Query psy1680
Match_columns 227
No_of_seqs 138 out of 1721
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 22:26:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 8.4E-36 2.9E-40 229.3 17.8 168 5-227 5-173 (196)
2 4f02_A Polyadenylate-binding p 100.0 3.3E-36 1.1E-40 235.1 15.6 160 8-227 10-171 (213)
3 1fxl_A Paraneoplastic encephal 100.0 2.2E-35 7.6E-40 221.1 19.4 156 12-227 1-158 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 3.3E-35 1.1E-39 220.5 19.0 155 12-226 2-158 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 5.6E-35 1.9E-39 218.7 17.2 155 14-227 1-157 (166)
6 2qfj_A FBP-interacting repress 100.0 8.9E-34 3E-38 221.2 17.4 168 11-227 26-195 (216)
7 2cjk_A Nuclear polyadenylated 100.0 6.3E-35 2.2E-39 218.9 9.6 154 12-227 2-156 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 2.5E-33 8.6E-38 211.5 17.1 154 12-225 2-162 (175)
9 3tyt_A Heterogeneous nuclear r 100.0 8.2E-33 2.8E-37 214.4 16.7 187 11-227 2-193 (205)
10 2g4b_A Splicing factor U2AF 65 100.0 8.3E-33 2.8E-37 208.3 15.1 150 12-227 3-164 (172)
11 2yh0_A Splicing factor U2AF 65 100.0 2.2E-33 7.4E-38 216.1 11.3 177 11-227 2-184 (198)
12 1fje_B Nucleolin RBD12, protei 100.0 3.3E-33 1.1E-37 211.2 9.5 156 8-227 8-164 (175)
13 3smz_A Protein raver-1, ribonu 100.0 1.2E-31 4.2E-36 217.7 18.1 161 10-227 92-254 (284)
14 3pgw_A U1-A; protein-RNA compl 100.0 4.7E-30 1.6E-34 208.1 24.8 208 8-227 4-273 (282)
15 2adc_A Polypyrimidine tract-bi 100.0 2.3E-30 7.8E-35 204.1 17.7 184 9-227 30-218 (229)
16 1qm9_A Polypyrimidine tract-bi 100.0 1.9E-30 6.6E-35 199.9 16.1 181 12-227 2-187 (198)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-30 4.2E-35 212.6 14.2 163 11-227 115-281 (292)
18 3sde_A Paraspeckle component 1 100.0 5.5E-30 1.9E-34 205.7 17.0 139 10-221 19-159 (261)
19 3smz_A Protein raver-1, ribonu 100.0 1.1E-29 3.7E-34 206.2 17.9 145 11-227 20-165 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-29 4.5E-34 206.4 14.0 149 9-227 37-187 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 5.9E-23 2E-27 152.6 12.6 138 41-227 2-140 (158)
22 4f25_A Polyadenylate-binding p 99.9 1E-21 3.4E-26 138.3 10.3 80 12-94 4-85 (115)
23 4fxv_A ELAV-like protein 1; RN 99.9 2.9E-21 9.8E-26 132.3 10.7 80 11-91 17-98 (99)
24 2i2y_A Fusion protein consists 99.8 4.7E-21 1.6E-25 141.1 9.8 127 51-227 10-138 (150)
25 4fxv_A ELAV-like protein 1; RN 99.8 5.9E-21 2E-25 130.7 7.9 72 154-227 18-89 (99)
26 2dgo_A Cytotoxic granule-assoc 99.8 1.2E-19 4.2E-24 127.5 14.9 90 6-96 8-99 (115)
27 3s8s_A Histone-lysine N-methyl 99.8 4.9E-20 1.7E-24 128.5 11.7 83 10-93 3-87 (110)
28 2cq0_A Eukaryotic translation 99.8 2.1E-19 7E-24 123.9 14.0 88 7-95 9-98 (103)
29 3s8s_A Histone-lysine N-methyl 99.8 1.5E-20 5.2E-25 131.1 8.4 73 153-227 4-76 (110)
30 2dng_A Eukaryotic translation 99.8 2.4E-19 8.2E-24 123.6 13.8 90 5-95 7-96 (103)
31 2dnz_A Probable RNA-binding pr 99.8 1.5E-19 5.1E-24 122.7 12.2 85 10-95 2-88 (95)
32 2dgs_A DAZ-associated protein 99.8 2.3E-19 7.7E-24 122.8 12.8 88 8-96 5-93 (99)
33 3md1_A Nuclear and cytoplasmic 99.8 1.8E-19 6.3E-24 119.1 11.5 80 13-93 1-82 (83)
34 3bs9_A Nucleolysin TIA-1 isofo 99.8 1E-19 3.5E-24 121.4 10.2 83 9-92 2-86 (87)
35 1x5u_A Splicing factor 3B subu 99.8 1.8E-19 6.1E-24 124.6 11.8 89 7-96 9-99 (105)
36 2lxi_A RNA-binding protein 10; 99.8 1.4E-20 4.7E-25 126.9 5.8 81 13-94 1-85 (91)
37 1x4h_A RNA-binding protein 28; 99.8 1.8E-19 6.3E-24 125.8 11.8 90 5-95 7-104 (111)
38 2do0_A HnRNP M, heterogeneous 99.8 1.2E-18 4E-23 122.3 15.6 86 7-94 9-96 (114)
39 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.9E-19 6.5E-24 123.8 11.2 89 7-96 6-96 (102)
40 1wi8_A EIF-4B, eukaryotic tran 99.8 4.2E-19 1.4E-23 122.5 12.9 92 4-96 6-98 (104)
41 2lkz_A RNA-binding protein 5; 99.8 7.7E-20 2.6E-24 124.0 8.5 82 9-91 5-94 (95)
42 2do4_A Squamous cell carcinoma 99.8 4.8E-19 1.6E-23 121.4 12.6 85 8-94 12-98 (100)
43 2d9p_A Polyadenylate-binding p 99.8 7.3E-19 2.5E-23 121.1 13.4 89 5-96 7-97 (103)
44 1whw_A Hypothetical protein ri 99.8 3.5E-19 1.2E-23 121.8 11.6 86 9-95 4-91 (99)
45 2dnm_A SRP46 splicing factor; 99.8 1.7E-19 5.9E-24 124.2 10.1 88 6-94 6-95 (103)
46 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-19 7.2E-24 123.6 10.3 89 7-96 6-96 (102)
47 2cpz_A CUG triplet repeat RNA- 99.8 3E-19 1E-23 125.5 11.3 87 8-95 20-108 (115)
48 2cqd_A RNA-binding region cont 99.8 1.4E-18 4.7E-23 122.3 14.5 88 6-95 10-99 (116)
49 2la6_A RNA-binding protein FUS 99.8 4E-19 1.4E-23 121.6 11.4 86 4-90 4-99 (99)
50 1x5t_A Splicing factor 3B subu 99.8 2.8E-19 9.6E-24 121.6 10.5 84 11-95 3-89 (96)
51 2fy1_A RNA-binding motif prote 99.8 4.2E-19 1.5E-23 125.0 11.8 85 9-95 3-89 (116)
52 2cqc_A Arginine/serine-rich sp 99.8 4E-19 1.4E-23 120.5 11.2 84 7-91 9-94 (95)
53 2jrs_A RNA-binding protein 39; 99.8 3.8E-19 1.3E-23 123.6 11.2 86 7-93 20-107 (108)
54 2cpe_A RNA-binding protein EWS 99.8 5.6E-19 1.9E-23 123.7 12.0 88 7-95 9-106 (113)
55 2e5h_A Zinc finger CCHC-type a 99.8 5.6E-19 1.9E-23 119.6 11.5 83 7-90 10-94 (94)
56 3s7r_A Heterogeneous nuclear r 99.8 5.5E-19 1.9E-23 117.9 11.1 81 8-89 6-87 (87)
57 1u6f_A Tcubp1, RNA-binding pro 99.8 6.5E-19 2.2E-23 127.9 12.3 86 9-95 38-125 (139)
58 2x1f_A MRNA 3'-END-processing 99.8 3.8E-19 1.3E-23 121.0 10.4 82 12-94 1-84 (96)
59 3ex7_B RNA-binding protein 8A; 99.8 1.9E-19 6.6E-24 128.6 9.2 89 6-95 15-105 (126)
60 1wez_A HnRNP H', FTP-3, hetero 99.8 7.7E-19 2.6E-23 120.8 11.8 85 7-94 9-94 (102)
61 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.7E-19 1.3E-23 118.2 9.9 81 9-90 3-85 (85)
62 2lkz_A RNA-binding protein 5; 99.8 2.4E-20 8.1E-25 126.5 4.0 71 155-227 9-85 (95)
63 2lxi_A RNA-binding protein 10; 99.8 1.5E-20 5E-25 126.8 2.9 71 155-227 1-73 (91)
64 2cph_A RNA binding motif prote 99.8 8.7E-19 3E-23 121.5 11.8 89 6-95 8-100 (107)
65 2e5h_A Zinc finger CCHC-type a 99.8 4.3E-19 1.5E-23 120.2 10.0 73 153-227 14-86 (94)
66 1p27_B RNA-binding protein 8A; 99.8 3.5E-19 1.2E-23 123.3 9.8 84 9-93 19-104 (106)
67 1oo0_B CG8781-PA, drosophila Y 99.8 3.7E-19 1.3E-23 124.1 9.6 88 6-94 19-108 (110)
68 2cpf_A RNA binding motif prote 99.8 6.2E-19 2.1E-23 120.3 10.4 84 11-95 3-91 (98)
69 1h2v_Z 20 kDa nuclear CAP bind 99.8 1E-18 3.4E-23 129.4 12.2 87 9-96 35-123 (156)
70 2dhg_A TRNA selenocysteine ass 99.8 6.7E-19 2.3E-23 121.5 10.4 85 9-95 5-93 (104)
71 2dh8_A DAZ-associated protein 99.8 6.4E-19 2.2E-23 121.8 10.3 89 7-96 10-99 (105)
72 3ns6_A Eukaryotic translation 99.8 9.1E-20 3.1E-24 125.1 5.8 74 154-227 5-83 (100)
73 2dgp_A Bruno-like 4, RNA bindi 99.8 6.2E-19 2.1E-23 122.1 10.0 88 7-95 7-99 (106)
74 2dnh_A Bruno-like 5, RNA bindi 99.8 1.7E-18 5.8E-23 119.6 12.1 85 9-95 11-100 (105)
75 2fc8_A NCL protein; structure 99.8 2.8E-18 9.4E-23 117.9 13.1 86 7-95 9-95 (102)
76 2cqc_A Arginine/serine-rich sp 99.8 5.1E-19 1.7E-23 120.0 9.0 73 153-227 13-85 (95)
77 2div_A TRNA selenocysteine ass 99.8 7.9E-19 2.7E-23 120.0 10.0 84 9-93 5-95 (99)
78 3p5t_L Cleavage and polyadenyl 99.8 1.4E-19 4.8E-24 121.7 5.8 69 157-227 3-73 (90)
79 2do4_A Squamous cell carcinoma 99.8 1.1E-18 3.8E-23 119.5 10.4 72 153-227 15-86 (100)
80 2cpy_A RNA-binding protein 12; 99.8 1.3E-19 4.6E-24 127.2 5.9 83 9-93 11-95 (114)
81 1x5u_A Splicing factor 3B subu 99.8 8.5E-19 2.9E-23 121.2 9.9 73 153-227 13-85 (105)
82 2cq0_A Eukaryotic translation 99.8 7E-19 2.4E-23 121.2 9.4 73 153-227 13-85 (103)
83 2cq3_A RNA-binding protein 9; 99.8 4.8E-18 1.7E-22 116.9 13.6 87 6-95 8-96 (103)
84 2cqp_A RNA-binding protein 12; 99.8 8.9E-19 3E-23 119.5 9.8 85 8-93 10-96 (98)
85 1x4b_A Heterogeneous nuclear r 99.8 5.8E-19 2E-23 124.3 9.1 85 11-96 25-110 (116)
86 2kxn_B Transformer-2 protein h 99.8 7.3E-19 2.5E-23 126.0 9.7 85 8-93 41-127 (129)
87 2kxn_B Transformer-2 protein h 99.8 1E-18 3.5E-23 125.3 10.4 74 152-227 43-116 (129)
88 2cqg_A TDP-43, TAR DNA-binding 99.8 4.4E-18 1.5E-22 117.1 13.1 87 7-95 9-96 (103)
89 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.7E-19 1.6E-23 117.7 7.9 73 153-227 5-77 (85)
90 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.2E-18 1.1E-22 117.8 12.3 87 6-95 8-96 (103)
91 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-18 4.2E-23 122.4 10.3 73 153-227 23-95 (115)
92 2krb_A Eukaryotic translation 99.8 2.8E-19 9.7E-24 117.8 6.6 70 156-227 2-75 (81)
93 3ns6_A Eukaryotic translation 99.8 1.1E-19 3.8E-24 124.6 4.8 82 10-92 3-93 (100)
94 3ulh_A THO complex subunit 4; 99.8 2.1E-18 7.2E-23 119.6 11.1 82 7-90 23-106 (107)
95 1s79_A Lupus LA protein; RRM, 99.8 6.7E-19 2.3E-23 121.2 8.5 71 153-227 9-79 (103)
96 2dgv_A HnRNP M, heterogeneous 99.8 2.1E-18 7E-23 116.3 10.6 85 8-95 3-89 (92)
97 2hvz_A Splicing factor, argini 99.8 7E-19 2.4E-23 120.8 8.4 75 14-94 1-77 (101)
98 1x4e_A RNA binding motif, sing 99.8 2.9E-19 9.9E-24 118.8 6.2 73 153-227 3-75 (85)
99 4a8x_A RNA-binding protein wit 99.8 1.5E-18 5.1E-23 115.9 9.7 82 11-93 2-86 (88)
100 2dnz_A Probable RNA-binding pr 99.8 9.8E-19 3.3E-23 118.6 8.9 73 153-227 3-75 (95)
101 2lea_A Serine/arginine-rich sp 99.8 2.1E-19 7.3E-24 129.8 5.8 73 153-227 45-117 (135)
102 2rs2_A Musashi-1, RNA-binding 99.8 2.2E-18 7.7E-23 119.9 10.8 85 9-94 21-106 (109)
103 2dgw_A Probable RNA-binding pr 99.8 4.3E-18 1.5E-22 114.5 11.8 83 9-93 6-88 (91)
104 1x5s_A Cold-inducible RNA-bind 99.8 9.1E-19 3.1E-23 120.4 8.6 73 153-227 10-82 (102)
105 1x4h_A RNA-binding protein 28; 99.8 1.8E-18 6.1E-23 120.7 10.1 73 153-227 13-91 (111)
106 2khc_A Testis-specific RNP-typ 99.8 1.5E-18 5.2E-23 122.4 9.8 81 9-90 36-118 (118)
107 2x1f_A MRNA 3'-END-processing 99.8 6.4E-19 2.2E-23 119.9 7.5 72 154-227 1-72 (96)
108 2div_A TRNA selenocysteine ass 99.8 8.4E-19 2.9E-23 119.9 8.1 73 153-227 7-80 (99)
109 1x4a_A Splicing factor, argini 99.8 5.2E-18 1.8E-22 118.0 12.3 85 7-95 16-102 (109)
110 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.2E-19 2.5E-23 117.3 7.5 72 154-227 5-76 (87)
111 2ywk_A Putative RNA-binding pr 99.8 1.7E-18 6E-23 117.4 9.6 83 7-91 10-94 (95)
112 3ucg_A Polyadenylate-binding p 99.8 2.1E-18 7.2E-23 115.5 9.8 81 12-93 5-86 (89)
113 2dnm_A SRP46 splicing factor; 99.8 9.3E-19 3.2E-23 120.6 8.2 73 153-227 11-83 (103)
114 2khc_A Testis-specific RNP-typ 99.8 2.8E-18 9.6E-23 121.1 10.8 74 152-227 37-110 (118)
115 2m2b_A RNA-binding protein 10; 99.8 5.8E-19 2E-23 127.0 7.3 85 8-94 18-110 (131)
116 2la6_A RNA-binding protein FUS 99.8 1.6E-18 5.3E-23 118.6 9.1 73 153-227 11-91 (99)
117 2dgs_A DAZ-associated protein 99.8 1.8E-18 6E-23 118.3 9.4 72 153-227 8-79 (99)
118 1x4c_A Splicing factor, argini 99.8 8.8E-18 3E-22 116.7 13.0 82 6-95 8-96 (108)
119 2dgo_A Cytotoxic granule-assoc 99.8 1.7E-18 5.8E-23 121.6 9.4 73 153-227 13-85 (115)
120 1x4e_A RNA binding motif, sing 99.8 6.8E-19 2.3E-23 117.0 6.8 80 10-90 2-83 (85)
121 1wg5_A Heterogeneous nuclear r 99.8 4.1E-18 1.4E-22 117.6 11.0 85 8-94 10-96 (104)
122 2cph_A RNA binding motif prote 99.8 2.7E-18 9.1E-23 119.0 10.0 73 153-227 13-87 (107)
123 1whw_A Hypothetical protein ri 99.8 1.1E-18 3.8E-23 119.3 8.0 73 153-227 6-78 (99)
124 1p1t_A Cleavage stimulation fa 99.8 5.7E-19 2E-23 121.8 6.5 85 9-94 4-90 (104)
125 3md1_A Nuclear and cytoplasmic 99.8 1.1E-18 3.7E-23 115.4 7.5 70 156-227 2-71 (83)
126 2ek1_A RNA-binding protein 12; 99.8 1.2E-18 4E-23 118.2 7.8 81 10-91 12-94 (95)
127 2jrs_A RNA-binding protein 39; 99.8 1.6E-18 5.6E-23 120.4 8.7 73 153-227 24-96 (108)
128 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8E-19 2.7E-23 120.7 6.9 73 153-227 10-82 (102)
129 1s79_A Lupus LA protein; RRM, 99.8 1.4E-18 4.9E-23 119.6 8.0 81 9-91 7-88 (103)
130 2cqd_A RNA-binding region cont 99.8 1.9E-18 6.4E-23 121.6 8.8 73 152-227 14-86 (116)
131 2dis_A Unnamed protein product 99.8 3.5E-18 1.2E-22 118.9 10.0 84 10-94 5-94 (109)
132 2dgx_A KIAA0430 protein; RRM d 99.8 4E-18 1.4E-22 115.9 10.0 82 9-94 5-92 (96)
133 2cpi_A CCR4-NOT transcription 99.8 8.1E-18 2.8E-22 117.5 11.8 87 7-94 9-103 (111)
134 2dh8_A DAZ-associated protein 99.8 2E-18 6.9E-23 119.3 8.6 73 152-227 13-85 (105)
135 1p27_B RNA-binding protein 8A; 99.8 2.2E-18 7.4E-23 119.3 8.7 73 153-227 21-93 (106)
136 2dnn_A RNA-binding protein 12; 99.8 2.9E-18 1E-22 119.1 9.3 82 10-93 13-94 (109)
137 3p5t_L Cleavage and polyadenyl 99.8 6.1E-19 2.1E-23 118.5 5.6 80 14-94 2-85 (90)
138 4f25_A Polyadenylate-binding p 99.8 1.3E-18 4.4E-23 122.3 7.5 69 155-227 5-73 (115)
139 2ywk_A Putative RNA-binding pr 99.8 1.4E-18 4.7E-23 117.9 7.3 72 153-227 14-85 (95)
140 2fc9_A NCL protein; structure 99.8 1.4E-17 4.7E-22 114.2 12.4 83 7-94 9-93 (101)
141 3s7r_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 115.6 7.5 72 153-227 9-80 (87)
142 2m2b_A RNA-binding protein 10; 99.8 1.8E-18 6.1E-23 124.4 8.1 72 153-227 21-98 (131)
143 2mss_A Protein (musashi1); RNA 99.8 9.5E-19 3.2E-23 113.5 6.1 74 15-89 1-75 (75)
144 1x5o_A RNA binding motif, sing 99.8 1.3E-17 4.5E-22 116.9 12.3 83 8-92 20-112 (114)
145 2d9p_A Polyadenylate-binding p 99.8 6.1E-18 2.1E-22 116.4 10.4 71 153-227 13-83 (103)
146 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-18 7.5E-23 119.3 8.1 73 153-227 11-86 (106)
147 2kt5_A RNA and export factor-b 99.8 9.8E-18 3.4E-22 119.3 11.7 85 9-95 31-117 (124)
148 1x4d_A Matrin 3; structural ge 99.8 5.4E-18 1.9E-22 116.1 9.9 80 9-94 11-94 (102)
149 2dgu_A Heterogeneous nuclear r 99.8 1.4E-17 4.9E-22 114.6 12.0 79 9-96 7-87 (103)
150 1wex_A Hypothetical protein (r 99.8 1.1E-17 3.7E-22 115.2 11.4 84 7-96 9-95 (104)
151 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.4E-18 1.9E-22 126.6 10.6 86 8-94 67-154 (165)
152 2dng_A Eukaryotic translation 99.8 3.6E-18 1.2E-22 117.6 8.9 71 153-227 13-83 (103)
153 2cpf_A RNA binding motif prote 99.8 1.8E-18 6E-23 118.1 7.2 73 153-227 3-78 (98)
154 2dnh_A Bruno-like 5, RNA bindi 99.8 6.9E-18 2.4E-22 116.5 10.2 71 153-226 13-83 (105)
155 2cqp_A RNA-binding protein 12; 99.7 1.3E-18 4.5E-23 118.7 6.3 73 153-227 13-85 (98)
156 2do0_A HnRNP M, heterogeneous 99.7 7.1E-18 2.4E-22 118.2 10.1 72 153-227 13-84 (114)
157 2ek1_A RNA-binding protein 12; 99.7 6.5E-19 2.2E-23 119.5 4.5 73 153-227 13-85 (95)
158 1wi8_A EIF-4B, eukaryotic tran 99.7 3.9E-18 1.3E-22 117.6 8.4 71 153-227 13-84 (104)
159 2db1_A Heterogeneous nuclear r 99.7 6.6E-18 2.2E-22 119.2 9.7 83 9-93 13-99 (118)
160 1sjq_A Polypyrimidine tract-bi 99.7 3.7E-18 1.3E-22 117.1 8.1 81 8-95 11-95 (105)
161 2dhg_A TRNA selenocysteine ass 99.7 6.3E-18 2.2E-22 116.5 9.3 72 153-227 7-80 (104)
