08 56.2 6.2 72 153-226 64-143 (351)
161 KOG0115|consensus 97.3 0.00047 1E-08 54.1 5.4 60 157-219 33-92 (275)
162 PF08675 RNA_bind: RNA binding 97.3 0.0009 1.9E-08 43.5 5.5 54 159-220 10-63 (87)
163 KOG3152|consensus 97.3 0.00013 2.7E-09 57.2 1.8 71 155-227 74-156 (278)
164 KOG4849|consensus 97.1 0.00028 6.1E-09 57.6 2.4 70 156-227 81-152 (498)
165 KOG0129|consensus 97.1 0.0019 4.1E-08 55.5 6.9 83 7-90 364-452 (520)
166 COG5175 MOT2 Transcriptional r 97.0 0.0018 3.8E-08 52.9 5.9 78 13-91 114-202 (480)
167 KOG2202|consensus 96.9 0.00039 8.5E-09 54.5 1.0 55 172-227 83-138 (260)
168 KOG2416|consensus 96.8 0.00093 2E-08 58.3 3.0 78 7-91 438-521 (718)
169 KOG2314|consensus 96.8 0.0059 1.3E-07 53.2 7.7 78 11-90 56-142 (698)
170 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0048 1E-07 36.9 4.0 51 14-71 2-53 (53)
171 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.005 1.1E-07 42.0 4.4 66 157-226 8-80 (100)
172 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0099 2.1E-07 40.6 5.6 78 11-90 4-90 (100)
173 KOG2416|consensus 96.4 0.002 4.4E-08 56.2 2.4 70 147-224 436-506 (718)
174 KOG3152|consensus 96.3 0.0017 3.6E-08 51.0 1.1 71 12-83 73-157 (278)
175 PF08952 DUF1866: Domain of un 96.2 0.018 3.8E-07 41.8 5.9 73 10-91 24-106 (146)
176 PF10309 DUF2414: Protein of u 96.1 0.027 5.8E-07 34.7 5.6 53 12-72 4-60 (62)
177 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.021 4.5E-07 43.3 5.7 80 10-90 4-96 (176)
178 PF10309 DUF2414: Protein of u 95.9 0.036 7.9E-07 34.2 5.3 55 155-219 5-62 (62)
179 KOG1855|consensus 95.8 0.066 1.4E-06 45.3 8.5 66 10-75 228-308 (484)
180 KOG2068|consensus 95.8 0.0074 1.6E-07 49.4 2.9 71 156-227 78-153 (327)
181 KOG4676|consensus 95.8 0.008 1.7E-07 50.1 2.9 67 157-225 9-78 (479)
182 PF08675 RNA_bind: RNA binding 95.7 0.044 9.5E-07 35.8 5.5 56 11-74 7-63 (87)
183 PF08952 DUF1866: Domain of un 95.6 0.042 9.1E-07 39.9 5.8 67 152-227 24-97 (146)
184 PF07576 BRAP2: BRCA1-associat 95.6 0.18 3.8E-06 35.1 8.6 66 13-81 12-81 (110)
185 KOG0112|consensus 95.3 0.019 4.2E-07 52.6 4.0 76 9-91 451-530 (975)
186 KOG2202|consensus 95.1 0.0077 1.7E-07 47.4 0.6 61 29-91 84-147 (260)
187 PF07576 BRAP2: BRCA1-associat 94.8 0.32 6.9E-06 33.8 8.1 67 156-225 13-80 (110)
188 KOG1996|consensus 94.2 0.15 3.2E-06 41.2 5.9 62 28-90 301-365 (378)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 93.9 0.12 2.7E-06 39.1 4.8 70 154-225 6-81 (176)
190 PF15023 DUF4523: Protein of u 93.8 0.2 4.4E-06 36.2 5.3 65 152-223 83-149 (166)
191 KOG0804|consensus 93.6 0.2 4.4E-06 42.8 5.9 66 13-81 74-142 (493)
192 KOG2193|consensus 93.3 0.084 1.8E-06 44.7 3.2 60 156-223 2-61 (584)
193 KOG4574|consensus 93.1 0.047 1E-06 50.0 1.6 52 167-224 308-359 (1007)
194 KOG0115|consensus 93.1 0.091 2E-06 41.6 2.9 58 14-72 32-90 (275)
195 KOG2068|consensus 93.0 0.051 1.1E-06 44.6 1.5 78 14-93 78-164 (327)
196 KOG0804|consensus 92.8 0.34 7.3E-06 41.5 6.1 68 154-225 73-141 (493)
197 KOG2253|consensus 90.6 0.41 9E-06 42.9 4.4 63 153-226 38-100 (668)
198 PF04847 Calcipressin: Calcipr 89.7 1 2.2E-05 34.4 5.5 60 26-92 8-71 (184)
199 KOG2135|consensus 89.4 0.28 6E-06 42.3 2.4 76 9-91 368-445 (526)
200 KOG4285|consensus 88.6 1.1 2.3E-05 36.6 5.0 49 171-226 210-258 (350)
201 KOG2591|consensus 85.9 3.3 7.2E-05 36.7 6.9 55 156-219 176-232 (684)
202 KOG4483|consensus 83.8 2.6 5.7E-05 35.7 5.2 57 10-73 388-446 (528)
203 KOG2591|consensus 83.4 3 6.5E-05 37.0 5.5 71 9-86 171-246 (684)
204 PF11767 SET_assoc: Histone ly 82.3 8.8 0.00019 24.0 6.0 54 24-86 11-65 (66)
205 KOG2253|consensus 81.3 0.94 2E-05 40.7 1.8 72 7-88 34-107 (668)
206 PF07292 NID: Nmi/IFP 35 domai 80.6 2.4 5.1E-05 28.2 3.1 32 57-89 1-34 (88)
207 PF03880 DbpA: DbpA RNA bindin 80.4 4.7 0.0001 25.7 4.4 57 23-89 11-74 (74)
208 PF15023 DUF4523: Protein of u 79.9 10 0.00022 27.7 6.3 70 10-88 83-158 (166)
209 KOG4285|consensus 79.6 7.3 0.00016 32.0 6.1 74 13-94 197-272 (350)
210 KOG2318|consensus 79.2 5.7 0.00012 35.4 5.8 73 152-225 171-294 (650)
211 KOG4410|consensus 76.1 20 0.00043 29.2 7.6 59 154-220 329-395 (396)
212 PF03880 DbpA: DbpA RNA bindin 75.7 9 0.0002 24.3 4.8 49 170-227 14-67 (74)
213 KOG4574|consensus 75.2 1.7 3.7E-05 40.4 1.6 74 14-94 299-376 (1007)
214 KOG2135|consensus 74.9 1.3 2.8E-05 38.3 0.8 64 156-227 373-436 (526)
215 KOG4410|consensus 74.3 7.2 0.00016 31.7 4.7 49 10-64 327-377 (396)
216 PF11767 SET_assoc: Histone ly 73.1 18 0.00039 22.6 5.4 49 168-225 11-59 (66)
217 PF03468 XS: XS domain; Inter 71.1 4.2 9E-05 28.6 2.5 59 157-218 10-76 (116)
218 KOG2295|consensus 70.4 0.49 1.1E-05 41.6 -2.7 71 12-83 230-302 (648)
219 KOG2891|consensus 62.3 4.8 0.0001 32.6 1.5 71 154-224 148-247 (445)
220 KOG2318|consensus 56.8 40 0.00087 30.4 6.3 80 8-88 169-302 (650)
221 PF14111 DUF4283: Domain of un 53.3 14 0.0003 26.7 2.7 109 24-190 28-138 (153)
222 KOG4483|consensus 52.1 41 0.00088 28.9 5.3 56 154-218 390-446 (528)
223 COG5193 LHP1 La protein, small 50.4 12 0.00025 32.1 2.0 62 156-217 175-244 (438)
224 KOG2295|consensus 50.2 3.7 8.1E-05 36.3 -0.9 67 156-224 232-298 (648)
225 cd04908 ACT_Bt0572_1 N-termina 48.4 60 0.0013 19.6 5.9 45 171-219 15-60 (66)
226 PF04026 SpoVG: SpoVG; InterP 47.9 37 0.0008 22.3 3.7 26 183-208 2-27 (84)
227 PRK14548 50S ribosomal protein 47.4 64 0.0014 21.2 4.8 57 159-220 24-82 (84)
228 PF07530 PRE_C2HC: Associated 46.5 36 0.00078 21.3 3.4 61 29-92 3-65 (68)
229 KOG1295|consensus 43.9 33 0.00071 29.2 3.7 64 12-75 6-74 (376)
230 PF08734 GYD: GYD domain; Int 43.5 91 0.002 20.6 5.2 46 171-220 22-68 (91)
231 PF11823 DUF3343: Protein of u 43.0 24 0.00052 22.2 2.2 26 200-225 2-27 (73)
232 PRK11634 ATP-dependent RNA hel 41.4 2.9E+02 0.0064 25.6 10.5 60 23-92 497-563 (629)
233 KOG4213|consensus 39.8 53 0.0011 25.0 3.8 48 170-219 122-170 (205)
234 KOG4019|consensus 39.7 19 0.0004 27.4 1.5 65 156-226 11-78 (193)
235 PF00403 HMA: Heavy-metal-asso 39.7 81 0.0018 18.6 4.6 54 158-219 2-59 (62)
236 PF15513 DUF4651: Domain of un 39.2 60 0.0013 20.0 3.4 22 171-192 8-29 (62)
237 PRK13259 regulatory protein Sp 38.5 58 0.0013 21.9 3.5 26 183-208 2-27 (94)
238 PRK11901 hypothetical protein; 37.3 56 0.0012 27.3 4.0 50 170-221 255-306 (327)
239 PF05573 NosL: NosL; InterPro 37.1 46 0.001 24.3 3.3 29 196-224 111-139 (149)
240 TIGR03636 L23_arch archaeal ri 35.6 1.2E+02 0.0026 19.5 4.8 58 158-220 16-75 (77)
241 PF03439 Spt5-NGN: Early trans 32.8 88 0.0019 20.3 3.8 25 198-222 43-67 (84)
242 cd04889 ACT_PDH-BS-like C-term 31.5 1.1E+02 0.0023 17.6 4.5 43 171-216 12-55 (56)
243 PRK08559 nusG transcription an 31.3 1.3E+02 0.0028 22.1 4.8 34 184-222 36-69 (153)
244 KOG4019|consensus 30.5 37 0.00079 25.8 1.8 73 14-93 11-91 (193)
245 PTZ00191 60S ribosomal protein 30.2 1.5E+02 0.0033 21.7 4.8 57 158-219 84-142 (145)
246 smart00596 PRE_C2HC PRE_C2HC d 29.6 65 0.0014 20.3 2.5 60 29-91 3-64 (69)
247 PF10567 Nab6_mRNP_bdg: RNA-re 29.1 1E+02 0.0023 25.4 4.2 56 156-213 16-78 (309)
248 cd04904 ACT_AAAH ACT domain of 28.9 1.5E+02 0.0033 18.5 5.1 51 170-221 13-65 (74)
249 PRK11230 glycolate oxidase sub 28.0 1.3E+02 0.0028 26.9 5.1 46 173-219 205-254 (499)
250 PF00585 Thr_dehydrat_C: C-ter 27.5 1.8E+02 0.004 19.1 4.7 61 157-221 11-73 (91)
251 COG0030 KsgA Dimethyladenosine 27.1 46 0.001 27.0 1.9 34 14-47 96-130 (259)
252 PF02714 DUF221: Domain of unk 26.3 96 0.0021 25.6 3.8 36 57-95 1-37 (325)
253 COG0150 PurM Phosphoribosylami 24.4 41 0.00089 28.3 1.2 47 172-222 276-322 (345)
254 COG3254 Uncharacterized conser 24.3 2.2E+02 0.0048 19.6 4.5 43 172-217 27-69 (105)
255 COG0217 Uncharacterized conser 24.3 2.8E+02 0.006 22.2 5.7 47 154-207 93-143 (241)
256 PF10567 Nab6_mRNP_bdg: RNA-re 23.9 1.6E+02 0.0035 24.3 4.4 82 9-90 11-106 (309)
257 PF15407 Spo7_2_N: Sporulation 23.8 31 0.00067 21.6 0.3 19 11-29 25-43 (67)
258 KOG0156|consensus 23.0 1.5E+02 0.0032 26.5 4.5 59 159-227 36-95 (489)
259 TIGR01033 DNA-binding regulato 22.8 1.8E+02 0.0039 23.2 4.6 48 153-207 92-143 (238)
260 TIGR00387 glcD glycolate oxida 22.2 1.9E+02 0.0041 25.0 5.0 46 173-219 148-197 (413)
261 PRK15321 putative type III sec 21.4 39 0.00085 22.8 0.5 38 160-209 26-65 (120)
262 PF06613 KorB_C: KorB C-termin 20.4 1.6E+02 0.0035 18.0 2.9 22 186-208 19-40 (60)
263 TIGR00405 L26e_arch ribosomal 20.1 1.1E+02 0.0024 22.0 2.7 25 198-222 37-61 (145)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.1e-35 Score=242.38 Aligned_cols=159 Identities=18% Similarity=0.281 Sum_probs=144.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
......++|||+|||+++|+++|+++|+.| +|..|+|++|+.+++++|||||+|.+.++|.+||+ |++ ..+.+++|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG-~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG-ITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC-CccCCceee
Confidence 455678999999999999999999999999 99999999999999999999999999999999998 999 999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCC
Q psy1680 86 LDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGP 165 (227)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 165 (227)
|.++.+.... ....+|||+|||.
T Consensus 181 V~~a~p~~~~---------------------------------------------------------~~~~~lfV~nLp~ 203 (346)
T TIGR01659 181 VSYARPGGES---------------------------------------------------------IKDTNLYVTNLPR 203 (346)
T ss_pred eecccccccc---------------------------------------------------------cccceeEEeCCCC
Confidence 9987642210 1234699999976
Q ss_pred CCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 166 NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 166 ~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.+ ++++|+++|++||.|+.|+|++|+.+++++|||||+|.+.++|++||+.||+..|+|
T Consensus 204 ~v--tee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 204 TI--TDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred cc--cHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 55 789999999999999999999999999999999999999999999999999998876
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.3e-33 Score=237.15 Aligned_cols=213 Identities=21% Similarity=0.329 Sum_probs=147.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
+..+|||+|||..+++++|+++|++| +|.+|+|++++.+++++|||||+|.+.++|.+||+ +++ ..|.|+.|.|.++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g-~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNG-LRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhccc-EEECCeeEEEEee
Confidence 47899999999999999999999999 99999999999999999999999999999999999 999 9999999999998
Q ss_pred CCCCCCCCC----------------------CCC--------------CCCCC------------------CCC-CCCCC
Q psy1680 90 DGKRNDNKG----------------------GFN--------------NKQNR------------------GGG-SGGMG 114 (227)
Q Consensus 90 ~~~~~~~~~----------------------~~~--------------~~~~~------------------~~~-~~~~~ 114 (227)
.+....... .++ ...+. .+. ..+..
T Consensus 81 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 81 RPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred cccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 765431100 000 00000 000 00000
Q ss_pred CC---CCCCCCC----CCCCC-----CCCCCCC----------------------CC-----------------------
Q psy1680 115 GN---KYNQHQG----GSFNR-----DNMRNNS----------------------RG----------------------- 137 (227)
Q Consensus 115 ~~---~~~~~~~----~~~~~-----~~~~~~~----------------------~~----------------------- 137 (227)
.. .+..... ..... ..+.... +.
T Consensus 161 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR01661 161 EPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHA 240 (352)
T ss_pred eeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccc
Confidence 00 0000000 00000 0000000 00
Q ss_pred -CCCCC------C----CCCCCCCCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEE
Q psy1680 138 -GGASS------G----GGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEF 206 (227)
Q Consensus 138 -~~~~~------~----~~~~~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F 206 (227)
...+. . .+.........+.+|||+|||+.+ ++++|+++|++||.|.+|+|++|+.|+.++|||||+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~--~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 241 AQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDT--DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 00000 0 000000011223469999997654 7899999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHcCCccccCC
Q psy1680 207 VDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 207 ~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.++|.+|++.|||..|+||
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~gr 339 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGNR 339 (352)
T ss_pred CCHHHHHHHHHHhCCCEECCe
Confidence 999999999999999999997
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2e-32 Score=238.27 Aligned_cols=169 Identities=16% Similarity=0.253 Sum_probs=143.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
....++|||+|||+++++++|+++|++| .|.+|.|++|+.+++++|||||+|.+.++|++||+ +|| ..|+|+.|+|.
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG-~~i~GR~IkV~ 182 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG-QMLGGRNIKVG 182 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCC-eEEecceeeec
Confidence 3456899999999999999999999999 99999999999999999999999999999999998 999 99999999998
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
+......... . .... ........+|||+|||+.+
T Consensus 183 rp~~~p~a~~-----------------~--~~~~---------------------------~~~~~~~~rLfVgnLp~~v 216 (612)
T TIGR01645 183 RPSNMPQAQP-----------------I--IDMV---------------------------QEEAKKFNRIYVASVHPDL 216 (612)
T ss_pred cccccccccc-----------------c--cccc---------------------------cccccccceEEeecCCCCC
Confidence 5432111000 0 0000 0001234589999997665
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+++|+.||.|++|+|.+|+.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 217 --teedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr 274 (612)
T TIGR01645 217 --SETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ 274 (612)
T ss_pred --CHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 7899999999999999999999999999999999999999999999999999999986
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=8.9e-31 Score=227.19 Aligned_cols=170 Identities=26% Similarity=0.332 Sum_probs=145.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
+...++|||+|||..+++++|+++|++| .|..|.|++++.+++++|||||+|.+.++|.+||.+++ ..+.|++|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g-~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTG-QMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCC-CEECCeeeEEee
Confidence 4557899999999999999999999999 99999999999999999999999999999999999999 999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
+............ .. ....+...+|||+|||..+
T Consensus 165 ~~~~~~~~~~~~~-------------------~~--------------------------~~~~p~~~~l~v~nl~~~~- 198 (457)
T TIGR01622 165 SQAEKNRAAKAAT-------------------HQ--------------------------PGDIPNFLKLYVGNLHFNI- 198 (457)
T ss_pred cchhhhhhhhccc-------------------cc--------------------------CCCCCCCCEEEEcCCCCCC-
Confidence 6543322110000 00 0001235689999997655
Q ss_pred CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 169 NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 199 -te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~ 256 (457)
T TIGR01622 199 -TEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR 256 (457)
T ss_pred -CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCE
Confidence 7899999999999999999999999999999999999999999999999999999885
No 5
>KOG0148|consensus
Probab=99.97 E-value=4.5e-30 Score=197.55 Aligned_cols=165 Identities=19% Similarity=0.364 Sum_probs=140.0
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
...-|||+-|...++-++|++.|.+| +|.+++|++|..|+++|||+||.|...++|++||. +|| .+|++|.|+-.|+
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG-qWlG~R~IRTNWA 139 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG-QWLGRRTIRTNWA 139 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC-eeeccceeecccc
Confidence 35789999999999999999999999 99999999999999999999999999999999999 999 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
..|.....+. .-.|+.. ++ ...+...++|++|++. -.
T Consensus 140 TRKp~e~n~~---------------~ltfdeV----~N----------------------Qssp~NtsVY~G~I~~--~l 176 (321)
T KOG0148|consen 140 TRKPSEMNGK---------------PLTFDEV----YN----------------------QSSPDNTSVYVGNIAS--GL 176 (321)
T ss_pred ccCccccCCC---------------CccHHHH----hc----------------------cCCCCCceEEeCCcCc--cc
Confidence 8665221100 0000000 00 0114567899999975 34
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++++|++.|++||.|.+|++.+| +||+||.|++.|.|..||..+||.+|+|
T Consensus 177 te~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G 227 (321)
T KOG0148|consen 177 TEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGG 227 (321)
T ss_pred cHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCc
Confidence 78999999999999999999999 5999999999999999999999999987
No 6
>KOG0144|consensus
Probab=99.97 E-value=2.9e-30 Score=209.85 Aligned_cols=157 Identities=21% Similarity=0.342 Sum_probs=138.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC--eE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQ 83 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g--~~ 83 (227)
.++.+.-++||+-||..|+|+||+++|++| .|.+|.|++|+.|+.++|+|||.|.+.++|.+|+. |++.+.|-| ++
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 345667899999999999999999999999 99999999999999999999999999999999998 777466766 57
Q ss_pred eEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccC
Q psy1680 84 VRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNN 163 (227)
Q Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 163 (227)
|.|+++....++. ...++|||+.|
T Consensus 109 vqvk~Ad~E~er~--------------------------------------------------------~~e~KLFvg~l 132 (510)
T KOG0144|consen 109 VQVKYADGERERI--------------------------------------------------------VEERKLFVGML 132 (510)
T ss_pred eeecccchhhhcc--------------------------------------------------------ccchhhhhhhc
Confidence 8888887654422 13457999999
Q ss_pred CCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcc
Q psy1680 164 GPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT 223 (227)
Q Consensus 164 ~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~ 223 (227)
+.. .+|.+++++|++||.|++|+|++|.+ +.+||+|||+|.+.|.|..|+++|||..
T Consensus 133 sK~--~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 133 SKQ--CTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccc--ccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccce
Confidence 544 48999999999999999999999976 9999999999999999999999999863
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2.2e-29 Score=223.42 Aligned_cols=154 Identities=19% Similarity=0.295 Sum_probs=137.5
Q ss_pred eEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCCC
Q psy1680 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGK 92 (227)
Q Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~~ 92 (227)
+|||+|||.++||++|+++|++| .|..|+|++|..|++++|||||+|.+.++|++||+ +++ ..+.|+.|+|.++...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~-~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNF-KRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeeEEeeccccc
Confidence 79999999999999999999999 99999999999999999999999999999999998 999 9999999999987532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCChh
Q psy1680 93 RNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMN 172 (227)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 172 (227)
...+. ....+|||+|||.+. +++
T Consensus 81 ~~~~~-------------------------------------------------------~~~~~vfV~nLp~~~--~~~ 103 (562)
T TIGR01628 81 PSLRR-------------------------------------------------------SGVGNIFVKNLDKSV--DNK 103 (562)
T ss_pred ccccc-------------------------------------------------------cCCCceEEcCCCccC--CHH
Confidence 21110 113369999996655 789
Q ss_pred hHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 173 DHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 173 ~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+|+++|+.||.|.+|+|+++. +|+++|||||+|.+.++|.+|++.+||..++|+
T Consensus 104 ~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 104 ALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred HHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 999999999999999999994 689999999999999999999999999998875
No 8
>KOG0145|consensus
Probab=99.96 E-value=3.9e-28 Score=186.10 Aligned_cols=215 Identities=20% Similarity=0.261 Sum_probs=150.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
.+..+.|.|.=||.++|+++|+.+|... +|+.|++++|+.+|.+.||+||-|-++++|++|+. +|| ..+..+.|+|.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNG-LrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNG-LRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcc-eeeccceEEEE
Confidence 3445788899999999999999999999 99999999999999999999999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCCC------------------------------------CCCCCC------------------CCCCCCCC
Q psy1680 88 IADGKRNDNKGG------------------------------------FNNKQN------------------RGGGSGGM 113 (227)
Q Consensus 88 ~~~~~~~~~~~~------------------------------------~~~~~~------------------~~~~~~~~ 113 (227)
+++|-...-.+. -+-.++ ..|..+..
T Consensus 117 yARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 117 YARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred eccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 999755321100 000000 00100000
Q ss_pred CCC----CCCCCCCC------------CCCCCCC-C-----CCC-------------C-----CCCCCCCCCCCCCCCCC
Q psy1680 114 GGN----KYNQHQGG------------SFNRDNM-R-----NNS-------------R-----GGGASSGGGFNDFSRGG 153 (227)
Q Consensus 114 ~~~----~~~~~~~~------------~~~~~~~-~-----~~~-------------~-----~~~~~~~~~~~~~~~~~ 153 (227)
-.. +|...++. +..+.-. + ... + .+.-+.-.+.+.+....
T Consensus 197 ~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~ 276 (360)
T KOG0145|consen 197 CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPG 276 (360)
T ss_pred CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCC
Confidence 000 01000000 0000000 0 000 0 00000001112222223
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+-.|||.||+++.+ |.-||++|++||.|.+|+|++|..|+++||||||...+.++|..|+..|||+.+++|
T Consensus 277 ~g~ciFvYNLspd~d--e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDAD--ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred CeeEEEEEecCCCch--HhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 346799999987774 567999999999999999999999999999999999999999999999999999886
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1e-27 Score=210.68 Aligned_cols=182 Identities=19% Similarity=0.193 Sum_probs=132.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-------------CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCC
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-------------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-------------~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~ 75 (227)
.....++|||+|||+.+|+++|+++|..+ .|..+.+ ++.+|||||+|.+.++|..||.|+|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCC
Confidence 34567899999999999999999999864 2233333 4458999999999999999999999
Q ss_pred CceeCCeEeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1680 76 RITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEG 155 (227)
Q Consensus 76 ~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (227)
..|.|..|.|............... ..... .. ..... ... .........+.
T Consensus 245 -~~~~g~~l~v~r~~~~~~~~~~~~~----------~~~~~-----~~-----~~~~~-----~~~---~~~~~~~~~~~ 295 (509)
T TIGR01642 245 -IIYSNVFLKIRRPHDYIPVPQITPE----------VSQKN-----PD-----DNAKN-----VEK---LVNSTTVLDSK 295 (509)
T ss_pred -eEeeCceeEecCccccCCccccCCC----------CCCCC-----Cc-----ccccc-----ccc---ccccccCCCCC
Confidence 9999999999765433211100000 00000 00 00000 000 00000111345
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+|||+|||..+ ++++|+++|+.||.|..+.|++++.+|.++|||||+|.+.++|..|++.|||..|+|+
T Consensus 296 ~~l~v~nlp~~~--~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 296 DRIYIGNLPLYL--GEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 789999997655 7899999999999999999999999999999999999999999999999999999875
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=3.2e-27 Score=207.49 Aligned_cols=187 Identities=16% Similarity=0.166 Sum_probs=141.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
...++|||+|||..+++++|+++|+.| .|..+.|++++.+|.++|||||+|.+.++|..||. |+| ..|.|+.|.|.+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g-~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNG-KDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEE
Confidence 345899999999999999999999999 99999999999999999999999999999999998 999 999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
+............. +... .... ... ... ......+.+..+|+|.|+....+
T Consensus 372 a~~~~~~~~~~~~~---------~~~~--~~~~---------~~~-------~~~--~~~~~~~~~s~v~~l~N~~~~~~ 422 (509)
T TIGR01642 372 ACVGANQATIDTSN---------GMAP--VTLL---------AKA-------LSQ--SILQIGGKPTKVVQLTNLVTGDD 422 (509)
T ss_pred CccCCCCCCccccc---------cccc--cccc---------ccc-------chh--hhccccCCCceEEEeccCCchhH
Confidence 86543221100000 0000 0000 000 000 00011224677899999963221
Q ss_pred --------CChhhHHhhhccccceEEEEEeecC---CCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 169 --------NSMNDHGLMVTEVTTLVSVRLVKDK---ETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 169 --------~~~~~l~~~f~~~g~i~~v~i~~d~---~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.++|+++|++||.|+.|.|+++. .++...|+|||+|.++++|.+|+++|||..|+||
T Consensus 423 l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr 492 (509)
T TIGR01642 423 LMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDR 492 (509)
T ss_pred hcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 1346899999999999999998753 3455679999999999999999999999999996
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.5e-27 Score=209.44 Aligned_cols=174 Identities=18% Similarity=0.291 Sum_probs=141.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC----CeE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD----GLQ 83 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~----g~~ 83 (227)
....++|||+|||.++|+++|+++|+.| .|..+.++.+. +++++|||||.|.+.++|.+|++ +++ ..+. |+.
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g-~~i~~~~~g~~ 252 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNG-KKIGLAKEGKK 252 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC-cEeccccccee
Confidence 3445789999999999999999999999 99999999884 68899999999999999999999 999 9999 999
Q ss_pred eEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccC
Q psy1680 84 VRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNN 163 (227)
Q Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 163 (227)
+.|.++..+......-.. .+..... .........+|||+||
T Consensus 253 l~v~~a~~k~er~~~~~~---------------~~~~~~~------------------------~~~~~~~~~~l~V~nl 293 (562)
T TIGR01628 253 LYVGRAQKRAEREAELRR---------------KFEELQQ------------------------ERKMKAQGVNLYVKNL 293 (562)
T ss_pred eEeecccChhhhHHHHHh---------------hHHhhhh------------------------hhhcccCCCEEEEeCC
Confidence 999888765442110000 0000000 0000123457999999
Q ss_pred CCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 164 GPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 164 ~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++.+ ++++|+++|++||.|++|+|++| .+|.++|||||+|.+.++|.+|+..|||..|+||
T Consensus 294 ~~~~--~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk 354 (562)
T TIGR01628 294 DDTV--TDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK 354 (562)
T ss_pred CCcc--CHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc
Confidence 6655 78999999999999999999999 6799999999999999999999999999999986
No 12
>KOG0131|consensus
Probab=99.95 E-value=8.3e-28 Score=175.16 Aligned_cols=160 Identities=19% Similarity=0.300 Sum_probs=142.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
+.....+|||+||+..++++-|.++|-+. +|..+.|++|+.+...+||||++|.++++|+-|++ +|. .+|.|++|+|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~-VkLYgrpIrv 83 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM-VKLYGRPIRV 83 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH-HHhcCceeEE
Confidence 44567899999999999999999999999 99999999999999999999999999999999999 998 9999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCC
Q psy1680 87 DIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPN 166 (227)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 166 (227)
..+....... ..+..|||+||.+.
T Consensus 84 ~kas~~~~nl--------------------------------------------------------~vganlfvgNLd~~ 107 (203)
T KOG0131|consen 84 NKASAHQKNL--------------------------------------------------------DVGANLFVGNLDPE 107 (203)
T ss_pred Eecccccccc--------------------------------------------------------cccccccccccCcc
Confidence 9987322211 12347999999765
Q ss_pred CCCChhhHHhhhccccceEEE-EEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 167 RSNSMNDHGLMVTEVTTLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 167 ~~~~~~~l~~~f~~~g~i~~v-~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
. .+..|++.|+.||.|.+. .|++|++||+++|||||.|++.|.+.+|++++||..+..|
T Consensus 108 v--De~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr 167 (203)
T KOG0131|consen 108 V--DEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR 167 (203)
T ss_pred h--hHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC
Confidence 4 688899999999988765 8999999999999999999999999999999999988754
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=4.7e-26 Score=198.16 Aligned_cols=187 Identities=16% Similarity=0.134 Sum_probs=136.2
Q ss_pred CCCceEEEcCCCC-CCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 11 EPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 11 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
.++++|||+|||+ .+|+++|+++|+.| .|..|+|++++ +|+|||+|.+.++|..||. ||+ ..|.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng-~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNG-VKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC-CEECCceEEEE
Confidence 4678999999998 69999999999999 99999998763 6899999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
++............. ..+ ...+.........+ .... .........+++.+|||+|||..+
T Consensus 347 ~s~~~~~~~~~~~~~----~~~-----~~~~~d~~~~~~~r--------~~~~---~~~~~~~~~~ps~~L~v~NLp~~~ 406 (481)
T TIGR01649 347 PSKQQNVQPPREGQL----DDG-----LTSYKDYSSSRNHR--------FKKP---GSANKNNIQPPSATLHLSNIPLSV 406 (481)
T ss_pred EcccccccCCCCCcC----cCC-----CcccccccCCcccc--------CCCc---ccccccccCCCCcEEEEecCCCCC
Confidence 986544321100000 000 00000000000000 0000 000001123577899999997655
Q ss_pred CCChhhHHhhhccccc--eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 168 SNSMNDHGLMVTEVTT--LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~--i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+++|+.||. |+.|++.... +..+|+|||+|.+.++|.+||..|||..|+|+
T Consensus 407 --tee~L~~lF~~~G~~~i~~ik~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~ 464 (481)
T TIGR01649 407 --SEEDLKELFAENGVHKVKKFKFFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEP 464 (481)
T ss_pred --CHHHHHHHHHhcCCccceEEEEecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCC
Confidence 78999999999997 8888887653 23579999999999999999999999999875
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.8e-26 Score=200.81 Aligned_cols=199 Identities=15% Similarity=0.215 Sum_probs=132.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC-CeEeEEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-GLQVRLD 87 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~-g~~l~v~ 87 (227)
...++|||+|||.+++|++|+++|++| .|.+++|++| .+++++|||||+|.+.++|++||+ +|+ ..+. ++.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng-~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNN-YEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCC-CeecCCcccccc
Confidence 446999999999999999999999999 9999999999 889999999999999999999999 999 8774 6777766
Q ss_pred ecCCCCC----------CCC---CCCCC------------CCCCCCCCCCCCCCCCCCCCCC-------------CCCCC
Q psy1680 88 IADGKRN----------DNK---GGFNN------------KQNRGGGSGGMGGNKYNQHQGG-------------SFNRD 129 (227)
Q Consensus 88 ~~~~~~~----------~~~---~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 129 (227)
.+..... ... ..+.. .........++.--.|.+.... .+.+.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 5532111 000 00000 0000000001000011111110 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCChhhHHhhhccc--cceEEEEEeecCCCCcccceEEEEEc
Q psy1680 130 NMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEV--TTLVSVRLVKDKETDRFKGFCYVEFV 207 (227)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~--g~i~~v~i~~d~~t~~~~g~afV~F~ 207 (227)
-.- .+..... ..+.......++|||+||+..+ ++++|+++|+.| |.|+.|.+++ +||||+|.
T Consensus 214 I~V-----dwA~p~~-~~d~~~~~~~k~LfVgNL~~~~--tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~ 277 (578)
T TIGR01648 214 IAV-----DWAEPEE-EVDEDVMAKVKILYVRNLMTTT--TEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFE 277 (578)
T ss_pred EEE-----Eeecccc-cccccccccccEEEEeCCCCCC--CHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeC
Confidence 000 0000000 0000011234689999996554 799999999999 9999998754 59999999
Q ss_pred CHHHHHHHHHHcCCccccCC
Q psy1680 208 DVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 208 ~~~~a~~Al~~l~g~~i~gr 227 (227)
+.++|.+|++.|||.+|+||
T Consensus 278 s~e~A~kAi~~lnG~~i~Gr 297 (578)
T TIGR01648 278 DREDAVKAMDELNGKELEGS 297 (578)
T ss_pred CHHHHHHHHHHhCCCEECCE
Confidence 99999999999999999986
No 15
>KOG0127|consensus
Probab=99.95 E-value=2.1e-26 Score=192.20 Aligned_cols=212 Identities=21% Similarity=0.315 Sum_probs=144.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
+..+|+|+|||+.+.+.+|+.+|+.| .|.+|.|++.+.+ +.+|||||+|....+|..||+ +|+ ..|+|++|.|.|+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcGFaFV~fk~~~dA~~Al~~~N~-~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCGFAFVQFKEKKDAEKALEFFNG-NKIDGRPVAVDWA 193 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-CccceEEEEEeeHHHHHHHHHhccC-ceecCceeEEeee
Confidence 36899999999999999999999999 9999999987664 445999999999999999999 999 9999999999999
Q ss_pred CCCCCCCCCCCCCCCC-----------C-CCCCCC--------CCCCCCC--CCCCCCCC---CCCCCCCCCCCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQN-----------R-GGGSGG--------MGGNKYN--QHQGGSFN---RDNMRNNSRGGGASSGG 144 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~-----------~-~~~~~~--------~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~ 144 (227)
-++............+ . ....+. .....-. ...+.... ........-.+..+++.
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 8776432211000000 0 000000 0000000 00000000 00000011111111111
Q ss_pred CCC-------C-CCCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHH
Q psy1680 145 GFN-------D-FSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216 (227)
Q Consensus 145 ~~~-------~-~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al 216 (227)
... . ........+|||+|||+++ ++++|...|+.||.|.++.|+.++.|+.++|.|||.|.+..+|.+||
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~--tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDT--TEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccc--cHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHH
Confidence 110 0 1111345799999997666 89999999999999999999999999999999999999999999999
Q ss_pred HHc------CCccccCC
Q psy1680 217 LKD------GRITVDGL 227 (227)
Q Consensus 217 ~~l------~g~~i~gr 227 (227)
+.- .+..|+||
T Consensus 352 ~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 352 EAASPASEDGSVLLDGR 368 (678)
T ss_pred HhcCccCCCceEEEecc
Confidence 977 23667765
No 16
>KOG0117|consensus
Probab=99.94 E-value=8.7e-27 Score=190.39 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=134.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecC-CCCCeecEEEEEeCCHHHHHHHHH--hCCCceeCCeEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDK-ETDRFKGFCYVEFVDVENLRQALL--KDGRITVDGLQV 84 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~-~~~~~~g~afv~f~~~~~a~~al~--~~~~~~~~g~~l 84 (227)
+...++|||+|||.++++++|.+.+++. .|.+|.+..++ +..+++|||||+|.++..|..|-. +++.+.++|+.+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 4567999999999999999999999998 78888887764 456889999999999999999997 677689999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCC
Q psy1680 85 RLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNG 164 (227)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 164 (227)
.|.|+.+....... .....+.|||+||+
T Consensus 241 tVdWAep~~e~ded----------------------------------------------------~ms~VKvLYVRNL~ 268 (506)
T KOG0117|consen 241 TVDWAEPEEEPDED----------------------------------------------------TMSKVKVLYVRNLM 268 (506)
T ss_pred eeeccCcccCCChh----------------------------------------------------hhhheeeeeeeccc
Confidence 99999987753220 00235689999995
Q ss_pred CCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 165 PNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 165 ~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++|++.|+++|+.||.|+.|+.++| ||||+|.+.++|.+||+.+||++|+|.
T Consensus 269 --~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 269 --ESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred --hhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCc
Confidence 45589999999999999999998877 899999999999999999999999984
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=6.7e-26 Score=197.21 Aligned_cols=157 Identities=14% Similarity=0.132 Sum_probs=128.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-h--CCCceeCCeEeEEE
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K--DGRITVDGLQVRLD 87 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~--~~~~~~~g~~l~v~ 87 (227)
+++.|||+|||+.+++++|+++|++| .|..|.++++ ++||||+|.+.++|++||. + ++ ..+.|++|.|.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~-~~l~g~~l~v~ 73 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVP-IYIRGQPAFFN 73 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCC-ceEcCeEEEEE
Confidence 57899999999999999999999999 9999999864 6899999999999999998 3 77 89999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
++..+....... . . .. ........+|||.||+.+.
T Consensus 74 ~s~~~~~~~~~~-~------------~---~~-----------------------------~~~~~~~~~v~v~nl~~~v 108 (481)
T TIGR01649 74 YSTSQEIKRDGN-S------------D---FD-----------------------------SAGPNKVLRVIVENPMYPI 108 (481)
T ss_pred ecCCcccccCCC-C------------c---cc-----------------------------CCCCCceEEEEEcCCCCCC
Confidence 997654222100 0 0 00 0000112468999996555
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++++|+++|++||.|.+|.|+++.. +|+|||+|.+.++|.+|++.|||..|.|
T Consensus 109 --t~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~ 161 (481)
T TIGR01649 109 --TLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYN 161 (481)
T ss_pred --CHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 7899999999999999999988743 4789999999999999999999999965
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=1.3e-24 Score=188.65 Aligned_cols=211 Identities=20% Similarity=0.259 Sum_probs=138.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
..++|||+|||..+++++|+++|+.| .|..|.|+.++.+++++|||||+|.+.++|.+||. |+| ..|.|+.|.|.++
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g-~~i~g~~i~v~~a 263 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG-FELAGRPIKVGYA 263 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC-cEECCEEEEEEEc
Confidence 36899999999999999999999999 99999999999999999999999999999999999 999 9999999999997
Q ss_pred CCCCCCCCC--CCCCC-CC-CCCCC----------------CCCCCCCCCCCCC-----CCCCCCCC-CCCCC--CC-CC
Q psy1680 90 DGKRNDNKG--GFNNK-QN-RGGGS----------------GGMGGNKYNQHQG-----GSFNRDNM-RNNSR--GG-GA 140 (227)
Q Consensus 90 ~~~~~~~~~--~~~~~-~~-~~~~~----------------~~~~~~~~~~~~~-----~~~~~~~~-~~~~~--~~-~~ 140 (227)
......... ..... .. ..+.. +......+..... ....+... ..... .. ..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 633211100 00000 00 00000 0000000000000 00000000 00000 00 00
Q ss_pred CC---CCC-CCCCCCCCCCCcceeccCCCCCCC--------ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcC
Q psy1680 141 SS---GGG-FNDFSRGGEGPGGFRNNNGPNRSN--------SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 141 ~~---~~~-~~~~~~~~~~~~l~v~nl~~~~~~--------~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
.. ... ........+..+|+|.||-.+... ..+||+++|++||.|+.|.|... .+.|++||+|.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~ 419 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSS 419 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECC
Confidence 00 000 000112245678999999543321 24789999999999999998643 457999999999
Q ss_pred HHHHHHHHHHcCCccccCC
Q psy1680 209 VENLRQALLKDGRITVDGL 227 (227)
Q Consensus 209 ~~~a~~Al~~l~g~~i~gr 227 (227)
.++|.+|++.|||+.++||
T Consensus 420 ~e~A~~A~~~lnGr~f~gr 438 (457)
T TIGR01622 420 VDAALAAFQALNGRYFGGK 438 (457)
T ss_pred HHHHHHHHHHhcCcccCCe
Confidence 9999999999999999997
No 19
>KOG0127|consensus
Probab=99.93 E-value=2.3e-25 Score=186.06 Aligned_cols=181 Identities=18% Similarity=0.214 Sum_probs=144.0
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
...+|||++||+.++.++|.++|+.+ +|.++.++.++.++.++||+||.|+-.++++.|++ ..+ ..|.|+.|.|..+
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~-~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQ-SKFEGRILNVDPA 82 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhc-Ccccceecccccc
Confidence 34899999999999999999999999 99999999999999999999999999999999999 899 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
..+.....-.-+. .. .... ... +..+ ....-..+...|.|+|||+.+
T Consensus 83 ~~R~r~e~~~~~e----~~---~veK-----~~~----q~~~---------------~k~~v~~~k~rLIIRNLPf~~-- 129 (678)
T KOG0127|consen 83 KKRARSEEVEKGE----NK---AVEK-----PIE----QKRP---------------TKAKVDLPKWRLIIRNLPFKC-- 129 (678)
T ss_pred cccccchhccccc----ch---hhhc-----ccc----cCCc---------------chhhccCccceEEeecCCccc--
Confidence 8766533100000 00 0000 000 0000 000001234579999998777
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|..+|+.||.|..|.|++.++++.+ |||||.|....+|..||+.+||.+|+||
T Consensus 130 k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR 186 (678)
T KOG0127|consen 130 KKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGR 186 (678)
T ss_pred CcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCc
Confidence 45799999999999999999999885555 9999999999999999999999999998
No 20
>KOG0109|consensus
Probab=99.92 E-value=9.2e-25 Score=169.92 Aligned_cols=136 Identities=20% Similarity=0.371 Sum_probs=125.3
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
.+|||+|||..+++.+|+.+|++| +|.+|.|+ |.||||...+...++.||. |++ .+|+|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhg-YtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHG-YTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhccc-ceecceEEEEEeccc
Confidence 479999999999999999999999 99999999 4599999999999999999 999 999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCCh
Q psy1680 92 KRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSM 171 (227)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 171 (227)
|.. .+.+|+|+|+.+.. +-
T Consensus 74 Ksk-----------------------------------------------------------~stkl~vgNis~tc--tn 92 (346)
T KOG0109|consen 74 KSK-----------------------------------------------------------ASTKLHVGNISPTC--TN 92 (346)
T ss_pred cCC-----------------------------------------------------------CccccccCCCCccc--cC
Confidence 632 45689999997666 66
Q ss_pred hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 172 NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++|+..|++||.|.+|.|++| |+||+|+-.++|..|+..|+|.+++|.
T Consensus 93 ~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 93 QELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred HHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccc
Confidence 889999999999999999887 899999999999999999999999984
No 21
>KOG0117|consensus
Probab=99.91 E-value=1.7e-23 Score=171.21 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=127.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCcee-CCeEeEEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV-DGLQVRLD 87 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~-~g~~l~v~ 87 (227)
...+.|||+.||.++.|++|.-+|++. +|-+++||.|+.+|.++|||||.|.+.+.|+.||+ ||+ .+| .|+.|.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn-~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN-YEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC-ccccCCCEeEEE
Confidence 456999999999999999999999999 99999999999999999999999999999999999 999 877 58889988
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
.+.. .+.|||+|+|.
T Consensus 160 ~Sva---------------------------------------------------------------n~RLFiG~IPK-- 174 (506)
T KOG0117|consen 160 VSVA---------------------------------------------------------------NCRLFIGNIPK-- 174 (506)
T ss_pred Eeee---------------------------------------------------------------cceeEeccCCc--
Confidence 8653 34699999965
Q ss_pred CCChhhHHhhhcccc-ceEEEEEeecCC-CCcccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 168 SNSMNDHGLMVTEVT-TLVSVRLVKDKE-TDRFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g-~i~~v~i~~d~~-t~~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
++++++|.+.+++.+ .|++|.|...++ ..++||||||+|.+...|..|..+|-.-
T Consensus 175 ~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 175 TKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred cccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 448999999999987 677777776554 3478999999999999999998877543
No 22
>KOG0147|consensus
Probab=99.90 E-value=8.2e-25 Score=183.16 Aligned_cols=172 Identities=26% Similarity=0.346 Sum_probs=144.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
+...++||+--|+..++..+|.+||+.+ .|.+|.|+.|+.+++++|.|||+|.+.+++..||.|.| ..+.|-+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsG-qrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSG-QRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcC-CcccCceeEecc
Confidence 4455889999999999999999999999 99999999999999999999999999999999999999 999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
....+........ ... ...-..|-..|||+||.++.
T Consensus 255 sEaeknr~a~~s~--------------------------------a~~-----------~k~~~~p~~rl~vgnLHfNi- 290 (549)
T KOG0147|consen 255 SEAEKNRAANASP--------------------------------ALQ-----------GKGFTGPMRRLYVGNLHFNI- 290 (549)
T ss_pred cHHHHHHHHhccc--------------------------------ccc-----------ccccccchhhhhhcccccCc-
Confidence 7654432110000 000 00000112238999997666
Q ss_pred CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 169 NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+.+|++||.|+.|.+++|.+||.++||||++|.+.++|.+|++.|||++|.||
T Consensus 291 -te~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr 348 (549)
T KOG0147|consen 291 -TEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGR 348 (549)
T ss_pred -hHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCc
Confidence 7899999999999999999999999999999999999999999999999999999997
No 23
>KOG0124|consensus
Probab=99.90 E-value=1.5e-23 Score=167.92 Aligned_cols=165 Identities=16% Similarity=0.276 Sum_probs=139.6
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
++||||.|.+.+.|+.|+..|..| +|..|.+.+|+.|++.+|||||+|.-.+.|+.|++ +|| ..++|+.|+|.....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg-~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG-QMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc-ccccCccccccCCCC
Confidence 789999999999999999999999 99999999999999999999999999999999999 999 999999999985332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCCh
Q psy1680 92 KRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSM 171 (227)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 171 (227)
-..... -.+.. ......-+.|||..+.+++ ++
T Consensus 193 mpQAQp-------------------iID~v---------------------------qeeAk~fnRiYVaSvHpDL--Se 224 (544)
T KOG0124|consen 193 MPQAQP-------------------IIDMV---------------------------QEEAKKFNRIYVASVHPDL--SE 224 (544)
T ss_pred Ccccch-------------------HHHHH---------------------------HHHHHhhheEEeeecCCCc--cH
Confidence 111000 00000 0000123579999997777 68
Q ss_pred hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 172 NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+||+..|+.||.|..|.|.+++.++.++||+|++|.+......|+..||-+.++|.
T Consensus 225 ~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ 280 (544)
T KOG0124|consen 225 TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ 280 (544)
T ss_pred HHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc
Confidence 99999999999999999999999999999999999999999999999999888873
No 24
>KOG0123|consensus
Probab=99.88 E-value=6.3e-22 Score=165.25 Aligned_cols=140 Identities=21% Similarity=0.312 Sum_probs=126.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
..|||+ +++|+..|.++|+.+ ++..+++.+|. | +.|||||.|.+.++|.+||. +|. ..+.|++|+|-|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~-~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNF-DVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCC-cccCCcEEEeehhcc
Confidence 468998 899999999999999 99999999997 6 99999999999999999999 999 999999999999753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCCh
Q psy1680 92 KRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSM 171 (227)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 171 (227)
... .+||.||+++. +.
T Consensus 75 d~~--------------------------------------------------------------~~~i~nl~~~~--~~ 90 (369)
T KOG0123|consen 75 DPS--------------------------------------------------------------LVFIKNLDESI--DN 90 (369)
T ss_pred CCc--------------------------------------------------------------eeeecCCCccc--Cc
Confidence 111 28999997655 56
Q ss_pred hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 172 NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+|.++|+.||.|.+|++..|.+ | ++|| ||+|++.+.|.+|++.+||..++|.
T Consensus 91 ~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 91 KSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred HHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 88999999999999999999965 5 9999 9999999999999999999998773
No 25
>KOG0110|consensus
Probab=99.87 E-value=6.7e-22 Score=170.01 Aligned_cols=163 Identities=27% Similarity=0.376 Sum_probs=135.5
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCC---CeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETD---RFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~---~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
++|||.||++.+|.++|+..|... .|..+.|...+... .+.|||||+|.+.++|+.|++ |+| +.|+|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg-tvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG-TVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC-ceecCceEEEEe
Confidence 449999999999999999999999 99999887654321 355999999999999999999 999 999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
+..+.....+ ...+.......|.|+|+|+.+
T Consensus 595 S~~k~~~~~g------------------------------------------------K~~~~kk~~tKIlVRNipFeA- 625 (725)
T KOG0110|consen 595 SENKPASTVG------------------------------------------------KKKSKKKKGTKILVRNIPFEA- 625 (725)
T ss_pred ccCccccccc------------------------------------------------cccccccccceeeeeccchHH-
Confidence 8832221110 000111235689999998766
Q ss_pred CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 169 NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+..+++++|+.||.|.+|+|++....+.++|||||+|.++.+|.+|+++|.+..|-||
T Consensus 626 -t~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGR 683 (725)
T KOG0110|consen 626 -TKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGR 683 (725)
T ss_pred -HHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceech
Confidence 7899999999999999999999876677899999999999999999999999888776
No 26
>KOG0105|consensus
Probab=99.87 E-value=1.1e-20 Score=138.45 Aligned_cols=168 Identities=24% Similarity=0.402 Sum_probs=126.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
..+++|||+|||.++.+.+|+.+|-+| .|..|.+... -....||||+|.+..+|+.||. -+| ..++|+.|+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdG-Ydydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDG-YDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccc-cccCcceEEEEe
Confidence 457899999999999999999999999 9999988432 3345799999999999999999 999 999999999999
Q ss_pred cCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCC
Q psy1680 89 ADGKRNDN--KGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPN 166 (227)
Q Consensus 89 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 166 (227)
+..-.... .+.+.. ++++++.++.... .++ --+...+.|..||+.
T Consensus 80 prggr~s~~~~G~y~g-ggrgGgg~gg~rg-------------------------------pps-rrSe~RVvVsGLp~S 126 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSG-GGRGGGGGGGRRG-------------------------------PPS-RRSEYRVVVSGLPPS 126 (241)
T ss_pred ccCCCcccccccccCC-CCCCCCCCCcccC-------------------------------Ccc-cccceeEEEecCCCC
Confidence 87543211 111111 1111111000000 000 012346899999888
Q ss_pred CCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 167 RSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 167 ~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
.+| .||++...+-|.|....+.+| |++.|+|.+.||.+.|+.+|....+
T Consensus 127 gSW--QDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 127 GSW--QDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred Cch--HHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 866 789999999999999999888 6899999999999999999986654
No 27
>KOG4205|consensus
Probab=99.86 E-value=6.8e-22 Score=159.95 Aligned_cols=153 Identities=22% Similarity=0.333 Sum_probs=135.3
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~ 90 (227)
..++|||++|++.++++.|+++|.+| +|.++.+++|+.+++++||+||+|.+.+.+..+|.... ..|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~-h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART-HKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc-cccCCccccceecc
Confidence 78999999999999999999999999 99999999999999999999999999999999998666 78999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCC
Q psy1680 91 GKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNS 170 (227)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 170 (227)
++......... ....++||+.||.++ +
T Consensus 84 ~r~~~~~~~~~---------------------------------------------------~~tkkiFvGG~~~~~--~ 110 (311)
T KOG4205|consen 84 SREDQTKVGRH---------------------------------------------------LRTKKIFVGGLPPDT--T 110 (311)
T ss_pred Ccccccccccc---------------------------------------------------cceeEEEecCcCCCC--c
Confidence 77654321110 135689999997655 7
Q ss_pred hhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHH
Q psy1680 171 MNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 218 (227)
Q Consensus 171 ~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~ 218 (227)
++++++.|++||.|..+.++.|..+.+++||+||.|.+.+.+.+++..
T Consensus 111 e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~ 158 (311)
T KOG4205|consen 111 EEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ 158 (311)
T ss_pred hHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc
Confidence 899999999999999999999999999999999999999988887653
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=6.2e-20 Score=160.51 Aligned_cols=81 Identities=14% Similarity=0.310 Sum_probs=76.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
..++|||+|||.++++++|+++|+.| .|..+.|++++.+++++|||||+|.+.++|.+||+ +|+ ..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg-~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL-FDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC-CeeCCeEEEEEec
Confidence 45799999999999999999999999 99999999999999999999999999999999999 999 9999999999998
Q ss_pred CCCC
Q psy1680 90 DGKR 93 (227)
Q Consensus 90 ~~~~ 93 (227)
..+.