162 2lea_A Serine/arginine-rich sp 99.7 1.8E-18 6.2E-23 124.9 6.9 87 7-94 41-129 (135)
163 1wel_A RNA-binding protein 12; 99.7 2.4E-18 8.1E-23 122.6 7.3 85 8-93 20-105 (124)
164 2cq1_A PTB-like protein L; RRM 99.7 3.5E-17 1.2E-21 112.0 12.8 82 7-95 9-94 (101)
165 1x5t_A Splicing factor 3B subu 99.7 1.2E-18 4.1E-23 118.4 5.4 73 153-227 3-76 (96)
166 3n9u_C Cleavage and polyadenyl 99.7 2.4E-18 8.1E-23 127.3 7.4 72 154-227 54-127 (156)
167 1oo0_B CG8781-PA, drosophila Y 99.7 3.2E-18 1.1E-22 119.3 7.7 73 153-227 24-96 (110)
168 3r27_A HnRNP L, heterogeneous 99.7 7.8E-18 2.7E-22 114.4 9.3 78 9-93 17-98 (100)
169 2hgl_A HNRPF protein, heteroge 99.7 6.2E-18 2.1E-22 122.0 9.2 82 9-92 40-125 (136)
170 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.2E-18 1.1E-22 117.2 7.4 85 8-93 14-99 (100)
171 2cq4_A RNA binding motif prote 99.7 1.6E-18 5.3E-23 121.7 5.8 81 13-94 25-106 (114)
172 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 8E-18 2.7E-22 122.1 9.8 73 153-227 61-133 (140)
173 1p1t_A Cleavage stimulation fa 99.7 1.4E-18 4.8E-23 119.8 5.5 72 154-227 7-78 (104)
174 2nlw_A Eukaryotic translation 99.7 5E-18 1.7E-22 117.4 8.2 85 6-93 8-101 (105)
175 1fj7_A Nucleolin RBD1, protein 99.7 6.5E-19 2.2E-23 120.9 3.7 84 10-95 14-98 (101)
176 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-17 4.3E-22 117.2 10.3 81 8-95 26-110 (119)
177 1u6f_A Tcubp1, RNA-binding pro 99.7 2E-17 6.7E-22 120.0 11.7 73 153-227 40-112 (139)
178 2mss_A Protein (musashi1); RNA 99.7 1.8E-18 6E-23 112.2 5.5 68 157-227 1-68 (75)
179 2kn4_A Immunoglobulin G-bindin 99.7 7.9E-18 2.7E-22 124.8 9.8 85 9-94 66-152 (158)
180 2jwn_A Embryonic polyadenylate 99.7 1.4E-17 4.6E-22 118.5 10.6 81 13-94 36-117 (124)
181 1wez_A HnRNP H', FTP-3, hetero 99.7 5E-18 1.7E-22 116.7 8.0 70 153-227 13-82 (102)
182 2nlw_A Eukaryotic translation 99.7 4E-18 1.4E-22 117.8 7.5 72 154-227 14-89 (105)
183 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.9E-22 121.3 10.0 80 9-89 59-140 (140)
184 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.9E-18 1.7E-22 126.9 8.2 73 153-227 70-142 (165)
185 2fy1_A RNA-binding motif prote 99.7 5.6E-18 1.9E-22 119.2 8.1 72 153-227 5-76 (116)
186 4a8x_A RNA-binding protein wit 99.7 3.2E-18 1.1E-22 114.3 6.4 72 154-227 3-75 (88)
187 2hgm_A HNRPF protein, heteroge 99.7 5.1E-18 1.7E-22 120.6 7.7 82 9-92 38-121 (126)
188 2lcw_A RNA-binding protein FUS 99.6 1.7E-19 5.8E-24 127.0 0.0 87 9-96 3-99 (116)
189 3n9u_C Cleavage and polyadenyl 99.7 7.2E-18 2.5E-22 124.7 8.8 80 12-92 54-137 (156)
190 3ex7_B RNA-binding protein 8A; 99.7 6.4E-18 2.2E-22 120.6 8.2 73 153-227 20-92 (126)
191 1wg5_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 115.4 9.1 71 153-227 13-84 (104)
192 3ulh_A THO complex subunit 4; 99.7 6.5E-18 2.2E-22 117.1 7.9 72 153-227 27-98 (107)
193 2cq3_A RNA-binding protein 9; 99.7 1.7E-17 5.9E-22 114.1 9.9 71 153-227 13-83 (103)
194 2cpe_A RNA-binding protein EWS 99.7 6.9E-18 2.4E-22 118.1 8.0 73 153-227 13-93 (113)
195 1x4a_A Splicing factor, argini 99.7 2.1E-17 7.2E-22 114.9 10.4 70 153-227 20-89 (109)
196 2dnn_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 118.9 6.0 68 155-227 16-83 (109)
197 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5.1E-22 115.7 9.3 82 8-92 24-107 (109)
198 3ucg_A Polyadenylate-binding p 99.7 5.8E-18 2E-22 113.3 7.0 70 155-227 6-75 (89)
199 2hgn_A Heterogeneous nuclear r 99.7 1.7E-18 5.9E-23 125.3 4.5 84 9-94 42-125 (139)
200 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.4E-17 4.8E-22 114.6 8.9 71 153-227 13-83 (103)
201 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.7E-18 2E-22 116.0 6.9 71 153-227 17-88 (100)
202 2cqg_A TDP-43, TAR DNA-binding 99.7 2.3E-17 7.7E-22 113.6 9.8 71 153-227 13-83 (103)
203 2cpi_A CCR4-NOT transcription 99.7 1.4E-17 4.7E-22 116.3 8.8 73 153-227 13-91 (111)
204 1fjc_A Nucleolin RBD2, protein 99.7 1.3E-17 4.6E-22 113.2 8.5 83 6-94 9-93 (96)
205 2db1_A Heterogeneous nuclear r 99.7 4.7E-18 1.6E-22 120.0 6.5 71 153-227 15-88 (118)
206 2hgl_A HNRPF protein, heteroge 99.7 3.8E-18 1.3E-22 123.1 5.9 71 153-227 42-115 (136)
207 1wel_A RNA-binding protein 12; 99.7 6.6E-18 2.2E-22 120.3 7.1 71 154-227 24-94 (124)
208 2dgv_A HnRNP M, heterogeneous 99.7 1.5E-17 5.3E-22 112.0 8.6 71 153-227 6-76 (92)
209 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.5E-18 1.2E-22 111.3 5.2 69 156-227 1-69 (77)
210 2rs2_A Musashi-1, RNA-binding 99.7 6.8E-18 2.3E-22 117.5 7.0 72 153-227 23-94 (109)
211 2dnq_A RNA-binding protein 4B; 99.7 4.8E-17 1.6E-21 109.1 10.9 78 9-95 4-83 (90)
212 1sjq_A Polypyrimidine tract-bi 99.7 8.2E-18 2.8E-22 115.4 7.2 67 153-227 14-82 (105)
213 2ki2_A SS-DNA binding protein 99.7 1.9E-18 6.6E-23 116.0 3.9 79 14-94 2-82 (90)
214 2cq4_A RNA binding motif prote 99.7 6.9E-18 2.3E-22 118.3 6.9 71 154-227 24-94 (114)
215 2cpx_A Hypothetical protein FL 99.7 6.2E-18 2.1E-22 118.7 6.6 87 8-95 20-108 (115)
216 3r27_A HnRNP L, heterogeneous 99.7 6.8E-18 2.3E-22 114.7 6.6 70 150-227 16-87 (100)
217 2cpj_A Non-POU domain-containi 99.7 4.3E-17 1.5E-21 111.4 10.6 82 7-95 9-92 (99)
218 2cpy_A RNA-binding protein 12; 99.7 5.1E-18 1.8E-22 119.0 6.1 71 153-227 13-84 (114)
219 2ytc_A PRE-mRNA-splicing facto 99.7 4.5E-17 1.5E-21 108.0 10.3 79 5-90 4-85 (85)
220 1x5o_A RNA binding motif, sing 99.7 6.7E-17 2.3E-21 113.2 11.7 71 153-226 23-93 (114)
221 1iqt_A AUF1, heterogeneous nuc 99.7 2.6E-18 8.8E-23 111.4 3.9 74 15-89 1-75 (75)
222 2lmi_A GRSF-1, G-rich sequence 99.7 6.3E-18 2.1E-22 117.2 6.1 85 7-93 5-93 (107)
223 2ki2_A SS-DNA binding protein 99.7 3.8E-18 1.3E-22 114.5 4.7 69 156-227 2-70 (90)
224 3pgw_S U1-70K; protein-RNA com 99.7 1.7E-18 5.7E-23 148.0 3.5 72 154-227 101-172 (437)
225 2kt5_A RNA and export factor-b 99.7 8.2E-17 2.8E-21 114.5 11.7 72 153-227 33-104 (124)
226 1x4d_A Matrin 3; structural ge 99.7 1.4E-17 4.6E-22 114.1 7.2 67 153-227 13-82 (102)
227 1x4f_A Matrin 3; structural ge 99.7 2.4E-17 8.3E-22 114.5 8.2 80 9-95 21-105 (112)
228 3pgw_S U1-70K; protein-RNA com 99.7 9.8E-17 3.4E-21 137.0 13.8 84 10-94 99-184 (437)
229 1why_A Hypothetical protein ri 99.7 6.6E-17 2.3E-21 110.0 10.3 79 9-94 13-95 (97)
230 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.1E-17 7.1E-22 122.3 8.3 73 153-227 37-109 (156)
231 2cq1_A PTB-like protein L; RRM 99.7 4.4E-17 1.5E-21 111.6 9.2 68 152-227 12-81 (101)
232 2dgt_A RNA-binding protein 30; 99.7 1.4E-16 4.9E-21 107.3 11.7 79 8-95 5-85 (92)
233 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-17 3.6E-22 109.0 5.7 75 14-89 1-76 (77)
234 2wbr_A GW182, gawky, LD47780P; 99.7 4E-17 1.4E-21 107.3 8.3 73 11-90 5-79 (89)
235 2pe8_A Splicing factor 45; RRM 99.7 3.3E-17 1.1E-21 113.0 8.2 75 153-227 6-84 (105)
236 1iqt_A AUF1, heterogeneous nuc 99.7 5.5E-18 1.9E-22 109.8 4.0 68 157-227 1-68 (75)
237 2a3j_A U1 small nuclear ribonu 99.7 3.8E-17 1.3E-21 116.5 8.6 82 9-94 25-112 (127)
238 2dgx_A KIAA0430 protein; RRM d 99.7 2.3E-17 7.9E-22 112.1 7.2 69 154-227 8-80 (96)
239 1wex_A Hypothetical protein (r 99.7 3.7E-17 1.3E-21 112.6 8.2 70 150-227 10-81 (104)
240 3md3_A Nuclear and cytoplasmic 99.7 1.5E-16 5.2E-21 118.1 12.2 84 6-90 80-165 (166)
241 2xs2_A Deleted in azoospermia- 99.7 1.2E-17 4.1E-22 114.7 5.7 83 9-94 5-88 (102)
242 4f02_A Polyadenylate-binding p 99.7 2.4E-17 8.2E-22 128.1 7.9 73 153-227 13-85 (213)
243 2dgw_A Probable RNA-binding pr 99.7 3.2E-17 1.1E-21 110.2 7.5 70 153-227 8-77 (91)
244 2e5j_A Methenyltetrahydrofolat 99.7 6E-17 2.1E-21 110.2 8.9 80 9-94 15-96 (97)
245 2dha_A FLJ20171 protein; RRM d 99.7 2.6E-17 8.8E-22 116.7 7.1 81 10-92 20-105 (123)
246 2dnp_A RNA-binding protein 14; 99.7 1.3E-16 4.4E-21 107.0 10.1 77 9-94 5-83 (90)
247 1nu4_A U1A RNA binding domain; 99.7 3.6E-17 1.2E-21 111.2 7.4 83 8-94 3-91 (97)
248 2lmi_A GRSF-1, G-rich sequence 99.7 2.2E-17 7.4E-22 114.5 6.2 71 153-227 9-82 (107)
249 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4E-21 111.0 9.9 77 9-94 27-105 (108)
250 2ad9_A Polypyrimidine tract-bi 99.7 4E-17 1.4E-21 114.6 7.4 68 152-227 28-97 (119)
251 2dis_A Unnamed protein product 99.7 2.9E-17 9.9E-22 114.2 6.7 73 153-227 6-82 (109)
252 2krb_A Eukaryotic translation 99.7 2.2E-17 7.5E-22 108.6 5.7 71 13-86 1-80 (81)
253 1x4g_A Nucleolysin TIAR; struc 99.7 1.5E-16 5.2E-21 110.5 10.1 78 10-94 22-101 (109)
254 1why_A Hypothetical protein ri 99.7 1.6E-16 5.6E-21 108.0 10.0 68 152-227 14-83 (97)
255 3lqv_A PRE-mRNA branch site pr 99.7 8.2E-17 2.8E-21 113.0 8.7 82 9-94 4-87 (115)
256 3beg_B Splicing factor, argini 99.7 5.4E-17 1.8E-21 114.0 7.7 78 9-94 12-96 (115)
257 2f3j_A RNA and export factor b 99.7 4.7E-16 1.6E-20 117.3 13.3 72 153-227 86-157 (177)
258 2hgn_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 120.5 4.7 70 153-227 44-113 (139)
259 2jwn_A Embryonic polyadenylate 99.7 3.2E-17 1.1E-21 116.6 6.5 70 155-227 36-105 (124)
260 3q2s_C Cleavage and polyadenyl 99.7 2.5E-17 8.5E-22 129.3 6.4 72 154-227 67-140 (229)
261 2err_A Ataxin-2-binding protei 99.7 3.9E-17 1.3E-21 113.6 6.7 71 153-227 27-97 (109)
262 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.5E-21 120.9 11.1 87 10-97 101-188 (196)
263 2e5g_A U6 snRNA-specific termi 99.7 3.6E-16 1.2E-20 105.7 11.2 79 10-94 5-84 (94)
264 2wbr_A GW182, gawky, LD47780P; 99.7 5.6E-17 1.9E-21 106.6 6.9 65 155-227 7-71 (89)
265 2fc8_A NCL protein; structure 99.7 1.1E-16 3.9E-21 109.8 8.9 70 153-227 13-82 (102)
266 2a3j_A U1 small nuclear ribonu 99.7 8E-17 2.7E-21 114.8 8.3 70 153-227 27-100 (127)
267 1x4b_A Heterogeneous nuclear r 99.7 2.7E-17 9.4E-22 115.6 5.7 71 154-227 26-96 (116)
268 2la4_A Nuclear and cytoplasmic 99.7 8.3E-17 2.8E-21 110.3 8.0 76 10-92 24-101 (101)
269 2fc9_A NCL protein; structure 99.7 9.3E-17 3.2E-21 110.1 8.1 69 153-227 13-81 (101)
270 1wf1_A RNA-binding protein RAL 99.7 2.5E-16 8.5E-21 109.6 10.4 77 9-94 23-102 (110)
271 2xnq_A Nuclear polyadenylated 99.7 2.7E-16 9.2E-21 107.0 10.1 77 8-93 17-96 (97)
272 2hgm_A HNRPF protein, heteroge 99.7 5.4E-17 1.9E-21 115.3 6.9 70 153-227 40-111 (126)
273 2cpd_A Apobec-1 stimulating pr 99.7 8.7E-16 3E-20 104.8 12.6 79 7-94 9-91 (99)
274 3lqv_A PRE-mRNA branch site pr 99.7 1.1E-16 3.9E-21 112.2 8.2 70 153-227 6-75 (115)
275 3q2s_C Cleavage and polyadenyl 99.7 9.4E-17 3.2E-21 126.0 8.5 79 12-91 67-149 (229)
276 2cpx_A Hypothetical protein FL 99.7 6.3E-17 2.2E-21 113.5 6.6 73 153-227 23-95 (115)
277 2kvi_A Nuclear polyadenylated 99.7 1.2E-16 4.1E-21 108.5 7.8 77 9-94 6-85 (96)
278 2f3j_A RNA and export factor b 99.7 1.5E-16 5E-21 120.0 9.0 82 10-93 85-168 (177)
279 1x4c_A Splicing factor, argini 99.7 2.3E-16 7.8E-21 109.5 8.9 64 154-226 14-77 (108)
280 1fj7_A Nucleolin RBD1, protein 99.7 2E-17 6.8E-22 113.4 3.3 71 153-227 15-85 (101)
281 2dha_A FLJ20171 protein; RRM d 99.7 3.7E-17 1.3E-21 115.9 4.8 71 153-227 21-95 (123)
282 2ytc_A PRE-mRNA-splicing facto 99.7 2.6E-16 8.7E-21 104.3 8.6 67 153-227 10-77 (85)
283 2e44_A Insulin-like growth fac 99.7 1.9E-16 6.4E-21 107.5 8.1 80 9-93 11-93 (96)
284 2cpj_A Non-POU domain-containi 99.7 2E-16 6.9E-21 108.0 8.1 67 153-227 13-79 (99)
285 2i2y_A Fusion protein consists 99.7 1.9E-16 6.5E-21 116.3 8.5 80 8-93 68-149 (150)
286 2jvr_A Nucleolar protein 3; RN 99.7 1.7E-16 5.9E-21 110.4 7.3 79 9-92 24-105 (111)
287 2lcw_A RNA-binding protein FUS 99.5 6.7E-18 2.3E-22 118.8 0.0 73 153-227 5-85 (116)
288 1x4f_A Matrin 3; structural ge 99.7 3E-16 1E-20 109.0 8.3 67 153-227 23-92 (112)
289 1wg1_A KIAA1579 protein, homol 99.7 4.9E-16 1.7E-20 103.8 9.0 76 11-93 3-79 (88)
290 2e5j_A Methenyltetrahydrofolat 99.7 3.4E-16 1.2E-20 106.4 8.2 68 153-227 17-84 (97)
291 2qfj_A FBP-interacting repress 99.7 1E-15 3.4E-20 118.7 11.7 83 11-94 123-207 (216)
292 2g4b_A Splicing factor U2AF 65 99.7 8.3E-16 2.8E-20 115.0 10.8 80 10-90 91-172 (172)
293 1fxl_A Paraneoplastic encephal 99.7 2.5E-16 8.6E-21 117.0 7.8 71 155-227 2-72 (167)
294 2j8a_A Histone-lysine N-methyl 99.6 3E-16 1E-20 110.0 7.6 76 14-90 3-94 (136)
295 3d2w_A TAR DNA-binding protein 99.6 4.5E-16 1.5E-20 104.2 8.1 80 7-94 5-86 (89)
296 3beg_B Splicing factor, argini 99.6 2.8E-16 9.6E-21 110.3 7.5 65 154-227 15-79 (115)
297 2xs2_A Deleted in azoospermia- 99.6 4.7E-17 1.6E-21 111.8 3.4 68 154-226 8-75 (102)
298 2j8a_A Histone-lysine N-methyl 99.6 7.7E-17 2.6E-21 113.0 4.4 70 156-227 3-86 (136)
299 2jvr_A Nucleolar protein 3; RN 99.6 1.2E-16 4.1E-21 111.2 5.3 68 154-227 27-95 (111)
300 2dnq_A RNA-binding protein 4B; 99.6 4.5E-16 1.5E-20 104.4 7.9 65 153-227 6-70 (90)
301 3egn_A RNA-binding protein 40; 99.6 7.3E-17 2.5E-21 117.6 4.2 85 9-94 41-132 (143)
302 1nu4_A U1A RNA binding domain; 99.6 1.6E-16 5.4E-21 108.0 5.6 70 153-227 6-79 (97)
303 2yh0_A Splicing factor U2AF 65 99.6 1.3E-15 4.3E-20 116.5 11.1 83 11-94 112-196 (198)
304 2cjk_A Nuclear polyadenylated 99.6 2.3E-16 7.7E-21 117.5 6.6 80 12-92 86-166 (167)
305 1whx_A Hypothetical protein ri 99.6 3.9E-16 1.3E-20 108.8 7.3 75 11-92 8-84 (111)
306 2dnl_A Cytoplasmic polyadenyla 99.6 2.4E-16 8.2E-21 110.5 6.3 68 154-224 7-80 (114)
307 1x5p_A Negative elongation fac 99.6 4.8E-15 1.6E-19 100.7 12.6 77 9-94 11-89 (97)
308 2cqh_A IGF-II mRNA-binding pro 99.6 8.6E-16 2.9E-20 103.6 8.7 80 9-95 4-86 (93)
309 2dnl_A Cytoplasmic polyadenyla 99.6 1.6E-15 5.6E-20 106.2 10.3 75 10-88 5-84 (114)
310 2e44_A Insulin-like growth fac 99.6 1.2E-15 4E-20 103.5 8.5 68 154-227 14-82 (96)
311 1x4g_A Nucleolysin TIAR; struc 99.6 5.7E-16 1.9E-20 107.6 7.0 67 153-227 23-89 (109)
312 2dgu_A Heterogeneous nuclear r 99.6 8.9E-16 3.1E-20 105.5 7.8 65 153-227 9-73 (103)
313 1whx_A Hypothetical protein ri 99.6 4.8E-16 1.6E-20 108.4 6.5 66 154-227 9-74 (111)
314 2kvi_A Nuclear polyadenylated 99.6 7.4E-16 2.5E-20 104.6 7.2 65 153-227 8-73 (96)
315 2xnq_A Nuclear polyadenylated 99.6 8.6E-16 2.9E-20 104.5 7.5 65 153-227 20-85 (97)
316 2hvz_A Splicing factor, argini 99.6 2.4E-16 8.3E-21 107.9 4.7 65 156-227 1-65 (101)
317 2la4_A Nuclear and cytoplasmic 99.6 6.5E-16 2.2E-20 105.8 6.7 66 154-227 26-91 (101)
318 1wf0_A TDP-43, TAR DNA-binding 99.6 9.8E-16 3.4E-20 102.2 7.4 78 11-95 3-81 (88)
319 2cq2_A Hypothetical protein LO 99.6 1.1E-15 3.7E-20 106.3 7.8 79 9-94 21-108 (114)
320 2jvo_A Nucleolar protein 3; nu 99.6 6.8E-16 2.3E-20 107.1 6.8 65 153-227 29-93 (108)
321 3zzy_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 106.2 10.2 77 12-94 27-108 (130)
322 3ue2_A Poly(U)-binding-splicin 99.6 5.2E-16 1.8E-20 109.1 5.9 75 153-227 18-99 (118)
323 2dnp_A RNA-binding protein 14; 99.6 1.3E-15 4.5E-20 102.0 7.6 65 153-227 7-71 (90)
324 3egn_A RNA-binding protein 40; 99.6 1.1E-16 3.9E-21 116.6 2.5 74 152-227 42-120 (143)
325 2cq2_A Hypothetical protein LO 99.6 5.5E-16 1.9E-20 107.8 5.7 64 153-224 23-88 (114)
326 1b7f_A Protein (SXL-lethal pro 99.6 4.5E-15 1.5E-19 110.4 11.0 80 9-89 85-168 (168)
327 1fjc_A Nucleolin RBD2, protein 99.6 3.7E-16 1.3E-20 106.0 4.6 68 153-227 14-81 (96)
328 1fje_B Nucleolin RBD12, protei 99.6 3.3E-15 1.1E-19 112.1 10.3 80 8-93 94-175 (175)
329 1wf1_A RNA-binding protein RAL 99.6 3.2E-15 1.1E-19 103.9 9.4 64 154-227 26-90 (110)
330 3v4m_A Splicing factor U2AF 65 99.6 1.1E-15 3.9E-20 105.3 6.8 75 153-227 3-87 (105)
331 1sjr_A Polypyrimidine tract-bi 99.6 2.3E-15 7.8E-20 111.0 8.7 79 11-94 44-126 (164)
332 2e5i_A Heterogeneous nuclear r 99.6 7.5E-15 2.6E-19 103.8 11.0 74 14-94 26-104 (124)
333 2e5g_A U6 snRNA-specific termi 99.6 2.2E-15 7.5E-20 101.8 7.7 66 154-227 7-72 (94)
334 2dgt_A RNA-binding protein 30; 99.6 1.7E-15 5.7E-20 102.0 6.7 65 153-227 8-72 (92)
335 2cpd_A Apobec-1 stimulating pr 99.6 3.8E-15 1.3E-19 101.6 8.6 65 153-227 13-79 (99)
336 2hzc_A Splicing factor U2AF 65 99.6 2.1E-15 7.1E-20 100.3 7.0 73 9-88 2-86 (87)
337 3nmr_A Cugbp ELAV-like family 99.6 2.5E-15 8.7E-20 112.4 8.0 70 154-225 2-73 (175)
338 3tyt_A Heterogeneous nuclear r 99.6 1.9E-15 6.6E-20 116.6 7.3 68 153-227 2-70 (205)
339 2diu_A KIAA0430 protein; struc 99.6 4.9E-15 1.7E-19 98.3 8.0 74 10-94 5-86 (96)
340 1wg1_A KIAA1579 protein, homol 99.6 1.9E-15 6.4E-20 100.9 5.8 65 154-227 4-68 (88)
341 1x5p_A Negative elongation fac 99.6 8.2E-15 2.8E-19 99.5 8.9 65 153-227 13-77 (97)
342 2voo_A Lupus LA protein; RNA-b 99.6 1.2E-14 4.2E-19 111.0 10.7 78 13-92 109-187 (193)
343 2cqh_A IGF-II mRNA-binding pro 99.6 1.6E-15 5.4E-20 102.3 4.8 66 153-227 6-73 (93)
344 2hzc_A Splicing factor U2AF 65 99.6 2.5E-15 8.6E-20 99.9 5.6 66 153-227 4-80 (87)
345 2diu_A KIAA0430 protein; struc 99.6 5E-15 1.7E-19 98.2 6.7 63 153-227 6-74 (96)
346 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-14 6.2E-19 110.1 10.9 69 155-227 109-177 (193)
347 2pe8_A Splicing factor 45; RRM 99.6 2.1E-14 7.2E-19 98.9 10.1 81 10-91 5-93 (105)
348 1sjr_A Polypyrimidine tract-bi 99.6 5.3E-15 1.8E-19 109.0 7.3 65 156-226 47-111 (164)
349 3zzy_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 104.5 7.5 64 156-226 29-93 (130)
350 2e5i_A Heterogeneous nuclear r 99.6 3.6E-14 1.2E-18 100.3 10.9 65 154-226 22-89 (124)
351 2bz2_A Negative elongation fac 99.6 1.4E-14 4.8E-19 102.4 8.6 76 10-94 36-113 (121)
352 3d2w_A TAR DNA-binding protein 99.5 7.2E-15 2.5E-19 98.3 5.9 55 153-214 9-63 (89)
353 2bz2_A Negative elongation fac 99.5 9.1E-15 3.1E-19 103.4 6.7 65 153-227 37-101 (121)
354 2dit_A HIV TAT specific factor 99.5 2.4E-14 8E-19 99.9 8.3 72 152-227 12-92 (112)
355 2dit_A HIV TAT specific factor 99.5 2.5E-13 8.4E-18 94.7 11.5 85 5-94 7-104 (112)
356 2adc_A Polypyrimidine tract-bi 99.5 3.4E-14 1.2E-18 111.4 7.6 68 153-227 32-100 (229)
357 3u1l_A PRE-mRNA-splicing facto 99.5 4.3E-14 1.5E-18 110.7 7.4 78 10-94 131-231 (240)
358 3tht_A Alkylated DNA repair pr 99.5 6.7E-14 2.3E-18 115.2 7.3 67 153-225 16-82 (345)
359 1jmt_A Splicing factor U2AF 35 99.5 6.2E-14 2.1E-18 96.4 5.9 55 172-227 41-96 (104)
360 3pgw_A U1-A; protein-RNA compl 99.5 2.5E-13 8.5E-18 109.6 10.2 75 10-90 204-281 (282)
361 3u1l_A PRE-mRNA-splicing facto 99.5 4.8E-14 1.6E-18 110.5 5.6 66 153-224 132-204 (240)
362 1wf0_A TDP-43, TAR DNA-binding 99.5 1.7E-14 5.8E-19 96.1 2.4 55 154-215 4-58 (88)
363 3s6e_A RNA-binding protein 39; 99.5 3.1E-14 1.1E-18 99.3 3.8 71 153-227 5-83 (114)
364 1qm9_A Polypyrimidine tract-bi 99.4 7.7E-14 2.6E-18 106.7 5.1 66 155-227 3-69 (198)
365 3v4m_A Splicing factor U2AF 65 99.4 4.2E-13 1.4E-17 92.3 7.6 80 11-91 3-96 (105)
366 3sde_A Paraspeckle component 1 99.4 7.6E-13 2.6E-17 105.7 9.6 82 11-94 94-181 (261)
367 3ue2_A Poly(U)-binding-splicin 99.4 1.4E-12 4.8E-17 91.5 8.9 80 11-91 18-108 (118)
368 1jmt_A Splicing factor U2AF 35 99.4 1.2E-13 4.2E-18 94.9 2.9 70 18-89 20-103 (104)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.7E-11 1.6E-15 81.1 10.1 75 13-94 10-92 (100)
370 3tht_A Alkylated DNA repair pr 99.3 1.1E-11 3.6E-16 102.2 8.1 76 8-90 13-97 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.6E-11 8.9E-16 82.4 8.7 49 168-221 28-76 (100)
372 3s6e_A RNA-binding protein 39; 99.2 1.2E-10 4.2E-15 81.0 9.2 77 10-91 4-92 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 9.2E-11 3.1E-15 77.1 5.5 67 152-227 4-76 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 2.4E-10 8E-15 79.9 7.0 67 153-226 16-85 (121)
375 3dxb_A Thioredoxin N-terminall 99.1 1.9E-10 6.4E-15 89.6 6.6 59 169-227 141-203 (222)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.7E-09 5.8E-14 75.5 8.8 76 8-90 13-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 1.5E-10 5E-15 76.4 2.9 68 151-227 11-85 (95)
378 2dnr_A Synaptojanin-1; RRM dom 99.0 1.6E-09 5.3E-14 71.2 7.4 73 10-91 4-85 (91)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 7.1E-09 2.4E-13 68.4 3.5 74 9-91 11-94 (95)
380 3dxb_A Thioredoxin N-terminall 98.7 3.4E-08 1.1E-12 76.7 7.6 65 25-90 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 1.2E-07 4E-12 63.9 6.0 66 154-227 20-90 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.9 5.3E-05 1.8E-09 51.0 7.2 73 10-89 18-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.8 0.0003 1E-08 46.9 9.7 75 11-94 6-86 (104)
384 1whv_A Poly(A)-specific ribonu 97.5 0.00029 9.9E-09 46.4 6.7 53 156-219 17-69 (100)
385 1uw4_A UPF3X; nonsense mediate 97.4 0.00074 2.5E-08 44.3 7.4 67 14-81 2-72 (91)
386 1wey_A Calcipressin 1; structu 97.4 0.00022 7.5E-09 47.8 4.5 67 155-227 5-74 (104)
387 1whv_A Poly(A)-specific ribonu 97.4 0.00057 1.9E-08 45.0 6.2 56 10-73 13-69 (100)
388 3ctr_A Poly(A)-specific ribonu 97.2 0.00047 1.6E-08 45.5 4.4 53 157-220 8-60 (101)
389 1uw4_A UPF3X; nonsense mediate 97.0 0.003 1E-07 41.4 7.0 67 157-225 3-71 (91)
390 1wwh_A Nucleoporin 35, nucleop 97.0 0.0016 5.4E-08 44.8 5.5 61 156-226 25-85 (119)
391 2l08_A Regulator of nonsense t 96.9 0.0022 7.4E-08 42.4 5.8 69 12-81 8-80 (97)
392 1wey_A Calcipressin 1; structu 96.9 0.002 7E-08 43.0 5.6 74 12-92 4-84 (104)
393 3ctr_A Poly(A)-specific ribonu 96.9 0.001 3.5E-08 44.0 4.0 54 13-74 6-60 (101)
394 2dhx_A Poly (ADP-ribose) polym 96.7 0.0056 1.9E-07 40.8 6.2 55 154-218 7-66 (104)
395 1wwh_A Nucleoporin 35, nucleop 96.0 0.031 1E-06 38.4 7.2 73 10-90 21-95 (119)
396 2l08_A Regulator of nonsense t 95.7 0.023 7.7E-07 37.5 5.4 69 155-225 9-79 (97)
397 3pq1_A Poly(A) RNA polymerase; 94.5 0.017 5.9E-07 49.2 2.5 56 155-218 53-108 (464)
398 3p3d_A Nucleoporin 53; structu 94.2 0.055 1.9E-06 37.7 4.2 78 12-91 6-98 (132)
399 3p3d_A Nucleoporin 53; structu 93.9 0.031 1.1E-06 38.9 2.4 66 157-226 9-88 (132)
400 3pq1_A Poly(A) RNA polymerase; 93.7 0.027 9.2E-07 48.0 2.1 57 13-75 53-110 (464)
401 3d45_A Poly(A)-specific ribonu 81.8 3.9 0.00013 35.3 7.1 56 12-75 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 81.0 2.8 9.4E-05 36.2 5.9 54 156-220 441-494 (507)
403 4e8u_A Putative uncharacterize 44.6 31 0.0011 25.0 4.4 59 157-218 14-82 (172)
404 2i9x_A Putative septation prot 43.9 31 0.001 21.9 3.8 26 183-208 5-30 (87)
405 2g0c_A ATP-dependent RNA helic 40.0 59 0.002 19.4 5.2 36 183-227 32-67 (76)
406 1wvf_A 4-cresol dehydrogenase 39.6 24 0.00082 30.3 3.7 43 174-217 218-262 (520)
407 2ia9_A Putative septation prot 39.3 38 0.0013 22.1 3.8 26 183-208 5-30 (100)
408 2i9z_A Putative septation prot 36.8 43 0.0015 22.1 3.8 26 183-208 5-30 (105)
409 3lpe_A Putative transcription 36.4 27 0.00092 22.3 2.7 34 184-222 40-73 (92)
410 4bby_A Alkyldihydroxyacetoneph 28.3 69 0.0024 28.4 4.9 46 173-219 359-408 (658)
411 1e8g_A Vanillyl-alcohol oxidas 27.5 51 0.0017 28.6 3.8 43 174-217 250-294 (560)
412 1xn9_A 30S ribosomal protein S 27.4 1.2E+02 0.0041 19.7 4.7 42 172-214 37-79 (101)
413 2hpu_A NOSL protein; alpha bet 26.5 52 0.0018 23.8 3.1 28 197-224 107-135 (175)
414 1igq_A Transcriptional repress 26.4 75 0.0026 18.7 3.1 23 185-208 20-42 (62)
415 2v94_A RPS24, 30S ribosomal pr 25.9 1.4E+02 0.0049 19.6 5.0 42 172-214 46-88 (107)
416 2eqj_A Metal-response element- 24.7 51 0.0017 19.7 2.2 10 199-208 41-50 (66)
417 1ywx_A 30S ribosomal protein S 24.6 1.5E+02 0.005 19.4 4.7 42 172-214 37-79 (102)
418 3fry_A Probable copper-exporti 23.8 1.1E+02 0.0038 17.5 4.4 55 157-220 8-62 (73)
419 2lfv_A Protein DAMX; cell divi 28.1 18 0.00063 23.9 0.0 50 170-221 35-86 (106)
420 1x8d_A Hypothetical protein YI 21.4 1.7E+02 0.0057 19.0 4.6 33 173-208 28-60 (104)
421 2e5p_A Protein PHF1, PHD finge 21.3 65 0.0022 19.2 2.2 11 199-209 37-47 (68)
422 3p8b_B Transcription antitermi 20.6 68 0.0023 22.3 2.7 34 184-222 33-66 (152)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=8.4e-36 Score=229.30 Aligned_cols=168 Identities=18% Similarity=0.287 Sum_probs=144.3
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeE
Q psy1680 5 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQ 83 (227)
Q Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~ 83 (227)
..+....+.++|||+|||+++|+++|+++|++| .|..|.|++++.+++++|||||+|.+.++|.+||++++ ..+.|+.
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~-~~~~g~~ 83 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP-HKVDGRV 83 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS-CEETTEE
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC-CEECCEE
Confidence 445566778999999999999999999999999 99999999999999999999999999999999999988 9999999
Q ss_pred eEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccC
Q psy1680 84 VRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNN 163 (227)
Q Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 163 (227)
|.|.++.++...... ....+..+|||+||
T Consensus 84 l~v~~~~~~~~~~~~---------------------------------------------------~~~~~~~~l~V~nL 112 (196)
T 1l3k_A 84 VEPKRAVSREDSQRP---------------------------------------------------GAHLTVKKIFVGGI 112 (196)
T ss_dssp CEEEECCC--------------------------------------------------------------CCSEEEEECC
T ss_pred eeeecccCccccccc---------------------------------------------------ccCCCcceEEEeCC
Confidence 999998765432110 00124578999999
Q ss_pred CCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 164 GPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 164 ~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|..+ ++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|.+|++. +|..|+||
T Consensus 113 p~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 113 KEDT--EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH 173 (196)
T ss_dssp TTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE
T ss_pred CCCC--CHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCE
Confidence 7655 7999999999999999999999999999999999999999999999987 68898885
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.3e-36 Score=235.06 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=140.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.+..+.++|||+|||+++|+++|+++|++| .|..|.|++++.+++++|||||+|.+.++|.+||+ +++ ..+.|+.|+
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~-~~~~g~~i~ 88 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF-DVIKGKPVR 88 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh-hhcCCcccc
Confidence 345677899999999999999999999999 99999999999999999999999999999999999 999 999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCC
Q psy1680 86 LDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGP 165 (227)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 165 (227)
+.++........ ....+|||+|||.
T Consensus 89 ~~~~~~~~~~~~-------------------------------------------------------~~~~~l~v~nl~~ 113 (213)
T 4f02_A 89 IMWSQRDPSLRK-------------------------------------------------------SGVGNIFIKNLDK 113 (213)
T ss_dssp EEECCCCTHHHH-------------------------------------------------------HCTTEEEEESCCT
T ss_pred cccccccccccc-------------------------------------------------------cccccceECCccc
Confidence 998765432110 1245799999976
Q ss_pred CCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 166 NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 166 ~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+ ++++|+++|++||.|.+|+|++|. +.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 114 ~~--t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 114 SI--DNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp TC--CHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cc--HHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 55 799999999999999999999985 56899999999999999999999999999986
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.2e-35 Score=221.08 Aligned_cols=156 Identities=16% Similarity=0.281 Sum_probs=143.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
+.++|||+|||+++++++|+++|++| .|..+.+++++.+++++|||||+|.+.++|.+|++ +++ ..+.|+.|.|.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG-LRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC-CccCCceEEEEec
Confidence 36899999999999999999999999 99999999999899999999999999999999999 999 9999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
.+.... ....+|||+|||...
T Consensus 80 ~~~~~~---------------------------------------------------------~~~~~l~v~nl~~~~-- 100 (167)
T 1fxl_A 80 RPSSAS---------------------------------------------------------IRDANLYVSGLPKTM-- 100 (167)
T ss_dssp CCCCGG---------------------------------------------------------GTTCEEEEESCCTTC--
T ss_pred CCCccc---------------------------------------------------------CCCCcEEECCCCCcC--
Confidence 754321 134579999997655
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 101 t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 101 TQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 7899999999999999999999998999999999999999999999999999999985
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.3e-35 Score=220.53 Aligned_cols=155 Identities=18% Similarity=0.310 Sum_probs=143.6
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
++++|||+|||+++++++|+++|++| .|..+.+++++.+++++|||||+|.+.++|.+|++ +++ ..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG-ITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC-CEeCCcEEEEEec
Confidence 57899999999999999999999999 99999999999999999999999999999999998 999 9999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
.++... .+..+|||+|||...