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 7644
No 29
>KOG0146|consensus
Probab=99.84 E-value=9.8e-21 Score=146.10 Aligned_cols=211 Identities=19% Similarity=0.277 Sum_probs=143.3
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC--eEeEEE
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVRLD 87 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g--~~l~v~ 87 (227)
+.++|||+-|...-.|+|++.+|..| .+.+|.+.+... |.+||+|||.|.+..+|+.||. |+|-..+-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999 999999998754 8899999999999999999999 998556665 468899
Q ss_pred ecCCCCCCC--C--------CCCCC-------------------------------------------------------
Q psy1680 88 IADGKRNDN--K--------GGFNN------------------------------------------------------- 102 (227)
Q Consensus 88 ~~~~~~~~~--~--------~~~~~------------------------------------------------------- 102 (227)
++...+++. + +.+.+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 987544321 0 00000
Q ss_pred CC----CCCCCCCC------------CCCCCCCCCCCC----------------CCCCCCC-----------CCCCC---
Q psy1680 103 KQ----NRGGGSGG------------MGGNKYNQHQGG----------------SFNRDNM-----------RNNSR--- 136 (227)
Q Consensus 103 ~~----~~~~~~~~------------~~~~~~~~~~~~----------------~~~~~~~-----------~~~~~--- 136 (227)
.+ ......++ ...+.+...... .+....+ .....
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 00 00000000 000001000000 0000000 00000
Q ss_pred --CCCCCCCCCC--------CCCCCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEE
Q psy1680 137 --GGGASSGGGF--------NDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEF 206 (227)
Q Consensus 137 --~~~~~~~~~~--------~~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F 206 (227)
..++.-...+ .....++.+.+|||..||... ...+|-++|-+||.|.+.++..|+.|+.||=|+||.|
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEF--gDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEF--GDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhh--ccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 0000000011 111235778999999998666 4577999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHcCCcccc
Q psy1680 207 VDVENLRQALLKDGRITVD 225 (227)
Q Consensus 207 ~~~~~a~~Al~~l~g~~i~ 225 (227)
+++..|++||.+|||+.|+
T Consensus 335 DNp~SaQaAIqAMNGFQIG 353 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIG 353 (371)
T ss_pred CCchhHHHHHHHhcchhhh
Confidence 9999999999999999885
No 30
>KOG0144|consensus
Probab=99.84 E-value=2e-20 Score=152.80 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe--EeEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL--QVRL 86 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~--~l~v 86 (227)
...++|||+-|+..+||.+++++|++| .|++|.|++|.. +.+||+|||.|.+.+.|..||+ +|+-..+.|+ +|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 347899999999999999999999999 999999999954 8999999999999999999999 9986778876 8999
Q ss_pred EecCCCCCC
Q psy1680 87 DIADGKRND 95 (227)
Q Consensus 87 ~~~~~~~~~ 95 (227)
+++.+++.+
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999987653
No 31
>KOG0123|consensus
Probab=99.82 E-value=1.9e-19 Score=150.45 Aligned_cols=162 Identities=18% Similarity=0.300 Sum_probs=136.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
.......|||.||++.++.++|.++|+.| +|..|++..+.. | ++|| ||+|.+++.|.+||+ +|| ..+.++.|.|
T Consensus 72 s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng-~ll~~kki~v 147 (369)
T KOG0123|consen 72 SQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNG-MLLNGKKIYV 147 (369)
T ss_pred hccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcC-cccCCCeeEE
Confidence 33444449999999999999999999999 999999999865 4 8999 999999999999999 999 9999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCC
Q psy1680 87 DIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPN 166 (227)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 166 (227)
.....+......... ....-..++|.|++.
T Consensus 148 g~~~~~~er~~~~~~-------------------------------------------------~~~~~t~v~vk~~~~- 177 (369)
T KOG0123|consen 148 GLFERKEEREAPLGE-------------------------------------------------YKKRFTNVYVKNLEE- 177 (369)
T ss_pred eeccchhhhcccccc-------------------------------------------------hhhhhhhhheecccc-
Confidence 998776654321100 001234578999964
Q ss_pred CCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 167 RSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 167 ~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
+.+.+.|..+|+.+|.|.++.++++.. ++++||+||.|.++++|..|++.|++..++|
T Consensus 178 -~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 178 -DSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIFGD 235 (369)
T ss_pred -ccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcCCc
Confidence 447889999999999999999999955 7799999999999999999999999998763
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=8.2e-19 Score=128.57 Aligned_cols=86 Identities=24% Similarity=0.445 Sum_probs=80.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
...+++|||+|||+.+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|+.||+ +++ ..|+|+.|+|.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng-~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG-KELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 4567899999999999999999999999 99999999999999999999999999999999998 999 99999999999
Q ss_pred ecCCCCCCC
Q psy1680 88 IADGKRNDN 96 (227)
Q Consensus 88 ~~~~~~~~~ 96 (227)
++.++....
T Consensus 110 ~a~~~~~~~ 118 (144)
T PLN03134 110 PANDRPSAP 118 (144)
T ss_pred eCCcCCCCC
Confidence 998765543
No 33
>KOG4206|consensus
Probab=99.79 E-value=7.1e-18 Score=127.83 Aligned_cols=195 Identities=18% Similarity=0.245 Sum_probs=136.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHh----cccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVER----FFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 82 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~----~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~ 82 (227)
...+..+|||.||+..+..++|+. +|++| .|.+|... .+.+.+|.|||.|.+.+.|..|+. |+| +.+.|+
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~g-fpFygK 80 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQG-FPFYGK 80 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcC-CcccCc
Confidence 345566999999999999999887 99999 99999886 447789999999999999999999 999 999999
Q ss_pred EeEEEecCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcce
Q psy1680 83 QVRLDIADGKRNDN---KGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGF 159 (227)
Q Consensus 83 ~l~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (227)
.++|++|..++..- .+.+..+..+.....-.....-....+..+. ....+. +..+ .....++..+||
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~------~~~~~~---p~p~-~~~~~ppn~ilf 150 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYN------MNRMNL---PPPF-LAQMAPPNNILF 150 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccc------cccccC---CCCc-cccCCCCceEEE
Confidence 99999998776421 1222222111000000000000000000000 000000 0001 122246788999
Q ss_pred eccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 160 RNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 160 v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
+.|+|... +.+.+..+|+.|.....|+++... ++.|||+|.+...|..|+..++|..|
T Consensus 151 ~~niP~es--~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 151 LTNIPSES--ESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred EecCCcch--hHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhcccee
Confidence 99996444 678889999999999999998865 58999999999999999999999876
No 34
>KOG0148|consensus
Probab=99.79 E-value=2.9e-19 Score=138.11 Aligned_cols=129 Identities=17% Similarity=0.292 Sum_probs=104.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
+...++|||+||...+||+-|-.+|.+. .+..++|+.| .|+|.+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 4567999999999999999999999999 9999999876 233444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
+........... ...--+||+.|.+..
T Consensus 48 a~~p~nQsk~t~----------------------------------------------------~~hfhvfvgdls~eI- 74 (321)
T KOG0148|consen 48 ATAPGNQSKPTS----------------------------------------------------NQHFHVFVGDLSPEI- 74 (321)
T ss_pred ccCcccCCCCcc----------------------------------------------------ccceeEEehhcchhc-
Confidence 433211111000 012247999996555
Q ss_pred CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 169 NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+-++|++.|.+||.|.+++|++|..|+++||||||.|-+.++|+.||+.|||.=|++|
T Consensus 75 -~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 75 -DNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred -chHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 5688999999999999999999999999999999999999999999999999988876
No 35
>KOG1457|consensus
Probab=99.76 E-value=6e-17 Score=122.21 Aligned_cols=206 Identities=16% Similarity=0.210 Sum_probs=125.3
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEee-cCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC---CeEeE
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVK-DKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD---GLQVR 85 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~-~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~---g~~l~ 85 (227)
.-++|||.+||.++...+|..+|..| ..+...|.. ++...-++-+||+.|.+.+.|..||. ||| ..|+ +..|+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG-vrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG-VRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC-eeeccccCceeE
Confidence 35999999999999999999999999 777666643 33334456799999999999999999 999 9986 56888
Q ss_pred EEecCCCCCCC-CCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCCC---------CCCCCCCC---------CCCCC
Q psy1680 86 LDIADGKRNDN-KGGFNNKQN---RGGGSGGM--GGNKYNQHQGGSFNR---------DNMRNNSR---------GGGAS 141 (227)
Q Consensus 86 v~~~~~~~~~~-~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~---------~~~~~ 141 (227)
+++++...... ..+.+..+. -.-...+. ....+..+-....+. +....... ..+..
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 88876533211 111110000 00000000 000000000000000 00000000 00000
Q ss_pred CC-CC---CCC-CCCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHH
Q psy1680 142 SG-GG---FND-FSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216 (227)
Q Consensus 142 ~~-~~---~~~-~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al 216 (227)
+. .+ ... -.......||||.||++++ +||+|+++|+.|.....++|.-. |. .-.|||+|++.+.|..||
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~--~ed~l~~~~~~~~gf~~l~~~~~---~g-~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNC--TEDELKQLLSRYPGFHILKIRAR---GG-MPVAFADFEEIEQATDAM 265 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCC--CHHHHHHHHHhCCCceEEEEecC---CC-cceEeecHHHHHHHHHHH
Confidence 00 00 000 0111234799999998877 78999999999987777766432 22 237999999999999999
Q ss_pred HHcCCccc
Q psy1680 217 LKDGRITV 224 (227)
Q Consensus 217 ~~l~g~~i 224 (227)
..|+|..|
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99999887
No 36
>KOG0147|consensus
Probab=99.75 E-value=1.4e-17 Score=140.00 Aligned_cols=206 Identities=21% Similarity=0.242 Sum_probs=134.7
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
.+|||+||.+++++++|+.+|+.| .|..|.+++|..||+++||+||+|.+.++|.+|++ +|| +.|-|+.|+|.....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-felAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-FELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc-ceecCceEEEEEeee
Confidence 349999999999999999999999 99999999998899999999999999999999999 999 999999999987665
Q ss_pred CCCCCCC--C---CC--CCCCCCCCCCCCCCCC----CCCCCCC----CCCC-----CCCCCCCCCCCCCCC-CCC---C
Q psy1680 92 KRNDNKG--G---FN--NKQNRGGGSGGMGGNK----YNQHQGG----SFNR-----DNMRNNSRGGGASSG-GGF---N 147 (227)
Q Consensus 92 ~~~~~~~--~---~~--~~~~~~~~~~~~~~~~----~~~~~~~----~~~~-----~~~~~~~~~~~~~~~-~~~---~ 147 (227)
+-..... . +. ...+..-+.++ ..+ +....+. .+.. .........+..... ... -
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g--~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGG--RNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA 435 (549)
T ss_pred ecccccccccccccchhhcccccccccc--HHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc
Confidence 4322111 0 00 00111111111 000 0000000 0000 000000000000000 000 0
Q ss_pred CCCCCCCCCcceeccCCCCCC--------CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 148 DFSRGGEGPGGFRNNNGPNRS--------NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 148 ~~~~~~~~~~l~v~nl~~~~~--------~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
.+.-..++..+.+.|+=.+.+ +..+|+.+.|++||.|.-|.+.+. +-|+.||.|.+.+.|..|+.+|
T Consensus 436 ~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~al 510 (549)
T KOG0147|consen 436 SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKAL 510 (549)
T ss_pred ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHH
Confidence 111114566777777732221 245889999999999988887444 2399999999999999999999
Q ss_pred CCccccCC
Q psy1680 220 GRITVDGL 227 (227)
Q Consensus 220 ~g~~i~gr 227 (227)
||.=++||
T Consensus 511 hgrWF~gr 518 (549)
T KOG0147|consen 511 HGRWFAGR 518 (549)
T ss_pred hhhhhccc
Confidence 99999886
No 37
>KOG4211|consensus
Probab=99.75 E-value=4.4e-17 Score=135.46 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=127.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
+......|-+++||+++|++||.+||+.+.|..+.+. +.+|+..|-|||+|.+.+++++||+.+. ..+..+-|+|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~AlkkdR-~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCGIENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKKDR-ESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCceeEEEEe--ccCCCcCcceEEEeechHHHHHHHHhhH-HHhCCceEEEEc
Confidence 4456788889999999999999999999888886665 4668999999999999999999999999 999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
+.......-... .+ +.......+|-++.||+.+
T Consensus 83 ~~~~e~d~~~~~---------------------~g-------------------------~~s~~~d~vVRLRGLPfsc- 115 (510)
T KOG4211|consen 83 AGGAEADWVMRP---------------------GG-------------------------PNSSANDGVVRLRGLPFSC- 115 (510)
T ss_pred cCCccccccccC---------------------CC-------------------------CCCCCCCceEEecCCCccC-
Confidence 876554211000 00 0000234578899997766
Q ss_pred CChhhHHhhhccccceEE-EEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 169 NSMNDHGLMVTEVTTLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~-v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
+++||.++|+..-.+.. |.++.|+ .+++.|-|||.|++.+.|+.||..+.
T Consensus 116 -te~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhr 166 (510)
T KOG4211|consen 116 -TEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHR 166 (510)
T ss_pred -cHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHH
Confidence 89999999998876665 5567775 48899999999999999999998764
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=6.7e-18 Score=123.75 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=67.7
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.+|||+|||+.+ ++++|+++|++||.|.+|.|++|+.|++++|||||+|.+.++|++|++.||+..|+||
T Consensus 33 ~~~~lfVgnL~~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 33 MSTKLFIGGLSWGT--DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 46789999997665 7999999999999999999999999999999999999999999999999999999986
No 39
>KOG4212|consensus
Probab=99.72 E-value=8.2e-16 Score=126.26 Aligned_cols=209 Identities=22% Similarity=0.269 Sum_probs=139.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
+....+.+||.|||++....+|+.+|.+- +|..|.+..| .+++++|+|.|+|++++.+++|++ ||. +++.|++|.
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk-~~~~GR~l~ 117 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNK-YEVNGRELV 117 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhh-ccccCceEE
Confidence 34555779999999999999999999866 8999999998 569999999999999999999999 999 999999999
Q ss_pred EEecCCCCCCCCC--------CCCCCCC---------CCCCCCCCCCC----CCCCCCCCCCCCCCCC--CCCCCCCCCC
Q psy1680 86 LDIADGKRNDNKG--------GFNNKQN---------RGGGSGGMGGN----KYNQHQGGSFNRDNMR--NNSRGGGASS 142 (227)
Q Consensus 86 v~~~~~~~~~~~~--------~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~ 142 (227)
|+.....+..+.+ ++..... ..++.++.... +-..+.+.-.+...+. .....++..+
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 9887654332211 1100000 00000110000 0000000000000000 0000111111
Q ss_pred CC--CCCCC---CCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHH
Q psy1680 143 GG--GFNDF---SRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 217 (227)
Q Consensus 143 ~~--~~~~~---~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~ 217 (227)
.. .|... -..|..+.+||.||.+.+ ..+.|++.|.--|.|+.|.+-.|++ |.++|++.++|..+-+|..|+.
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~fvanl~~~v--g~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVFVANLDYKV--GNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred cchhhhhhhccCCCCCccceeeeecccccc--chHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHH
Confidence 11 11110 123556789999996666 4577999999999999999999977 8999999999999999999999
Q ss_pred HcCCc
Q psy1680 218 KDGRI 222 (227)
Q Consensus 218 ~l~g~ 222 (227)
.+++-
T Consensus 275 ml~~~ 279 (608)
T KOG4212|consen 275 MLDRQ 279 (608)
T ss_pred hhccC
Confidence 99863
No 40
>KOG1548|consensus
Probab=99.68 E-value=3.1e-16 Score=125.23 Aligned_cols=193 Identities=16% Similarity=0.186 Sum_probs=130.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeE--------EEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCcee
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLV--------SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV 79 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~--------~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~ 79 (227)
......|||.|||.++|.+++.++|+++ -|. .|++.++.. |..+|-|++.|...+++..|+. |++ ..|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe-~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDE-DEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCc-ccc
Confidence 4455779999999999999999999988 443 477888744 9999999999999999999999 999 999
Q ss_pred CCeEeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcce
Q psy1680 80 DGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGF 159 (227)
Q Consensus 80 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (227)
.|+.|+|..|.-..... +...+...+. .....++...+...+ ++. ......++.....+|.
T Consensus 209 rg~~~rVerAkfq~Kge---~~~~~k~k~k--~~~~kk~~k~q~k~~-----------dw~---pd~~~~sk~r~~~tVi 269 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGE---YDASKKEKGK--CKDKKKLKKQQQKLL-----------DWR---PDRDDPSKARADRTVI 269 (382)
T ss_pred cCcEEEEehhhhhhccC---cCcccccccc--cccHHHHHHHHHhhc-----------ccC---CCccccccccCCcEEE
Confidence 99999999986322211 1000000000 000000000000000 000 0001122223456788
Q ss_pred eccCC--CC-------CCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 160 RNNNG--PN-------RSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 160 v~nl~--~~-------~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.|+= .. .....++|++.|++||.|.+|.|.-. .+.|.+-|.|.+.++|..|++.|+|+-++||
T Consensus 270 ~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgR 342 (382)
T KOG1548|consen 270 LKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGR 342 (382)
T ss_pred eeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecce
Confidence 88882 11 12345788889999999999987643 2479999999999999999999999999997
No 41
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=3.8e-16 Score=131.34 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
.+.+|||+|||+.+++++|+++|++| .|..+.|++|+.|+.++|||||+|.+.++|.+||. ||| ..|+|+.|+|.+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG-~~~~gr~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG-YTLGNRVLQVSFK 346 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEEc
Confidence 34579999999999999999999999 99999999999999999999999999999999999 999 9999999999998
Q ss_pred CCCC
Q psy1680 90 DGKR 93 (227)
Q Consensus 90 ~~~~ 93 (227)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 8764
No 42
>KOG0106|consensus
Probab=99.68 E-value=1e-16 Score=122.63 Aligned_cols=158 Identities=25% Similarity=0.319 Sum_probs=118.2
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
.+|||++||+.+.+.+|..+|..| .+.++.+. .||+||+|.+..+|..|+. +++ ..|.+-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~-~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDG-KELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcC-ceecceeeeeecccc
Confidence 479999999999999999999999 99999885 5799999999999999998 999 999998888888876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCCh
Q psy1680 92 KRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSM 171 (227)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 171 (227)
.....+.+ ++++... +..... ........++|.+++... ..
T Consensus 73 ~~~~~g~~----------~~g~r~~-~~~~~~--------------------------~p~~s~~r~~~~~~~~r~--~~ 113 (216)
T KOG0106|consen 73 KRRGRGRP----------RGGDRRS-DSRRYR--------------------------PPSRTHFRLIVRNLSLRV--SW 113 (216)
T ss_pred cccccCCC----------CCCCccc-hhhccC--------------------------Ccccccceeeeccchhhh--hH
Confidence 54332100 0110000 000000 000123456677774333 45
Q ss_pred hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 172 NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+|.+.|+++|.++...+ ..+++||+|.+.++|.+|+++|+|..+.|+
T Consensus 114 qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~ 161 (216)
T KOG0106|consen 114 QDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGR 161 (216)
T ss_pred HHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCc
Confidence 889999999998866655 246899999999999999999999999875
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=3.5e-16 Score=100.55 Aligned_cols=67 Identities=18% Similarity=0.354 Sum_probs=62.5
Q ss_pred ceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 158 GFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 158 l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|||+|||.++ ++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|++|++.++|..|+|+
T Consensus 1 l~v~nlp~~~--t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDV--TEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTS--SHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcC--CHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 6999997666 78999999999999999999998 6689999999999999999999999999999885
No 44
>KOG0110|consensus
Probab=99.65 E-value=2.7e-15 Score=129.69 Aligned_cols=200 Identities=19% Similarity=0.197 Sum_probs=127.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
......|+|+|||..+..++|..+|..| +|..+.++.. | -.++|.|.+..+|..|.+ +.. ..+...++.+.
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklay-sr~k~~plyle 454 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAY-SRFKSAPLYLE 454 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhch-hhhccCccccc
Confidence 4455789999999999999999999999 9999966521 1 259999999999999999 888 88888888887
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CcceeccCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGS-GGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEG-PGGFRNNNGP 165 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~nl~~ 165 (227)
++....-...+....-....... ......+.....+.. .........++ ...-...... .+|||.||
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v------~eD~d~te~ss---~a~~a~~~~~~t~lfvkNl-- 523 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQV------EEDKDPTEESS---LARVAEDEETETKLFVKNL-- 523 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccc------cccCCcccccc---chhhhhccccchhhhhhcC--
Confidence 76422111000000000000000 000000000000000 00000000000 0000001122 23999999
Q ss_pred CCCCChhhHHhhhccccceEEEEEeecCCCC---cccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 166 NRSNSMNDHGLMVTEVTTLVSVRLVKDKETD---RFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 166 ~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~---~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.+++.++|...|...|.|.+|.|.+.++.- .|.|||||+|.++++|++|++.|+|..|+|+
T Consensus 524 nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH 588 (725)
T KOG0110|consen 524 NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH 588 (725)
T ss_pred CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc
Confidence 6677899999999999999999887765422 3679999999999999999999999999985
No 45
>KOG0149|consensus
Probab=99.64 E-value=3.1e-16 Score=119.39 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
...-++||||||++.++.+.|+++|++| +|++..|+.|+.++++|||+||+|++.++|.+||+-.. ..|+||+..+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 3455899999999999999999999999 99999999999999999999999999999999999666 799999988887
Q ss_pred cCC
Q psy1680 89 ADG 91 (227)
Q Consensus 89 ~~~ 91 (227)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 653
No 46
>KOG0121|consensus
Probab=99.63 E-value=7.1e-16 Score=106.68 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
+...+++|||+||++.++|++|.++|+.. +|..|.+-.|+.+..++|||||+|-+.++|..||. +++ +.+++++|.+
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisg-trLddr~ir~ 110 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISG-TRLDDRPIRI 110 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhcc-Ccccccceee
Confidence 35678999999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecCCCC
Q psy1680 87 DIADGKR 93 (227)
Q Consensus 87 ~~~~~~~ 93 (227)
.+.-.-.
T Consensus 111 D~D~GF~ 117 (153)
T KOG0121|consen 111 DWDAGFV 117 (153)
T ss_pred eccccch
Confidence 9965433
No 47
>KOG0120|consensus
Probab=99.63 E-value=8.7e-16 Score=130.55 Aligned_cols=183 Identities=22% Similarity=0.253 Sum_probs=138.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
...+++||++||...++.++.++...| ++....++.+..+|.++||||.+|.+......|+. +|| ..++++.|.|..
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG-m~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG-MQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch-hhhcCceeEeeh
Confidence 445899999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCC--C-
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNG--P- 165 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~--~- 165 (227)
+................ ...+. .. ......+.+..+|.+.|+= .
T Consensus 366 A~~g~~~~~~~~~~~~~--------------~~~~i---------------~~----~~~q~~g~~t~Vl~L~n~Vt~de 412 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQS--------------QVPGI---------------PL----LMTQMAGIPTEVLCLTNVVTPDE 412 (500)
T ss_pred hhccchhccccCCcccc--------------ccccc---------------hh----hhcccCCCcchhhhhhhcCCHHH
Confidence 87644322111100000 00000 00 0001122456677777762 1
Q ss_pred -----CCCCChhhHHhhhccccceEEEEEeecCCCCc---ccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 166 -----NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDR---FKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 166 -----~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~---~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.+..++++..|++||.|.+|.|+++...+. ..|-.||+|.+.+++++|+++|.|..++||
T Consensus 413 Lkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 413 LKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 12234477888999999999999999832232 357889999999999999999999999987
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=2.3e-15 Score=96.66 Aligned_cols=68 Identities=31% Similarity=0.687 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 16 AFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 16 l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
|||+|||.++|+++|+++|++| .+..+.++.+ .++..+++|||+|.+.++|.+|++ +++ ..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g-~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNG-KKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCC-CEECccCcC
Confidence 7999999999999999999999 9999999988 778999999999999999999999 999 999999885
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=1e-14 Score=127.67 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=95.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC---CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~---~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..++|||+||+.++++++|+++|++| .|.+|.++ ++||||+|.+.++|.+||+ +|+ ..|+|+.|+|.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG-~~i~Gr~I~V~ 302 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNG-KELEGSEIEVT 302 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 45789999999999999999999999 67777765 4699999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
++.++.......+. ++ .++++........ . .+ ..-.+.+.+++++|++++.
T Consensus 303 ~Akp~~~~~~~~~~--rg-~gg~~~~~~~~~~---~------------~g-----------~~~sp~s~~~~~g~~~~~~ 353 (578)
T TIGR01648 303 LAKPVDKKSYVRYT--RG-TGGRGKERQAARQ---S------------LG-----------QVYDPASRSLAYEDYYYHP 353 (578)
T ss_pred EccCCCcccccccc--cc-cCCCccccccccc---c------------cC-----------cccCccccccccccccccc
Confidence 99876543211110 00 0000010000000 0 00 0011457789999997666
Q ss_pred CCChhhHHhhhccccceE
Q psy1680 168 SNSMNDHGLMVTEVTTLV 185 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~ 185 (227)
+++.++++|..+|.|.
T Consensus 354 --~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 354 --PYAPSLHFPRMPGPIR 369 (578)
T ss_pred --cccchhhccccCcccc
Confidence 5678999999998755
No 50
>KOG0122|consensus
Probab=99.61 E-value=2.9e-15 Score=114.61 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
...++|-|.||+.+++|.+|+++|.+| .|..+.|.+|+.||.++|||||.|.+.++|.+||+ ||| +-++.-.|+|+|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG-~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG-YGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC-cccceEEEEEEe
Confidence 467889999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCCC
Q psy1680 89 ADGK 92 (227)
Q Consensus 89 ~~~~ 92 (227)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 51
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=9.7e-15 Score=121.56 Aligned_cols=83 Identities=22% Similarity=0.413 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC--eEeEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVRL 86 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g--~~l~v 86 (227)
...++|||+|||..+|+++|+++|++| .|..+.|++++.++++++||||+|.+.++|++||+ |++ ..+.+ ++|.|
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng-~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN-VIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC-CccCCCceeEEE
Confidence 346789999999999999999999999 99999999999999999999999999999999999 999 88866 68999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.++.....
T Consensus 270 ~~a~~~~~ 277 (346)
T TIGR01659 270 RLAEEHGK 277 (346)
T ss_pred EECCcccc
Confidence 99876543
No 52
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=3.6e-15 Score=96.04 Aligned_cols=67 Identities=27% Similarity=0.420 Sum_probs=61.5
Q ss_pred ceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 158 GFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 158 l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|||+|||+.. ++++|+.+|+.||.|..+.+.++++ +.++|+|||+|.+.++|.+|++.++|..|+||
T Consensus 1 v~i~nlp~~~--~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPST--TEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT----HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCC--CHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 6899997655 7899999999999999999999977 99999999999999999999999999999986
No 53
>KOG0122|consensus
Probab=99.58 E-value=7.6e-15 Score=112.29 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=65.3
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
...+|-|.|||.+. ++++|.++|.+||.|..|.|.+|++||.++|||||+|.+.++|.+|++.|||+=++
T Consensus 188 D~~tvRvtNLsed~--~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 188 DEATVRVTNLSEDM--REDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD 257 (270)
T ss_pred ccceeEEecCcccc--ChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc
Confidence 56789999996655 78999999999999999999999999999999999999999999999999998765
No 54
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=2.3e-14 Score=92.28 Aligned_cols=68 Identities=35% Similarity=0.692 Sum_probs=62.7
Q ss_pred EEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 16 AFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 16 l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
|||+|||+.+++++|+++|+.+ .|..+.+..++. +.++++|||+|.+.++|.+|+. +++ ..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~-~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG-KEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC-cEECCEEcC
Confidence 7999999999999999999999 999999999877 8999999999999999999999 888 999999874
No 55
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=5.7e-14 Score=113.23 Aligned_cols=173 Identities=20% Similarity=0.268 Sum_probs=123.4
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~ 90 (227)
.++|||+|||..+++++|+++|..| .+..+.+..++.+++++|||||.|.+.++|..|++ +++ ..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~-~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG-KELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCC-CeECCceeEeeccc
Confidence 6999999999999999999999999 99999999999899999999999999999999999 999 99999999999976
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 91 G-KRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 91 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
. ............ .. +... . .............+++.+++...