T Consensus 81 ~~~~~~---------------------------------------------------------~~~~~l~v~nl~~~~-- 101 (168)
T 1b7f_A 81 RPGGES---------------------------------------------------------IKDTNLYVTNLPRTI-- 101 (168)
T ss_dssp CCCSST---------------------------------------------------------TTTCEEEEESCCTTC--
T ss_pred CCCccc---------------------------------------------------------CCCCCEEEeCCCCCC--
Confidence 754321 235689999997655
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++++|+++|++||.|..+.+++++.++.++|+|||+|.+.++|.+|++.|||..|+|
T Consensus 102 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 102 TDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 789999999999999999999999899999999999999999999999999999987
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-35 Score=218.65 Aligned_cols=155 Identities=17% Similarity=0.297 Sum_probs=140.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
++|||+|||.++|+++|+++|++| .|..+.++.++. ++++|||||+|.+.++|.+|++ +++ ..+.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNG-KQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCC-CccCCCeeEEEEcCC
Confidence 589999999999999999999999 999999999865 7789999999999999999997 999 999999999999865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCCh
Q psy1680 92 KRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSM 171 (227)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 171 (227)
...... .+..+|||+|||... ++
T Consensus 79 ~~~~~~-------------------------------------------------------~~~~~l~v~nl~~~~--t~ 101 (166)
T 3md3_A 79 SQQSSS-------------------------------------------------------DDTFNLFVGDLNVNV--DD 101 (166)
T ss_dssp CCCCCC-------------------------------------------------------TTCEEEEEESCCTTC--CH
T ss_pred CCCCCC-------------------------------------------------------CCCceEEECCCCCCC--CH
Confidence 443111 245689999997655 78
Q ss_pred hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 172 NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++|+++|++||.|.++.+++++.+|.++|+|||+|.+.++|.+|++.|||..|+||
T Consensus 102 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 102 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 99999999999999999999999999999999999999999999999999999985
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=8.9e-34 Score=221.16 Aligned_cols=168 Identities=15% Similarity=0.201 Sum_probs=141.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
.+.++|||+|||.++|+++|+++|++| .|..|.|++++.+++++|||||+|.+.++|.+||+ +++ ..+.|+.|.|.+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~l~v~~ 104 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS-VMLGGRNIKVGR 104 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS-CCCC-CCCEEEC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC-CeeCCeeEEEec
Confidence 345899999999999999999999999 99999999998899999999999999999999999 999 999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
+........... ..........+|||+|||..+
T Consensus 105 ~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~l~v~nlp~~~- 137 (216)
T 2qfj_A 105 PSNIGQAQPIID----------------------------------------------QLAEEARAFNRIYVASVHQDL- 137 (216)
T ss_dssp CSCCGGGHHHHH----------------------------------------------HHHHHHTTSCEEEEECCCTTC-
T ss_pred CCCccccchhhh----------------------------------------------hhhcccCCCcEEEEeCCCCcC-
Confidence 764432100000 000000245689999997655
Q ss_pred CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 169 NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 138 -t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 195 (216)
T 2qfj_A 138 -SDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 195 (216)
T ss_dssp -CHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred -CHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCc
Confidence 7999999999999999999999999999999999999999999999999999999986
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6.3e-35 Score=218.91 Aligned_cols=154 Identities=18% Similarity=0.337 Sum_probs=139.6
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~ 90 (227)
++++|||+|||+++|+++|+++|++| .|..+.+++++.+++++|||||+|.+.++|.+||+ ++ ..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQ-HILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SC-CEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cc-cccCCeEccccccc
Confidence 57899999999999999999999999 99999999999999999999999999999999998 46 78999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCC
Q psy1680 91 GKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNS 170 (227)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 170 (227)
++... .+..+|||+|||... +
T Consensus 80 ~~~~~---------------------------------------------------------~~~~~l~V~nlp~~~--t 100 (167)
T 2cjk_A 80 PRDEQ---------------------------------------------------------DKTGKIFVGGIGPDV--R 100 (167)
T ss_dssp CHHHH---------------------------------------------------------HHCEEEEEEEECTTC--C
T ss_pred chhhc---------------------------------------------------------cCCCeEEECCCCCCC--C
Confidence 43221 124579999997655 7
Q ss_pred hhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 171 MNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 171 ~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|++ ++|..|+||
T Consensus 101 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 101 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp HHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred HHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 89999999999999999999999999999999999999999999998 899999986
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.5e-33 Score=211.51 Aligned_cols=154 Identities=18% Similarity=0.298 Sum_probs=135.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCC--CeecEEEEEeCCHHHHHHHHH-hCCCceeC---CeEe
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETD--RFKGFCYVEFVDVENLRQALL-KDGRITVD---GLQV 84 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~al~-~~~~~~~~---g~~l 84 (227)
++++|||+|||+++|+++|+++|++| .|..+.|++++.++ +++|||||+|.+.++|.+|++ +++ ..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN-MKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT-TCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC-cEEccCCccce
Confidence 57899999999999999999999999 99999999998877 899999999999999999998 999 7765 5677
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCC
Q psy1680 85 RLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNG 164 (227)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 164 (227)
.+.++.+..... .+..+|||+|||
T Consensus 81 ~~~~~~~~~~~~--------------------------------------------------------~~~~~l~v~nl~ 104 (175)
T 3nmr_A 81 QMKPADSEKNNA--------------------------------------------------------VEDRKLFIGMIS 104 (175)
T ss_dssp EEEECGGGCCSC--------------------------------------------------------GGGSEEEEESCC
T ss_pred EEcccccccccc--------------------------------------------------------CCCCeEEEcCCC
Confidence 777765433211 245689999997
Q ss_pred CCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 165 PNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 165 ~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
... ++++|+++|++||.|.+|+|++++ +|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 105 ~~~--t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 105 KKC--TENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp TTC--CHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred CcC--CHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 655 789999999999999999999996 4999999999999999999999999998775
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=8.2e-33 Score=214.40 Aligned_cols=187 Identities=12% Similarity=0.046 Sum_probs=137.8
Q ss_pred CCCceEEEcCCC-CCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 11 EPPYTAFVGNLP-NGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 11 ~~~~~l~V~nLp-~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
.++++|||+||| ..+++++|+++|++| .|..|+|++++ +|||||+|.+.++|+.||+ ||| ..+.|+.|.|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNN-NFMFGQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCC-CEECCceEEEE
Confidence 457899999999 899999999999999 99999998752 7999999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
++..+.......... .. ++.....+..... . +..... ........+++.+|||+|||+..
T Consensus 76 ~s~~~~~~p~~~~~~----~~--~~~~~~~~~~~~~---~--------r~~~~~---~~~~~~~~~p~~~l~v~NLp~~~ 135 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGL----ED--GSCSYKDFSESRN---N--------RFSTPE---QAAKNRIQHPSNVLHFFNAPLEV 135 (205)
T ss_dssp ECSCSCCCCCSCCBC----TT--SCBSEEECTTCTT---C--------SCSSHH---HHTTSCCCCCCSEEEEEEECTTC
T ss_pred EccCCccCCCccccc----cc--CCccccccCCCcc---c--------cccCcc---cccccccCCCcceEEEeCCCCCC
Confidence 987544311100000 00 0000000000000 0 000000 00000112567899999997665
Q ss_pred CCChhhHHhhhccccce--EEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 168 SNSMNDHGLMVTEVTTL--VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i--~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+++|++||.| .+|+++.+. +.++|+|||+|.+.++|.+||+.|||..|+|+
T Consensus 136 --t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 136 --TEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp --CHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred --CHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 789999999999998 899998875 56679999999999999999999999999885
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=8.3e-33 Score=208.31 Aligned_cols=150 Identities=25% Similarity=0.363 Sum_probs=131.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC------------CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCcee
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ------------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 79 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~------------~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~ 79 (227)
+.++|||+|||+++|+++|+++|++| .|..+.+. +++|||||+|.+.++|.+||.+++ ..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~-~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDG-IIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTT-CEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCC-cEe
Confidence 57899999999999999999999988 34444443 348999999999999999999999 999
Q ss_pred CCeEeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcce
Q psy1680 80 DGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGF 159 (227)
Q Consensus 80 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (227)
.|+.|.|.++.+.... ....+||
T Consensus 76 ~g~~i~v~~~~~~~~~---------------------------------------------------------~~~~~l~ 98 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL---------------------------------------------------------PGAHKLF 98 (172)
T ss_dssp TTEECEEECCSSCCCC---------------------------------------------------------TTTTCEE
T ss_pred cCceeeecCCcccCCC---------------------------------------------------------CCCCEEE
Confidence 9999999986543221 1256899
Q ss_pred eccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 160 RNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 160 v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|+|||... ++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 99 v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 99 IGGLPNYL--NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp EECCCTTC--CHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE
T ss_pred EEcCCCcC--CHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe
Confidence 99997655 7899999999999999999999998999999999999999999999999999999986
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.2e-33 Score=216.12 Aligned_cols=177 Identities=23% Similarity=0.273 Sum_probs=135.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEE-----EeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVR-----LVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 84 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~-----i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l 84 (227)
..+++|||+|||+++|+++|+++|++| .|..+. .+.+...++++|||||+|.+.++|.+||.+++ ..+.|+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g-~~~~g~~i 80 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDG-IIFQGQSL 80 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTT-EEETTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcC-CEEcCceE
Confidence 357899999999999999999999988 433211 11111224558999999999999999999999 99999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCC
Q psy1680 85 RLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNG 164 (227)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 164 (227)
.|.++.++......... ... .. + .........+..+|||+|||
T Consensus 81 ~v~~~~~~~~~~~~~~~--------------~~~-~~---------~-------------~~~~~~~~~~~~~l~v~nl~ 123 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSEN--------------PSV-YV---------P-------------GVVSTVVPDSAHKLFIGGLP 123 (198)
T ss_dssp EEECCCCCCCCCCSSSC--------------SSC-CC---------T-------------TSSCCCSSCCCCEEEEECCC
T ss_pred EEeCCCCCCCCCCCcCC--------------CcC-CC---------C-------------CCccCCCCCCCCEEEEeCCC
Confidence 99998765432210000 000 00 0 00001112456899999997
Q ss_pred CCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 165 PNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 165 ~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
... ++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 124 ~~~--~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 184 (198)
T 2yh0_A 124 NYL--NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 184 (198)
T ss_dssp TTC--CHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTE
T ss_pred CCC--CHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 655 7899999999999999999999998999999999999999999999999999999985
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=3.3e-33 Score=211.24 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=134.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
.+..+.++|||+|||.++|+++|+++|++| .+.. .++.+..+++++|||||+|.+.++|.+||++++ ..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGG-EEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCC-CEeCCeEEEE
Confidence 356778999999999999999999999999 7655 444555678889999999999999999999999 9999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCC
Q psy1680 87 DIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPN 166 (227)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 166 (227)
.++.++..... .+..+|||+|||..
T Consensus 86 ~~~~~~~~~~~-------------------------------------------------------~~~~~l~v~nlp~~ 110 (175)
T 1fje_B 86 EKPKGRDSKKV-------------------------------------------------------RAARTLLAKNLSFN 110 (175)
T ss_dssp ECCCCSSCSTT-------------------------------------------------------GGGGEEEEESCCSS
T ss_pred ecCCCcccccc-------------------------------------------------------ccCCEEEEeCCCCC
Confidence 99876543111 24668999999765
Q ss_pred CCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 167 RSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 167 ~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
. ++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 111 ~--t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 111 I--TEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp C--CHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred C--CHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 5 789999999999988766 46789999999999999999999999999999986
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=1.2e-31 Score=217.67 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=144.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..+.++|||+|||..+++++|+++|++| .|..+.++.++.++.++|||||+|.+.++|.+|++ +++ ..++|+.|.|.
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~i~v~ 170 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG-KPLGPRTLYVH 170 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEE
Confidence 3456899999999999999999999999 99999999999999999999999999999999997 999 99999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
++.++..... ..+..+|||+|||..+
T Consensus 171 ~a~~~~~~~~------------------------------------------------------~~~~~~l~v~nlp~~~ 196 (284)
T 3smz_A 171 WTDAGQLTPA------------------------------------------------------LLHSRCLCVDRLPPGF 196 (284)
T ss_dssp ECCGGGCCTT------------------------------------------------------TTSCSEEEEECCCTTC
T ss_pred ECCCCCCCcc------------------------------------------------------cCCccEEEEecCCccc
Confidence 9876443111 0245689999997653
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++++|+++|++||.|.+|.|++++ +|.++|+|||+|.+.++|.+|++.|||..|+||
T Consensus 197 -~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 254 (284)
T 3smz_A 197 -NDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS 254 (284)
T ss_dssp -CCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred -CCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Confidence 2689999999999999999999996 699999999999999999999999999999985
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=4.7e-30 Score=208.14 Aligned_cols=208 Identities=16% Similarity=0.199 Sum_probs=140.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----hcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVE----RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
.+..++++|||+|||.++|+++|+ ++|++| .|..|.|++ +++++|||||+|.+.++|.+||+ +++ ..|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g 79 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG-FPFYD 79 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC-CeeCC
Confidence 356778999999999999999976 899999 999999875 57889999999999999999998 999 99999
Q ss_pred eEeEEEecCCCCCC---CCCCCCCCCC-----------------------CCCCCCCCCCC-------------------
Q psy1680 82 LQVRLDIADGKRND---NKGGFNNKQN-----------------------RGGGSGGMGGN------------------- 116 (227)
Q Consensus 82 ~~l~v~~~~~~~~~---~~~~~~~~~~-----------------------~~~~~~~~~~~------------------- 116 (227)
+.|.|.++..+... ..+....+.. ...+.+.....
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 99999998765421 0000000000 00000000000
Q ss_pred --CCCCCCCCCCCCCCCCCC-----CCCCCCCCC---CCCCCCCCCCCCCcceeccCCCCCCCChhhHHhhhccccceEE
Q psy1680 117 --KYNQHQGGSFNRDNMRNN-----SRGGGASSG---GGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVS 186 (227)
Q Consensus 117 --~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~ 186 (227)
.+....+... ....... ......... .........++..+|||+|||..+ ++++|+++|++||.|.+
T Consensus 160 ~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~--~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 160 QPPYMPPPGMIP-PPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEET--NELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCC-CCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcC--CHHHHHHHHHhcCCeEE
Confidence 0000000000 0000000 000000000 000112234567889999997655 78999999999999999
Q ss_pred EEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc-CC
Q psy1680 187 VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD-GL 227 (227)
Q Consensus 187 v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~-gr 227 (227)
|+|++++ +|||||+|.+.++|.+|++.|||..|+ ||
T Consensus 237 v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 273 (282)
T 3pgw_A 237 VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNN 273 (282)
T ss_pred EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCC
Confidence 9999764 589999999999999999999999998 75
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.3e-30 Score=204.11 Aligned_cols=184 Identities=15% Similarity=0.130 Sum_probs=137.6
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
+..++++|||+|||+ ++++++|+++|++| .|..|.|++++ +|||||+|.+.++|.+||+ +++ ..+.|+.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g-~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNG-HKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTT-CBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCC-CeECCeEEE
Confidence 456789999999999 99999999999999 99999999875 7899999999999999998 999 999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCC
Q psy1680 86 LDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGP 165 (227)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 165 (227)
|.++.++............. ....+..... .+.... .........++..+|||+|||.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~l~V~nlp~ 161 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQG--------LTKDYGNSPL---HRFKKP-----------GSKNFQNIFPPSATLHLSNIPP 161 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTT--------TEEECTTCSS---CCCCST-----------TSGGGTTCCCSCSEEEEECCCT
T ss_pred EEEecCccccCccccccccc--------cccccccCcc---cccCCc-----------cccccccCCCCCCEEEEeCCCc
Confidence 99998654321100000000 0000000000 000000 0000011124678999999976
Q ss_pred CCCCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc-CC
Q psy1680 166 NRSNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD-GL 227 (227)
Q Consensus 166 ~~~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~-gr 227 (227)
.. ++++|+++|++|| .|..|+|+++ ++|+|||+|.+.++|.+|++.|||..|+ ||
T Consensus 162 ~~--t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 218 (229)
T 2adc_A 162 SV--SEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENH 218 (229)
T ss_dssp TC--CHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cC--CHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCC
Confidence 55 7899999999999 9999999764 2699999999999999999999999998 75
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.9e-30 Score=199.91 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=135.8
Q ss_pred CCceEEEcCCCC-CCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 12 PPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 12 ~~~~l~V~nLp~-~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
.+++|||+|||+ ++++++|+++|++| .|..|.+++++ +|||||+|.+.++|.+|++ +++ ..+.|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNG-HKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTT-CCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC-CeecCeEEEEEE
Confidence 368999999999 99999999999999 99999998774 7899999999999999999 999 999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCC
Q psy1680 89 ADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRS 168 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 168 (227)
+.+.............. ....+.... ..+.... .........+++.+|||+|||...
T Consensus 76 a~~~~~~~~~~~~~~~~--------~~~~~~~~~---~~r~~~~-----------~~~~~~~~~~~~~~l~v~nl~~~~- 132 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQG--------LTKDYGNSP---LHRFKKP-----------GSKNFQNIFPPSATLHLSNIPPSV- 132 (198)
T ss_dssp CCCCSCCCSSSSSSSSS--------CEEESSCCC---TTSSSSC-----------CCCCCSCCCCCCCEEEECCCCTTC-
T ss_pred ecCCCcCCCCcCCcccc--------ccccccCCc---hhhccCc-----------cccccccCCCCccEEEEeCCCCCC-
Confidence 88654322100000000 000000000 0000000 000011122567899999997655
Q ss_pred CChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc-CC
Q psy1680 169 NSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD-GL 227 (227)
Q Consensus 169 ~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~-gr 227 (227)
++++|+++|++|| .|.+|+|+++. +|+|||+|.+.++|.+|++.|||..|+ ||
T Consensus 133 -~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 187 (198)
T 1qm9_A 133 -SEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENH 187 (198)
T ss_dssp -CHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCC
T ss_pred -CHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Confidence 7899999999999 99999997753 699999999999999999999999998 75
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.2e-30 Score=212.56 Aligned_cols=163 Identities=14% Similarity=0.196 Sum_probs=133.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
...++|||+|||..+++++|+++|++| .|..+.++.++. +.++|||||+|.+.++|.+|+. +++ ..+.|+.|.|.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 192 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNG-LKIEGYTLVTK 192 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEE
Confidence 357899999999999999999999999 789999998865 7889999999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
++.++...... .....+..+|||+|||...
T Consensus 193 ~a~~~~~~~~~--------------------------------------------------~~~~~~~~~l~v~nlp~~~ 222 (292)
T 2ghp_A 193 VSNPLEKSKRT--------------------------------------------------DSATLEGREIMIRNLSTEL 222 (292)
T ss_dssp ECCCC-----------------------------------------------------------CCTTTEEEEEEECTTT
T ss_pred ECCCCcccccc--------------------------------------------------cccCCCCceEEEECCCccc
Confidence 98865542210 0001356789999997661
Q ss_pred CCChhhHHhhhccccceEEEEEeecCC-CCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKE-TDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~-t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++++|+++|++||.|..|+|+++.. ||.++|||||+|.+.++|.+|+ .|||..|+||
T Consensus 223 -~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~ 281 (292)
T 2ghp_A 223 -LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNR 281 (292)
T ss_dssp -CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTE
T ss_pred -CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCc
Confidence 37899999999999999999999977 6999999999999999999999 9999999985
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=5.5e-30 Score=205.73 Aligned_cols=139 Identities=25% Similarity=0.325 Sum_probs=127.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
....++|||+|||+++|+++|+++|++| .|..|.|.++ +|||||+|.+.++|.+|+. +++ ..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDG-TILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCC-cEECCceeEee
Confidence 4556899999999999999999999999 9999999654 7899999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
++.+ +.+|||+|||..+
T Consensus 92 ~a~~---------------------------------------------------------------~~~l~v~nl~~~~ 108 (261)
T 3sde_A 92 FATH---------------------------------------------------------------GAALTVKNLSPVV 108 (261)
T ss_dssp ECCC---------------------------------------------------------------SSEEEEESCCTTC
T ss_pred eccc---------------------------------------------------------------CCcccccCCCCCC
Confidence 9752 3369999997655
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCC
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 221 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g 221 (227)
++++|+++|+.||.|..|.|++| .+|.++|||||+|.+.++|.+|++.||+
T Consensus 109 --t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 109 --SNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp --CHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 78999999999999999999999 5799999999999999999999999943
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.1e-29 Score=206.16 Aligned_cols=145 Identities=15% Similarity=0.207 Sum_probs=132.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
.+.++|||+|||.++|+++|+++|++|.|..+.+ ++++|||||+|.+.++|.+|++ +++ ..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQ-SRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCC-CeeCCeEEEEEec
Confidence 4578999999999999999999999998777777 4458999999999999999998 999 9999999999874
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCC
Q psy1680 90 DGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSN 169 (227)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 169 (227)
. +..+|||+|||...
T Consensus 93 ~---------------------------------------------------------------~~~~l~v~nlp~~~-- 107 (284)
T 3smz_A 93 P---------------------------------------------------------------TDALLCVANLPPSL-- 107 (284)
T ss_dssp C---------------------------------------------------------------CSCEEEEESCCTTC--
T ss_pred C---------------------------------------------------------------CCCEEEEcCCCCcC--
Confidence 2 23479999997665
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|++.|+|..|+||
T Consensus 108 t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 108 TQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 7899999999999999999999999999999999999999999999999999999885
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.3e-29 Score=206.44 Aligned_cols=149 Identities=17% Similarity=0.259 Sum_probs=127.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~ 87 (227)
...+.++|||+|||+++|+++|+++|+.| .|..|.|+.++.+ ++|||||+|.+.++|.+||++++ ..+.|+.|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~-~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTH-KVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTT-CEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCC-cEeCCcEEEEE
Confidence 35667999999999999999999999999 9999999998643 47999999999999999999999 99999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCC
Q psy1680 88 IADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNR 167 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 167 (227)
++. ..+|||+|||...
T Consensus 114 ~~~----------------------------------------------------------------~~~l~v~nlp~~~ 129 (292)
T 2ghp_A 114 HLT----------------------------------------------------------------ECTLWMTNFPPSY 129 (292)
T ss_dssp ECC----------------------------------------------------------------SCEEEEECCCTTC
T ss_pred ECC----------------------------------------------------------------CCEEEEECCCCCC
Confidence 851 3479999997665
Q ss_pred CCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 168 SNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++++|+++|+.|| .|..|.|++++. +.++|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 130 --t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 187 (292)
T 2ghp_A 130 --TQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY 187 (292)
T ss_dssp --CHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred --CHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 7899999999999 999999999976 88999999999999999999999999999885
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=5.9e-23 Score=152.59 Aligned_cols=138 Identities=16% Similarity=0.113 Sum_probs=100.0
Q ss_pred EEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1680 41 SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYN 119 (227)
Q Consensus 41 ~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (227)
.+.|+.+.. +++|||||+|.+.++|++|++ +++ ....+..+.+...............
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 60 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYAN-DNGVDGEWTYDDATKTFTVTEGSHH------------------ 60 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHH-HHTCCCEEEEETTTTEEEEECCCCC------------------
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcc-cCCCCCcccccCccccccccccccc------------------
Confidence 456666643 689999999999999999997 665 3322222222221111000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCccc
Q psy1680 120 QHQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFK 199 (227)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~ 199 (227)
........+..+|||+|||+.. ++++|+++|+.||.|.+|+|++|+.+|.++
T Consensus 61 --------------------------~~~~~~~~~~~~l~v~nl~~~~--~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~ 112 (158)
T 2kn4_A 61 --------------------------HHHHMDVEGMTSLKVDNLTYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESR 112 (158)
T ss_dssp --------------------------SSCCCCCCBCCEEEEESCCTTC--CHHHHHHHHHHHSCEEEEECCCCSSCTTSC
T ss_pred --------------------------cccccCCCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeecCCCCccc
Confidence 0000011346789999997665 799999999999999999999999999999
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 200 GFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 200 g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|||||+|.+.++|.+|++.|||..|+||
T Consensus 113 g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 113 GFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp CEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 9999999999999999999999999986
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1e-21 Score=138.34 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
.+.+|||+|||+++|+++|+++|++| .|..|.|++++ +.++|||||+|.+.++|++||+ +++ ..|+|+.|.|.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~-~~~~g~~i~V~~a 80 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRF 80 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEEES
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEEC
Confidence 35789999999999999999999999 99999999985 4579999999999999999998 999 9999999999998
Q ss_pred CCCCC
Q psy1680 90 DGKRN 94 (227)
Q Consensus 90 ~~~~~ 94 (227)
.++..
T Consensus 81 ~~~~~ 85 (115)
T 4f25_A 81 KSRKE 85 (115)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 86554
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=132.29 Aligned_cols=80 Identities=20% Similarity=0.412 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
...++|||+|||+++|+++|+++|++| .|..+.|++++.+++++|||||+|.+.++|.+|++ +|+ ..|+|++|+|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng-~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG-LRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEE
Confidence 446899999999999999999999999 99999999999999999999999999999999998 999 999999999999
Q ss_pred cCC
Q psy1680 89 ADG 91 (227)
Q Consensus 89 ~~~ 91 (227)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=4.7e-21 Score=141.10 Aligned_cols=127 Identities=20% Similarity=0.175 Sum_probs=99.9
Q ss_pred CCeecEEEEEeCCHHHHHHHHH-h-CCCceeCCeEeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1680 51 DRFKGFCYVEFVDVENLRQALL-K-DGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQHQGGSFNR 128 (227)
Q Consensus 51 ~~~~g~afv~f~~~~~a~~al~-~-~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (227)
...+|+++|+|.+.++|++|++ + ++ ..++| .+.+.++..+.......... ..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng-~~~~G-~~~~~~a~~~~~~~~~~~~~------------~~------------ 63 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYAND-NGVDG-EWTYDDATKTFTVTEGSHHH------------HH------------ 63 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHH-HTCCC-EEEEETTTTEEEEECSSSSC------------CC------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcC-CCCCC-ceecccccCccccccccccc------------cc------------
Confidence 4668999999999999999998 8 99 99999 99999876533211000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcC
Q psy1680 129 DNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
........+..+|||+|||+.. ++++|+++|++||.|.+|+|+++ ++|||||+|.+
T Consensus 64 -----------------~~~~~~~~~~~~l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~ 119 (150)
T 2i2y_A 64 -----------------HMHRDSCPLDCKVYVGNLGNNG--NKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFED 119 (150)
T ss_dssp -----------------CSCSSSSTTSCEEEEESCCSCC--SCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESS
T ss_pred -----------------cccccCCCCCCEEEEeCCCCCC--CHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECC
Confidence 0001111456799999997665 78999999999999999999987 47999999999
Q ss_pred HHHHHHHHHHcCCccccCC
Q psy1680 209 VENLRQALLKDGRITVDGL 227 (227)
Q Consensus 209 ~~~a~~Al~~l~g~~i~gr 227 (227)
.++|.+|++.|||..|+||
T Consensus 120 ~~~a~~A~~~l~g~~~~g~ 138 (150)
T 2i2y_A 120 PRDAADAVRELDGRTLCGC 138 (150)
T ss_dssp HHHHHHHHHHHSSSCSSSS
T ss_pred HHHHHHHHHHcCCCEECCe
Confidence 9999999999999999986
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=5.9e-21 Score=130.72 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=67.8
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.+|||+|||+.+ ++++|+++|++||.|.+|+|++|+.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 18 ~gt~lfV~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 18 QGTNLIVNYLPQNM--TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CCSEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45689999997665 7999999999999999999999999999999999999999999999999999999986
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=1.2e-19 Score=127.52 Aligned_cols=90 Identities=28% Similarity=0.425 Sum_probs=83.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
...+..+.++|||+|||..+++++|+++|++| .|..|.|++++.++.++|||||+|.+.++|++||+ +++ ..|+|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~ 86 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWLGGRQ 86 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT-CEETTEE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCEE
Confidence 34456778999999999999999999999999 99999999998899999999999999999999998 999 9999999
Q ss_pred eEEEecCCCCCCC
Q psy1680 84 VRLDIADGKRNDN 96 (227)
Q Consensus 84 l~v~~~~~~~~~~ 96 (227)
|.|.++.++....
T Consensus 87 l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 87 IRTNWATRKPPAP 99 (115)
T ss_dssp CEEEESSCCCCCS
T ss_pred EEEEEccCCCCCC
Confidence 9999998876543
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=128.48 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..+.++|||+|||+++++++|+++|++| .|..|.|++|+.|++++|||||+|.+.++|++||+ +|+ ..+.|+.|.|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng-~~~~gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL-TSVMGNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 3567899999999999999999999999 99999999999999999999999999999999999 999 99999999999
Q ss_pred ecCCCC
Q psy1680 88 IADGKR 93 (227)
Q Consensus 88 ~~~~~~ 93 (227)
++....
T Consensus 82 ~a~~~~ 87 (110)
T 3s8s_A 82 LDIKGQ 87 (110)
T ss_dssp ECSTTH
T ss_pred ECCCCc
Confidence 987543
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-19 Score=123.88 Aligned_cols=88 Identities=25% Similarity=0.371 Sum_probs=82.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
.....+.++|||+|||..+++++|+++|++| .|..|.|+.++.++.++|||||+|.+.++|.+||+ +++ ..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 87 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG-FGYDHLIL 87 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT-CEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC-CeeCCcEE
Confidence 3456778999999999999999999999999 99999999999999999999999999999999999 999 99999999
Q ss_pred EEEecCCCCCC
Q psy1680 85 RLDIADGKRND 95 (227)
Q Consensus 85 ~v~~~~~~~~~ 95 (227)
.|.++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999877653
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=131.08 Aligned_cols=73 Identities=12% Similarity=-0.016 Sum_probs=68.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||+.+ ++++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|.+|++.|||..|+||
T Consensus 4 ~p~~~lfV~nL~~~~--te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 4 IPLKEVTFARLNDNV--RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp SCCCEEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCCCC--CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 467899999997655 7999999999999999999999999999999999999999999999999999999986
No 30
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=2.4e-19 Score=123.55 Aligned_cols=90 Identities=54% Similarity=0.993 Sum_probs=83.6
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEe
Q psy1680 5 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 84 (227)
Q Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l 84 (227)
..+.+..+.++|||+|||.++++++|+++|++|.|..|.|++++.+++++|||||+|.+.++|.+||.+++ ..|.|+.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l 85 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDG-ALLGDRSL 85 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTT-CEETTEEC
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCC-CeECCeEE
Confidence 45566788899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEecCCCCCC
Q psy1680 85 RLDIADGKRND 95 (227)
Q Consensus 85 ~v~~~~~~~~~ 95 (227)
.|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dng_A 86 RVDIAEGRKQD 96 (103)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEecCCCCC
Confidence 99999876653
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=122.70 Aligned_cols=85 Identities=27% Similarity=0.440 Sum_probs=80.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..++++|||+|||..+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+||+ +++ ..+.|+.|+|.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 80 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVG 80 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT-CCSSSSCCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEE
Confidence 4578999999999999999999999999 99999999999999999999999999999999999 999 99999999999
Q ss_pred ecCCCCCC
Q psy1680 88 IADGKRND 95 (227)
Q Consensus 88 ~~~~~~~~ 95 (227)
++.++...
T Consensus 81 ~a~~~~~~ 88 (95)
T 2dnz_A 81 HVTERLDG 88 (95)
T ss_dssp ESSCCCCC
T ss_pred EcccccCC
Confidence 99877653
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=122.78 Aligned_cols=88 Identities=20% Similarity=0.386 Sum_probs=82.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
.+..+.++|||+|||..+++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|.+||++++ ..|+|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~-~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF-HDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCC-CBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCC-CEECCeEEEE
Confidence 355778999999999999999999999999 99999999999999999999999999999999999999 9999999999
Q ss_pred EecCCCCCCC
Q psy1680 87 DIADGKRNDN 96 (227)
Q Consensus 87 ~~~~~~~~~~ 96 (227)
.++.++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9998876543
No 33
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1.8e-19 Score=119.12 Aligned_cols=80 Identities=20% Similarity=0.403 Sum_probs=76.6
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~ 90 (227)
+++|||+|||.++++++|+++|++| .|..+.+++++.+++++|||||+|.+.++|.+|++ +++ ..++|+.|+|.++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG-QDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC-CeeCCcEEEEEecC
Confidence 4689999999999999999999999 99999999999999999999999999999999999 999 99999999999998
Q ss_pred CCC
Q psy1680 91 GKR 93 (227)
Q Consensus 91 ~~~ 93 (227)
+++
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=121.42 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
+..+.++|||+|||.++++++|+++|++| .|..+.++.++.+++++|||||+|.+.++|.+|++ +++ ..++|+.|.|
T Consensus 2 p~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 80 (87)
T 3bs9_A 2 PLGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWLGGRQIRT 80 (87)
T ss_dssp ----CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEE
T ss_pred CCCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCeEEEE
Confidence 34678999999999999999999999999 99999999999899999999999999999999999 999 9999999999
Q ss_pred EecCCC
Q psy1680 87 DIADGK 92 (227)
Q Consensus 87 ~~~~~~ 92 (227)
.++.++
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999765
No 35
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=124.60 Aligned_cols=89 Identities=22% Similarity=0.375 Sum_probs=82.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+.+..+.++|||+|||..+++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|.+||+ +++ ..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 87 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM-IKLYGKPI 87 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS-CBCSSCBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC-CeECCeEE
Confidence 3456778999999999999999999999999 99999999999899999999999999999999999 999 99999999
Q ss_pred EEEecCCCCCCC
Q psy1680 85 RLDIADGKRNDN 96 (227)
Q Consensus 85 ~v~~~~~~~~~~ 96 (227)
.|.++.++....
T Consensus 88 ~v~~a~~~~~~~ 99 (105)
T 1x5u_A 88 RVNKASAHNKNL 99 (105)
T ss_dssp EEEETTTTSCCC
T ss_pred EEEECCCCCcCC
Confidence 999998876543
No 36
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=126.94 Aligned_cols=81 Identities=21% Similarity=0.432 Sum_probs=75.1
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-h-CCCceeCCeEeEEEe
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K-DGRITVDGLQVRLDI 88 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~-~~~~~~~g~~l~v~~ 88 (227)
+++|||+|||+++|+++|+++|++| .|.+|.|++++.++.++|||||+|.+.++|.+||+ + ++ ..++|++|.|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~-~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS-LNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE-EEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC-eEECCEEEEEEE
Confidence 5789999999999999999999999 58999999999999999999999999999999998 5 45 789999999999
Q ss_pred cCCCCC
Q psy1680 89 ADGKRN 94 (227)
Q Consensus 89 ~~~~~~ 94 (227)
+.++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987664
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=125.75 Aligned_cols=90 Identities=22% Similarity=0.356 Sum_probs=83.2
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hC------CC
Q psy1680 5 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD------GR 76 (227)
Q Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~------~~ 76 (227)
..+....+.++|||+|||+.+++++|+++|++| .|..|.|++++.++.++|||||+|.+.++|.+||+ ++ +
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~- 85 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG- 85 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC-
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC-
Confidence 344566788999999999999999999999999 99999999999999999999999999999999999 99 9
Q ss_pred ceeCCeEeEEEecCCCCCC
Q psy1680 77 ITVDGLQVRLDIADGKRND 95 (227)
Q Consensus 77 ~~~~g~~l~v~~~~~~~~~ 95 (227)
..|+|+.|.|.++.++...
T Consensus 86 ~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp EESSSCEEEEECCCCCCCC
T ss_pred cEEcCEEEEEEECCCCccC
Confidence 9999999999999877653
No 38
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-18 Score=122.26 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=79.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
..+..+.++|||+|||..+++++|+++|++| .|..|.|+.++ +++++|||||+|.+.++|.+||+ +++ ..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 86 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNG-QLLFDRPM 86 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTT-CEETTEEC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCC-CEeCCCEE
Confidence 3456778999999999999999999999999 99999999987 59999999999999999999999 999 99999999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|.++.....
T Consensus 87 ~v~~a~~~~~ 96 (114)
T 2do0_A 87 HVKMDERALP 96 (114)
T ss_dssp EEEECSCCCC
T ss_pred EEEEcccCCC
Confidence 9999876443
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=123.80 Aligned_cols=89 Identities=20% Similarity=0.324 Sum_probs=82.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
.....+.++|||+|||..+++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|.+||+ +++ ..|+|+.|
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 84 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTI 84 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT-EEETTEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCcEE
Confidence 3456778999999999999999999999999 99999999999999999999999999999999998 999 99999999
Q ss_pred EEEecCCCCCCC
Q psy1680 85 RLDIADGKRNDN 96 (227)
Q Consensus 85 ~v~~~~~~~~~~ 96 (227)
.|.++.++....
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2cqb_A 85 RVNLAKPMRIKE 96 (102)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998876543
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.2e-19 Score=122.55 Aligned_cols=92 Identities=36% Similarity=0.716 Sum_probs=84.1
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCC-CCeecEEEEEeCCHHHHHHHHHhCCCceeCCe
Q psy1680 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFVDVENLRQALLKDGRITVDGL 82 (227)
Q Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~-~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~ 82 (227)
.+.+.+..+.++|||+|||+++++++|+++|++|.|..|.|+.++.+ ++++|||||+|.+.++|.+||.+++ ..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~ 84 (104)
T 1wi8_A 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE-ESLGNK 84 (104)
T ss_dssp CCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGT-CEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCC-CEeCCc
Confidence 34556778889999999999999999999999999999999999887 9999999999999999999999999 999999
Q ss_pred EeEEEecCCCCCCC
Q psy1680 83 QVRLDIADGKRNDN 96 (227)
Q Consensus 83 ~l~v~~~~~~~~~~ 96 (227)
.|.|.++.++....
T Consensus 85 ~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 85 RIRVDVADQAQDKD 98 (104)
T ss_dssp ECEEEECCCCCCCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999998876543
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=7.7e-20 Score=123.97 Aligned_cols=82 Identities=21% Similarity=0.354 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-C--eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCc----eeC
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-K--LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRI----TVD 80 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~--i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~----~~~ 80 (227)
....-.+|||+|||+++|+++|+++|++| . +.+|+|++|+.+++++|||||+|.+.++|.+||+ +|+ . .++
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng-~~~~~~i~ 83 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS-LHPPLKID 83 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS-SSSCEEET
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC-CCCCceEC
Confidence 44566899999999999999999999999 5 6789999999999999999999999999999999 888 5 599
Q ss_pred CeEeEEEecCC
Q psy1680 81 GLQVRLDIADG 91 (227)
Q Consensus 81 g~~l~v~~~~~ 91 (227)
|++|.|.+++.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999864
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.8e-19 Score=121.36 Aligned_cols=85 Identities=22% Similarity=0.429 Sum_probs=79.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
....+.++|||+|||..+++++|+++|++| .|..+.|+.++ +++++|||||+|.+.++|.+||+ +++ ..++|+.|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 89 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDG-MTIKENIIK 89 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT-EESSSCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCC-CEECCEEEE
Confidence 345678999999999999999999999999 99999999997 89999999999999999999998 999 999999999
Q ss_pred EEecCCCCC
Q psy1680 86 LDIADGKRN 94 (227)
Q Consensus 86 v~~~~~~~~ 94 (227)
|.++.++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987654
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.3e-19 Score=121.11 Aligned_cols=89 Identities=21% Similarity=0.343 Sum_probs=81.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe
Q psy1680 5 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 82 (227)
Q Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~ 82 (227)
.......+.++|||+|||+.+|+++|+++|++| .|..|.|+.+ ++.++|||||+|.+.++|.+||+ +++ ..+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~ 83 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG-RIVATK 83 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTT-CBSSSS
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCC-CEeCCc
Confidence 344456788999999999999999999999999 9999999988 78999999999999999999999 999 999999
Q ss_pred EeEEEecCCCCCCC
Q psy1680 83 QVRLDIADGKRNDN 96 (227)
Q Consensus 83 ~l~v~~~~~~~~~~ 96 (227)
.|.|.++.++....
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 84 PLYVALAQRKEERQ 97 (103)
T ss_dssp BCEEEECSSCCCCC
T ss_pred EEEEEEecccccCC
Confidence 99999998876543
No 44
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=121.79 Aligned_cols=86 Identities=24% Similarity=0.311 Sum_probs=80.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||..+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+||+ +++ ..+.|+.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V 82 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG-QVFQGRMLHV 82 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT-EESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC-CEECCcEEEE
Confidence 35678999999999999999999999999 99999999998899999999999999999999997 999 9999999999
Q ss_pred EecCCCCCC
Q psy1680 87 DIADGKRND 95 (227)
Q Consensus 87 ~~~~~~~~~ 95 (227)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999887653
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=124.25 Aligned_cols=88 Identities=24% Similarity=0.361 Sum_probs=81.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
.+....+.++|||+|||..+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|++||+ +++ ..|+|+.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~ 84 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG-AELDGRE 84 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS-CCBTTBC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC-CEECCcE
Confidence 34456778999999999999999999999999 99999999999999999999999999999999999 999 9999999
Q ss_pred eEEEecCCCCC
Q psy1680 84 VRLDIADGKRN 94 (227)
Q Consensus 84 l~v~~~~~~~~ 94 (227)
|.|.++.++..