T Consensus 194 ~~~~~~~~~~~~~~-----------~~-~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~~~-- 237 (306)
T COG0724 194 PASQPRSELSNNLD-----------AS-FAKK--------L--------------SRGKALLLEKSDNLYVGNLPLKT-- 237 (306)
T ss_pred cccccccccccccc-----------hh-hhcc--------c--------------cccccccccccceeecccccccc--
Confidence 4 111000000000 00 0000 0 00001111345678888886544
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
+..++...|..+|.+..+.+.............++.+....++..+.......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (306)
T COG0724 238 AEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKK 290 (306)
T ss_pred chhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccce
Confidence 67889999999999977777666554445555666666666666655544443
No 56
>KOG0149|consensus
Probab=99.57 E-value=3.2e-15 Score=113.90 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=63.3
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
-.+|||++|+ +.+..|.|+..|+.||.|+++.|+.|+.||+|||||||+|.+.+.|.+|++--| ..||||
T Consensus 12 ~TKifVggL~--w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR 81 (247)
T KOG0149|consen 12 FTKIFVGGLA--WETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGR 81 (247)
T ss_pred EEEEEEcCcc--cccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccccc
Confidence 3579999995 555789999999999999999999999999999999999999999999998665 778887
No 57
>KOG0126|consensus
Probab=99.54 E-value=2.3e-15 Score=110.27 Aligned_cols=82 Identities=27% Similarity=0.525 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
..+.-|||+|||+..||.||.-.|++| .|+.|.+++|+.||+++||||+.|.+..+...|+. +|| +.|.|+.|+|..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG-iki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG-IKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC-ceecceeEEeee
Confidence 567889999999999999999999999 99999999999999999999999999999999998 999 999999999988
Q ss_pred cCCCC
Q psy1680 89 ADGKR 93 (227)
Q Consensus 89 ~~~~~ 93 (227)
....+
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 65443
No 58
>KOG0124|consensus
Probab=99.54 E-value=5.5e-13 Score=107.64 Aligned_cols=79 Identities=14% Similarity=0.334 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
+.-++|||..+.++.+++||+..|+.| +|..|.+-+++.++..+||+||+|.+..+...|+. +|- +.++|.-|+|..
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNl-FDLGGQyLRVGk 286 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL-FDLGGQYLRVGK 286 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcch-hhcccceEeccc
Confidence 344899999999999999999999999 99999999999999999999999999999999999 999 999999999976
Q ss_pred cC
Q psy1680 89 AD 90 (227)
Q Consensus 89 ~~ 90 (227)
+-
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 54
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=6.4e-14 Score=110.07 Aligned_cols=77 Identities=26% Similarity=0.338 Sum_probs=71.2
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecCC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~~ 91 (227)
.++|||+|||+.+|+++|+++|+.| .|.+|.|+.++. .+|||||+|.+.++|+.||.|+| ..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG-~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSG-ATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcC-CeeCCceEEEEeccC
Confidence 5799999999999999999999999 999999998853 46899999999999999999999 999999999999875
Q ss_pred CC
Q psy1680 92 KR 93 (227)
Q Consensus 92 ~~ 93 (227)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 60
>KOG0113|consensus
Probab=99.52 E-value=3.6e-14 Score=111.51 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=68.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.|=.||||.-| +++++|+.|+..|+.||.|+.|+|++|..||+++|||||+|+..-+..+|.+..+|..|+||
T Consensus 99 DPy~TLFv~RL--nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 99 DPYKTLFVARL--NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred Cccceeeeeec--cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 45679999999 66668999999999999999999999999999999999999999999999999999999996
No 61
>KOG0113|consensus
Probab=99.51 E-value=1.4e-13 Score=108.15 Aligned_cols=84 Identities=29% Similarity=0.558 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..+-++|||+-|+.+++|..|+..|+.| +|..|.|++|+.||+++|||||+|..+.+...|-+ .+| ..|+|+.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG-~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG-IKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC-ceecCcEEEEE
Confidence 4667999999999999999999999999 99999999999999999999999999999999999 999 99999999998
Q ss_pred ecCCCCC
Q psy1680 88 IADGKRN 94 (227)
Q Consensus 88 ~~~~~~~ 94 (227)
+-..+..
T Consensus 177 vERgRTv 183 (335)
T KOG0113|consen 177 VERGRTV 183 (335)
T ss_pred ecccccc
Confidence 8765443
No 62
>KOG0121|consensus
Probab=99.51 E-value=2.3e-14 Score=99.21 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=66.8
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.||||+||++ -++|++|+++|+++|.|..|.+-.|+.+..+-|||||+|-+.++|..||.-++|..|+.|
T Consensus 35 ~S~tvyVgNlSf--yttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSF--YTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred hcceEEEeeeee--eecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc
Confidence 578999999954 448999999999999999999999999999999999999999999999999999999875
No 63
>KOG4207|consensus
Probab=99.51 E-value=1.5e-14 Score=108.17 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=66.4
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+|.|-|| ...++.++|+.+|++||.|-+|.|++|+.|..++|||||.|....||+.|+++|+|.+||||
T Consensus 14 ~SLkVdNL--TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 14 TSLKVDNL--TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred eeEEecce--eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 46889999 66678999999999999999999999999999999999999999999999999999999997
No 64
>KOG0125|consensus
Probab=99.50 E-value=5.3e-14 Score=111.86 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=63.6
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..++|+|.|+|+... +-||+.+|++||.|.+|.|+.+ + ..|||||||+|++++||++|.++|+|.+|.||
T Consensus 95 ~pkRLhVSNIPFrFR--dpDL~aMF~kfG~VldVEIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFR--DPDLRAMFEKFGKVLDVEIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCceeEeecCCcccc--CccHHHHHHhhCceeeEEEEec-c-CCCCccceEEecChhhHHHHHHHhhcceeece
Confidence 346899999988775 5889999999999999999887 3 56899999999999999999999999999998
No 65
>KOG0107|consensus
Probab=99.50 E-value=6.1e-14 Score=102.30 Aligned_cols=77 Identities=30% Similarity=0.525 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
-.++|||+||+..+++.||+..|..| ++..|||-+. +.|||||+|.+..+|+.|+. |+| ..|.|..|.|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG-~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDG-KDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCC-ccccCceEEEEee
Confidence 47899999999999999999999999 9999999754 37999999999999999999 999 9999999999998
Q ss_pred CCCCC
Q psy1680 90 DGKRN 94 (227)
Q Consensus 90 ~~~~~ 94 (227)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86654
No 66
>KOG4207|consensus
Probab=99.50 E-value=9.4e-14 Score=103.89 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=78.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+...+.-..|-|.||.+-++.++|+.+|++| .|-+|.|++|+.|+.++|||||.|....+|+.||+ ++| ..|+|+.|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG-~~ldgRel 85 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG-AVLDGREL 85 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcc-eeecccee
Confidence 4455667899999999999999999999999 99999999999999999999999999999999999 999 99999999
Q ss_pred EEEecCC
Q psy1680 85 RLDIADG 91 (227)
Q Consensus 85 ~v~~~~~ 91 (227)
.|+.+.-
T Consensus 86 rVq~ary 92 (256)
T KOG4207|consen 86 RVQMARY 92 (256)
T ss_pred eehhhhc
Confidence 9998763
No 67
>KOG1190|consensus
Probab=99.49 E-value=1.5e-12 Score=106.48 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=127.3
Q ss_pred CceEEEcCCCC-CCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 13 PYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 13 ~~~l~V~nLp~-~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
+..|.|.||.. .+|.+.|..+|.-| .|.+|+|+..+ +--|+|++++...|+.||+ |+| ..|.|++|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g-~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEG-HKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhc-ceecCceEEEeec
Confidence 57888999865 59999999999999 99999999764 3579999999999999999 999 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
+..............+-....+...-.++.. .+..+.....+|+.+|.+.|+|+.+
T Consensus 371 KH~~vqlp~egq~d~glT~dy~~spLhrfkk----------------------pgsKN~~ni~PpsatlHlsnip~sv-- 426 (492)
T KOG1190|consen 371 KHTNVQLPREGQEDQGLTKDYGNSPLHRFKK----------------------PGSKNYQNIFPPSATLHLSNIPPSV-- 426 (492)
T ss_pred cCccccCCCCCCccccccccCCCCchhhccC----------------------cccccccccCCchhheeeccCCccc--
Confidence 8765432211000000000000000001100 0111222234788899999998777
Q ss_pred ChhhHHhhhccccce-EEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 170 SMNDHGLMVTEVTTL-VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i-~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
+||+++.+|..-|.. ...+... +.+.+|.+.++++|+|..|+-.++++.+++
T Consensus 427 see~lk~~f~~~g~~vkafkff~-----kd~kmal~q~~sveeA~~ali~~hnh~lge 479 (492)
T KOG1190|consen 427 SEEDLKNLFQEPGGQVKAFKFFQ-----KDRKMALPQLESVEEAIQALIDLHNHYLGE 479 (492)
T ss_pred chhHHHHhhhcCCceEEeeeecC-----CCcceeecccCChhHhhhhccccccccCCC
Confidence 789999999988844 4444322 235699999999999999999998887764
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=6.9e-14 Score=109.91 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=60.5
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++|||+|||+.. ++++|+++|+.||.|++|.|++|.. ++|||||+|.+.++|..||. |+|..|.||
T Consensus 4 ~rtVfVgNLs~~t--TE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 4 VRTVKVSNVSLKA--TERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 4689999997655 8999999999999999999999864 57999999999999999995 999999986
No 69
>KOG4212|consensus
Probab=99.48 E-value=3.6e-12 Score=105.13 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC
Q psy1680 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD 80 (227)
Q Consensus 3 r~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~ 80 (227)
|+..-...+...++||.||.+.+..+.|++.|.-. .+..+.+..|+. +.++|+|.++|..+-.|-.||. +++ .-+.
T Consensus 205 r~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~-~g~~ 282 (608)
T KOG4212|consen 205 RSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR-QGLF 282 (608)
T ss_pred hhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc-CCCc
Confidence 33333355667899999999999999999999888 888888888877 6889999999999999999998 887 6666
Q ss_pred CeEeEEEe
Q psy1680 81 GLQVRLDI 88 (227)
Q Consensus 81 g~~l~v~~ 88 (227)
+++..++.
T Consensus 283 ~~~~~~Rl 290 (608)
T KOG4212|consen 283 DRRMTVRL 290 (608)
T ss_pred cccceeec
Confidence 67666655
No 70
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=5.2e-13 Score=103.42 Aligned_cols=79 Identities=28% Similarity=0.339 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
...++|||+||++.+|+++|+++|+.| .|.+|.|+++. ..+++|||+|.+.++++.||.|+| ..|.+++|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnG-a~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSG-ATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCC-CeeCCceEEEEeC
Confidence 346899999999999999999999999 99999999884 445799999999999999999999 9999999999987
Q ss_pred CCCC
Q psy1680 90 DGKR 93 (227)
Q Consensus 90 ~~~~ 93 (227)
....
T Consensus 79 ~~y~ 82 (243)
T PLN03121 79 GQYE 82 (243)
T ss_pred cccc
Confidence 6543
No 71
>KOG4211|consensus
Probab=99.45 E-value=3.5e-12 Score=106.59 Aligned_cols=204 Identities=19% Similarity=0.226 Sum_probs=119.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEE-EEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
.....|-+++||+.+|++||.+||+.. -+.. +.++.++ .+++.|-|||+|.+.+.|++||..|. ..|+.+-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhr-e~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHR-ENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHH-HhhccceEEeeh
Confidence 466889999999999999999999998 3333 4455554 47799999999999999999999887 888888899877
Q ss_pred cCCCCCCC-----------CCCCCCCCCCCC-------CCCCCCCCC----------CCCCCCCCC--CCCCCCCCCCCC
Q psy1680 89 ADGKRNDN-----------KGGFNNKQNRGG-------GSGGMGGNK----------YNQHQGGSF--NRDNMRNNSRGG 138 (227)
Q Consensus 89 ~~~~~~~~-----------~~~~~~~~~~~~-------~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~ 138 (227)
+......+ .+.+......++ ...+..... +....+... ....-.......
T Consensus 179 Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~ 258 (510)
T KOG4211|consen 179 SSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPN 258 (510)
T ss_pred hHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccc
Confidence 65321110 000000000000 000000000 000000000 000000000000
Q ss_pred -----CCCCCCCCCCCCCCCCC-CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHH
Q psy1680 139 -----GASSGGGFNDFSRGGEG-PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENL 212 (227)
Q Consensus 139 -----~~~~~~~~~~~~~~~~~-~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a 212 (227)
...............+. ..+..+.|| ...++.++..+|++.-.+ .|.|-..++ |+.+|-|.|+|.+.++|
T Consensus 259 ~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlp--y~a~~~di~nfFspl~p~-~v~i~ig~d-Gr~TGEAdveF~t~eda 334 (510)
T KOG4211|consen 259 YPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLP--YDATENDIANFFSPLNPY-RVHIEIGPD-GRATGEADVEFATGEDA 334 (510)
T ss_pred cCCCCCcccCCCcccccCCCCCCceeeecCCC--ccCCCcchhhhcCCCCce-eEEEEeCCC-CccCCcceeecccchhh
Confidence 00001111111111222 455666675 455789999999987655 577766644 99999999999999999
Q ss_pred HHHHHHcC
Q psy1680 213 RQALLKDG 220 (227)
Q Consensus 213 ~~Al~~l~ 220 (227)
.+||.+-.
T Consensus 335 v~Amskd~ 342 (510)
T KOG4211|consen 335 VGAMGKDG 342 (510)
T ss_pred HhhhccCC
Confidence 99987643
No 72
>KOG0114|consensus
Probab=99.44 E-value=7.8e-13 Score=88.34 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=74.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
...+....+.|||+|||+.+|.++..++|.+| .|..|+|-..+ ..+|.|||.|++..+|.+||. |+| .-+.++.
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg-~n~~~ry 86 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSG-YNVDNRY 86 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcc-cccCCce
Confidence 33566778999999999999999999999999 99999996554 448999999999999999999 999 9999999
Q ss_pred eEEEecCCCC
Q psy1680 84 VRLDIADGKR 93 (227)
Q Consensus 84 l~v~~~~~~~ 93 (227)
+.|.+..+..
T Consensus 87 l~vlyyq~~~ 96 (124)
T KOG0114|consen 87 LVVLYYQPED 96 (124)
T ss_pred EEEEecCHHH
Confidence 9999987644
No 73
>smart00361 RRM_1 RNA recognition motif.
Probab=99.44 E-value=2.9e-13 Score=87.05 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=50.4
Q ss_pred hhhHHhhhc----cccceEEEE-EeecCCC--CcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 171 MNDHGLMVT----EVTTLVSVR-LVKDKET--DRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 171 ~~~l~~~f~----~~g~i~~v~-i~~d~~t--~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++|+++|+ +||.|.+|. |..++.+ +.++|+|||+|.+.++|.+|++.|||..++||
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 356666666 999999995 7777777 89999999999999999999999999999986
No 74
>KOG0114|consensus
Probab=99.43 E-value=3.5e-13 Score=90.00 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=60.9
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...|||.|||+.. |.|++.++|++||.|..|+|-..+.| +|.|||.|++..+|++|++.|+|.-+++|
T Consensus 18 nriLyirNLp~~I--TseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 18 NRILYIRNLPFKI--TSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred heeEEEecCCccc--cHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 4679999997665 78999999999999999999776554 89999999999999999999999998875
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=4.9e-13 Score=111.74 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCH--HHHHHHHH-hCCCceeCCeEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDV--ENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~--~~a~~al~-~~~~~~~~g~~l 84 (227)
......+||||||++.+++++|+..|++| .|..|.|+ +.+| +|||||+|.+. .++.+||. ||| ..+.|+.|
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNG-AEWKGR~L 80 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNG-CVWKGGRL 80 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcC-CeecCcee
Confidence 34566899999999999999999999999 99999999 4556 89999999987 78999999 999 99999999
Q ss_pred EEEecCC
Q psy1680 85 RLDIADG 91 (227)
Q Consensus 85 ~v~~~~~ 91 (227)
+|..+++
T Consensus 81 KVNKAKP 87 (759)
T PLN03213 81 RLEKAKE 87 (759)
T ss_pred EEeeccH
Confidence 9999986
No 76
>KOG0126|consensus
Probab=99.43 E-value=1.8e-14 Score=105.65 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+.-|||++||+.+ ||.||-..|+.||.|.+|.|++|..||+|+||||+.|++.-...-|+.-|||..|.||
T Consensus 33 kdsA~Iyiggl~~~L--tEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYEL--TEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred ccceEEEECCCcccc--cCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 345579999997666 7899999999999999999999999999999999999999999999999999999987
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.42 E-value=7e-13 Score=84.78 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=60.9
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+|+|.|||... +.++|+++|++||.|..+.+..++ +.++|+|||+|.+.++|.+|++.++|..++|+
T Consensus 1 ~v~i~~l~~~~--~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDV--TEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred CEEEcCCCCcC--CHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 48999997655 689999999999999999999886 78899999999999999999999999998874
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=5.6e-13 Score=103.22 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=59.6
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.+|||+||++.. ++++|+++|+.||.|.+|+|++|. ..+++|||+|.++++|..|+ .|+|.+|.|+
T Consensus 4 ~g~TV~V~NLS~~t--TE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~ 71 (243)
T PLN03121 4 GGYTAEVTNLSPKA--TEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQ 71 (243)
T ss_pred CceEEEEecCCCCC--CHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCc
Confidence 35689999996555 899999999999999999999994 45689999999999999999 7888888764
No 79
>KOG0107|consensus
Probab=99.41 E-value=4.6e-13 Score=97.75 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=59.9
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+|||+||+..+ ++.||..+|..||.|.+|-|.+.+ .|||||+|+++-||..|+..|+|..|.|.
T Consensus 10 ~~kVYVGnL~~~a--~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~ 75 (195)
T KOG0107|consen 10 NTKVYVGNLGSRA--TKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGS 75 (195)
T ss_pred CceEEeccCCCCc--chHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCc
Confidence 5689999997766 789999999999999999888765 69999999999999999999999999873
No 80
>KOG0125|consensus
Probab=99.41 E-value=6.8e-13 Score=105.65 Aligned_cols=81 Identities=21% Similarity=0.396 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
....++|+|.|||+...+-||+.+|.+| .|.+|.|+... .-+|||+||+|.+.++|++|-+ ||| ..+.||+|+|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHg-t~VEGRkIEVn 169 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHG-TVVEGRKIEVN 169 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhc-ceeeceEEEEe
Confidence 4556999999999999999999999999 99999998752 4569999999999999999998 999 99999999999
Q ss_pred ecCCCC
Q psy1680 88 IADGKR 93 (227)
Q Consensus 88 ~~~~~~ 93 (227)
.++.+-
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 998653
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.7e-12 Score=82.95 Aligned_cols=70 Identities=36% Similarity=0.659 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
+|||+|||..+++++|+++|.+| .+..+.+..++ +.++++|||+|.+.++|..|+. +++ ..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~-~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNG-TKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCC-cEECCEEEeeC
Confidence 58999999999999999999999 99999998776 6778999999999999999999 999 99999998873
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.1e-12 Score=83.50 Aligned_cols=66 Identities=32% Similarity=0.450 Sum_probs=59.5
Q ss_pred eccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 160 RNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 160 v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|+|||... ++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|++.+++..++|+
T Consensus 1 i~~l~~~~--~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~ 66 (71)
T smart00360 1 VGNLPPDV--TEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR 66 (71)
T ss_pred CCCCCccc--CHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc
Confidence 46775444 7899999999999999999999988899999999999999999999999999998875
No 83
>KOG0108|consensus
Probab=99.40 E-value=9.6e-13 Score=111.43 Aligned_cols=80 Identities=33% Similarity=0.574 Sum_probs=77.3
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
+.|||||||+++++++|..+|++. .|..++++.|+.||+.+||||++|.+.+++..|++ ||| .++.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg-~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNG-AEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCC-cccCCceEEeecccc
Confidence 899999999999999999999999 99999999999999999999999999999999999 999 999999999999876
Q ss_pred CCC
Q psy1680 92 KRN 94 (227)
Q Consensus 92 ~~~ 94 (227)
.+.
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 654
No 84
>KOG0129|consensus
Probab=99.37 E-value=1.1e-11 Score=104.20 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=114.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecC---CCCCeec---EEEEEeCCHHHHHHHHH-hCCCceeCCe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDK---ETDRFKG---FCYVEFVDVENLRQALL-KDGRITVDGL 82 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~---~~~~~~g---~afv~f~~~~~a~~al~-~~~~~~~~g~ 82 (227)
..-+++||||+||+.++|+.|...|..|.-..|.+.... .--.++| |+|+.|.++.++...|. +. . +..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~--~--~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS--E--GEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh--h--ccc
Confidence 445699999999999999999999999944556665321 1124456 99999999999988886 32 1 222
Q ss_pred EeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecc
Q psy1680 83 QVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNN 162 (227)
Q Consensus 83 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 162 (227)
.+.++.+.+.-.... .+-.+|.-.....-..++. .-.+.+||||+.
T Consensus 332 ~~yf~vss~~~k~k~-----------------------VQIrPW~laDs~fv~d~sq-----------~lDprrTVFVGg 377 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKE-----------------------VQIRPWVLADSDFVLDHNQ-----------PIDPRRTVFVGG 377 (520)
T ss_pred ceEEEEecCcccccc-----------------------eeEEeeEeccchhhhccCc-----------ccCccceEEecC
Confidence 333333222211100 0000000000000000000 014678999999
Q ss_pred CCCCCCCChhhHHhhhc-cccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHH
Q psy1680 163 NGPNRSNSMNDHGLMVT-EVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 218 (227)
Q Consensus 163 l~~~~~~~~~~l~~~f~-~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~ 218 (227)
||-++ +.++|..+|+ -||.|..+-|-.|++-+.++|-|-|+|.+...-.+||.+
T Consensus 378 vprpl--~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 378 LPRPL--TAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcc--hHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 98777 6788999999 799999999999998899999999999999999999874
No 85
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=3e-12 Score=81.48 Aligned_cols=69 Identities=41% Similarity=0.711 Sum_probs=64.5
Q ss_pred EcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 18 VGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 18 V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
|+|||..+++++|+++|++| .+..+.+..++.++.++++|||+|.+.++|..|+. +++ ..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~-~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG-KELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC-CeeCCcEEEeC
Confidence 67999999999999999999 99999999888788999999999999999999999 999 99999998873
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=1.6e-12 Score=108.78 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=60.9
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCH--HHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDV--ENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~--~~a~~Al~~l~g~~i~gr 227 (227)
..-+|||+||++.+ +++||...|+.||.|.+|.|+ ++|| ||||||+|.+. +++.+|+..|||..+.||
T Consensus 9 ~gMRIYVGNLSydV--TEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 9 GGVRLHVGGLGESV--GRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred cceEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 44679999996555 899999999999999999999 4567 99999999987 689999999999999997
No 87
>KOG0130|consensus
Probab=99.36 E-value=2.5e-12 Score=89.99 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=80.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
.|+..-....|||.++...+||++|.+.|..| +|..+.+-.|+-||-.+|||+|+|.+...|+.||. +|+ ..|.|..
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng-~~ll~q~ 143 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG-AELLGQN 143 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc-hhhhCCc
Confidence 34445667999999999999999999999999 99999999999999999999999999999999999 999 9999999
Q ss_pred eEEEecCCCC
Q psy1680 84 VRLDIADGKR 93 (227)
Q Consensus 84 l~v~~~~~~~ 93 (227)
|.|.|+.-+.
T Consensus 144 v~VDw~Fv~g 153 (170)
T KOG0130|consen 144 VSVDWCFVKG 153 (170)
T ss_pred eeEEEEEecC
Confidence 9999986543
No 88
>KOG0111|consensus
Probab=99.36 E-value=1.2e-12 Score=99.00 Aligned_cols=86 Identities=21% Similarity=0.375 Sum_probs=80.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
+....++|||++|...++|.-|...|-+| .|.+|.|+.|..+++.+||+||+|.-.++|..||. +|. .+|.|+.|+|
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne-sEL~GrtirV 84 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE-SELFGRTIRV 84 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch-hhhcceeEEE
Confidence 45567899999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecCCCCCC
Q psy1680 87 DIADGKRND 95 (227)
Q Consensus 87 ~~~~~~~~~ 95 (227)
.++.|.+..
T Consensus 85 N~AkP~kik 93 (298)
T KOG0111|consen 85 NLAKPEKIK 93 (298)
T ss_pred eecCCcccc
Confidence 999987643
No 89
>KOG0130|consensus
Probab=99.33 E-value=1.6e-12 Score=91.03 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=64.3
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
+=.|||.++.... ++++|.+.|..||.|++|.|..|+.||..+|||.|+|++.++|++|++++||..|-|
T Consensus 72 GwIi~VtgvHeEa--tEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 72 GWIIFVTGVHEEA--TEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred eEEEEEeccCcch--hHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 3468999996554 899999999999999999999999999999999999999999999999999988755
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.7e-11 Score=78.66 Aligned_cols=72 Identities=43% Similarity=0.741 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
+|+|+|||..+++++|+++|..+ .+..+.+..++.+ ..+++|||+|.+.++|..|+. +++ ..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~-~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNG-KELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEeC
Confidence 48999999999999999999999 9999999987654 678999999999999999999 999 889999998864
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=4.7e-12 Score=102.01 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=66.8
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+|||+|||..+ ++++|.++|..||.|..+.+..|+.++.++|||||+|.+.++|..|++.++|..|.||
T Consensus 115 ~~~l~v~nL~~~~--~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~ 185 (306)
T COG0724 115 NNTLFVGNLPYDV--TEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR 185 (306)
T ss_pred CceEEEeCCCCCC--CHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc
Confidence 5789999997555 8999999999999999999999998999999999999999999999999999999886
No 92
>KOG0120|consensus
Probab=99.31 E-value=6.6e-12 Score=107.13 Aligned_cols=176 Identities=21% Similarity=0.265 Sum_probs=129.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-C------------eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCC
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-K------------LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~------------i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~ 75 (227)
......+++|+++|..+++++.-.+|..- - +..+.+ +..+.|||++|.+.++|..++.+++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhcccc
Confidence 34556899999999999999988887542 2 333333 3347899999999999999999999
Q ss_pred CceeCCeEeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1680 76 RITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEG 155 (227)
Q Consensus 76 ~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (227)
..+.|.++++.............-... . .+.+ +. ...........