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dnm_A 85 LRVQVARYGRR 95 (103)
T ss_dssp CEEEECSSCCS
T ss_pred EEEEECCcCCC
Confidence 99999987654
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=123.59 Aligned_cols=89 Identities=29% Similarity=0.530 Sum_probs=82.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
.....+.++|||+|||.++++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+||+ +++ ..|+|+.|
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 84 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG-KSVDGRQI 84 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT-CCTTSCCC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCeEE
Confidence 3456778999999999999999999999999 99999999999999999999999999999999998 999 99999999
Q ss_pred EEEecCCCCCCC
Q psy1680 85 RLDIADGKRNDN 96 (227)
Q Consensus 85 ~v~~~~~~~~~~ 96 (227)
+|.++.++....
T Consensus 85 ~v~~a~~~~~~~ 96 (102)
T 1x5s_A 85 RVDQAGKSSDNR 96 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998776543
No 47
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=3e-19 Score=125.50 Aligned_cols=87 Identities=18% Similarity=0.313 Sum_probs=81.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
....+.++|||+|||.++++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|++||+ +++ ..|+|+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG-FQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC-CEECCEEEE
Confidence 345667999999999999999999999999 99999999999899999999999999999999998 999 999999999
Q ss_pred EEecCCCCCC
Q psy1680 86 LDIADGKRND 95 (227)
Q Consensus 86 v~~~~~~~~~ 95 (227)
|.++.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999877653
No 48
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-18 Score=122.31 Aligned_cols=88 Identities=18% Similarity=0.340 Sum_probs=79.9
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
.+....+.++|||+|||..+++++|+++|++| .|..|.|++++.+++++|||||+|.+.++|++||+ +++ .|.|+.
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~ 87 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRK 87 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEE
Confidence 34456778999999999999999999999999 99999999999999999999999999999999999 675 799999
Q ss_pred eEEEecCCCCCC
Q psy1680 84 VRLDIADGKRND 95 (227)
Q Consensus 84 l~v~~~~~~~~~ 95 (227)
|.|.++.++...
T Consensus 88 l~V~~a~~~~~~ 99 (116)
T 2cqd_A 88 ANVNLAYLGAKP 99 (116)
T ss_dssp CEEEESTTTCCC
T ss_pred EEEEEcccCCCc
Confidence 999999765443
No 49
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=121.57 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=80.1
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEE--------EEEeecCCCCCeecEEEEEeCCHHHHHHHHH-h
Q psy1680 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS--------VRLVKDKETDRFKGFCYVEFVDVENLRQALL-K 73 (227)
Q Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~ 73 (227)
...+.+..+.++|||+|||.++++++|+++|++| .|.. +.|+.++.+++++|||||+|.+.++|.+|++ +
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3455667888999999999999999999999999 9999 9999999999999999999999999999998 9
Q ss_pred CCCceeCCeEeEEEecC
Q psy1680 74 DGRITVDGLQVRLDIAD 90 (227)
Q Consensus 74 ~~~~~~~g~~l~v~~~~ 90 (227)
++ ..+.|+.|+|.+++
T Consensus 84 ~g-~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DG-KEFSGNPIKVSFAT 99 (99)
T ss_dssp TT-CBSSSSBCEEEECC
T ss_pred CC-CEeCCcEEEEEecC
Confidence 99 99999999999874
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=121.56 Aligned_cols=84 Identities=18% Similarity=0.316 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEE-EEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v-~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
.+.++|||+|||..+++++|+++|++| .|..+ .|++++.++.++|||||+|.+.++|.+||+ +++ ..++|+.|.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG-QYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT-CEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 568999999999999999999999999 99999 999998999999999999999999999999 999 99999999999
Q ss_pred ecCCCCCC
Q psy1680 88 IADGKRND 95 (227)
Q Consensus 88 ~~~~~~~~ 95 (227)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876653
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=124.98 Aligned_cols=85 Identities=20% Similarity=0.430 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
+..+.++|||+|||.++++++|+++|++| .|..|.|+.++ +++++|||||+|.+.++|++||+ +++ ..|+|+.|.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g-~~~~g~~l~V 80 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNG-KSLHGKAIKV 80 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSS-CBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC-CEECCEEEEE
Confidence 45678999999999999999999999999 99999999997 89999999999999999999999 999 9999999999
Q ss_pred EecCCCCCC
Q psy1680 87 DIADGKRND 95 (227)
Q Consensus 87 ~~~~~~~~~ 95 (227)
.++.++...
T Consensus 81 ~~a~~~~~~ 89 (116)
T 2fy1_A 81 EQAKKPSFQ 89 (116)
T ss_dssp EECCCSSCS
T ss_pred EECCCCCCC
Confidence 999876643
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=120.53 Aligned_cols=84 Identities=24% Similarity=0.409 Sum_probs=78.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
.....+.++|||+|||..+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+||+ +++ ..++|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 87 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MELDGRRI 87 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCEEE
Confidence 3456778999999999999999999999999 99999999999999999999999999999999999 999 99999999
Q ss_pred EEEecCC
Q psy1680 85 RLDIADG 91 (227)
Q Consensus 85 ~v~~~~~ 91 (227)
.|.+++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 53
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=123.65 Aligned_cols=86 Identities=26% Similarity=0.447 Sum_probs=80.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+....++++|||+|||..+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+|++ +++ ..++|+.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g-~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT-CCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCEEE
Confidence 3456778999999999999999999999999 99999999999999999999999999999999998 999 99999999
Q ss_pred EEEecCCCC
Q psy1680 85 RLDIADGKR 93 (227)
Q Consensus 85 ~v~~~~~~~ 93 (227)
.|.++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998764
No 54
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-19 Score=123.72 Aligned_cols=88 Identities=23% Similarity=0.305 Sum_probs=81.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeE--------EEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCC
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLV--------SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR 76 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~--------~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~ 76 (227)
+....+.++|||+|||..+++++|+++|++| .|. .|.|+.++.+++++|||||+|.+.++|.+||+ +++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g- 87 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG- 87 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT-
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC-
Confidence 3456788999999999999999999999999 998 69999999999999999999999999999999 999
Q ss_pred ceeCCeEeEEEecCCCCCC
Q psy1680 77 ITVDGLQVRLDIADGKRND 95 (227)
Q Consensus 77 ~~~~g~~l~v~~~~~~~~~ 95 (227)
..|.|+.|.|.++.++...
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 9999999999999876653
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=119.58 Aligned_cols=83 Identities=28% Similarity=0.422 Sum_probs=78.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
.....+.++|||+|||..+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+|++ +++ ..+.|+.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 88 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN-KQLFGRVI 88 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT-EEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC-CeeCCcEE
Confidence 3455778999999999999999999999999 99999999999999999999999999999999998 999 99999999
Q ss_pred EEEecC
Q psy1680 85 RLDIAD 90 (227)
Q Consensus 85 ~v~~~~ 90 (227)
+|.+++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999874
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=5.5e-19 Score=117.94 Aligned_cols=81 Identities=23% Similarity=0.385 Sum_probs=76.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
....+.++|||+|||+.+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+||++++ ..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~-~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE-HRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC-EEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC-CEECCEEEEE
Confidence 456778999999999999999999999999 99999999999999999999999999999999999888 8999999999
Q ss_pred Eec
Q psy1680 87 DIA 89 (227)
Q Consensus 87 ~~~ 89 (227)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 57
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=6.5e-19 Score=127.92 Aligned_cols=86 Identities=19% Similarity=0.381 Sum_probs=80.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
.....++|||+|||.++++++|+++|+.| .|..|.|++++.+++++|||||+|.+.++|.+||+ +++ ..|.|+.|.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG-FNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT-EECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEE
Confidence 34566999999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecCCCCCC
Q psy1680 87 DIADGKRND 95 (227)
Q Consensus 87 ~~~~~~~~~ 95 (227)
.++.++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999877654
No 58
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=3.8e-19 Score=120.97 Aligned_cols=82 Identities=18% Similarity=0.415 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
++++|||+|||..+++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+|++ +++ ..++|+.|.|.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG-YQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEEc
Confidence 47899999999999999999999999 99999999999999999999999999999999998 999 9999999999999
Q ss_pred CCCCC
Q psy1680 90 DGKRN 94 (227)
Q Consensus 90 ~~~~~ 94 (227)
.++..
T Consensus 80 ~~~~~ 84 (96)
T 2x1f_A 80 SNSDI 84 (96)
T ss_dssp SCSSG
T ss_pred CCCCC
Confidence 87654
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.9e-19 Score=128.55 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=82.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
.+....+.++|||+|||..+|+++|+++|++| .|..|.|+.++.++.++|||||+|.+.++|.+||+ |++ ..|+|+.
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~ 93 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG-QDLMGQP 93 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT-CBSSSSB
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CeeCCeE
Confidence 34456677899999999999999999999999 99999999999899999999999999999999998 999 9999999
Q ss_pred eEEEecCCCCCC
Q psy1680 84 VRLDIADGKRND 95 (227)
Q Consensus 84 l~v~~~~~~~~~ 95 (227)
|.|.++.++...
T Consensus 94 l~v~~a~~~~~~ 105 (126)
T 3ex7_B 94 ISVDWCFVRGPP 105 (126)
T ss_dssp CEEEESEESSSC
T ss_pred EEEEEecCCCCC
Confidence 999999876554
No 60
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-19 Score=120.79 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeE
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVR 85 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~ 85 (227)
.......++|||+|||+++|+++|+++|++| .+ .|.|++++ +++++|||||+|.+.++|++||++++ ..|+++.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~-~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDK-ANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSS-CCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCC-CeECCcEEE
Confidence 3455677999999999999999999999999 65 99999997 89999999999999999999999999 999999999
Q ss_pred EEecCCCCC
Q psy1680 86 LDIADGKRN 94 (227)
Q Consensus 86 v~~~~~~~~ 94 (227)
|..+.+...
T Consensus 86 V~~~~~~~~ 94 (102)
T 1wez_A 86 LFLNSTAGT 94 (102)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 999876553
No 61
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=3.7e-19 Score=118.19 Aligned_cols=81 Identities=21% Similarity=0.367 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||+++++++|+++|++| .|..+.+++++.+++++|||||+|.+.++|.+|++ +++ ..++|+.|+|
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 81 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIRV 81 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC-CEECCcEEEE
Confidence 35678999999999999999999999999 99999999999999999999999999999999998 999 9999999999
Q ss_pred EecC
Q psy1680 87 DIAD 90 (227)
Q Consensus 87 ~~~~ 90 (227)
.+++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9874
No 62
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-20 Score=126.51 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=64.6
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccc--eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc----cccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTT--LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI----TVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~--i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~----~i~gr 227 (227)
-+||||+|||+.. |+++|+++|++||. |.+|+|++|+.||.++|||||+|.+.++|.+|++.|||. .|+||
T Consensus 9 m~tlfV~nL~~~~--tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHT--VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTC--CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcC--CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 4689999997655 89999999999994 679999999999999999999999999999999999997 48886
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-20 Score=126.78 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=64.7
Q ss_pred CCcceeccCCCCCCCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc-CCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD-GRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l-~g~~i~gr 227 (227)
+++|||+|||+.+ |+++|+++|++|| .|.+|+|++|+.||.++|||||+|.+.++|.+|++.+ ++..|+||
T Consensus 1 S~~i~v~nLp~~~--te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr 73 (91)
T 2lxi_A 1 SNIVMLRMLPQAA--TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ 73 (91)
T ss_dssp CCEEEEETCCSSC--CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE
Confidence 4689999997665 8999999999999 8999999999999999999999999999999999987 56678885
No 64
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.7e-19 Score=121.50 Aligned_cols=89 Identities=22% Similarity=0.381 Sum_probs=82.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeec-CCCCCeecEEEEEeCCHHHHHHHHH-h-CCCceeCC
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKD-KETDRFKGFCYVEFVDVENLRQALL-K-DGRITVDG 81 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~-~~~~~~~g~afv~f~~~~~a~~al~-~-~~~~~~~g 81 (227)
.+....+.++|||+|||..+++++|+++|++| .|..|.|+.+ +.+++++|||||+|.+.++|.+||+ + ++ ..|.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~~g 86 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS-THLYG 86 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC-CBSSS
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC-CeECC
Confidence 34456778999999999999999999999999 9999999998 7889999999999999999999999 8 89 99999
Q ss_pred eEeEEEecCCCCCC
Q psy1680 82 LQVRLDIADGKRND 95 (227)
Q Consensus 82 ~~l~v~~~~~~~~~ 95 (227)
+.|.|.++.++...
T Consensus 87 ~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 87 RRLVLEWADSEVTV 100 (107)
T ss_dssp CBCEEEECCCCCCC
T ss_pred CEEEEEeCCCCCCC
Confidence 99999999887654
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=120.17 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=68.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||... ++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 14 ~~~~~l~V~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSL--TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCTTSEEEESCCTTS--CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCEEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 467899999997655 7999999999999999999999999999999999999999999999999999999885
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=123.31 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||..+++++|+++|++| .|..|.|+.++.++.++|||||+|.+.++|.+||+ +++ ..++|+.|.|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG-QDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT-CBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC-CEECCcEEEE
Confidence 34567899999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecCCCC
Q psy1680 87 DIADGKR 93 (227)
Q Consensus 87 ~~~~~~~ 93 (227)
.++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9997654
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=3.7e-19 Score=124.06 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=81.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
.+....+.++|||+|||..+++++|+++|++| .|..+.|+.++.++.++|||||+|.+.++|.+||. +++ ..|+|+.
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~ 97 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG-AEIMGQT 97 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT-CEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCcE
Confidence 33445677999999999999999999999999 99999999999999999999999999999999999 999 9999999
Q ss_pred eEEEecCCCCC
Q psy1680 84 VRLDIADGKRN 94 (227)
Q Consensus 84 l~v~~~~~~~~ 94 (227)
|.|.++.++..
T Consensus 98 l~V~~a~~~~~ 108 (110)
T 1oo0_B 98 IQVDWCFVKGP 108 (110)
T ss_dssp CEEEESEESSC
T ss_pred EEEEEcccCCC
Confidence 99999987553
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=120.33 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCC---CCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKE---TDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~---~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.+.++|||+|||.++++++|+++|++| .|..|.|+.++. +++++|||||+|.+.++|.+||+ |++ ..|+|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG-HTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT-CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC-CeeCCeEEE
Confidence 567999999999999999999999999 999999999876 66999999999999999999999 999 999999999
Q ss_pred EEecCCCCCC
Q psy1680 86 LDIADGKRND 95 (227)
Q Consensus 86 v~~~~~~~~~ 95 (227)
|.++.++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876653
No 69
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=1e-18 Score=129.42 Aligned_cols=87 Identities=23% Similarity=0.384 Sum_probs=81.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||..+|+++|+++|++| .|..|.|+.++.++.++|||||+|.+.++|++||+ |++ ..|+|+.|.|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING-TRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT-SEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEE
Confidence 34578999999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecCCCCCCC
Q psy1680 87 DIADGKRNDN 96 (227)
Q Consensus 87 ~~~~~~~~~~ 96 (227)
.++.++....
T Consensus 114 ~~a~~~~~~~ 123 (156)
T 1h2v_Z 114 DWDAGFKEGR 123 (156)
T ss_dssp EEESCCCTTC
T ss_pred EECCCCCCcC
Confidence 9998766543
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.7e-19 Score=121.48 Aligned_cols=85 Identities=29% Similarity=0.468 Sum_probs=79.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccC-C-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCce-eCCeEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPE-Q-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRIT-VDGLQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~-~~g~~l 84 (227)
+..+.++|||+|||.++|+++|+++|++ | .|..|.|+.++ +++++|||||+|.+.++|.+||+ +++ .. ++|+.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG-AVGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTT-CCSSSSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccC-CcccCCEeE
Confidence 4567899999999999999999999999 9 99999999998 89999999999999999999999 999 88 999999
Q ss_pred EEEecCCCCCC
Q psy1680 85 RLDIADGKRND 95 (227)
Q Consensus 85 ~v~~~~~~~~~ 95 (227)
.|.++.++...
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99999876653
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=121.81 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=82.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeE
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVR 85 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~ 85 (227)
.....+.++|||+|||+.+++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|.+||+.++ ..|+|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP-HTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCS-EEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCC-CeECCEEEE
Confidence 3456778999999999999999999999999 99999999999999999999999999999999999888 999999999
Q ss_pred EEecCCCCCCC
Q psy1680 86 LDIADGKRNDN 96 (227)
Q Consensus 86 v~~~~~~~~~~ 96 (227)
|.++.++....
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99998776543
No 72
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=9.1e-20 Score=125.05 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=67.4
Q ss_pred CCCcceeccCCCCC----CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC-C
Q psy1680 154 EGPGGFRNNNGPNR----SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG-L 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~----~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g-r 227 (227)
.+++|||+|||... +.++++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|.+|++.|||..|+| |
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 46789999997500 44789999999999999999999999999999999999999999999999999999998 5
No 73
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=6.2e-19 Score=122.07 Aligned_cols=88 Identities=18% Similarity=0.352 Sum_probs=81.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCcee---CC
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV---DG 81 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~---~g 81 (227)
+.+..+.++|||+|||.++++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|.+||+ +++ ..+ .|
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~~~~g 85 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE-QKTLPGMN 85 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT-TCCCTTCS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC-CcccCCCC
Confidence 4456778999999999999999999999999 99999999999999999999999999999999999 999 887 89
Q ss_pred eEeEEEecCCCCCC
Q psy1680 82 LQVRLDIADGKRND 95 (227)
Q Consensus 82 ~~l~v~~~~~~~~~ 95 (227)
+.|.|.++.++...
T Consensus 86 ~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 86 RPIQVKPADSESRG 99 (106)
T ss_dssp SCCEEEECCCCSCC
T ss_pred ceEEEEECCccccc
Confidence 99999999876653
No 74
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=1.7e-18 Score=119.62 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC---eE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG---LQ 83 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g---~~ 83 (227)
...+.++|||+|||..+++++|+++|++| .|..|.|+.++ +++++|||||+|.+.++|.+||+ +++ ..+.+ +.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~gg~~~~ 88 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHG-SQTMPGASSS 88 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSS-CCCCTTCSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcC-CccCCCCCcc
Confidence 34668999999999999999999999999 99999999997 79999999999999999999999 999 99888 99
Q ss_pred eEEEecCCCCCC
Q psy1680 84 VRLDIADGKRND 95 (227)
Q Consensus 84 l~v~~~~~~~~~ 95 (227)
|.|.++.++...
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999877654
No 75
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-18 Score=117.94 Aligned_cols=86 Identities=31% Similarity=0.451 Sum_probs=77.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.....+.++|||+|||.++++++|+++|+.| ..+.++.++.+++++|||||+|.+.++|.+||+ +++ ..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC-CeECCeEEE
Confidence 3456778999999999999999999999987 356778888889999999999999999999999 999 999999999
Q ss_pred EEecCCCCCC
Q psy1680 86 LDIADGKRND 95 (227)
Q Consensus 86 v~~~~~~~~~ 95 (227)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999887653
No 76
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=120.01 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=68.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||... ++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 13 ~~~~~l~v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CGGGCEEEESCCSSC--CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEECCCCCC--CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 567899999997665 7899999999999999999999999999999999999999999999999999999885
No 77
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.9e-19 Score=120.03 Aligned_cols=84 Identities=23% Similarity=0.436 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeE-EEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE--
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ-- 83 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~-~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~-- 83 (227)
...+.++|||+|||+++++++|+++|++| .|. .+.|++++.+++++|||||+|.+.++|++|++ +|+ ..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~ 83 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING-KPLPGATPA 83 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT-SEESSCSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC-CccCCCCcc
Confidence 45678999999999999999999999999 999 99999999999999999999999999999999 999 9999999
Q ss_pred --eEEEecCCCC
Q psy1680 84 --VRLDIADGKR 93 (227)
Q Consensus 84 --l~v~~~~~~~ 93 (227)
|+|.++.+..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987654
No 78
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.4e-19 Score=121.70 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=63.9
Q ss_pred cceeccCCCCCCCChhhHHhhhcccc--ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVT--TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g--~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+|||+|||... ++++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|||..|+||
T Consensus 3 ~l~V~nL~~~~--t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 3 ALYIGNLTWWT--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp -CEEESCCTTC--CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 79999997655 8999999999999 999999999999999999999999999999999999999999997
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=119.52 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=67.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|+|++++ ++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 15 ~~~~~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 15 LEKHKLFISGLPFSC--TKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CCCSCEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 567899999997655 799999999999999999999998 899999999999999999999999999999986
No 80
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-19 Score=127.19 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-Ce-EEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KL-VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i-~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||+++|+++|+++|++| .| ..|.|+.++ +++++|||||+|.+.++|.+||++++ ..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~-~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHR-KKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCS-EEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCC-CccCCeEEEE
Confidence 45667999999999999999999999999 88 889999998 89999999999999999999999999 9999999999
Q ss_pred EecCCCC
Q psy1680 87 DIADGKR 93 (227)
Q Consensus 87 ~~~~~~~ 93 (227)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998654
No 81
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=121.15 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=68.5
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 13 NQDATVYVGGLDEKV--SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CTTTEEEEECCCTTC--CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 467899999997655 7999999999999999999999999999999999999999999999999999999986
No 82
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7e-19 Score=121.19 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=68.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 13 DDNATIRVTNLSEDT--RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp SSSEEEEEESCCTTC--CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 567899999997655 7999999999999999999999999999999999999999999999999999999885
No 83
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-18 Score=116.95 Aligned_cols=87 Identities=21% Similarity=0.381 Sum_probs=78.9
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
......+.++|||+|||..+++++|+++|++| .|..|.|+.++. .++|||||+|.+.++|.+||. +++ ..|+|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~ 84 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHG-TVVEGRK 84 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTT-CEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCC-CEECCEE
Confidence 34456778999999999999999999999999 999999998864 379999999999999999999 999 9999999
Q ss_pred eEEEecCCCCCC
Q psy1680 84 VRLDIADGKRND 95 (227)
Q Consensus 84 l~v~~~~~~~~~ 95 (227)
|.|.++.++...
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cq3_A 85 IEVNNATARVMT 96 (103)
T ss_dssp CEEEECCSSCCC
T ss_pred EEEEEcccCCCC
Confidence 999999887653
No 84
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=119.55 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
......++|||+|||+.+++++|+++|++| .|..+.++.++.+++++|||||+|.+.++|++||+ +++ ..|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~ 88 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND-RPIGSRKVK 88 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT-CEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC-CeeCCeEEE
Confidence 345667999999999999999999999999 99888888888999999999999999999999998 999 999999999
Q ss_pred EEecCCCC
Q psy1680 86 LDIADGKR 93 (227)
Q Consensus 86 v~~~~~~~ 93 (227)
|.++..+.
T Consensus 89 V~~a~~~~ 96 (98)
T 2cqp_A 89 LVLGSGPS 96 (98)
T ss_dssp EEESSCSS
T ss_pred EEEcCCCC
Confidence 99987543
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=124.27 Aligned_cols=85 Identities=21% Similarity=0.385 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
.+.++|||+|||.++++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|.+||+.++ ..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~-~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP-HSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCS-EEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCC-cEECCEEEEEEEC
Confidence 344899999999999999999999999 99999999999999999999999999999999999988 9999999999999
Q ss_pred CCCCCCC
Q psy1680 90 DGKRNDN 96 (227)
Q Consensus 90 ~~~~~~~ 96 (227)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8876543
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=7.3e-19 Score=126.04 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=80.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
....+.++|||+|||..+++++|+++|++| .|..|.|++++.+++++|||||+|.+.++|++||+ +++ ..|+|+.|.
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng-~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT-CCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCEEEE
Confidence 345677999999999999999999999999 99999999999999999999999999999999999 999 999999999
Q ss_pred EEecCCCC
Q psy1680 86 LDIADGKR 93 (227)
Q Consensus 86 v~~~~~~~ 93 (227)
|.++.+++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998765
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=1e-18 Score=125.28 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=69.2
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+..+|||+|||..+ ++++|+++|++||.|..|.|++|+.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 43 ~~~~~~l~V~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCBCEETCTTSC--CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3567899999997665 7999999999999999999999999999999999999999999999999999999986
No 88
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-18 Score=117.14 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=80.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeE
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVR 85 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~ 85 (227)
..+..+.++|||+|||..+++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|.+||. ++ ..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QR-HMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SC-EEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cC-CeeCCeEEE
Confidence 3456778999999999999999999999999 99999999999999999999999999999999998 57 899999999
Q ss_pred EEecCCCCCC
Q psy1680 86 LDIADGKRND 95 (227)
Q Consensus 86 v~~~~~~~~~ 95 (227)
|.++.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999887653
No 89
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=4.7e-19 Score=117.67 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=68.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 5 ~~~~~l~V~nl~~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CCSSEEEEECCCTTC--CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEECCCCCC--CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 467899999997655 7899999999999999999999999999999999999999999999999999999985
No 90
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-18 Score=117.85 Aligned_cols=87 Identities=22% Similarity=0.403 Sum_probs=78.6
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
...+..+.++|||+|||..+++++|+++|++| .|..|.|+.++.+ ++|||||+|.+.++|.+||+ +++ ..|.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~ 84 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNG-RKILGKE 84 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTT-EEETTEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCC-CCcCCCe
Confidence 34456778999999999999999999999999 9999999988654 58999999999999999999 999 9999999
Q ss_pred eEEEecCCCCCC
Q psy1680 84 VRLDIADGKRND 95 (227)
Q Consensus 84 l~v~~~~~~~~~ 95 (227)
|.|.++.++...
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2cqi_A 85 VKVNWATTPSSQ 96 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEECCCCccc
Confidence 999999876653
No 91
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1.2e-18 Score=122.37 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||..+ ++++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 23 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 23 PEGANLFIYHLPQEF--GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp STTCCEEEESCCSSC--CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 456899999997655 7899999999999999999999999999999999999999999999999999999885
No 92
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=117.77 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=64.1
Q ss_pred CcceeccCCCCCCC----ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSN----SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~----~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++|||+|||...++ ++++|+++|++||.|.+|.|+ +.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 57999999876654 679999999999999999988 46799999999999999999999999999999986
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.1e-19 Score=124.61 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCC------CCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 10 TEPPYTAFVGNLPN------GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 10 ~~~~~~l~V~nLp~------~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
...+++|||+|||. ++++++|+++|++| .|..|.|++++.|++++|||||+|.+.++|.+||+ +|+ ..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng-~~~~g 81 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG-KRLDL 81 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CBSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC-cccCC
Confidence 34578999999999 99999999999999 99999999999999999999999999999999998 999 99999
Q ss_pred -eEeEEEecCCC
Q psy1680 82 -LQVRLDIADGK 92 (227)
Q Consensus 82 -~~l~v~~~~~~ 92 (227)
+.|.|.++.++
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999998764
No 94
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=2.1e-18 Score=119.58 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=76.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+....+.++|||+|||+.+++++|+++|++| .|..+.|+.++ +++++|||||+|.+.++|.+||+ |++ ..|.|+.|
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 100 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNG-VPLDGRPM 100 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCC-CEeCCcEE
Confidence 3455778999999999999999999999999 99999999998 89999999999999999999999 999 99999999
Q ss_pred EEEecC
Q psy1680 85 RLDIAD 90 (227)
Q Consensus 85 ~v~~~~ 90 (227)
.|.++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999975
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-19 Score=121.22 Aligned_cols=71 Identities=10% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||+.+ ++++|+++|++||.|.+|+|++|+. |.++|||||+|.+.++|.+|++ ++|..|+||
T Consensus 9 ~~~~~lfV~~Lp~~~--te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr 79 (103)
T 1s79_A 9 VKNRSVYIKGFPTDA--TLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET 79 (103)
T ss_dssp SGGGCEEEECCCTTC--CHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT
T ss_pred CCCCEEEEECCCCCC--CHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence 456899999997665 8999999999999999999999987 9999999999999999999999 899999986
No 96
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=2.1e-18 Score=116.31 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=78.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.+..+.++|||+|||..+++++|+++|++| .|..+.|+++ +++++|||||+|.+.++|.+|++ +++ ..++|+.|.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~ 79 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNG-MKLSGREID 79 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTT-CCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCC-CEECCcEEE
Confidence 456778999999999999999999999999 9999999874 68899999999999999999999 999 999999999
Q ss_pred EEecCCCCCC
Q psy1680 86 LDIADGKRND 95 (227)
Q Consensus 86 v~~~~~~~~~ 95 (227)
|.++.+....
T Consensus 80 v~~a~~~~~~ 89 (92)
T 2dgv_A 80 VRIDRNASGP 89 (92)
T ss_dssp CEECSCCSSC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 97
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7e-19 Score=120.77 Aligned_cols=75 Identities=32% Similarity=0.575 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
++|||+|||.++|+++|+++|++| .|..+.++.+ ++|||||+|.+.++|.+|++ +++ ..++|+.|.|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDG-KVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHH-SCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCC-CeECCcEEEEEEccC
Confidence 589999999999999999999999 9999999876 58999999999999999999 999 999999999999987
Q ss_pred CCC
Q psy1680 92 KRN 94 (227)
Q Consensus 92 ~~~ 94 (227)
+..
T Consensus 75 ~~~ 77 (101)
T 2hvz_A 75 MPR 77 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 98
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-19 Score=118.76 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++.+|||+|||... ++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 3 ~~~~~l~v~nlp~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGT--TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCCEEEEESCCTTC--CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 357799999997655 7999999999999999999999999999999999999999999999999999999875
No 99
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=115.94 Aligned_cols=82 Identities=22% Similarity=0.401 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCC-eecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDR-FKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~-~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
...++|||+|||.++++++|+++|++| .|..+.|+.++.++. ++|||||+|.+.++|.+|++ +|+ ..++|+.|.|.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 80 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG-GQIDGQEITAT 80 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC-CeECCeEEEEE
Confidence 357899999999999999999999999 999999999887665 89999999999999999999 999 99999999999
Q ss_pred ecCCCC
Q psy1680 88 IADGKR 93 (227)
Q Consensus 88 ~~~~~~ 93 (227)
++.+.+
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 997654
No 100
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.8e-19 Score=118.62 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=68.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++.+|||+|||..+ ++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 3 ~~~~~l~v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNI--TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp SCCCEEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 457899999997655 7999999999999999999999999999999999999999999999999999999986
No 101
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=2.1e-19 Score=129.85 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=67.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 45 ~~~~~l~V~nLp~~~--te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 45 EGMTSLKVDNLTYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GGCCCEEEECCCSSC--HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 346789999997655 8999999999999999999999999999999999999999999999999999999986
No 102
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=2.2e-18 Score=119.93 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~ 87 (227)
...+.++|||+|||.++++++|+++|++| .|..|.|++++.+++++|||||+|.+.++|.+||+..+ ..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 35667999999999999999999999999 99999999999999999999999999999999999668 99999999999
Q ss_pred ecCCCCC
Q psy1680 88 IADGKRN 94 (227)
Q Consensus 88 ~~~~~~~ 94 (227)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 103
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=114.52 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
+....++|||+|||+++++++|+++|++|.|..+.|+++ .+++++|||||+|.+.++|.+||.+++ ..|+|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g-~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNR-EYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCS-EEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCC-ceeCCcEEEEEE
Confidence 456779999999999999999999999998889999998 789999999999999999999999999 999999999999
Q ss_pred cCCCC
Q psy1680 89 ADGKR 93 (227)
Q Consensus 89 ~~~~~ 93 (227)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 104
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=120.36 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=68.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 10 ~~~~~l~v~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDT--NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCCSEEEEESCCTTC--CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCEEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 467899999997655 7999999999999999999999999999999999999999999999999999999986
No 105
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=120.72 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=68.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC------CccccC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG------RITVDG 226 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~------g~~i~g 226 (227)
.+..+|||+|||..+ ++++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|.+|++.|| |..|+|
T Consensus 13 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDS--EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCEEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 467899999997665 799999999999999999999999999999999999999999999999999 999988
Q ss_pred C
Q psy1680 227 L 227 (227)
Q Consensus 227 r 227 (227)
+
T Consensus 91 ~ 91 (111)
T 1x4h_A 91 R 91 (111)
T ss_dssp C
T ss_pred E
Confidence 6
No 106
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.5e-18 Score=122.44 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
+..+.++|||+|||.++++++|+++|++| .|..+.|++++.+++++|||||+|.+.++|++||+ +|+ ..|+|+.|+|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG-FQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC-CEETTEECCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC-CEECCEEEEE
Confidence 45667999999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecC
Q psy1680 87 DIAD 90 (227)
Q Consensus 87 ~~~~ 90 (227)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 107
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=6.4e-19 Score=119.86 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
|+++|||+|||... ++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 1 P~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQ--TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp CCSEEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 46789999997655 7999999999999999999999999999999999999999999999999999999985
No 108
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.4e-19 Score=119.88 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=68.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceE-EEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~-~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|. +|+|++++.++.++|||||+|.+.++|++|++.|||..|+|+
T Consensus 7 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 7 GMAASLWMGDLEPYM--DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp SSSSEEEECSCCTTC--CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCccEEEEeCCCCCC--CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 467899999997655 7999999999999999 999999999999999999999999999999999999999986
No 109
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-18 Score=118.03 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=76.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+.+..+.++|||+|||.++|+++|+++|++| .|..|.|+.+ +.+++||||+|.+.++|++||+ +++ ..|+|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 91 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDG-YDYDGYRL 91 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEE
Confidence 3456678999999999999999999999999 9999999654 5678999999999999999998 999 99999999
Q ss_pred EEEecCCCCCC
Q psy1680 85 RLDIADGKRND 95 (227)
Q Consensus 85 ~v~~~~~~~~~ 95 (227)
.|.++.++...
T Consensus 92 ~V~~a~~~~~~ 102 (109)
T 1x4a_A 92 RVEFPRSGRGT 102 (109)
T ss_dssp EEECCCCCCCC
T ss_pred EEEEcccCCCC
Confidence 99999876543
No 110
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=117.29 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+..+|||+|||... ++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 5 ~~~~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEI--TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp -CEEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CceEEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 56789999997655 7999999999999999999999999999999999999999999999999999999985
No 111
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=117.36 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=76.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+.+..+.++|||+|||+.+++++|+++|++| .|..+.|+.++. ++++|||||+|.+.++|.+||+ +++ ..++|+.|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 87 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNG-IRLYGRPI 87 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCC-CEECCCEE
Confidence 3456778999999999999999999999999 999999999976 8999999999999999999999 999 99999999
Q ss_pred EEEecCC
Q psy1680 85 RLDIADG 91 (227)
Q Consensus 85 ~v~~~~~ 91 (227)
.|.+++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999763
No 112
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=2.1e-18 Score=115.48 Aligned_cols=81 Identities=30% Similarity=0.444 Sum_probs=76.6
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~ 90 (227)
..++|||+|||.++++++|+++|++| .|..+.++.++.+++++|||||+|.+.++|++|+.+++ ..+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g-~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDE-SLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTT-CEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCC-CEECCcEEEEEEcc
Confidence 35899999999999999999999999 99999999999899999999999999999999999999 99999999999987
Q ss_pred CCC
Q psy1680 91 GKR 93 (227)
Q Consensus 91 ~~~ 93 (227)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 113
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.3e-19 Score=120.56 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 11 ~~~~~l~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 11 DGMITLKVDNLTYRT--SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp SCCCEEEEESCCTTC--CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCeEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 456899999997655 7999999999999999999999999999999999999999999999999999999985
No 114
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2.8e-18 Score=121.06 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=68.8
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++..+|||+|||... ++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 37 ~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEF--TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCSEEEEEECSCTTC--CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3567899999997655 7999999999999999999999999999999999999999999999999999999985
No 115
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=5.8e-19 Score=126.97 Aligned_cols=85 Identities=25% Similarity=0.397 Sum_probs=78.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEE--EEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCc----ee
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS--VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRI----TV 79 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~--v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~----~~ 79 (227)
....+.++|||+|||+++|+++|+++|++| .|.. |+|++|+.+++++|||||+|.+. +|.+||. +++ . .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g-~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA-LHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT-CCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC-CCCCccC
Confidence 345677999999999999999999999999 9966 99999999999999999999999 9999999 999 8 99
Q ss_pred CCeEeEEEecCCCCC
Q psy1680 80 DGLQVRLDIADGKRN 94 (227)
Q Consensus 80 ~g~~l~v~~~~~~~~ 94 (227)
+|+.|.|.++.++..
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999987654
No 116
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=118.58 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=68.5
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEE--------EEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVS--------VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~--------v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
++..+|||+|||... ++++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENV--TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCSEEEEECCCSSC--CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 567899999997655 79999999999999999 99999999999999999999999999999999999999
Q ss_pred cCC
Q psy1680 225 DGL 227 (227)
Q Consensus 225 ~gr 227 (227)
+||
T Consensus 89 ~g~ 91 (99)
T 2la6_A 89 SGN 91 (99)
T ss_dssp SSS
T ss_pred CCc
Confidence 986
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=118.29 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=67.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|++ |+|..|+|+
T Consensus 8 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNC--GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SSCCEEEEESCCSSC--CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 467899999997655 899999999999999999999999999999999999999999999999 999999986
No 118
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.8e-18 Score=116.69 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=74.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC--
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG-- 81 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g-- 81 (227)
.+.+....++|||+|||+++++++|+++|++| .|..|.|+.+ |||||+|.+.++|++||+ ||+ ..|.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~ 79 (108)
T 1x4c_A 8 GPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN-TKFRSHE 79 (108)
T ss_dssp SCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSS-EEEECTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCc-CCccCCc
Confidence 34456778999999999999999999999999 9999999875 899999999999999999 999 99999
Q ss_pred ---eEeEEEecCCCCCC
Q psy1680 82 ---LQVRLDIADGKRND 95 (227)
Q Consensus 82 ---~~l~v~~~~~~~~~ 95 (227)
+.|.|.++.++...
T Consensus 80 ~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 80 GETAYIRVKVDGPRSPS 96 (108)
T ss_dssp SCEEEEEEEESSCCSCC
T ss_pred CcceEEEEEeCCCCCCC
Confidence 99999999886653
No 119
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=1.7e-18 Score=121.65 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=68.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEI--TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp TTCEEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467899999997655 7999999999999999999999999999999999999999999999999999999885
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-19 Score=116.95 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..+.++|||+|||+++++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+|++ +|+ ..+.|+.|++.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~~~ 80 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA-SGVQAQMAKQS 80 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH-HTCCEESCCSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC-CeEeeEEEeec
Confidence 4578999999999999999999999999 99999999999999999999999999999999999 999 99999998876
Q ss_pred ecC
Q psy1680 88 IAD 90 (227)
Q Consensus 88 ~~~ 90 (227)
++.
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=117.58 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=77.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEE-EEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~ 85 (227)
.+....++|||+|||+++|+++|+++|++| .|.. |.|+.+ .+++++|||||+|.+.++|.+||..++ ..++|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~-~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHK-ERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTT-CCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCc-chhCCcEEE
Confidence 345678999999999999999999999999 8887 888888 789999999999999999999999888 999999999
Q ss_pred EEecCCCCC
Q psy1680 86 LDIADGKRN 94 (227)
Q Consensus 86 v~~~~~~~~ 94 (227)
|.++.++..
T Consensus 88 v~~~~~~~~ 96 (104)
T 1wg5_A 88 IFKSSRAEV 96 (104)
T ss_dssp EEEECTTTS
T ss_pred EEECCHHHH
Confidence 999876553
No 122
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=119.01 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=68.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeec-CCCCcccceEEEEEcCHHHHHHHHHHc-CCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKD-KETDRFKGFCYVEFVDVENLRQALLKD-GRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d-~~t~~~~g~afV~F~~~~~a~~Al~~l-~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|+|+++ +.++.++|||||+|.+.++|.+|++.| ||..|+|+
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 13 QTTSKILVRNIPFQA--NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCCCEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCEEEEeCCCCcC--CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 567899999997655 79999999999999999999999 789999999999999999999999999 99999986
No 123
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=119.31 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=68.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 6 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 6 SGSGRLFVRNLSYTS--SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp CSCEEEEEECCCTTC--CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 457899999997655 7999999999999999999999998999999999999999999999999999999986
No 124
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-19 Score=121.78 Aligned_cols=85 Identities=33% Similarity=0.524 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||..+++++|+++|++| .|..+.|+.++.++.++|||||+|.+.++|.+|++ +++ ..+.|+.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 82 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG-REFSGRALRV 82 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS-BSCSSSCBEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEE
Confidence 34556899999999999999999999999 99999999999999999999999999999999998 999 9999999999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.++.++..