T Consensus 245 -~~f~g~~~~~~r~~d~~~~p~~~~~~~--~--------~~~~------------------~~------~~~~t~~~~~~ 289 (500)
T KOG0120|consen 245 -IIFEGRPLKIRRPHDYQPVPGITLSPS--Q--------LGKV------------------GL------LPASTDVPDSP 289 (500)
T ss_pred -hhhCCCCceecccccccCCccchhhhc--c--------cccc------------------CC------cccccCccccc
Confidence 999999988876554332111000000 0 0000 00 00000011245
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+||++||... +++++.++...||.+....++.|..+|.++||||.+|-++.....|+..|||..+.++
T Consensus 290 ~ki~v~~lp~~l--~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 290 NKIFVGGLPLYL--TEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred chhhhccCcCcc--CHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 679999997666 6899999999999999999999999999999999999999999999999999998763
No 93
>KOG1365|consensus
Probab=99.30 E-value=2.5e-12 Score=104.39 Aligned_cols=178 Identities=17% Similarity=0.091 Sum_probs=120.1
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-C----eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEE
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-K----LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~----i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~ 87 (227)
.-.|-+++||+++++.++.+||..- . ...|..+.. -.|+..|-|||.|..+++|+.||..|. ..++-|-|++.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khr-q~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHR-QNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHH-HHHhHHHHHHH
Confidence 3456678999999999999999743 3 345555543 458999999999999999999999777 67777777776
Q ss_pred ecCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceec
Q psy1680 88 IADGKRND------NKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRN 161 (227)
Q Consensus 88 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 161 (227)
.++..+.. ......+..+ ++... +..........+...|-++
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~----sp~~p----------------------------~~p~~~~p~~~~kdcvRLR 286 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLT----SPLLP----------------------------GGPARLVPPTRSKDCVRLR 286 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCC----CCCCC----------------------------CCccccCCCCCCCCeeEec
Confidence 65532210 0000000000 00000 0000001111235678889
Q ss_pred cCCCCCCCChhhHHhhhcccc-ceEE--EEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 162 NNGPNRSNSMNDHGLMVTEVT-TLVS--VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 162 nl~~~~~~~~~~l~~~f~~~g-~i~~--v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.||+.+ +.+||.++|..|. .|.. |.++.+ ..|++.|-|||+|.+.|+|.+|..+.+...+.+|
T Consensus 287 GLPy~A--tvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~R 352 (508)
T KOG1365|consen 287 GLPYEA--TVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSR 352 (508)
T ss_pred CCChhh--hHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 996555 7899999999987 4444 777777 4599999999999999999999998877665443
No 94
>KOG1456|consensus
Probab=99.29 E-value=4.1e-11 Score=97.15 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=122.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH---hCCCceeCCeEeE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL---KDGRITVDGLQVR 85 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~---~~~~~~~~g~~l~ 85 (227)
..++-.|.|++|-..++|.+|.+-++.| .|..+..+.. +..|.|+|.+.+.|+.++. -+. ..+.|+.--
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~-i~i~gq~Al 100 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQ-IYIAGQQAL 100 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCc-ccccCchhh
Confidence 4667889999999999999999999999 9999888754 5589999999999999997 344 667777777
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCC
Q psy1680 86 LDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGP 165 (227)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 165 (227)
+.+++.+.-.+.+ .....+...|.+.-|.+
T Consensus 101 ~NyStsq~i~R~g--------------------------------------------------~es~~pN~VLl~TIlNp 130 (494)
T KOG1456|consen 101 FNYSTSQCIERPG--------------------------------------------------DESATPNKVLLFTILNP 130 (494)
T ss_pred cccchhhhhccCC--------------------------------------------------CCCCCCCeEEEEEeecC
Confidence 7777654433221 00012455677777776
Q ss_pred CCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 166 NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 166 ~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
.+..|.|-|..+|.+.|.|..|.|++.. | -.|.|||++.+.|++|.++|||..|
T Consensus 131 ~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 131 QYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred ccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHHHHHHHhhcccccc
Confidence 7777889999999999999999998862 2 3699999999999999999999876
No 95
>KOG0108|consensus
Probab=99.29 E-value=4.5e-12 Score=107.38 Aligned_cols=70 Identities=29% Similarity=0.334 Sum_probs=66.9
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+||+|+|+.. ++++|..+|+..|.|.+++++.|++||+++||||++|.+.++|..|++.|||.++.||
T Consensus 19 ~~v~vgnip~~~--se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr 88 (435)
T KOG0108|consen 19 SSVFVGNIPYEG--SEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR 88 (435)
T ss_pred cceEecCCCCcc--cHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc
Confidence 689999996655 8999999999999999999999999999999999999999999999999999999997
No 96
>KOG0131|consensus
Probab=99.29 E-value=1.9e-12 Score=95.15 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...||||+||+..+ +++.|+++|-..|.|.++++++|+.|+...|||||+|.+.|+|+.|++-||...|-||
T Consensus 8 qd~tiyvgnld~kv--s~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 8 QDATLYVGNLDEKV--SEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred CCceEEEecCCHHH--HHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 45689999996544 7888999999999999999999999999999999999999999999999998887765
No 97
>KOG0145|consensus
Probab=99.28 E-value=2.9e-11 Score=93.68 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
.....|||-||.++++|.-|-++|.+| .|..|+|++|..|+++|||+||.+.+-++|.+||. ||| ..+.++.|.|.+
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNG-y~lg~rvLQVsF 354 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG-YRLGDRVLQVSF 354 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcC-ccccceEEEEEE
Confidence 446899999999999999999999999 99999999999999999999999999999999999 999 999999999988
Q ss_pred cCCC
Q psy1680 89 ADGK 92 (227)
Q Consensus 89 ~~~~ 92 (227)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 6654
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.27 E-value=2.2e-11 Score=78.19 Aligned_cols=68 Identities=32% Similarity=0.440 Sum_probs=61.2
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+|+|.+||... ++++|+++|+.+|.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..++|+
T Consensus 1 ~i~i~~l~~~~--~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDV--TEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCcc--CHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 47999997665 78999999999999999999998764 7789999999999999999999999988875
No 99
>KOG0111|consensus
Probab=99.27 E-value=1.4e-12 Score=98.51 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..++|||+.|...+ ++.-|...|=+||.|.+|.++.|.++++++|||||+|+..|||.+|+.-||+.+|-||
T Consensus 9 ~KrtlYVGGladeV--tekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr 80 (298)
T KOG0111|consen 9 QKRTLYVGGLADEV--TEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR 80 (298)
T ss_pred cceeEEeccchHHH--HHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence 45799999996655 6788999999999999999999999999999999999999999999999999999886
No 100
>KOG1190|consensus
Probab=99.23 E-value=3.5e-10 Score=92.82 Aligned_cols=202 Identities=13% Similarity=0.104 Sum_probs=121.1
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC-eEeEEEecC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG-LQVRLDIAD 90 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g-~~l~v~~~~ 90 (227)
-+++|+++-+.++-+-|..+|++| .|..|.-... ...-.|+|+|.+.+.|+.|-. |+|....+| +.|+|.++.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 567899999999999999999999 8887654322 123379999999999999998 999334455 367777765
Q ss_pred CCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC--CCcceecc
Q psy1680 91 GKRNDNKGGFNNKQNRGGG----SGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGG--GFNDFSRGGE--GPGGFRNN 162 (227)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~l~v~n 162 (227)
-..-... +.+++++.=+ +.+...+..+..-...+.....-........+... ...+..-..+ ..+|.|.|
T Consensus 227 lt~LnvK--ynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 227 LTDLNVK--YNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred cccceee--ccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 3221110 1111111000 00000000000000000000000000000000000 0000111122 46788999
Q ss_pred CCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 163 NGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 163 l~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|.... .|.|-|.-+|+-||.|..|+|+.++. --|.|.+.+..+|.-|++.|+|..|-|+
T Consensus 305 ln~~~-VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk 363 (492)
T KOG1190|consen 305 LNEEA-VTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGK 363 (492)
T ss_pred Cchhc-cchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCc
Confidence 96443 37899999999999999999998853 5699999999999999999999998774
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=2.9e-11 Score=74.18 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=44.2
Q ss_pred HHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 174 HGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 174 l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|+++|++||.|..+.+.++. +++|||+|.+.++|..|++.|||..++|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 67899999999999997774 58999999999999999999999999885
No 102
>KOG4208|consensus
Probab=99.20 E-value=4.1e-11 Score=89.95 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=64.2
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccc-cceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEV-TTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~-g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
......+++..+|.-. -+.++..+|.+| |.|+.+++-|++.||+|+|||||+|++.+.|+=|-+.||++.|.|+
T Consensus 46 ~~~~g~~~~~~~p~g~--~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGF--FETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred cCCccceeecccccch--hHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 3455678999996544 467788889988 6888999999999999999999999999999999999999998774
No 103
>KOG0109|consensus
Probab=99.17 E-value=8.1e-11 Score=92.56 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
.+.+.+|+|+||.+.++..+|+..|.+| ++++++|++ +|+||.|.-.++|..|++ |++ .+|.|++++|+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~-~~~~gk~m~vq 145 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDN-TEFQGKRMHVQ 145 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccc-cccccceeeee
Confidence 4578999999999999999999999999 999999984 599999999999999999 999 99999999999
Q ss_pred ecCCCCCCC
Q psy1680 88 IADGKRNDN 96 (227)
Q Consensus 88 ~~~~~~~~~ 96 (227)
+++.+-...
T Consensus 146 ~stsrlrta 154 (346)
T KOG0109|consen 146 LSTSRLRTA 154 (346)
T ss_pred eeccccccC
Confidence 998765543
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.4e-10 Score=74.56 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=52.4
Q ss_pred HHHHHhccc----CC-CeEEEE-EeecCCC--CCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 27 QGDVERFFP----EQ-KLVSVR-LVKDKET--DRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 27 ~~~l~~~f~----~~-~i~~v~-i~~~~~~--~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
+++|+++|+ .| .|..+. |+.++.+ +.++|||||.|.+.++|.+|+. ||| ..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g-~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNG-RYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCC-CEECCEEEEe
Confidence 567888888 99 999985 7777666 8899999999999999999999 999 9999999876
No 105
>KOG0415|consensus
Probab=99.15 E-value=5.8e-11 Score=95.70 Aligned_cols=83 Identities=25% Similarity=0.439 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
..+|.+.|||-.|.+-+|.++|.-+|+.| .|..|.|++|..||.+..||||+|.+.+++++|.- +++ ..|++++|+|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN-vLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN-VLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc-eeeccceEEe
Confidence 35788999999999999999999999999 99999999999999999999999999999999998 999 9999999999
Q ss_pred EecCCC
Q psy1680 87 DIADGK 92 (227)
Q Consensus 87 ~~~~~~ 92 (227)
.++..-
T Consensus 314 DFSQSV 319 (479)
T KOG0415|consen 314 DFSQSV 319 (479)
T ss_pred ehhhhh
Confidence 998653
No 106
>KOG1456|consensus
Probab=99.14 E-value=5.4e-09 Score=85.07 Aligned_cols=186 Identities=17% Similarity=0.141 Sum_probs=130.3
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
...+.+.+.|-+|... +.-+.|.++|=.| .|..|+.++.+ .|.|.|++.+...+++|+. ||+ ..+-|.+|.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn-~~lfG~kl~ 356 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNN-IPLFGGKLN 356 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhcc-CccccceEE
Confidence 4567789999999865 6667899999999 99999999764 4799999999999999999 999 999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccC
Q psy1680 86 LDIADGKRNDNKGGFNNKQNRGGG--SGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNN 163 (227)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 163 (227)
|..++..-......+.-..+...- -.++..++|.+....+ -....+|+++|.-.|.
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAs----------------------KNrIq~Ps~vLHffNa 414 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQAS----------------------KNRIQPPSNVLHFFNA 414 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhh----------------------cccccCCcceeEEecC
Confidence 999865433221111110000000 0011111121111111 1112367899999999
Q ss_pred CCCCCCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 164 GPNRSNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 164 ~~~~~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
|..+ ||+.|..+|..-+ .-.+++|..-+ +-+ .--+.+||++.++|..||.++|-..|++
T Consensus 415 P~~v--tEe~l~~i~nek~v~~~svkvFp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 415 PLGV--TEEQLIGICNEKDVPPTSVKVFPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred CCcc--CHHHHHHHhhhcCCCcceEEeeccc-ccc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 7666 7999999999876 34567777664 233 3468999999999999999999988865
No 107
>KOG0415|consensus
Probab=99.11 E-value=1.1e-10 Score=94.17 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=70.3
Q ss_pred CCCCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 148 DFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 148 ~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.....||.++|||-.|. ..++.+||.-+|+.||.|.+|.+++|..||.+--||||+|++.+++++|.-+|++..|++|
T Consensus 232 dAd~~PPeNVLFVCKLN--PVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLN--PVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred ccccCCCcceEEEEecC--CcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 33345788999999995 3447799999999999999999999999999999999999999999999999999999876
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=6.1e-10 Score=68.21 Aligned_cols=54 Identities=26% Similarity=0.593 Sum_probs=48.5
Q ss_pred HHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 30 VERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 30 l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
|+++|++| +|..+.+.... +++|||+|.+.++|..|++ +|+ ..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~-~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNG-RQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTT-SEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEC
Confidence 67899999 99999997653 5899999999999999999 999 9999999999985
No 109
>KOG0146|consensus
Probab=99.08 E-value=1.4e-10 Score=90.37 Aligned_cols=88 Identities=17% Similarity=0.328 Sum_probs=82.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.+.++.|+|||-.||.+..+.+|-++|-.| .|+..++..|+.|+.+|=|+||.|.+..+++.||. +|| +.|+=++|+
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNG-FQIGMKRLK 358 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNG-FQIGMKRLK 358 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcc-hhhhhhhhh
Confidence 356788999999999999999999999999 99999999999999999999999999999999999 999 999999999
Q ss_pred EEecCCCCCCC
Q psy1680 86 LDIADGKRNDN 96 (227)
Q Consensus 86 v~~~~~~~~~~ 96 (227)
|.+.++|...+
T Consensus 359 VQLKRPkdanR 369 (371)
T KOG0146|consen 359 VQLKRPKDANR 369 (371)
T ss_pred hhhcCccccCC
Confidence 99998877543
No 110
>KOG0226|consensus
Probab=99.05 E-value=5e-10 Score=86.63 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=110.2
Q ss_pred CceEEEcCCCCCCCHHH-H--HhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 13 PYTAFVGNLPNGITQGD-V--ERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~-l--~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
-...+++++-..+..+- | ...|+.| ......++++.. +...+++|+.|.....-.++-. -++ +.+.-..+++.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~-Kki~~~~VR~a 173 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEK-KKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhcccccc-ccccCcceeec
Confidence 35556666655544443 3 5678888 777777777754 5668899999987665555544 444 44443332221
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
..+ . |....-..| ......||.+.|+..+
T Consensus 174 ~gt--s------------------------wedPsl~ew-------------------------~~~DfRIfcgdlgNev 202 (290)
T KOG0226|consen 174 AGT--S------------------------WEDPSLAEW-------------------------DEDDFRIFCGDLGNEV 202 (290)
T ss_pred ccc--c------------------------cCCcccccC-------------------------ccccceeecccccccc
Confidence 111 1 000000000 1234478999997666
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.+-|...|.+|-.....++++|..||+++||+||.|.++.|+.+|+..|+|.-++.|
T Consensus 203 --nd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 203 --NDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred --cHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 5677899999999999999999999999999999999999999999999999988764
No 111
>KOG0105|consensus
Probab=99.04 E-value=2.9e-10 Score=84.01 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=58.3
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.+.+|||+|||.+. -+.+|.++|.+||.|..|.|...+ ....||||+|+++-||+.|+..-+|+.++|
T Consensus 5 ~~~~iyvGNLP~di--RekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg 72 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDI--REKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDG 72 (241)
T ss_pred ccceEEecCCCcch--hhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCc
Confidence 35689999998877 468899999999999999875442 345799999999999999999999999886
No 112
>KOG4210|consensus
Probab=99.03 E-value=4.3e-10 Score=91.18 Aligned_cols=168 Identities=24% Similarity=0.250 Sum_probs=124.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
....++|++++..++.+.++..++..+ ...............+++++.+.|...+.+..++.+.+...+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357899999999999999888888888 7777766665677888999999999999999999965513445554444333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
........ ... ......++...++|.+|+..+
T Consensus 166 ~~~~~~~~-n~~---------------------------------------------~~~~~~~s~~~~~~~~~~f~~-- 197 (285)
T KOG4210|consen 166 TRRGLRPK-NKL---------------------------------------------SRLSSGPSDTIFFVGELDFSL-- 197 (285)
T ss_pred cccccccc-chh---------------------------------------------cccccCccccceeeccccccc--
Confidence 32221000 000 000111223334499996555
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+..|..+|.|+.++++.++.++.++|||+|.|.....+..|+.. +...+.+|
T Consensus 198 ~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (285)
T KOG4210|consen 198 TRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGR 254 (285)
T ss_pred chHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCc
Confidence 7899999999999999999999999999999999999999999999987 77766654
No 113
>KOG4454|consensus
Probab=99.02 E-value=6.6e-11 Score=89.52 Aligned_cols=142 Identities=16% Similarity=0.222 Sum_probs=113.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
.+...+|||.||...++|+-|.++|-+. +|..|.|..++. ++.+ ||||.|.++-++.-|++ +|| ..+.+..+.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng-~~l~~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENG-DDLEEDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhccc-chhccchhhcc
Confidence 4567899999999999999999999999 999999988865 4445 99999999999999999 999 99988888777
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
+-..... . |.+.
T Consensus 83 ~r~G~sh-------------------------------------------------------------a-------pld~ 94 (267)
T KOG4454|consen 83 LRCGNSH-------------------------------------------------------------A-------PLDE 94 (267)
T ss_pred cccCCCc-------------------------------------------------------------c-------hhhh
Confidence 6432110 0 1123
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcc
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT 223 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~ 223 (227)
..+++.+...|+.-+.+..+++.++.+ |+++.++||.+-..-..-.++..-.+..
T Consensus 95 r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 95 RVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccC
Confidence 335677788888889999999999977 8899999999887777777776655543
No 114
>KOG4205|consensus
Probab=99.02 E-value=5.8e-10 Score=90.87 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=79.4
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~ 90 (227)
...+|||++||.++++++++++|.+| .|..+.++.|+.+.++++|+||.|.+++++.+++.+.- +.|+++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f-~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKF-HDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccce-eeecCceeeEeecc
Confidence 46799999999999999999999999 99999999999999999999999999999999999888 99999999999999
Q ss_pred CCCCCC
Q psy1680 91 GKRNDN 96 (227)
Q Consensus 91 ~~~~~~ 96 (227)
++....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 987644
No 115
>KOG0153|consensus
Probab=98.93 E-value=4.4e-09 Score=84.81 Aligned_cols=79 Identities=19% Similarity=0.399 Sum_probs=70.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH--hCCCceeCCeEe
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL--KDGRITVDGLQV 84 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~--~~~~~~~~g~~l 84 (227)
.+.....+|||++|...+++.+|+++|.+| +|..+.++.. +++|||+|.+.++|+.|.+ ++. ..++|++|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~-lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNK-LVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcce-eeecceEE
Confidence 345666999999999999999999999999 9999999765 5699999999999999998 776 99999999
Q ss_pred EEEecCCCC
Q psy1680 85 RLDIADGKR 93 (227)
Q Consensus 85 ~v~~~~~~~ 93 (227)
.|.|..+++
T Consensus 296 ~i~Wg~~~~ 304 (377)
T KOG0153|consen 296 KIKWGRPKQ 304 (377)
T ss_pred EEEeCCCcc
Confidence 999998843
No 116
>KOG0116|consensus
Probab=98.92 E-value=1.1e-08 Score=86.49 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
.....|||+|||.+++..+|+++|..| .|....|....-.++...||||+|.+..+++.||..+- ..+++++|.|+.-
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp-~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASP-LEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCc-cccCCeeEEEEec
Confidence 344569999999999999999999999 99988876543223434899999999999999999777 9999999999987
Q ss_pred CCCCC
Q psy1680 90 DGKRN 94 (227)
Q Consensus 90 ~~~~~ 94 (227)
.+...
T Consensus 365 ~~~~~ 369 (419)
T KOG0116|consen 365 RPGFR 369 (419)
T ss_pred ccccc
Confidence 66443
No 117
>KOG4208|consensus
Probab=98.92 E-value=6.1e-09 Score=78.39 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=75.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
......-+||+.+|.-+.+.++..+|.++ .+..+++.+.+.||.++|||||+|.+.+.|.-|-+ +|+ ..|.++.|.
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNN-YLl~e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNN-YLLMEHLLE 123 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhh-hhhhhheee
Confidence 44566788999999999999999999999 57777888999999999999999999999999999 999 999999999
Q ss_pred EEecCCC
Q psy1680 86 LDIADGK 92 (227)
Q Consensus 86 v~~~~~~ 92 (227)
+++-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987654
No 118
>KOG4307|consensus
Probab=98.81 E-value=1.1e-07 Score=83.20 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEE-EEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
.+......|||..||..+++.++-++|... .|++ |.|-+- -+++.++-|||.|...+.+..|.. .+. +.++.+.|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k-~y~G~r~i 506 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTK-FYPGHRII 506 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhheeccccccchhhhcccc-cccCceEE
Confidence 455677999999999999999999999988 7777 566554 346778999999999888888877 555 66667778
Q ss_pred EEEecC
Q psy1680 85 RLDIAD 90 (227)
Q Consensus 85 ~v~~~~ 90 (227)
+|+...
T Consensus 507 rv~si~ 512 (944)
T KOG4307|consen 507 RVDSIA 512 (944)
T ss_pred Eeechh
Confidence 876654
No 119
>KOG0128|consensus
Probab=98.80 E-value=3.1e-10 Score=100.61 Aligned_cols=136 Identities=19% Similarity=0.254 Sum_probs=113.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
...++||.||+..+.+.+|...|..+ .+..+.|......++.+|+|++.|-..+.+.+|+. ... ..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-CFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-hhhh---------
Confidence 34789999999999999999999999 77777776667788999999999999999999998 444 2222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
...++|.|+|+..
T Consensus 736 -----------------------------------------------------------------K~~v~i~g~pf~g-- 748 (881)
T KOG0128|consen 736 -----------------------------------------------------------------KISVAISGPPFQG-- 748 (881)
T ss_pred -----------------------------------------------------------------hhhhheeCCCCCC--
Confidence 0137899997665
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
|.+.++.+|+.+|.+++++++..+. |+++|.|+|.|.+..+|.+++....+..++
T Consensus 749 t~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 749 TKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred chHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhh
Confidence 7899999999999999999888755 999999999999999999998887766553
No 120
>KOG4307|consensus
Probab=98.78 E-value=5.1e-08 Score=85.12 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=122.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
....+.+-+.++++++.+.|+++||-...+..+.|..++..+...|-++|.|....++++|+.-+. ..+-.+.+.+..+
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~-~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNP-SDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCc-hhhhhcceeecCC
Confidence 355677778899999999999999976666666666666666668999999999999999999777 7777888888776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRD-NMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
........+.+........ .+.++.+. .+..... .++.+...-.+....|||..||...
T Consensus 387 g~~~~~~a~~~~~~~~~~~-------------~~~~hg~p~~~pr~~~------~~gq~vp~P~~ag~~lyv~~lP~~t- 446 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPV-------------IQNNHGRPIAPPRAMV------RPGQNVPFPGGAGGALYVFQLPVMT- 446 (944)
T ss_pred CccccccCccccccCCCCc-------------ccccCCCCCCCccccc------CCCCCCCCCCCccceEEeccCCccc-
Confidence 6544332222111110000 00000000 0000000 0011111222456789999996544
Q ss_pred CChhhHHhhhccccceEE-EEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 169 NSMNDHGLMVTEVTTLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~-v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
++.++.++|.....|++ |.|-+-+ +++-++-|||+|..++++..|+..-.
T Consensus 447 -~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~ 497 (944)
T KOG4307|consen 447 -PIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKT 497 (944)
T ss_pred -cccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhccc
Confidence 67788889988777776 6666664 48889999999999888777765443
No 121
>KOG1365|consensus
Probab=98.78 E-value=1.1e-07 Score=77.79 Aligned_cols=165 Identities=19% Similarity=0.126 Sum_probs=112.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCCCeEEE-EEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v-~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
.+.+..|-.++||+..++.+|-.+|....|... ..+.--..++..|.+.|.|.+.+.-+.|++.+. ..+.++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhk-hh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHK-HHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhh-hhccCCceeeec
Confidence 344556667899999999999999976633322 222223447778999999999999999999777 788889998887
Q ss_pred cCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCC
Q psy1680 89 ADGKRNDN--KGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPN 166 (227)
Q Consensus 89 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 166 (227)
+....--. ++++. .... +......-.|-++.||++
T Consensus 136 a~ge~f~~iagg~s~------------e~~~-------------------------------flsk~~qvivRmRGLPfd 172 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSN------------EAAP-------------------------------FLSKENQVIVRMRGLPFD 172 (508)
T ss_pred cCchhheEecCCccc------------cCCC-------------------------------CCCcccceEEEecCCCCC
Confidence 76433211 00000 0000 000011224567778665
Q ss_pred CCCChhhHHhhhccc----cceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCC
Q psy1680 167 RSNSMNDHGLMVTEV----TTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 221 (227)
Q Consensus 167 ~~~~~~~l~~~f~~~----g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g 221 (227)
+ ++.|+..+|.+- |..+.|-+++.++ |+.+|-|||.|..+++|+.||.++.+
T Consensus 173 a--t~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~khrq 228 (508)
T KOG1365|consen 173 A--TALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRKHRQ 228 (508)
T ss_pred c--chHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHHHHH
Confidence 5 789999999742 2455666666655 99999999999999999999987653
No 122
>KOG4206|consensus
Probab=98.77 E-value=1.9e-08 Score=76.88 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=56.6
Q ss_pred CCCcceeccCCCCCCCChhhHHh----hhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGL----MVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~----~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
+..||||.||.... ..++|+. +|+.||.|.+|...+. .+.+|.|||.|.+.+.|-.|+.+|+|+.+=|
T Consensus 8 pn~TlYInnLnekI--~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 8 PNGTLYINNLNEKI--KKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CCceEeehhccccc--cHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 34499999996544 3455555 9999999999987765 6789999999999999999999999998755
No 123
>KOG0132|consensus
Probab=98.76 E-value=1.7e-08 Score=89.07 Aligned_cols=74 Identities=24% Similarity=0.486 Sum_probs=68.6
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~ 90 (227)
+++||||+|+.++++.||.++|+.| +|..|.++-. +++|||.+-..++|.+||. |.. ..+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n-~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSN-VKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhc-ccccceeeEEeeec
Confidence 4899999999999999999999999 9999988744 7899999999999999998 999 99999999999987
Q ss_pred CCC
Q psy1680 91 GKR 93 (227)
Q Consensus 91 ~~~ 93 (227)
.+-
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 654
No 124
>KOG0533|consensus
Probab=98.75 E-value=3.3e-08 Score=77.68 Aligned_cols=84 Identities=24% Similarity=0.407 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
.+..+.+|+|.|||+.++++||+++|..| .+..+.+-.++. |++.|.|-|.|...++|.+||+ +++ +.++|++|++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~~mk~ 156 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNG-VALDGRPMKI 156 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcC-cccCCceeee
Confidence 34555889999999999999999999999 999999988855 8999999999999999999999 999 9999999999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
....+...
T Consensus 157 ~~i~~~~~ 164 (243)
T KOG0533|consen 157 EIISSPSQ 164 (243)
T ss_pred EEecCccc
Confidence 88766543
No 125
>KOG4209|consensus
Probab=98.67 E-value=2.9e-08 Score=78.11 Aligned_cols=72 Identities=24% Similarity=0.243 Sum_probs=64.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.....+||+|+.+.. +.+++...|+.||.|..+.|+.|+.++.++||+||+|.+.+.++.|+. |||..|.|+
T Consensus 99 ~d~~sv~v~nvd~~~--t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~ 170 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLV--TLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP 170 (231)
T ss_pred cCCceEEEecccccc--ccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence 455679999995544 566699999999999999999999999999999999999999999999 999998875
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.67 E-value=1.5e-07 Score=63.67 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=65.0
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC---CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC----CeEeE
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD----GLQVR 85 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~---~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~----g~~l~ 85 (227)
++|.|+|||...|.++|.+++... ...-+.++.|..++.+.|||||-|.+++.|.+..+ .+| ..+. .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g-~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG-KKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcC-CccccCCCCcEEE
Confidence 689999999999999999888754 56677899998889999999999999999999998 999 7775 44667
Q ss_pred EEecC
Q psy1680 86 LDIAD 90 (227)
Q Consensus 86 v~~~~ 90 (227)
|.+|+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 77765
No 127
>KOG4661|consensus
Probab=98.67 E-value=4.1e-08 Score=84.05 Aligned_cols=81 Identities=12% Similarity=0.259 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..-.++|||.+|...+.-.+|+.+|++| .|+..+++...-+.-.+=|+||++++.++|.+||+ |+. +.|.|+.|.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr-TELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR-TELHGRMISVE 480 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh-hhhcceeeeee
Confidence 3445899999999999999999999999 99999999876555556799999999999999999 999 99999999999
Q ss_pred ecCC
Q psy1680 88 IADG 91 (227)
Q Consensus 88 ~~~~ 91 (227)
.++.
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 8864
No 128
>KOG0533|consensus
Probab=98.66 E-value=5.1e-08 Score=76.65 Aligned_cols=70 Identities=20% Similarity=0.128 Sum_probs=63.7
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.+|+|.|||..+ +.+||+++|+.|+.++.+-|..|+. |.+.|.|=|.|...+||.+|++.+||..++|+
T Consensus 83 ~~~v~v~NL~~~V--~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~ 152 (243)
T KOG0533|consen 83 STKVNVSNLPYGV--IDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGR 152 (243)
T ss_pred cceeeeecCCcCc--chHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCc
Confidence 4679999996555 7899999999999999999999955 99999999999999999999999999999985
No 129
>KOG2193|consensus
Probab=98.65 E-value=3.4e-09 Score=87.50 Aligned_cols=140 Identities=20% Similarity=0.267 Sum_probs=113.3
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~ 90 (227)
.++|++||.+..+..+|+.+|... +...-.+++ .||+||.+.+..+|.+|++ +++...+.|.++.+..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999876 444445543 4799999999999999999 888678999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCC
Q psy1680 91 GKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNS 170 (227)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 170 (227)
+++.+ ++.+-+.|+|+...|
T Consensus 75 ~kkqr-----------------------------------------------------------srk~Qirnippql~w- 94 (584)
T KOG2193|consen 75 PKKQR-----------------------------------------------------------SRKIQIRNIPPQLQW- 94 (584)
T ss_pred hHHHH-----------------------------------------------------------hhhhhHhcCCHHHHH-
Confidence 76642 335789999877644
Q ss_pred hhhHHhhhccccceEEEE-EeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 171 MNDHGLMVTEVTTLVSVR-LVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 171 ~~~l~~~f~~~g~i~~v~-i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
+.|..+...||.++.|. ++.|.+|- ..-|+|.+.+.+..|+.+++|..+.
T Consensus 95 -evld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 95 -EVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred -HHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhh
Confidence 67888999999999885 55565532 2347899999999999999998774
No 130
>KOG0226|consensus
Probab=98.64 E-value=2e-08 Score=77.83 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
.....+||.+-|.-+++++-|-..|.+| .....++++|+-|++++||+||.|.+..++..||. ++| ..++.++|+++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g-kyVgsrpiklR 265 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG-KYVGSRPIKLR 265 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc-cccccchhHhh
Confidence 3556899999999999999999999999 89999999999999999999999999999999999 999 99999999988
Q ss_pred ecCCCC
Q psy1680 88 IADGKR 93 (227)
Q Consensus 88 ~~~~~~ 93 (227)
.+..+.
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 776655
No 131
>KOG0132|consensus
Probab=98.55 E-value=5.2e-07 Score=79.89 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=57.4
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++||||+.|+.++ ++.||..+|++||.|.+|.++.. +|+|||...+..+|.+||.+|.+..+.+
T Consensus 421 SrTLwvG~i~k~v--~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 421 SRTLWVGGIPKNV--TEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eeeeeeccccchh--hHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccc
Confidence 6899999995544 89999999999999999988665 6899999999999999999999888765
No 132
>KOG4660|consensus
Probab=98.55 E-value=5.7e-08 Score=82.96 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.-+..+|+|.|||..+ +.++|+.+|+.||.|+.|+.-+. .+|..||+|-++-+|++|+++|++.+|.|+
T Consensus 72 ~~~~~~L~v~nl~~~V--sn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSV--SNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred cCccceEEEEecCCcC--CHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 4567899999997666 78999999999999999765444 479999999999999999999999999774
No 133
>KOG4209|consensus
Probab=98.50 E-value=3e-07 Score=72.38 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=77.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
....+...+||+|+.+.+|.++++..|+.+ .+..+.|..|+.++.++||+||+|.+.+.++.++.+++ ..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~g-s~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDG-SEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCC-ccccccccee
Confidence 345677999999999999999999999999 99999999999999999999999999999999999999 9999999999
Q ss_pred EecCCC
Q psy1680 87 DIADGK 92 (227)
Q Consensus 87 ~~~~~~ 92 (227)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887654
No 134
>KOG0112|consensus
Probab=98.48 E-value=7.6e-08 Score=86.24 Aligned_cols=148 Identities=14% Similarity=0.215 Sum_probs=113.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
...+.+||++||+..+++.+|+..|..+ .+..|.|-.-+. +.-.-|+||.|.+...+..|+. +.+ ..|..-.+.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~-~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESG-PLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcC-CccccCccccc
Confidence 3556899999999999999999999999 999988855422 3334599999999988888887 777 55544333333
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
+..++. .+...++++.|++-.
T Consensus 447 lG~~ks-----------------------------------------------------------t~ttr~~sgglg~w~ 467 (975)
T KOG0112|consen 447 LGQPKS-----------------------------------------------------------TPTTRLQSGGLGPWS 467 (975)
T ss_pred cccccc-----------------------------------------------------------ccceeeccCCCCCCC
Confidence 332211 244568899887544
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
....|..+|..||.|..|.+-.. .-||+|.|++...|++|++.|-|..|+|
T Consensus 468 --p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 468 --PVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred --hHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCC
Confidence 35778999999999998866333 2499999999999999999999998875
No 135
>KOG0153|consensus
Probab=98.47 E-value=2.4e-07 Score=74.91 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHH-cCCccccC
Q psy1680 151 RGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-DGRITVDG 226 (227)
Q Consensus 151 ~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~-l~g~~i~g 226 (227)
.+....+|||++|.+ ..++.+|++.|.+||.|++|++... +++|||+|.+.+.|+.|.++ ++...|+|
T Consensus 224 eD~~I~tLyIg~l~d--~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLND--EVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred cccceeEEEeccccc--chhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecc
Confidence 345568999999965 4478999999999999999999877 46999999999999988775 44444555
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.40 E-value=1.2e-06 Score=59.26 Aligned_cols=68 Identities=10% Similarity=-0.053 Sum_probs=58.4
Q ss_pred CcceeccCCCCCCCChhhHHhhhcc--ccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTE--VTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~--~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
.||.|+|+|... +.++|.+++.. .|...-+.|+.|..++-+.|||||-|.+++.|.+-.+..+|..+.
T Consensus 2 TTvMirNIPn~~--t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKY--TQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCC--CHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 589999998666 56777666554 267888999999999999999999999999999999999998875
No 137
>KOG0116|consensus
Probab=98.31 E-value=9.4e-07 Score=74.99 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=55.7
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
...+|||.|||++. +.++|.++|..||.|+...|....-.++...||||+|.+.+.++.|+++. -..|+|
T Consensus 287 ~~~~i~V~nlP~da--~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~ 356 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDA--TPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG 356 (419)
T ss_pred cccceEeecCCCCC--CHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC
Confidence 34569999997766 78889999999999998887765422444489999999999999999986 444444
No 138
>KOG4661|consensus
Probab=98.30 E-value=1.8e-06 Score=74.19 Aligned_cols=73 Identities=10% Similarity=0.161 Sum_probs=63.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+.+|+|..|+. .+-..||+.+|++||.|.-.+++.+..+-.-+=|+||+..+.++|.+||+.|+-.+|.||
T Consensus 403 ~~gRNlWVSGLSs--tTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 403 TLGRNLWVSGLSS--TTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred ccccceeeecccc--chhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 4568899999953 334588999999999999999999877666778999999999999999999999888886
No 139
>KOG1457|consensus
Probab=98.29 E-value=2.1e-06 Score=65.68 Aligned_cols=70 Identities=10% Similarity=-0.022 Sum_probs=57.1
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCC-cccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETD-RFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~-~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
..+||||..||.++ -..+|+-+|.+|..-+.+.|...-..+ ..+-+|||+|.+..+|.+|+.+|||..+|
T Consensus 33 ~VRTLFVSGLP~Dv--KpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDV--KPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD 103 (284)
T ss_pred ccceeeeccCCccc--CHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec
Confidence 35899999998777 468899999999888877665432222 35689999999999999999999999886
No 140
>KOG0151|consensus
Probab=98.25 E-value=1.2e-06 Score=76.89 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecC---CCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDK---ETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~---~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++....|||+||++.+ +++.|...|+.||.|-+++|+-.+ +....+.+|||.|.+..||++|++.|+|..+.+
T Consensus 171 DP~TTNlyv~Nlnpsv--~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSV--DENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCcccceeeecCCccc--cHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 3566789999997666 789999999999999999887532 223457899999999999999999999988754
No 141
>KOG4454|consensus
Probab=98.21 E-value=9.3e-07 Score=67.36 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=61.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+...||||.|+...+ +++-|.++|-.-|.|..|.|+.+++ ++.+ ||||.|.+.....-|++.+||..+.++
T Consensus 7 e~drtl~v~n~~~~v--~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGV--SEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred chhhHHHHHhhhhhh--hHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 456799999995444 7888999999999999999999977 6777 999999999999999999999988653
No 142
>KOG0151|consensus
Probab=98.17 E-value=3.9e-06 Score=73.86 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecC---CCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDK---ETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~---~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
.+-.++|||+||++.++++.|...|..| ++..++|+..+ ...+.+.++||.|-+..+|++|++ |+| ..+.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg-~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG-IIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc-eeeeeeee
Confidence 4556899999999999999999999999 99999988753 334566799999999999999999 999 99999999
Q ss_pred EEEecCCC
Q psy1680 85 RLDIADGK 92 (227)
Q Consensus 85 ~v~~~~~~ 92 (227)
++-|++.-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998643
No 143
>KOG4660|consensus
Probab=98.09 E-value=2.4e-06 Score=73.26 Aligned_cols=70 Identities=24% Similarity=0.388 Sum_probs=61.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.-+..+|+|-|||..+++++|+++|+.| +|..|+.-. ..++.+||+|-+..+|+.|++ |++ ..+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~-~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNR-REIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHH-HHhhhhhhc
Confidence 3456899999999999999999999999 999965543 337899999999999999999 999 999888776
No 144
>KOG4676|consensus
Probab=98.05 E-value=4.5e-06 Score=68.73 Aligned_cols=190 Identities=12% Similarity=0.075 Sum_probs=114.6
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecC---CCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDK---ETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~---~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
...|.|.||.+++|.++++.+|.-. .|.++.++-.. .-......|||.|.+...+..|-.|.+ +.+-++.|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn-tvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN-TVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc-ceeeeeeEEEEe
Confidence 3488999999999999999999888 89888776521 112345699999999999999988888 888888887766
Q ss_pred cCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCcc
Q psy1680 89 ADGKRNDNKGGFNNKQ------NRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDF----SRGGEGPGG 158 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l 158 (227)
.........-.+.... +.-...|-+.+.......++. .+........++. .-..-..++
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~-----------p~ailktP~Lp~~~~A~kleeirRt~ 154 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHS-----------PNAILKTPELPPQAAAKKLEEIRRTR 154 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCC-----------ccceecCCCCChHhhhhhhHHHHhhh
Confidence 5432221110000000 000001111111111000100 0000000000000 001123689
Q ss_pred eeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 159 FRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 159 ~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
+|.+|+.. +..+++...|..+|.|....+.-.. ..-+|-|+|........|+..++
T Consensus 155 ~v~sl~~~--~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~~g 210 (479)
T KOG4676|consen 155 EVQSLISA--AILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRSHG 210 (479)
T ss_pred hhhcchhh--hcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHhcc
Confidence 99999544 4678899999999999888775433 35577799988888888877654
No 145
>KOG4210|consensus
Probab=97.91 E-value=1.6e-05 Score=64.82 Aligned_cols=85 Identities=31% Similarity=0.511 Sum_probs=74.2
Q ss_pred CCCCceEE-EcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAF-VGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~-V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~ 87 (227)
.....++| |++|+..+++++|+.+|..+ .|..+++..++.++.++++|+|.|.....+.+++.... ..+.++++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQT-RSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhccc-CcccCcccccc
Confidence 34556677 99999999999999999999 99999999999999999999999999999888887645 78889999999
Q ss_pred ecCCCCCC
Q psy1680 88 IADGKRND 95 (227)
Q Consensus 88 ~~~~~~~~ 95 (227)
...+....
T Consensus 260 ~~~~~~~~ 267 (285)
T KOG4210|consen 260 EDEPRPKS 267 (285)
T ss_pred cCCCCccc
Confidence 98776544
No 146
>KOG1548|consensus
Probab=97.90 E-value=3.4e-05 Score=62.71 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=59.8
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceE--------EEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLV--------SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~--------~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..|||.+||.+. |.+++.++|++||.|. .|+|-++.. |..+|-|.+.|-..+...-|++.|++..|.|+
T Consensus 135 t~VYVsgLP~Di--T~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 135 TSVYVSGLPLDI--TVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ceEEecCCCCcc--cHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 459999997766 7899999999999774 367777754 88999999999999999999999999998874
No 147
>KOG1855|consensus
Probab=97.86 E-value=1.1e-05 Score=67.28 Aligned_cols=67 Identities=22% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeec---CCCCc----------ccceEEEEEcCHHHHHHHHHHc
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKD---KETDR----------FKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d---~~t~~----------~~g~afV~F~~~~~a~~Al~~l 219 (227)
-++++|.+-|||.+.. -+.|.++|+.+|.|.+|+|++. +...+ .+-+|+|+|+..+.|.+|.+.|
T Consensus 229 l~srtivaenLP~Dh~--~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHS--YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchH--HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3688999999987774 4889999999999999999987 33222 1457999999999999999998
Q ss_pred CC
Q psy1680 220 GR 221 (227)
Q Consensus 220 ~g 221 (227)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 63
No 148
>KOG0106|consensus
Probab=97.84 E-value=9.4e-06 Score=62.70 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.+||++||... .+.+|..+|..||.|..|.+.. ||+||+|++.-+|.-|+.-+||.+|.|
T Consensus 3 rv~vg~~~~~~--~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~ 62 (216)
T KOG0106|consen 3 RVYIGRLPYRA--RERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCG 62 (216)
T ss_pred ceeecccCCcc--chhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecc
Confidence 57999997666 6899999999999999887633 689999999999999999999999876
No 149
>KOG2314|consensus
Probab=97.83 E-value=2.1e-05 Score=67.72 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=57.5
Q ss_pred CCcceeccCCCC--C--CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 155 GPGGFRNNNGPN--R--SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 155 ~~~l~v~nl~~~--~--~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
...|+|-+.|-- . ..-..-|.++|+++|.|..+.++.+.+ |..+||.|++|.+..+|+.|++.|||+.|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 457888888721 1 112245678899999999999999977 559999999999999999999999999886
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.81 E-value=5e-05 Score=49.32 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=41.4
Q ss_pred cceeccCCCCCC--CChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 157 GGFRNNNGPNRS--NSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 157 ~l~v~nl~~~~~--~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.|+|.|||.+.+ ....-|++++..|| .|.+|. .+.|+|.|.+.+.|.+|++.|+|-.+-|
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG 66 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFG 66 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhccccccc
Confidence 589999986654 22355788888887 676662 3689999999999999999999877655
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.65 E-value=0.00011 Score=50.82 Aligned_cols=56 Identities=20% Similarity=0.072 Sum_probs=36.3
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
.|.+.+++.++ +.++|++.|+.||.|..|.+.+.- -.|+|.|.+++.|++|++++.
T Consensus 3 il~~~g~~~~~--~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGLGEPT--SREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE--SS----HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHH
T ss_pred EEEEecCCCCc--CHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHH
Confidence 46777776555 589999999999999999887653 379999999999999998764
No 152
>KOG0128|consensus
Probab=97.63 E-value=3.7e-06 Score=75.36 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=108.8
Q ss_pred ceEEEcCCCCCCCHH-HHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQG-DVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~-~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~~ 91 (227)
....+.++.+..... ..+..|..+ .+..|.+......-....+.++.+..+.+++.+..-.+ ..+.++...|..+.+
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~-~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAG-GALANRSAAVGLADA 650 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccc-cccCCccccCCCCCc
Confidence 445566676665555 456778888 89999887632212222377888888888888877555 566666666655554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCCh
Q psy1680 92 KRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSM 171 (227)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 171 (227)
+..... ..+. ........++||.||++.. .+
T Consensus 651 ~~~~~~------------------~kvs-----------------------------~n~~R~~~~~fvsnl~~~~--~~ 681 (881)
T KOG0128|consen 651 EEKEEN------------------FKVS-----------------------------PNEIRDLIKIFVSNLSPKM--SE 681 (881)
T ss_pred hhhhhc------------------cCcC-----------------------------chHHHHHHHHHHhhcchhh--cC
Confidence 432110 0000 0000123578999997666 67
Q ss_pred hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 172 NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
.+|...|++++.+..+++.--..+++.+|+|+|+|..+++|.+|+....+..+
T Consensus 682 ~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 682 EDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred chhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 89999999999888887775556688999999999999999999987765543
No 153
>KOG1995|consensus
Probab=97.62 E-value=5.3e-05 Score=61.99 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-Ce--------EEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCcee
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KL--------VSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV 79 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i--------~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~ 79 (227)
....-+|||-+||..+++++|..+|.++ .| ..|+|-+++.|++.|+-|.|.|.+...|+.|+. +++ ..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag-kdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG-KDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc-ccc
Confidence 4556899999999999999999999887 44 257788899999999999999999999999999 999 999
Q ss_pred CCeEeEEEecCCCC
Q psy1680 80 DGLQVRLDIADGKR 93 (227)
Q Consensus 80 ~g~~l~v~~~~~~~ 93 (227)
.+..|+|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998887554
No 154
>KOG4849|consensus
Probab=97.61 E-value=3.7e-05 Score=62.58 Aligned_cols=75 Identities=16% Similarity=0.308 Sum_probs=64.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC---CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~---~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
.....+||+||-|.+|++||.+..... .+.+++....+.+|.+||||+|...+..++.+.|+ |.. ..|.|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~-k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPT-KTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccc-ceecCCCCee
Confidence 344678999999999999988776544 67888888899999999999999999999999999 888 8998875444
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.59 E-value=5.7e-05 Score=49.06 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=45.2
Q ss_pred ceEEEcCCCCCCCHHHHH----hcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 14 YTAFVGNLPNGITQGDVE----RFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~----~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
..|+|.|||.+.+...|+ +++.-+ .|..| . .+.|+|.|.+.+.|.+|.+ ++| -.+-|+.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmeg-EdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEG-EDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT---SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcc-cccccceEEE
Confidence 468999999998887655 555555 45543 2 3689999999999999999 999 9999999999
Q ss_pred EecCCC
Q psy1680 87 DIADGK 92 (227)
Q Consensus 87 ~~~~~~ 92 (227)
.+....
T Consensus 72 ~~~~~~ 77 (90)
T PF11608_consen 72 SFSPKN 77 (90)
T ss_dssp ESS--S
T ss_pred EEcCCc
Confidence 997543
No 156
>KOG1996|consensus
Probab=97.54 E-value=0.00018 Score=57.44 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=49.5
Q ss_pred CChhhHHhhhccccceEEEEEeecCCCCccc-ceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 169 NSMNDHGLMVTEVTTLVSVRLVKDKETDRFK-GFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~-g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.++++...|++||.|..|.|.-++..-..+ ---||+|.++++|.+|+--|||+.++||
T Consensus 298 elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 298 ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce
Confidence 3467889999999999999998886433332 2469999999999999999999999997
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.00019 Score=43.11 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=40.0
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHH
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al 216 (227)
.|-|...++.. .+.+...|..||.|+.+.+... ....+|+|.+..+|++||
T Consensus 3 wI~V~Gf~~~~---~~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDL---AEEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchH---HHHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 45666664322 5778889999999999988633 358999999999999996
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.46 E-value=0.00049 Score=47.55 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-h--C---CCceeCCeEeEE
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K--D---GRITVDGLQVRL 86 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~--~---~~~~~~g~~l~v 86 (227)
+.|+|.+++..++.++|++.|++| .|..|.+.+. -..|+|.|.+.+.|+.|+. + . + ..+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~-~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGK-LKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS--B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCc-eEEcCceEEE
Confidence 468899999999999999999999 9999998654 3489999999999999997 3 2 3 5666666665
Q ss_pred Eec
Q psy1680 87 DIA 89 (227)
Q Consensus 87 ~~~ 89 (227)
...
T Consensus 75 ~vL 77 (105)
T PF08777_consen 75 EVL 77 (105)
T ss_dssp E--
T ss_pred EEC
Confidence 543
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.41 E-value=0.00037 Score=56.72 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=55.1
Q ss_pred CCCcceeccCCCCCCCChh---hH--HhhhccccceEEEEEeecCCCCccc-c-e-EEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 154 EGPGGFRNNNGPNRSNSMN---DH--GLMVTEVTTLVSVRLVKDKETDRFK-G-F-CYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~---~l--~~~f~~~g~i~~v~i~~d~~t~~~~-g-~-afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
+.+-+||-.+|+.+- .|+ -| .++|+.||.|..|.+.+.-....+. + + .+++|.+.|||.+|+...+|..+|
T Consensus 113 QKNLvYVigi~pkva-~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 113 QKNLVYVIGIPPKVA-DEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred ecceeEEecCCCCCC-cccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 445689999987664 233 23 5689999999999887754222221 2 2 399999999999999999999999
Q ss_pred CC
Q psy1680 226 GL 227 (227)
Q Consensus 226 gr 227 (227)
||
T Consensus 192 Gr 193 (480)
T COG5175 192 GR 193 (480)
T ss_pred Cc
Confidence 97
No 160
>KOG1995|consensus
Probab=97.35 E-value=0.00054 Score=56.21 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=62.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceE--------EEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLV--------SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~--------~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
....+|||-.||+.+ ++++|.++|..++.|. .|.|-+|++|+.+||-|.|.|++...|++|++-.++..+
T Consensus 64 s~~~ti~v~g~~d~~--~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSV--CENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccceeeccCccc--hHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 445789999997655 7899999999999773 456778999999999999999999999999999998877
Q ss_pred cC
Q psy1680 225 DG 226 (227)
Q Consensus 225 ~g 226 (227)
.|
T Consensus 142 ~g 143 (351)
T KOG1995|consen 142 CG 143 (351)
T ss_pred cC
Confidence 54
No 161
>KOG0115|consensus
Probab=97.33 E-value=0.00047 Score=54.07 Aligned_cols=60 Identities=15% Similarity=-0.010 Sum_probs=52.3
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
.|+|.||+.-+ +.|.+.+.|+.||.|....+..| +.++..+-++|+|...-.|.+|+..+
T Consensus 33 ~l~V~nl~~~~--sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 33 ELYVVNLMQGA--SNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eEEEEecchhh--hhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHh
Confidence 38999997655 56778999999999998888888 56999999999999999999999877
No 162
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.29 E-value=0.0009 Score=43.52 Aligned_cols=54 Identities=7% Similarity=0.029 Sum_probs=41.4
Q ss_pred eeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 159 FRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 159 ~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
.|..|.++..+-..||.++|++||.|. |.++-|- -|||...+.++|..|+..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 444455567777899999999999876 8887773 69999999999999988775
No 163
>KOG3152|consensus
Probab=97.29 E-value=0.00013 Score=57.19 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=59.9
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCC--------Cccc----ceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKET--------DRFK----GFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t--------~~~~----g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
...||++++|+..+ ..-|+++++.||.|-.|.|.+...+ |.++ --|+|+|.+.-.|.++.+.|||.
T Consensus 74 ~GVvylS~IPp~m~--~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMD--PVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ceEEEeccCCCccC--HHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 36899999998884 5779999999999999999887665 2222 23689999999999999999999
Q ss_pred cccCC
Q psy1680 223 TVDGL 227 (227)
Q Consensus 223 ~i~gr 227 (227)
.|+|+
T Consensus 152 ~Iggk 156 (278)
T KOG3152|consen 152 PIGGK 156 (278)
T ss_pred ccCCC
Confidence 99986
No 164
>KOG4849|consensus
Probab=97.13 E-value=0.00028 Score=57.62 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=59.7
Q ss_pred CcceeccCCCCCCCChhhHHhhhcccc--ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVT--TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g--~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
-.+||+|| .+-+|.+||.+.....| .|.+++++.++..|.+||||.|-..+....++-++.|-.++|.|.
T Consensus 81 ~~~YvGNL--~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 81 YCCYVGNL--LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred EEEEecce--eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 35899999 55557788877777666 677889999999999999999999999999999999999998873
No 165
>KOG0129|consensus
Probab=97.07 E-value=0.0019 Score=55.46 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=67.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhccc-CC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCC----CceeC
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFP-EQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG----RITVD 80 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~----~~~~~ 80 (227)
..+.++.++||||+||.-++-++|-.+|+ -| .|+.+.|-.|+.=+-++|-|=|.|++..+..+||...= +..+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~ 443 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID 443 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc
Confidence 34568889999999999999999999999 56 89999999997778999999999999999999996222 02332
Q ss_pred CeEeEEEecC
Q psy1680 81 GLQVRLDIAD 90 (227)
Q Consensus 81 g~~l~v~~~~ 90 (227)
++|+|+..-
T Consensus 444 -KRVEIkPYv 452 (520)
T KOG0129|consen 444 -KRVEIKPYV 452 (520)
T ss_pred -eeeeeccee
Confidence 366665543
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.01 E-value=0.0018 Score=52.87 Aligned_cols=78 Identities=14% Similarity=0.336 Sum_probs=60.3
Q ss_pred CceEEEcCCCCCCCHHH----H--HhcccCC-CeEEEEEeecCCC-CCeecE--EEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 13 PYTAFVGNLPNGITQGD----V--ERFFPEQ-KLVSVRLVKDKET-DRFKGF--CYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~----l--~~~f~~~-~i~~v~i~~~~~~-~~~~g~--afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
.+-+||-+||+.+..++ | .++|.+| .|..|.|-+...+ ....+. .||.|.+.++|.+||. .+| ..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg-s~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG-SLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc-ccccC
Confidence 46789999998866655 3 3799999 9999888654312 222232 3999999999999999 999 99999
Q ss_pred eEeEEEecCC
Q psy1680 82 LQVRLDIADG 91 (227)
Q Consensus 82 ~~l~v~~~~~ 91 (227)
+.|+..+...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999887664
No 167
>KOG2202|consensus
Probab=96.86 E-value=0.00039 Score=54.54 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=46.2
Q ss_pred hhHHhhhc-cccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 172 NDHGLMVT-EVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 172 ~~l~~~f~-~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+|+..+|+ +||.|+++.+..+.. ..-.|=++|.|...++|++|++.|||.-++|+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~ 138 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR 138 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCC
Confidence 56666677 899999998877643 34578899999999999999999999999886
No 168
>KOG2416|consensus
Probab=96.82 E-value=0.00093 Score=58.25 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=63.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCcee---C
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV---D 80 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~---~ 80 (227)
|.....++.|||.||-.-.|..+|+.++..- .|...|| .+.+..|||.|.+.++|..... ||| ..| +
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~Alhn-V~WP~sN 510 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHN-VQWPPSN 510 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhc-cccCCCC
Confidence 3456788999999999999999999999855 5666644 2347899999999999999998 999 776 5
Q ss_pred CeEeEEEecCC
Q psy1680 81 GLQVRLDIADG 91 (227)
Q Consensus 81 g~~l~v~~~~~ 91 (227)
.+.|.+.+...
T Consensus 511 PK~L~adf~~~ 521 (718)
T KOG2416|consen 511 PKHLIADFVRA 521 (718)
T ss_pred CceeEeeecch
Confidence 67888888764
No 169
>KOG2314|consensus
Probab=96.82 E-value=0.0059 Score=53.16 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=61.6
Q ss_pred CCCceEEEcCCCCCC--CHH----HHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC-C
Q psy1680 11 EPPYTAFVGNLPNGI--TQG----DVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-G 81 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~--t~~----~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~-g 81 (227)
.-...|+|.|+|.-- ..+ -|..+|+++ ++....++.+..+| ++||.|++|.+..+|+.|++ +|| ..|+ .
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G-~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNG-KRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhccc-ceeccc
Confidence 455788999998542 222 366789999 99999999887755 89999999999999999999 999 7664 5
Q ss_pred eEeEEEecC
Q psy1680 82 LQVRLDIAD 90 (227)
Q Consensus 82 ~~l~v~~~~ 90 (227)
++..|..-+
T Consensus 134 Htf~v~~f~ 142 (698)
T KOG2314|consen 134 HTFFVRLFK 142 (698)
T ss_pred ceEEeehhh
Confidence 677775543
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.55 E-value=0.0048 Score=36.94 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=41.1
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHH
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 71 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al 71 (227)
+.|-|.|.++...+ ++..+|..| +|.++.+.. ...+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46778899987664 456689999 999988862 2569999999999999985
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.51 E-value=0.005 Score=42.00 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=41.3
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEE-EeecCC------CCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVR-LVKDKE------TDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~-i~~d~~------t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
-|.|...|+. ..+.+.+.|++||.|.+.. +.++.. ......+--|+|+++.+|.+||.. ||..|+|
T Consensus 8 wVtVFGfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g 80 (100)
T PF05172_consen 8 WVTVFGFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSG 80 (100)
T ss_dssp EEEEE---GG---GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETT
T ss_pred EEEEEccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcC
Confidence 4666666543 3578999999999998774 222100 011245889999999999999976 4455655
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.48 E-value=0.0099 Score=40.57 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=51.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEE-EeecC------CCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVR-LVKDK------ETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 82 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~-i~~~~------~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~ 82 (227)
...+-|.|-|.|+.. -..|.++|++| .|.+.. +.++. .......+-.|.|.+..+|.+||..|| ..+.|.
T Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG-~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNG-TIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTT-EEETTC
T ss_pred cCCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCC-eEEcCc
Confidence 345668888999884 46678899999 887764 11100 001224699999999999999999999 999886
Q ss_pred -EeEEEecC
Q psy1680 83 -QVRLDIAD 90 (227)
Q Consensus 83 -~l~v~~~~ 90 (227)
.+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 45566653
No 173
>KOG2416|consensus
Probab=96.41 E-value=0.002 Score=56.19 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=54.8
Q ss_pred CCCCCCCCCCcceeccCCCCCCCChhhHHhhhcc-ccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 147 NDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTE-VTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 147 ~~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~-~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
..+++.++++.|+|.||=-+ .|.-+|+.+... +|.|++. || | +.+..|||.|.+.++|.+...+|+|..+
T Consensus 436 pSPsR~~~SnvlhI~nLvRP--FTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRP--FTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCCCCCccceEeeeccccc--chHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhcccc
Confidence 34456678899999999433 478999999994 5566655 32 3 3467899999999999999999999865
No 174
>KOG3152|consensus
Probab=96.28 E-value=0.0017 Score=51.04 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=59.0
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCC--------CCee----cEEEEEeCCHHHHHHHHH-hCCCc
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKET--------DRFK----GFCYVEFVDVENLRQALL-KDGRI 77 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~--------~~~~----g~afv~f~~~~~a~~al~-~~~~~ 77 (227)
..-.||+++||+.+...-|+++|+.| .|-.|.+-....+ +.+. .-|+|+|.+...|..+.. ||+ .
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn-~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN-T 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC-C
Confidence 45789999999999999999999999 9999988765444 2222 347899999999999988 999 9
Q ss_pred eeCCeE
Q psy1680 78 TVDGLQ 83 (227)
Q Consensus 78 ~~~g~~ 83 (227)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 888874
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.20 E-value=0.018 Score=41.85 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=50.6
Q ss_pred CCCCceEEEcCCCC------CCCH---HHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCcee
Q psy1680 10 TEPPYTAFVGNLPN------GITQ---GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 79 (227)
Q Consensus 10 ~~~~~~l~V~nLp~------~~t~---~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~ 79 (227)
.++..+|.|.=+.+ ...+ .+|-+.|..| .+.-++++- +.-+|+|.+-++|.+|+.++| .++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals~dg-~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALSLDG-IQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHHGCC-SEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHccCC-cEE
Confidence 45667777764441 2222 2566778888 888777763 358999999999999999999 999
Q ss_pred CCeEeEEEecCC
Q psy1680 80 DGLQVRLDIADG 91 (227)
Q Consensus 80 ~g~~l~v~~~~~ 91 (227)
+|+.|.|++.++
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999998765
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.10 E-value=0.027 Score=34.73 Aligned_cols=53 Identities=23% Similarity=0.449 Sum_probs=43.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC----CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ----KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~----~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~ 72 (227)
....|+|+|+. +++-++|+.+|..| ....|.++-|. -|-|.|.+.+.|.+||.
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 35689999995 56778899999887 56788888763 48899999999999986
No 177
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.96 E-value=0.021 Score=43.31 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccC-C-Ce---EEEE--EeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPE-Q-KL---VSVR--LVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~-~i---~~v~--i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
.....+|.|++||+++|++++.+.++. + .. ..+. ..........-.-|||.|.+.+++...+. ++| ..|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g-~~F~D 82 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG-HVFVD 82 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT-EEEE-
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC-cEEEC
Confidence 345679999999999999999998887 4 33 2332 11111111234579999999999999988 999 66643
Q ss_pred e-----EeEEEecC
Q psy1680 82 L-----QVRLDIAD 90 (227)
Q Consensus 82 ~-----~l~v~~~~ 90 (227)
. +..|.+|-
T Consensus 83 ~kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 83 SKGNEYPAVVEFAP 96 (176)
T ss_dssp TTS-EEEEEEEE-S
T ss_pred CCCCCcceeEEEcc
Confidence 2 34455554
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.85 E-value=0.036 Score=34.16 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccc---cceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEV---TTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~---g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
...|+|..+. .+ +.+||+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~l--sT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-EL--STDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CC--CHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3468888883 33 568999999998 135578888884 4889999999999999875
No 179
>KOG1855|consensus
Probab=95.85 E-value=0.066 Score=45.35 Aligned_cols=66 Identities=26% Similarity=0.300 Sum_probs=54.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeec---CCCC--C--------eecEEEEEeCCHHHHHHHHH-hC
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKD---KETD--R--------FKGFCYVEFVDVENLRQALL-KD 74 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~---~~~~--~--------~~g~afv~f~~~~~a~~al~-~~ 74 (227)
+-++++|.+-|||.+-.-+-|.++|..+ .|..|+|..- +.+. . .+-+|+|+|...+.|.+|-+ ++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4478999999999998889999999999 9999998765 3322 1 24589999999999999999 54
Q ss_pred C
Q psy1680 75 G 75 (227)
Q Consensus 75 ~ 75 (227)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 180
>KOG2068|consensus
Probab=95.84 E-value=0.0074 Score=49.38 Aligned_cols=71 Identities=8% Similarity=-0.013 Sum_probs=53.6
Q ss_pred CcceeccCCCCCCCChhhH--HhhhccccceEEEEEeecCCCCc---ccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDH--GLMVTEVTTLVSVRLVKDKETDR---FKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l--~~~f~~~g~i~~v~i~~d~~t~~---~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+-+||..|++... .++.| ...|+.||.|..|.+.+++-+.. ..--++|+|...|+|..||...+|..++||
T Consensus 78 nlvyvvgl~~~~a-de~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 78 NLVYVVGLPLDLA-DESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhCCCcccc-chhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 4567878875553 45555 45799999999999998862111 112379999999999999999999999886
No 181
>KOG4676|consensus
Probab=95.78 E-value=0.008 Score=50.10 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=54.8
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCC---cccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETD---RFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~---~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
.|-|.||.+.+ +.|++.-+|+-.|.|..+.|....+.- ...-.|||.|.+...+..|..+.|-..||
T Consensus 9 vIqvanispsa--t~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvd 78 (479)
T KOG4676|consen 9 VIQVANISPSA--TKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVD 78 (479)
T ss_pred eeeecccCchh--hHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeee
Confidence 78999997666 789999999999999999998754322 23568999999999999998887766554
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.71 E-value=0.044 Score=35.78 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=40.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hC
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD 74 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~ 74 (227)
...+..+|. +|..|...||.++|+.|.-+.|.++-| .-|||.....+.|..++. +.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 345666776 999999999999999994445666554 269999999999999987 44
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.64 E-value=0.042 Score=39.93 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=45.8
Q ss_pred CCCCCcceeccCCCCCCCC-------hhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 152 GGEGPGGFRNNNGPNRSNS-------MNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~-------~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
+||..|+.|.-+.+..... .++|.+.|+.||.+.-+++.-+ .-+|+|.+-+.|-+|+. ++|..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3677788888776222111 2467888999998888887665 47999999999999875 566777
Q ss_pred cCC
Q psy1680 225 DGL 227 (227)
Q Consensus 225 ~gr 227 (227)
+|+
T Consensus 95 ~g~ 97 (146)
T PF08952_consen 95 NGR 97 (146)
T ss_dssp TTE
T ss_pred CCE
Confidence 764
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.57 E-value=0.18 Score=35.09 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=48.3
Q ss_pred CceEE-EcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 13 PYTAF-VGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 13 ~~~l~-V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
...|. +...|..++-++|..+.+.+ .|.+++|++|.. .++=.+++.|.+.++|...-. +|| ..++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNG-k~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNG-KPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCC-CccCC
Confidence 34444 44444555556777777777 688999998743 345589999999999999998 999 87764
No 185
>KOG0112|consensus
Probab=95.35 E-value=0.019 Score=52.65 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC--eEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g--~~l 84 (227)
....++.+|+++|...+....|...|..| .|..|.+-.. ..||+|.|.+...++.|++ +.+ ..|++ +++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rg-ap~G~P~~r~ 523 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRG-APLGGPPRRL 523 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhc-CcCCCCCccc
Confidence 45678999999999999999999999999 9988877432 4699999999999999999 999 88876 578
Q ss_pred EEEecCC
Q psy1680 85 RLDIADG 91 (227)
Q Consensus 85 ~v~~~~~ 91 (227)
.|.++.+
T Consensus 524 rvdla~~ 530 (975)
T KOG0112|consen 524 RVDLASP 530 (975)
T ss_pred ccccccC
Confidence 8888764
No 186
>KOG2202|consensus
Probab=95.08 E-value=0.0077 Score=47.44 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=46.5
Q ss_pred HHHhccc-CC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 29 DVERFFP-EQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 29 ~l~~~f~-~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
++...|+ +| +|..+.|-.. ..-...|-++|.|...++|++|++ ||+ ..+.|++|...+..-
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnn-Rw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNN-RWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcC-ccccCCcceeeecCc
Confidence 3444444 77 7877755433 223447899999999999999999 999 999999999888653
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.83 E-value=0.32 Score=33.82 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=49.0
Q ss_pred CcceeccCCCCCCCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
..+.+--.|+.. .+.++|..+.+++- .|..++|++|.. .++-.+.++|.+.++|..-.+..||+.++
T Consensus 13 ~~~~~l~vp~~~-~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYM-TPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCccc-ccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444444333 35677776666665 777889999843 35567899999999999999999999875
No 188
>KOG1996|consensus
Probab=94.22 E-value=0.15 Score=41.20 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=49.3
Q ss_pred HHHHhcccCC-CeEEEEEeecCCCCCeec-EEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecC
Q psy1680 28 GDVERFFPEQ-KLVSVRLVKDKETDRFKG-FCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 28 ~~l~~~f~~~-~i~~v~i~~~~~~~~~~g-~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~ 90 (227)
+++.+.+++| .|..|.|...+..-...- --||+|...++|.+|+- +|| ..|+|+.++..+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG-RyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG-RYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC-ceecceeeeheecc
Confidence 3577889999 999888876644332222 47999999999999998 999 99999999877654
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.89 E-value=0.12 Score=39.10 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=44.9
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhcc-ccce---EEEEEeecCCCCc--ccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTE-VTTL---VSVRLVKDKETDR--FKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~-~g~i---~~v~i~~d~~t~~--~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
....|.|++||+.+ |++++++.+++ ++.- ..+.-......-. .-.-|+|.|.+.+++..-...++|+.+-
T Consensus 6 ~~~KvVIR~LPP~L--teeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNL--TEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS---HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCC--CHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 34589999999888 78999988887 6644 2333112211111 1246999999999999999999997763
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.80 E-value=0.2 Score=36.16 Aligned_cols=65 Identities=12% Similarity=-0.066 Sum_probs=48.4
Q ss_pred CCCCCcceeccCCCCCCCCh--hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcc
Q psy1680 152 GGEGPGGFRNNNGPNRSNSM--NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT 223 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~--~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~ 223 (227)
++|=.||.|+=|..+...++ ..+.+..+.||.|.+|.++=.. .|.|.|.+...|=+|+.+.+...
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCC
Confidence 45667888887765554322 3445567889999999876442 59999999999999999887643
No 191
>KOG0804|consensus
Probab=93.59 E-value=0.2 Score=42.77 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=57.9
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
+..|+|-.+|..++-.||-.|+..+ .|.+++|++|.. ..+=..+|.|.+..+|...-+ +|| ..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNG-k~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNG-KQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCC-CcCCC
Confidence 7899999999999999999999988 799999999643 234578999999999999998 999 88865
No 192
>KOG2193|consensus
Probab=93.34 E-value=0.084 Score=44.70 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=44.0
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcc
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT 223 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~ 223 (227)
+.+|++||++.. +.+||..+|...-.--+=.++.. .||+||...+..-|.+|++.++|..
T Consensus 2 nklyignL~p~~--~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~ 61 (584)
T KOG2193|consen 2 NKLYIGNLSPQV--TPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKV 61 (584)
T ss_pred CcccccccCCCC--ChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhh
Confidence 368999998766 78999999986410011111111 4899999999999999999998853
No 193
>KOG4574|consensus
Probab=93.15 E-value=0.047 Score=49.97 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=45.7
Q ss_pred CCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 167 RSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 167 ~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
+..+-..|..+|+.||.|.++..++|. ..|.|+|.+.+.|..|+++++|+++
T Consensus 308 v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 308 VNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred ccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcc
Confidence 344567789999999999999988885 4899999999999999999999875
No 194
>KOG0115|consensus
Probab=93.08 E-value=0.091 Score=41.58 Aligned_cols=58 Identities=22% Similarity=0.191 Sum_probs=51.5
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~ 72 (227)
..|||.||+..+..+.|.+-|+.| +|....++.| ..++..+-++|.|...-.+.+|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHH
Confidence 789999999999999999999999 8887766666 447778899999999999999998
No 195
>KOG2068|consensus
Probab=92.98 E-value=0.051 Score=44.60 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=59.7
Q ss_pred ceEEEcCCCCCCCHH-HHH--hcccCC-CeEEEEEeecCC----CCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 14 YTAFVGNLPNGITQG-DVE--RFFPEQ-KLVSVRLVKDKE----TDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~-~l~--~~f~~~-~i~~v~i~~~~~----~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+.+||-+|+.....+ .|+ ++|.+| .|..|.+.+++. .+-.. -++|.|...++|..||. .+| +.++|+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g-~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDG-FVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhh-HHhhhhhh
Confidence 567888888775544 444 689999 999998887652 12222 38999999999999999 999 99999998
Q ss_pred EEEecCCCC
Q psy1680 85 RLDIADGKR 93 (227)
Q Consensus 85 ~v~~~~~~~ 93 (227)
+..+...+-
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 877766543
No 196
>KOG0804|consensus
Probab=92.81 E-value=0.34 Score=41.49 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=56.1
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
++..|+|--+|.-. +--||..|+.++- .|..++|++|.. ..+-.+.++|.+.++|..-.+.+||..++
T Consensus 73 ~~~mLcilaVP~~m--t~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYM--TSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccc--cHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 47789999997555 5678888888775 889999999754 33456899999999999999999999886
No 197
>KOG2253|consensus
Probab=90.56 E-value=0.41 Score=42.86 Aligned_cols=63 Identities=16% Similarity=0.017 Sum_probs=51.6
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++..++||+|+.... ..+=++.+...+|.|.++.... |||++|..+..+.+|+..+.-..++|
T Consensus 38 ~~~~~vfv~~~~~~~--s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLV--SQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CCCceeEecchhhhh--hHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 567789999995444 4555688899999888875433 89999999999999999999888876
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.66 E-value=1 Score=34.36 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=43.7
Q ss_pred CHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hC--CCceeCCeEeEEEecCCC
Q psy1680 26 TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD--GRITVDGLQVRLDIADGK 92 (227)
Q Consensus 26 t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~--~~~~~~g~~l~v~~~~~~ 92 (227)
....|+.+|..+ .+.....++. -+=..|.|.+.+.|..|.. ++ + ..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~-~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDG-TSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--T-SEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccc-cccCCCceEEEEcccc
Confidence 347799999999 8777766643 3458899999999999999 88 8 9999999999988543
No 199
>KOG2135|consensus
Probab=89.39 E-value=0.28 Score=42.25 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=60.8
Q ss_pred CCCCCceEEEcCCCCCC-CHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGI-TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~-t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
.....+.|-+.-.|+.. |.++|...|.+| .|..|.+-.. -.-|.|+|.+..+|-.|-..++ ..|+++.|+|
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~-avlnnr~iKl 440 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHG-AVLNNRFIKL 440 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhcccc-ceecCceeEE
Confidence 34455566666666653 557899999999 9999888543 3479999999999988888888 9999999999
Q ss_pred EecCC
Q psy1680 87 DIADG 91 (227)
Q Consensus 87 ~~~~~ 91 (227)
.|-.+
T Consensus 441 ~whnp 445 (526)
T KOG2135|consen 441 FWHNP 445 (526)
T ss_pred EEecC
Confidence 99776
No 200
>KOG4285|consensus
Probab=88.55 E-value=1.1 Score=36.56 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=38.2
Q ss_pred hhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 171 MNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 171 ~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
..-|..+|++||.|.......+ -.+-.|.|.+.-+|.+||.+ ||+.|+|
T Consensus 210 ~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g 258 (350)
T KOG4285|consen 210 VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDG 258 (350)
T ss_pred hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeecc
Confidence 3557889999999987765422 35789999999999999986 4566665
No 201
>KOG2591|consensus
Probab=85.92 E-value=3.3 Score=36.68 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=42.3
Q ss_pred CcceeccCCCCCCCChhhHHhhhcc--ccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTE--VTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~--~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
..+.++.+|... -+|+++.+|.. |..+.+|.+--+- -=||+|++..||+.|.+.|
T Consensus 176 cIvilREIpett--p~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 176 CIVILREIPETT--PIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred eEEEEeecCCCC--hHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHH
Confidence 457888886444 56889999985 6788889875542 2589999999999997654
No 202
>KOG4483|consensus
Probab=83.80 E-value=2.6 Score=35.73 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=49.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHh
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~ 73 (227)
.+-.+.|=|-++|....-+||...|+.| .-.+|.|+-|. .+|..|.+...|..||.+
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4456888899999998888999999999 67888888764 699999999999999985
No 203
>KOG2591|consensus
Probab=83.38 E-value=3 Score=36.96 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=53.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccC--C-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCC-ceeCCeE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPE--Q-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQ 83 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~--~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~-~~~~g~~ 83 (227)
+....|.|+++-||.++-.++++.+|.. + +++.|..-.. .-=||+|.+..+|+.|.+ |.-+ .+|.|++
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 4456688999999999999999999975 4 7777765322 236899999999999987 4321 4667776
Q ss_pred eEE
Q psy1680 84 VRL 86 (227)
Q Consensus 84 l~v 86 (227)
|..
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 543
No 204
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.29 E-value=8.8 Score=23.98 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=41.0
Q ss_pred CCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 24 GITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 24 ~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
.++-++++.-+..|....|.. | +--=||.|.+..+|+++.. .++ ..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~--d------~tGfYIvF~~~~Ea~rC~~~~~~-~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRD--D------RTGFYIVFNDSKEAERCFRAEDG-TLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEEe--c------CCEEEEEECChHHHHHHHHhcCC-CEEEEEEEEe
Confidence 367788998898886666554 2 1246899999999999999 888 8877776654
No 205
>KOG2253|consensus
Probab=81.29 E-value=0.94 Score=40.70 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=56.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
..+.++..+|||+|+...+..+-++.+...+ -|..+... .|+|..|..+.....|+. +.- ..++|..+
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~-~~~~~~kl 103 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTE-LNIDDQKL 103 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcc-cCCCcchh
Confidence 3466788999999999999988888877776 55554443 299999999999999998 666 78888776
Q ss_pred EEEe
Q psy1680 85 RLDI 88 (227)
Q Consensus 85 ~v~~ 88 (227)
.+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 6554
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=80.56 E-value=2.4 Score=28.20 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=25.7
Q ss_pred EEEEeCCHHHHHHHHH--hCCCceeCCeEeEEEec
Q psy1680 57 CYVEFVDVENLRQALL--KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 57 afv~f~~~~~a~~al~--~~~~~~~~g~~l~v~~~ 89 (227)
|+|+|.+..-|++.+. .+. ..+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~-v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHP-VPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEE-EEECCEEEEEEEE
Confidence 6899999999999998 455 7788887776654
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.41 E-value=4.7 Score=25.66 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCCCHHHHHhcccCC-C-----eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 23 NGITQGDVERFFPEQ-K-----LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 23 ~~~t~~~l~~~f~~~-~-----i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
..++..+|..++..- . |-.|.|. ..|+||+.... .|..++. +++ ..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~-~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNG-KKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT---SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcC-CCCCCeeEEEEEC
Confidence 346777777777554 3 4456664 34999999874 6888888 999 9999999999864
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=79.88 E-value=10 Score=27.67 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=48.5
Q ss_pred CCCCceEEEcCCCCCCCH-HHHH---hcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 10 TEPPYTAFVGNLPNGITQ-GDVE---RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~-~~l~---~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
+++-.+|.|+=|..++.. +||+ ..++.| +|..|.+.- +..|.|.|.+..+|.+|+. +.. ..-|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s--~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS--RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC--CCCCce
Confidence 455678888877666543 3444 456778 898887752 4579999999999999998 544 334455
Q ss_pred eEEEe
Q psy1680 84 VRLDI 88 (227)
Q Consensus 84 l~v~~ 88 (227)
+...|
T Consensus 154 ~qCsW 158 (166)
T PF15023_consen 154 FQCSW 158 (166)
T ss_pred EEeec
Confidence 55444
No 209
>KOG4285|consensus
Probab=79.65 E-value=7.3 Score=31.95 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=54.5
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeE-eEEEecC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQ-VRLDIAD 90 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~-l~v~~~~ 90 (227)
..=|-|-++|+.-. ..|..+|+++ .|.+.... ..-.+-+|.|.+.-+|++||..+| ..|+|.. |-|....
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng-~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNG-TIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcC-eeeccceEEeeeecC
Confidence 45566778887644 4567789999 88765443 223599999999999999999999 8888864 5566655
Q ss_pred CCCC
Q psy1680 91 GKRN 94 (227)
Q Consensus 91 ~~~~ 94 (227)
.+..
T Consensus 269 Dksv 272 (350)
T KOG4285|consen 269 DKSV 272 (350)
T ss_pred CHHH
Confidence 5543
No 210
>KOG2318|consensus
Probab=79.20 E-value=5.7 Score=35.44 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=53.9
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccc----cceEEEEEeecC----------CCCc--------------------
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEV----TTLVSVRLVKDK----------ETDR-------------------- 197 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~----g~i~~v~i~~d~----------~t~~-------------------- 197 (227)
+.+.+.|-|-||-++.. ...||..+|+.| |.|.+|.|.+-. .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v-~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRV-KAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccc-cHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 45678899999954333 357898888865 589999887521 0111
Q ss_pred -----------------ccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 198 -----------------FKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 198 -----------------~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
.--||.|+|.+++.|.+..+.++|.++.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 0148999999999999999999999875
No 211
>KOG4410|consensus
Probab=76.11 E-value=20 Score=29.24 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=38.5
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCH-------HHHHHHHHHcC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDV-------ENLRQALLKDG 220 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~-------~~a~~Al~~l~ 220 (227)
....|+++|||-+. --.||+....+.+ .-.++.+ ..+.|-||++|.+. ++..+++.++|
T Consensus 329 ~~~di~~~nl~rd~--rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDI--RVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cccceeeccCcccc--chHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 34569999997655 4577887777766 2345555 33467899999763 44555555544
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.67 E-value=9 Score=24.30 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=29.0
Q ss_pred ChhhHHhhhccc-c----ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 170 SMNDHGLMVTEV-T----TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 170 ~~~~l~~~f~~~-g----~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+..+|..++... | .|-.|.|..+ |+||+-.. +.|..++++|++..+.||
T Consensus 14 ~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk 67 (74)
T PF03880_consen 14 TPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGK 67 (74)
T ss_dssp -HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS-
T ss_pred CHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCe
Confidence 455555554433 2 5556666554 79999876 589999999999999886
No 213
>KOG4574|consensus
Probab=75.24 E-value=1.7 Score=40.36 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=59.9
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCcee--CCeEeEEEec
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV--DGLQVRLDIA 89 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~--~g~~l~v~~~ 89 (227)
.+.++.|.+-..+...|..+|+.| .+..++..++ -..|.|.|.+.+.|..|+. ++| +++ -|-+.+|-++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~g-kevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQG-KEVSVTGAPSRVSFA 371 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcC-CcccccCCceeEEec
Confidence 344556666778888899999999 9999999887 4589999999999999998 888 654 6778888887
Q ss_pred CCCCC
Q psy1680 90 DGKRN 94 (227)
Q Consensus 90 ~~~~~ 94 (227)
+.-..
T Consensus 372 k~~~~ 376 (1007)
T KOG4574|consen 372 KTLPM 376 (1007)
T ss_pred ccccc
Confidence 75443
No 214
>KOG2135|consensus
Probab=74.93 E-value=1.3 Score=38.31 Aligned_cols=64 Identities=6% Similarity=-0.012 Sum_probs=44.4
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..|-+.-.|+-.. +.++|...|..||.|..|.+-... -.|.|+|.+..+|-+|.. ..+..|++|
T Consensus 373 s~l~lek~~~gln-t~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr 436 (526)
T KOG2135|consen 373 SPLALEKSPFGLN-TIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNR 436 (526)
T ss_pred chhhhhccCCCCc-hHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCc
Confidence 3444555554454 467899999999999999875442 369999999999966543 334555544
No 215
>KOG4410|consensus
Probab=74.25 E-value=7.2 Score=31.70 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=37.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCH
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDV 64 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~ 64 (227)
.....-|+++|||.++.-.||+..+.+. .-..+.|.- ..|-||+.|.+.
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 3444679999999999999999988877 345555532 267899999864
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.07 E-value=18 Score=22.60 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=36.4
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
..+-++++..+..|+ -..| ..|+ .| =||.|.+..+|+++....+|..+-
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecC-----CE-EEEEECChHHHHHHHHhcCCCEEE
Confidence 335688999999887 2223 3343 23 389999999999999999998764
No 217
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.15 E-value=4.2 Score=28.55 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=30.2
Q ss_pred cceeccCCCCC-------CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHH-HHHHHHHH
Q psy1680 157 GGFRNNNGPNR-------SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVE-NLRQALLK 218 (227)
Q Consensus 157 ~l~v~nl~~~~-------~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~-~a~~Al~~ 218 (227)
++.|.|++... -.+-+.|.+.|+.|..++ ++.+.++ ..+.|++.|+|...- --..|+..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 45667775322 124477888899898775 5555554 367899999997643 34444443
No 218
>KOG2295|consensus
Probab=70.45 E-value=0.49 Score=41.62 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=53.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
..+.+||+|++++++-++|..+|..+ .+.++.+...-.......+.+|.|+---....|+. ||+ ..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~-irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG-IRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh-ccccccc
Confidence 45789999999999999999999999 77777665443334456788999987666666776 777 5554443
No 219
>KOG2891|consensus
Probab=62.26 E-value=4.8 Score=32.57 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=45.9
Q ss_pred CCCcceeccCCCC----------CCCChhhHHhhhccccceEEEEEee-----cCCCCcc-----cceEE---------E
Q psy1680 154 EGPGGFRNNNGPN----------RSNSMNDHGLMVTEVTTLVSVRLVK-----DKETDRF-----KGFCY---------V 204 (227)
Q Consensus 154 ~~~~l~v~nl~~~----------~~~~~~~l~~~f~~~g~i~~v~i~~-----d~~t~~~-----~g~af---------V 204 (227)
.+.||++..+|-. -.-+++-|+..|+.||.|..|.|+. ...+|+. .||+| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3457787777621 1125678999999999999887763 2344544 34433 4
Q ss_pred EEcCHHHHHHHHHHcCCccc
Q psy1680 205 EFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 205 ~F~~~~~a~~Al~~l~g~~i 224 (227)
.|...-.-..|+.+|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 55555556678888887765
No 220
>KOG2318|consensus
Probab=56.81 E-value=40 Score=30.36 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=58.4
Q ss_pred CCCCCCceEEEcCCCCC-CCHHHHHhcccCC-C----eEEEEEeecC----------CCCC-------------------
Q psy1680 8 LPTEPPYTAFVGNLPNG-ITQGDVERFFPEQ-K----LVSVRLVKDK----------ETDR------------------- 52 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~-~----i~~v~i~~~~----------~~~~------------------- 52 (227)
....++++|-|-||.|. +.-++|..+|..| + |..|.|.... ..|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567899999999987 7778999999887 3 6666654211 1111
Q ss_pred ------------------eecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 53 ------------------FKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 53 ------------------~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
.-=||.|+|.+...|...-+ |+| +.|......+.+
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG-~EfEsS~~~~DL 302 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDG-IEFESSANKLDL 302 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCc-ceeccccceeee
Confidence 11389999999999999999 999 999766544443
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=53.27 E-value=14 Score=26.74 Aligned_cols=109 Identities=13% Similarity=-0.020 Sum_probs=68.6
Q ss_pred CCCHHHHHhcccCC-Ce-EEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecCCCCCCCCCCCC
Q psy1680 24 GITQGDVERFFPEQ-KL-VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFN 101 (227)
Q Consensus 24 ~~t~~~l~~~f~~~-~i-~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~ 101 (227)
..+-..|.+.+... .. -.+.+..- ..++..+.|.+.+++.+++.... ..+++..+.++...+..........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p-~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGP-WNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEeccc-ccccccchhhhhhccccccccccee
Confidence 35566677666554 32 23333221 14799999999999999988666 7788888888777643321110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCChhhHHhhhccc
Q psy1680 102 NKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEV 181 (227)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~ 181 (227)
...-=|-|.+||..+ .+++-++.+-+.+
T Consensus 102 ---------------------------------------------------~~~vWVri~glP~~~-~~~~~~~~i~~~i 129 (153)
T PF14111_consen 102 ---------------------------------------------------HIPVWVRIYGLPLHL-WSEEILKAIGSKI 129 (153)
T ss_pred ---------------------------------------------------ccchhhhhccCCHHH-hhhHHHHHHHHhc
Confidence 011135677887544 3678889999999
Q ss_pred cceEEEEEe
Q psy1680 182 TTLVSVRLV 190 (227)
Q Consensus 182 g~i~~v~i~ 190 (227)
|.+..+...
T Consensus 130 G~~i~vD~~ 138 (153)
T PF14111_consen 130 GEPIEVDEN 138 (153)
T ss_pred CCeEEEEcC
Confidence 988888543
No 222
>KOG4483|consensus
Probab=52.05 E-value=41 Score=28.92 Aligned_cols=56 Identities=13% Similarity=-0.050 Sum_probs=43.1
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHH
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 218 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~ 218 (227)
...+|=|.++|.... .+||...|+.|+ .=-.|+|+-|. .||..|.+..-|..||-.
T Consensus 390 lpHVlEIydfp~efk--teDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFK--TEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhc--cHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 346788999986554 367878888886 44578888874 599999999999998865
No 223
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=50.36 E-value=12 Score=32.05 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=47.3
Q ss_pred CcceeccCCCCCC------CChhhHHhhhcc--ccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHH
Q psy1680 156 PGGFRNNNGPNRS------NSMNDHGLMVTE--VTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 217 (227)
Q Consensus 156 ~~l~v~nl~~~~~------~~~~~l~~~f~~--~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~ 217 (227)
+.+|+..++.... .+.+++..+|.+ .+.+..++..++....+++|..|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4566666653221 234689999999 6688888888887667889999999999999999873
No 224
>KOG2295|consensus
Probab=50.16 E-value=3.7 Score=36.34 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=50.7
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
.++|+.|++++. +..+|..+|..+..+..+-+-.+....+..-+++|+|...-....|+.+||+.-+
T Consensus 232 ~sll~rni~Pni--s~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 232 CSLLVRNILPNI--SVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHhccCCcc--cHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 579999998776 5788999999887666665544433334456789999988888888888888765
No 225
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=48.45 E-value=60 Score=19.62 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=30.5
Q ss_pred hhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 171 MNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 171 ~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
..++.++|...| .|.++...... . ++.-.+.+.+.+.|.++|+..
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~ 60 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEA 60 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHC
Confidence 466778888877 78888764432 2 466666777777777776654
No 226
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=47.95 E-value=37 Score=22.30 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=19.8
Q ss_pred ceEEEEEeecCCCCcccceEEEEEcC
Q psy1680 183 TLVSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 183 ~i~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
.|++|+|.+-...++-+++|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36778877766668888999998876
No 227
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.37 E-value=64 Score=21.20 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=38.4
Q ss_pred eeccCCCCCCCChhhHHhhhcc-cc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 159 FRNNNGPNRSNSMNDHGLMVTE-VT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 159 ~v~nl~~~~~~~~~~l~~~f~~-~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
|...+...+ +..+|++.++. |+ .|.+|..+.-+. ..--|+|++...++|......++
T Consensus 24 y~F~V~~~a--nK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 24 LTFIVDRRA--TKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred EEEEECCCC--CHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhhc
Confidence 555553344 67778777776 45 777887655541 23459999999999888776654
No 228
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=46.50 E-value=36 Score=21.31 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecCCC
Q psy1680 29 DVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGK 92 (227)
Q Consensus 29 ~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~~~ 92 (227)
+|.+-|... ++..+.-+..+.++.....-||+.....+...+ ++= ..+.+..+.|+....+
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~I-k~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKI-KTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eeh-HhhCCeEEEEecCCCC
Confidence 455555544 888888888877777788899988865542222 444 5677788888876543
No 229
>KOG1295|consensus
Probab=43.89 E-value=33 Score=29.19 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=44.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-C-eEEEEEeecCCCC--CeecEEEEEeCCHHHHHHHHH-hCC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-K-LVSVRLVKDKETD--RFKGFCYVEFVDVENLRQALL-KDG 75 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~-i~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~al~-~~~ 75 (227)
...+|.|.+||+..++.+|.+-...+ . +..........+- .-.+.++|.|...+++..-.. .+|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g 74 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDG 74 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCc
Confidence 34678899999999999998887777 3 3333332111111 114689999999999777776 888
No 230
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=43.48 E-value=91 Score=20.64 Aligned_cols=46 Identities=17% Similarity=0.064 Sum_probs=33.2
Q ss_pred hhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 171 MNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 171 ~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
.+.++++++..| .++++.+... .-.....+++.+.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHHH
Confidence 466777888877 8888988764 335677888888888877665443
No 231
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=42.98 E-value=24 Score=22.21 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=21.1
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 200 GFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 200 g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
.+.+|.|.+..+|.+|-+.|...-|.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36899999999999998888765543
No 232
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=41.40 E-value=2.9e+02 Score=25.55 Aligned_cols=60 Identities=7% Similarity=0.140 Sum_probs=43.2
Q ss_pred CCCCHHHHHhcccCC-Ce-----EEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCCC
Q psy1680 23 NGITQGDVERFFPEQ-KL-----VSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGK 92 (227)
Q Consensus 23 ~~~t~~~l~~~f~~~-~i-----~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~~ 92 (227)
..++..+|..++..- .| =.|.|. ..|.||+... ..+...+. +.+ ..+.|+.|.|..+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTR-TRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhcc-ccccCCceEEEECCCC
Confidence 457777777776544 33 344554 3489999986 44777787 888 9999999999987533
No 233
>KOG4213|consensus
Probab=39.79 E-value=53 Score=24.99 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=33.8
Q ss_pred ChhhHHhhhccccceEEEEEeecCCC-CcccceEEEEEcCHHHHHHHHHHc
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKET-DRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t-~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
..++|.+.-+ |.+..+.+.+-.+. ...+|-.||.|.+.++|.+.++..
T Consensus 122 ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 122 QLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred HHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 4566666555 77787776553221 146899999999999999977654
No 234
>KOG4019|consensus
Probab=39.75 E-value=19 Score=27.37 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=42.1
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEE---EEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSV---RLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v---~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.++.+-++...+.++..+.+.+-+-|-.+..+ ++++ +.+...|-|.+++.|..|..++++..+.|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~ 78 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNG 78 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCC
Confidence 35677777655554555544443334333322 2322 34567789999999999999999998876
No 235
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=39.71 E-value=81 Score=18.63 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=36.8
Q ss_pred ceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCH----HHHHHHHHHc
Q psy1680 158 GFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDV----ENLRQALLKD 219 (227)
Q Consensus 158 l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~----~~a~~Al~~l 219 (227)
+.|.+| ........+...+.....|.++.+-.. .+.+-|.|... ++..++++.+
T Consensus 2 ~~v~~m--~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 2 FKVPGM--TCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEST--TSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred EEECCc--ccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 456666 444345778888888878998888554 35788888744 5666677664
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=39.16 E-value=60 Score=20.00 Aligned_cols=22 Identities=0% Similarity=0.012 Sum_probs=17.6
Q ss_pred hhhHHhhhccccceEEEEEeec
Q psy1680 171 MNDHGLMVTEVTTLVSVRLVKD 192 (227)
Q Consensus 171 ~~~l~~~f~~~g~i~~v~i~~d 192 (227)
..+|+++|+..|.|.-+.+...
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEccc
Confidence 4789999999999987766543
No 237
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=38.48 E-value=58 Score=21.92 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=17.6
Q ss_pred ceEEEEEeecCCCCcccceEEEEEcC
Q psy1680 183 TLVSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 183 ~i~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
.|++|+|.+-..-|+-+++|-|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 36677666554446778888888776
No 238
>PRK11901 hypothetical protein; Reviewed
Probab=37.29 E-value=56 Score=27.31 Aligned_cols=50 Identities=8% Similarity=0.118 Sum_probs=33.7
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEE--EEcCHHHHHHHHHHcCC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYV--EFVDVENLRQALLKDGR 221 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV--~F~~~~~a~~Al~~l~g 221 (227)
.++.|..|-..++ +..+.+.+-...|+.+ |..| .|.+.++|..|+..|--
T Consensus 255 ~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 255 RSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 4677887777665 4445555444445665 4433 79999999999998753
No 239
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=37.11 E-value=46 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=21.6
Q ss_pred CcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 196 DRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 196 ~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
..+.|...+-|.+.++|++..+..+|..+
T Consensus 111 ~~pMg~~~~aF~~~~~A~~F~~~~GG~v~ 139 (149)
T PF05573_consen 111 RGPMGPDLIAFASKEDAEAFAKEHGGKVL 139 (149)
T ss_dssp S-TTS--EEEES-HHHHHHHHHHTEEEEE
T ss_pred CCCCCCcccccCCHHHHHHHHHHcCCEEe
Confidence 44578999999999999999999987765
No 240
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.62 E-value=1.2e+02 Score=19.49 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=37.9
Q ss_pred ceeccCCCCCCCChhhHHhhhcc-cc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 158 GFRNNNGPNRSNSMNDHGLMVTE-VT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 158 l~v~nl~~~~~~~~~~l~~~f~~-~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
-|+..+.... +..+|+..++. |+ .|.+|..+.-+. ..--|||++..-+.|...-.+++
T Consensus 16 ~y~F~V~~~a--nK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~g 75 (77)
T TIGR03636 16 KLTFIVDRKA--TKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRLG 75 (77)
T ss_pred EEEEEECCCC--CHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhhc
Confidence 3555664344 67788877776 45 677776555431 23459999998888887666554
No 241
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.81 E-value=88 Score=20.30 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.0
Q ss_pred ccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 198 FKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 198 ~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
.+||-|||=.+.++...|++.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999999877653
No 242
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=31.47 E-value=1.1e+02 Score=17.60 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=29.1
Q ss_pred hhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHH
Q psy1680 171 MNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216 (227)
Q Consensus 171 ~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al 216 (227)
..++.+.+...| .|.++.+.... ...+...+.+++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 355667777776 77777765542 23566777888888887765
No 243
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=31.29 E-value=1.3e+02 Score=22.07 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=26.7
Q ss_pred eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 184 i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
|.+|.++.. ..||.||+-...+++..++..+.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 566666554 4799999999889999999887653
No 244
>KOG4019|consensus
Probab=30.50 E-value=37 Score=25.84 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=50.6
Q ss_pred ceEEEcCCCCCC--C---HHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe-EeE
Q psy1680 14 YTAFVGNLPNGI--T---QGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL-QVR 85 (227)
Q Consensus 14 ~~l~V~nLp~~~--t---~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~-~l~ 85 (227)
..+++-+|+..+ + .....++|.+| +.....+++. .+..-|-|.+.+.|..|.. ++. ..|.|. .+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~-~~f~~~~~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHS-TSFNGKNELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhh-cccCCCceEE
Confidence 446666666432 1 22355677777 7666666543 5567788999999999987 898 999998 777
Q ss_pred EEecCCCC
Q psy1680 86 LDIADGKR 93 (227)
Q Consensus 86 v~~~~~~~ 93 (227)
.-++.+..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 77776543
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=30.22 E-value=1.5e+02 Score=21.70 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=34.9
Q ss_pred ceeccCCCCCCCChhhHHhhhcc-cc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 158 GFRNNNGPNRSNSMNDHGLMVTE-VT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 158 l~v~nl~~~~~~~~~~l~~~f~~-~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
-|+..+ +...+..+|++.++. |+ .|..|..+.-+. | .--|||.+....+|......+
T Consensus 84 ~yvF~V--d~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 84 TLVFIV--DQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred EEEEEE--cCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHhh
Confidence 355555 334467888877776 45 667776555433 2 235999998777765544444
No 246
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=29.59 E-value=65 Score=20.30 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecCC
Q psy1680 29 DVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 29 ~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~~ 91 (227)
+|.+-|... ++..+.-+..+.++.+...-+|+.....+.... ++= ..+++.++.|+....
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I--l~i-k~Lg~~~V~VEr~~k 64 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI--LNI-KTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce--Eee-hhhCCeeEEEecCcc
Confidence 455556655 888888888777777777888888765433322 444 567888888887653
No 247
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=29.05 E-value=1e+02 Score=25.36 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=37.3
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCC-------CcccceEEEEEcCHHHHH
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKET-------DRFKGFCYVEFVDVENLR 213 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t-------~~~~g~afV~F~~~~~a~ 213 (227)
+.|...|+- -+.+.-.+...|-+||.|++|+++.+.++ .+..-...+.|-+.+.+-
T Consensus 16 RSLLfeNv~--~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 16 RSLLFENVN--NSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred HHHHHhhcc--ccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 457778883 33234556667889999999999987611 122345678888877653
No 248
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=28.85 E-value=1.5e+02 Score=18.47 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=30.0
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceE-EEEEc-CHHHHHHHHHHcCC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFC-YVEFV-DVENLRQALLKDGR 221 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~a-fV~F~-~~~~a~~Al~~l~g 221 (227)
..-++.+.|+.+| |.-.+|-..|..+...-|- ||+++ ..++..+|++.+..
T Consensus 13 ~L~~vL~~f~~~~-iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFG-VNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCC-CcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3466777888887 3334444444434443344 67877 44556777777654
No 249
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=28.03 E-value=1.3e+02 Score=26.91 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=33.4
Q ss_pred hHHhhhc----cccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 173 DHGLMVT----EVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 173 ~l~~~f~----~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
+|..+|- .+|.|++++|...+. -..+...++.|.+.++|..|+..+
T Consensus 205 dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 205 DLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred chHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHH
Confidence 4555444 588999888776654 233456788999999999988775
No 250
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=27.49 E-value=1.8e+02 Score=19.14 Aligned_cols=61 Identities=7% Similarity=-0.090 Sum_probs=36.5
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCH--HHHHHHHHHcCC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDV--ENLRQALLKDGR 221 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~--~~a~~Al~~l~g 221 (227)
.+|.-.+|.. .=.|+.++...+.-.+|.....+.++...+.++|-|.-. ++..+-++.|+.
T Consensus 11 ~~~~v~~PE~----pGal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~ 73 (91)
T PF00585_consen 11 ALFAVEFPER----PGALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKA 73 (91)
T ss_dssp EEEEEE--BS----TTHCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTS
T ss_pred EEEEEECCCC----ccHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHH
Confidence 4566666532 244777777777666677777777788889999988654 444555555543
No 251
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=27.11 E-value=46 Score=26.95 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=26.2
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeec
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKD 47 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~ 47 (227)
....|+|||++++-.-|..++..- .+....++.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 455699999999999999888776 6656566554
No 252
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.28 E-value=96 Score=25.63 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=25.7
Q ss_pred EEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCCCCCC
Q psy1680 57 CYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGKRND 95 (227)
Q Consensus 57 afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~~~~~ 95 (227)
|||.|.+..+|+.|++ +.. .. .+.+.+..+-++.+-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CC--CCCceEeeCCCcccc
Confidence 7999999999999998 443 22 245577777655543
No 253
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=24.39 E-value=41 Score=28.28 Aligned_cols=47 Identities=13% Similarity=-0.004 Sum_probs=35.8
Q ss_pred hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 172 NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
-.+.+...+.|.|..-.+.+-.+ .|.+||-....+++.++++.|.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtFN----mGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTFN----MGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHhc----CccceEEEEcHHHHHHHHHHHHhc
Confidence 44666677777666555555443 799999999999999999999864
No 254
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.30 E-value=2.2e+02 Score=19.57 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=27.8
Q ss_pred hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHH
Q psy1680 172 NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 217 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~ 217 (227)
.+|..+.+.+| |.+=.|..|..++ -=||++++.+.+...++|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHHh
Confidence 34666777777 6666666665332 3489999996666555543
No 255
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=24.28 E-value=2.8e+02 Score=22.23 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=35.5
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceE----EEEEeecCCCCcccceEEEEEc
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLV----SVRLVKDKETDRFKGFCYVEFV 207 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~----~v~i~~d~~t~~~~g~afV~F~ 207 (227)
.+--|.|.-|.++.+-|-.+++..|.+.|.-. +|.++-++. |.++|.
T Consensus 93 ~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~k-------Gvi~~~ 143 (241)
T COG0217 93 GGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRK-------GVIVVE 143 (241)
T ss_pred CceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEecc-------EEEEEC
Confidence 34568899998888888999999999987332 677877753 556665
No 256
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=23.90 E-value=1.6e+02 Score=24.30 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecC-------CCCCeecEEEEEeCCHHHHHHHHH-----hCC
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDK-------ETDRFKGFCYVEFVDVENLRQALL-----KDG 75 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~-------~~~~~~g~afv~f~~~~~a~~al~-----~~~ 75 (227)
++=.++.|...|+..+++-..+-..|-+| +|+.|+++.+. ...+......+.|-+.+.|...-. +.-
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34456788899999999988888999999 99999999865 112334567778887776544332 111
Q ss_pred -CceeCCeEeEEEecC
Q psy1680 76 -RITVDGLQVRLDIAD 90 (227)
Q Consensus 76 -~~~~~g~~l~v~~~~ 90 (227)
...+....|.+.+..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 024556666666654
No 257
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=23.85 E-value=31 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCCceEEEcCCCCCCCHHH
Q psy1680 11 EPPYTAFVGNLPNGITQGD 29 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~ 29 (227)
..++++|||+||..|-++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HcCceEEECCCChHHHHcC
Confidence 4578999999998876654
No 258
>KOG0156|consensus
Probab=23.02 E-value=1.5e+02 Score=26.49 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=39.7
Q ss_pred eeccCCCCCCC-ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 159 FRNNNGPNRSN-SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 159 ~v~nl~~~~~~-~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+||||+.-... ...-+.++-.+||.|-.+++-.. -.|--.+.+.|+.|+... +..+.+|
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~-d~~fa~R 95 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQ-DLEFADR 95 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhC-CccccCC
Confidence 78888633322 33556666668999998887443 347777888888888775 4555554
No 259
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=22.81 E-value=1.8e+02 Score=23.21 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=34.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceE----EEEEeecCCCCcccceEEEEEc
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLV----SVRLVKDKETDRFKGFCYVEFV 207 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~----~v~i~~d~~t~~~~g~afV~F~ 207 (227)
|.+--|.|--|.++..-|..+|+.+|+++|... ++.++-++ .|.|.|.
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 344567888888787778899999999988432 46666664 4777774
No 260
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=22.23 E-value=1.9e+02 Score=25.04 Aligned_cols=46 Identities=13% Similarity=0.000 Sum_probs=32.7
Q ss_pred hHHhhhc----cccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 173 DHGLMVT----EVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 173 ~l~~~f~----~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
+|..+|- .+|.|+++.|..-+. -..+...++.|.+.++|.+|+..+
T Consensus 148 dl~~l~~Gs~GtlGiit~~~lkl~p~-p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 148 DLTGLFVGSEGTLGIVTEATLKLLPK-PENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred ChhhhcccCCccceEEEEEEEEeecC-CCccEEEEEECCCHHHHHHHHHHH
Confidence 4655553 478899887766654 334556788999999999988554
No 261
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=21.36 E-value=39 Score=22.76 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=23.2
Q ss_pred eccCCCCCC--CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCH
Q psy1680 160 RNNNGPNRS--NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDV 209 (227)
Q Consensus 160 v~nl~~~~~--~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~ 209 (227)
+..||+.++ ..+|.|.++...|+ |++.|.+ |||.|+..
T Consensus 26 l~~LP~la~S~~~KD~I~q~m~~F~---------dp~~G~p---AF~s~~QQ 65 (120)
T PRK15321 26 LLALPESASSETLKDSIYQEMNAFK---------DPNSGDS---AFVSFEQQ 65 (120)
T ss_pred HHhCCcccCcHHHHHHHHHHHHHhC---------CCCCCCc---ccccHHHH
Confidence 456665433 22356666666665 6665665 89999764
No 262
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=20.41 E-value=1.6e+02 Score=17.95 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=14.8
Q ss_pred EEEEeecCCCCcccceEEEEEcC
Q psy1680 186 SVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 186 ~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
.++|+.++. ..+.|++.+.|++
T Consensus 19 ~arllLnrR-ps~~G~~WiKyED 40 (60)
T PF06613_consen 19 PARLLLNRR-PSSEGLAWIKYED 40 (60)
T ss_dssp EEEE-TTB---SSTTEEEEEETT
T ss_pred hhhhhhccC-CCcCCeEEEEEcc
Confidence 566666632 5678999999987
No 263
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=20.08 E-value=1.1e+02 Score=22.01 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.3
Q ss_pred ccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 198 FKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 198 ~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
.+||-||+....++...++..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 6899999999888888888877664
Done!