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99987654
No 125
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=1.1e-18 Score=115.37 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=65.9
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+|||+|||... ++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 2 ~~l~V~nlp~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 71 (83)
T 3md1_A 2 FNLFVGDLNVNV--DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 71 (83)
T ss_dssp EEEEEECCCTTC--CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred eEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 479999997655 7999999999999999999999999999999999999999999999999999999885
No 126
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=1.2e-18 Score=118.23 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
.++.++|||+|||+.+++++|+++|++| .|..+.++.++.+++++|||||+|.+.++|++||+ +++ ..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND-RPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC-CeECCcEEEEE
Confidence 4456999999999999999999999999 99889999988999999999999999999999999 999 99999999999
Q ss_pred ecCC
Q psy1680 88 IADG 91 (227)
Q Consensus 88 ~~~~ 91 (227)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 127
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=120.41 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=68.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++.+|||+|||... ++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 24 ~~~~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNI--TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp SSCEEEEEECCCSSC--CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 467899999997655 8999999999999999999999999999999999999999999999999999999986
No 128
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8e-19 Score=120.66 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=68.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 10 ~~~~~l~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCCSCEEEESCCSSC--CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 467899999997655 7999999999999999999999999999999999999999999999999999999885
No 129
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=119.57 Aligned_cols=81 Identities=14% Similarity=0.339 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~ 87 (227)
...+.++|||+|||+++|+++|+++|++| .|..|.|++++. ++++|||||+|.+.++|.+||.+++ ..++|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~-~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSC-CCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCC-CEECCEEEEEE
Confidence 34567999999999999999999999999 999999999987 9999999999999999999999999 99999999999
Q ss_pred ecCC
Q psy1680 88 IADG 91 (227)
Q Consensus 88 ~~~~ 91 (227)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8764
No 130
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=121.62 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=67.2
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+..+|||+|||..+ ++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|++.+++ .|+||
T Consensus 14 ~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHT--TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp SCSSSEEEEECCCSSC--CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 3567899999997655 7999999999999999999999999999999999999999999999999998 78875
No 131
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=118.87 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-C-eEEEEEe-ecCCCCCeecEEEEEeCCHHHHHHHHH-hC--CCceeCCeE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-K-LVSVRLV-KDKETDRFKGFCYVEFVDVENLRQALL-KD--GRITVDGLQ 83 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~-i~~v~i~-~~~~~~~~~g~afv~f~~~~~a~~al~-~~--~~~~~~g~~ 83 (227)
..+.++|||+|||..+++++|+++|++| . |..+.|+ .++.+++++|||||+|.+.++|.+|++ ++ + ..++|+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~-~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR-IQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCC-SCBTTBC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCC-ceecCCe
Confidence 4567999999999999999999999999 7 9999998 788889999999999999999999999 87 6 8999999
Q ss_pred eEEEecCCCCC
Q psy1680 84 VRLDIADGKRN 94 (227)
Q Consensus 84 l~v~~~~~~~~ 94 (227)
|.|.++.++..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987665
No 132
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=115.92 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----hcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVE----RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 82 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~ 82 (227)
+....++|||+|||+.+++++|+ ++|++| .|..|.|+.++.+ +|||||+|.+.++|.+||+ +|+ ..++|+
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g-~~~~gr 80 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHR-YKIGSK 80 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTT-EEETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCC-CEECCe
Confidence 44567899999999999999999 999999 9999999998765 7899999999999999999 999 999999
Q ss_pred EeEEEecCCCCC
Q psy1680 83 QVRLDIADGKRN 94 (227)
Q Consensus 83 ~l~v~~~~~~~~ 94 (227)
.|+|.++.++..
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
No 133
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.1e-18 Score=117.46 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=78.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHH---hcccCC-CeEEEEEeecCCCC---CeecEEEEEeCCHHHHHHHHH-hCCCce
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVE---RFFPEQ-KLVSVRLVKDKETD---RFKGFCYVEFVDVENLRQALL-KDGRIT 78 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~---~~f~~~-~i~~v~i~~~~~~~---~~~g~afv~f~~~~~a~~al~-~~~~~~ 78 (227)
.......++|||+|||+++++++|+ ++|++| .|..+.|++++.++ +++|||||+|.+.++|++||+ ||+ ..
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng-~~ 87 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN-VV 87 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT-EE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC-CE
Confidence 3445667999999999999999999 999999 99999999887644 566999999999999999999 999 99
Q ss_pred eCCeEeEEEecCCCCC
Q psy1680 79 VDGLQVRLDIADGKRN 94 (227)
Q Consensus 79 ~~g~~l~v~~~~~~~~ 94 (227)
|+|+.|.|.++.++..
T Consensus 88 ~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 88 VDGRTLKASLGTTKYC 103 (111)
T ss_dssp ETTEEEEEESCCCCSC
T ss_pred ECCEEEEEEecccccc
Confidence 9999999999987763
No 134
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=119.29 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=67.6
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+..+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||+. ++..|+|+
T Consensus 13 ~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWST--TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp SSSSSEECCBSCCTTC--CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 3567899999997655 7999999999999999999999999999999999999999999999999 99999885
No 135
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=119.31 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++.+|||+|||..+ ++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 21 ~~~~~l~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 21 VEGWILFVTGVHEEA--TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp TTBEEEEEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 456789999997655 7999999999999999999999999999999999999999999999999999999986
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=119.08 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
....++|||+|||+++|+++|+++|++|.|..|.|++++. ++++|||||+|.+.++|++||.+++ ..|+|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~-~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNR-MLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTT-EEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCC-CeECCeEEEEEEC
Confidence 3445899999999999999999999999888999999976 9999999999999999999999999 9999999999888
Q ss_pred CCCC
Q psy1680 90 DGKR 93 (227)
Q Consensus 90 ~~~~ 93 (227)
.++.
T Consensus 91 ~~~~ 94 (109)
T 2dnn_A 91 TERQ 94 (109)
T ss_dssp CHHH
T ss_pred Cccc
Confidence 6543
No 137
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=6.1e-19 Score=118.54 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC---CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~---~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
.+|||+|||+++|+++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|++||+ +|+ ..++|+.|.|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g-~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK-RELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG-SCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC-CeeCCEEEEEEEC
Confidence 579999999999999999999999 38899999999999999999999999999999998 999 9999999999999
Q ss_pred CCCCC
Q psy1680 90 DGKRN 94 (227)
Q Consensus 90 ~~~~~ 94 (227)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87654
No 138
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=1.3e-18 Score=122.32 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=63.4
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.+|||+|||+.+ ++++|+++|++||.|.+|+|++|. +.++|||||+|.+.++|.+|++.|+|..|+||
T Consensus 5 ~~~lfV~nLp~~~--te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 5 SGNIFIKNLDKSI--DNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp CCEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEECCCCCCC--CHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4579999997655 899999999999999999999986 56899999999999999999999999999985
No 139
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=117.89 Aligned_cols=72 Identities=21% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||+.. ++++|+++|++||.|.+|.|++++. +.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 14 ~~~~~l~v~nlp~~~--~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 14 EADRTVFVGNLEARV--REEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp TGGGEEEEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEECCCCCC--CHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 467899999997655 7899999999999999999999976 99999999999999999999999999999885
No 140
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=114.24 Aligned_cols=83 Identities=18% Similarity=0.395 Sum_probs=74.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+....+.++|||+|||..+++++|+++|++| .| .++.+ .+++++|||||+|.+.++|++||. +++ ..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 83 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK-REIEGRAI 83 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSS-EEETTEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCC-CEeCCeEE
Confidence 3356678999999999999999999999999 77 55666 678999999999999999999999 999 99999999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|.++.++..
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 141
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=1.6e-18 Score=115.64 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=65.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||+.. ++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++. ++..|+||
T Consensus 9 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~ 80 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDT--SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGR 80 (87)
T ss_dssp SCTTEEEEECCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCE
Confidence 467899999997655 7999999999999999999999999999999999999999999999976 66778775
No 142
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=124.40 Aligned_cols=72 Identities=25% Similarity=0.346 Sum_probs=66.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEE--EEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc----cccC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVS--VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI----TVDG 226 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~--v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~----~i~g 226 (227)
.+.++|||+|||+.+ ++++|+++|++||.|.. |+|++|+.||+++|||||+|.+. +|.+|++.|||. .|+|
T Consensus 21 ~~~~~lfV~nL~~~~--te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHS--TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCCEEEECSCCTTC--CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 567899999997655 78999999999999977 99999999999999999999999 999999999999 9988
Q ss_pred C
Q psy1680 227 L 227 (227)
Q Consensus 227 r 227 (227)
|
T Consensus 98 r 98 (131)
T 2m2b_A 98 K 98 (131)
T ss_dssp C
T ss_pred E
Confidence 6
No 143
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=9.5e-19 Score=113.46 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
+|||+|||+++++++|+++|++| .|..+.++.++.+++++|||||+|.+.++|++|+++++ ..++|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHF-HEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSC-CCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCC-CEECCEEEEEEeC
Confidence 58999999999999999999999 99999999998899999999999999999999999999 9999999999875
No 144
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-17 Score=116.86 Aligned_cols=83 Identities=13% Similarity=0.301 Sum_probs=76.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCcee------
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV------ 79 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~------ 79 (227)
....+.++|||+|||.++++++|+++|++| .|..+.|+.++ ++.++|||||+|.+.++|.+||+ +|+ ..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNG-KFIKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBT-CCCCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCC-CEEcCCccc
Confidence 345677999999999999999999999999 99999999998 89999999999999999999999 999 998
Q ss_pred --CCeEeEEEecCCC
Q psy1680 80 --DGLQVRLDIADGK 92 (227)
Q Consensus 80 --~g~~l~v~~~~~~ 92 (227)
.+++|.|.++.++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999998864
No 145
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.1e-18 Score=116.44 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=66.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||+.+ ++++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGI--DDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SSCCCEEEECCCTTC--CHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 467899999997655 78999999999999999999998 799999999999999999999999999999886
No 146
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=2.2e-18 Score=119.29 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=67.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc---cCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV---DGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i---~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|.+|+|++|+.++.++|||||+|.+.++|.+|++.|||..+ +||
T Consensus 11 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNL--DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp TTCEEEEEESCCTTC--CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 457899999997655 8999999999999999999999999999999999999999999999999999887 654
No 147
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=9.8e-18 Score=119.32 Aligned_cols=85 Identities=21% Similarity=0.330 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||..+++++|+++|++| .|..|.|+.++ +++++|||||+|.+.++|.+|++ +++ ..++|+.|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG-VPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTT-EESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCC-CEECCcEEEE
Confidence 45667999999999999999999999999 99999999998 89999999999999999999999 999 9999999999
Q ss_pred EecCCCCCC
Q psy1680 87 DIADGKRND 95 (227)
Q Consensus 87 ~~~~~~~~~ 95 (227)
.++.+....
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999876543
No 148
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=116.10 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCC-ceeCCeEe
Q psy1680 9 PTEPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~-~~~~g~~l 84 (227)
...++++|||+|||+ .+|+++|+++|++| .|..|.|+++ ++||||+|.+.++|..||+ +++. ..|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 456789999999999 99999999999999 9999999875 5899999999999999998 7751 45999999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|.++..++.
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999986654
No 149
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=1.4e-17 Score=114.60 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||.++|+++|+++|++| .|..|.|+ ++||||+|.+.++|.+||+ |++ ..|.|+.|.|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 77 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNG-KDLEGENIEI 77 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTT-EEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCC-CccCCCEEEE
Confidence 34567999999999999999999999999 99999987 4599999999999999999 999 9999999999
Q ss_pred EecCCCCCCC
Q psy1680 87 DIADGKRNDN 96 (227)
Q Consensus 87 ~~~~~~~~~~ 96 (227)
.++.++....
T Consensus 78 ~~a~~~~~~~ 87 (103)
T 2dgu_A 78 VFAKPPDQKR 87 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEcCCCcccc
Confidence 9998776543
No 150
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=115.25 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCC-ceeCCeE
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQ 83 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~-~~~~g~~ 83 (227)
+....++++|||+|||+.+++++|+++|++| .|..|.|+++ +|||||+|.+.++|.+|++ +++. ..+.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3445778999999999999999999999999 9999998764 7899999999999999998 7651 4599999
Q ss_pred eEEEecCCCCCCC
Q psy1680 84 VRLDIADGKRNDN 96 (227)
Q Consensus 84 l~v~~~~~~~~~~ 96 (227)
|.|.++.++....
T Consensus 83 l~V~~a~~~~~~~ 95 (104)
T 1wex_A 83 AFFNYSTSKRITR 95 (104)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCccccC
Confidence 9999998766543
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=5.4e-18 Score=126.64 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=79.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
....+.++|||+|||+.+++++|+++|++| .|..|.|+.++.++.++|||||+|.+.++|.+||. |++ ..|.|+.|.
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~ 145 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG-AEIMGQTIQ 145 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC-CEECCEEEE
Confidence 345667899999999999999999999999 99999999999999999999999999999999999 999 999999999
Q ss_pred EEecCCCCC
Q psy1680 86 LDIADGKRN 94 (227)
Q Consensus 86 v~~~~~~~~ 94 (227)
|.++.++..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999987654
No 152
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=3.6e-18 Score=117.62 Aligned_cols=71 Identities=35% Similarity=0.559 Sum_probs=65.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.|| |.+|.|++++.++.++|||||+|.+.++|.+|+ .|||..|+||
T Consensus 13 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 13 EPPYTAYVGNLPFNT--VQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp SSCEEEEEESCCTTC--CHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCeEEEEeCCCCCC--CHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 456899999997655 7999999999997 999999999999999999999999999999999 9999999885
No 153
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-18 Score=118.06 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=67.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCC---CCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKE---TDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~---t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||.|..|.|++++. |+.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 3 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFST--TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCCCEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 457799999997655 8999999999999999999999987 679999999999999999999999999999885
No 154
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=6.9e-18 Score=116.54 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=66.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++..+|||+|||..+ ++++|+++|+.||.|..|.|++++ ++.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQ--SEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 467899999997655 799999999999999999999997 69999999999999999999999999999887
No 155
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=118.68 Aligned_cols=73 Identities=11% Similarity=-0.056 Sum_probs=67.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+...+|||+|||..+ ++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 13 ~~~~~l~v~nLp~~~--t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTV--SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp CSSEEEEEESCCTTC--CHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 456789999997655 7999999999999999999999999999999999999999999999999999999985
No 156
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=118.22 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=66.6
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|.+|.|++++ ++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 13 ~~~~~l~V~nlp~~~--~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 13 RLGSTVFVANLDYKV--GWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCSCEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 567899999997655 899999999999999999999997 599999999999999999999999999999885
No 157
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=6.5e-19 Score=119.49 Aligned_cols=73 Identities=11% Similarity=-0.051 Sum_probs=66.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||..+ ++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 85 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTV--SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (95)
T ss_dssp --CEEEEEECCCTTC--CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 356799999997655 8999999999999999999999999999999999999999999999999999999986
No 158
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=117.64 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=65.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCC-CcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKET-DRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t-~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.|| |.+|.|++++.+ +.++|||||+|.+.++|.+|| .|||..|+||
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDV--TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp SSCEEEEEESCCSSC--CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCEEEEeCCCCcC--CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 456899999997655 7999999999999 999999999998 999999999999999999999 9999999885
No 159
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=6.6e-18 Score=119.21 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-C---eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-K---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~---i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l 84 (227)
+....++|||+|||+++|+++|+++|+.| . |..|.|+.++. ++++|||||+|.+.++|++||++++ ..|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g-~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDR-ESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTT-EEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCC-CeECCeEE
Confidence 45667999999999999999999999999 7 89999999977 9999999999999999999999999 99999999
Q ss_pred EEEecCCCC
Q psy1680 85 RLDIADGKR 93 (227)
Q Consensus 85 ~v~~~~~~~ 93 (227)
+|.++..+.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987543
No 160
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=117.12 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=72.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hC--CCceeCCeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD--GRITVDGLQ 83 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~--~~~~~~g~~ 83 (227)
....+.++|||+|||+++|+++|+++|++| .|..|.|+++ +|||||+|.+.++|..|++ ++ + ..|.|++
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~-~~l~Gr~ 83 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVT-PVLRGQP 83 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSC-CEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCC-ceECCEE
Confidence 456788999999999999999999999999 9999999875 7999999999999999998 75 5 7899999
Q ss_pred eEEEecCCCCCC
Q psy1680 84 VRLDIADGKRND 95 (227)
Q Consensus 84 l~v~~~~~~~~~ 95 (227)
|.|.++.++...
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999876543
No 161
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=116.53 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=66.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhcc-ccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcc-ccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTE-VTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT-VDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~-~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~-i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++ ||.|.+|.|++++ ++.++|||||+|.+.++|.+|++.|+|.. |+||
T Consensus 7 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDV--DDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp SCCCCEEEECCCTTC--CHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 456799999997665 79999999999 9999999999998 89999999999999999999999999999 9886
No 162
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.8e-18 Score=124.94 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=80.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+.+..+.++|||+|||..+|+++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|++||+ +++ ..|.|+.|
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g-~~i~g~~l 119 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG-AVLDGREL 119 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT-CCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCEEE
Confidence 3445667899999999999999999999999 99999999998899999999999999999999999 999 99999999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|.++.++..
T Consensus 120 ~V~~a~~~~~ 129 (135)
T 2lea_A 120 RVQMARYGRP 129 (135)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 163
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=122.58 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=77.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
.+....++|||+|||+++|+++|+++|+.| .|..+.++.+..+++++|||||+|.+.++|.+||.+|+ ..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g-~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHK-QYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCS-BCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCC-CeECCcEEEE
Confidence 345677999999999999999999999999 98887777777889999999999999999999999999 9999999999
Q ss_pred EecCCCC
Q psy1680 87 DIADGKR 93 (227)
Q Consensus 87 ~~~~~~~ 93 (227)
.++.++.
T Consensus 99 ~~a~~~~ 105 (124)
T 1wel_A 99 HPITKKG 105 (124)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987643
No 164
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-17 Score=112.05 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-h--CCCceeCCe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K--DGRITVDGL 82 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~--~~~~~~~g~ 82 (227)
.....++++|||+|||+.+++++|+++|++| .|..|.|+++ +|||||+|.+.++|.+|++ + ++ ..+.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~-~~~~Gr 81 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVT-PHLRNQ 81 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSC-CEETTE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCC-ceECCc
Confidence 3456778999999999999999999999999 9999998865 7999999999999999998 5 56 789999
Q ss_pred EeEEEecCCCCCC
Q psy1680 83 QVRLDIADGKRND 95 (227)
Q Consensus 83 ~l~v~~~~~~~~~ 95 (227)
+|.|.++.++...
T Consensus 82 ~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 82 PIYIQYSNHKELK 94 (101)
T ss_dssp ECEEEECSCSSCC
T ss_pred EEEEEEcCcccCc
Confidence 9999999876653
No 165
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-18 Score=118.41 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=67.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEE-EEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v-~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++.+|||+|||..+ ++++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 3 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEI--DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 76 (96)
T ss_dssp SCCCEEEEECCCTTC--CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 356799999997665 799999999999999999 9999999999999999999999999999999999999885
No 166
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=127.25 Aligned_cols=72 Identities=8% Similarity=0.103 Sum_probs=66.6
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhcccc--ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVT--TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g--~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||..+ ++++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|||..|+||
T Consensus 54 ~~~~lfVgnLp~~~--te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 54 RRAAVYVGSFSWWT--TDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp --CEEEEECCCTTC--CHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45789999997655 8999999999999 999999999999999999999999999999999999999999986
No 167
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=3.2e-18 Score=119.25 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=68.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 24 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 24 VEGWILFVTSIHEEA--QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp TTBEEEEEESCCTTC--CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 456789999997655 7899999999999999999999999999999999999999999999999999999885
No 168
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=114.37 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCce--eCCeEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRIT--VDGLQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~--~~g~~l 84 (227)
..+++++|||+|||..+|+++|+++|++| .|..+.++++ +|||||+|.+.++|..|++ +++ .. +.|++|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~-~~~~i~Gr~i 89 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAAD-NQIYIAGHPA 89 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHH-SCEEETTEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcC-CCceeCCcEE
Confidence 45678999999999999999999999999 9999999854 7899999999999999999 887 64 889999
Q ss_pred EEEecCCCC
Q psy1680 85 RLDIADGKR 93 (227)
Q Consensus 85 ~v~~~~~~~ 93 (227)
.|.++++++
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998764
No 169
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=6.2e-18 Score=121.95 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-C---eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-K---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~---i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l 84 (227)
+....++|||+|||+++|+++|+++|++| . |..|.|++++. ++++|||||+|.+.++|++||++++ ..|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g-~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDR-ESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTE-EESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCC-CEECCEEE
Confidence 45667999999999999999999999999 8 88999999987 9999999999999999999999999 99999999
Q ss_pred EEEecCCC
Q psy1680 85 RLDIADGK 92 (227)
Q Consensus 85 ~v~~~~~~ 92 (227)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 170
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=117.25 Aligned_cols=85 Identities=39% Similarity=0.757 Sum_probs=74.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecC-CCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDK-ETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~-~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
.+....++|||+|||.++++++|+++|++|.|..+.|++++ .+++++|||||+|.+.++|.+||.+++ ..|+|+.|.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g-~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE-ESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTT-CCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCC-CEECCeEEEE
Confidence 34577799999999999999999999999998899999987 689999999999999999999999999 9999999999
Q ss_pred EecCCCC
Q psy1680 87 DIADGKR 93 (227)
Q Consensus 87 ~~~~~~~ 93 (227)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997654
No 171
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-18 Score=121.67 Aligned_cols=81 Identities=28% Similarity=0.517 Sum_probs=76.7
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecCC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~~ 91 (227)
.++|||+|||..+++++|+++|++| .|..|.|+.++.+++++|||||+|.+.++|.+||.+++ ..|+|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG-QRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT-EEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC-CEeCCeEEEEEecCC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999 999999999999876
Q ss_pred CCC
Q psy1680 92 KRN 94 (227)
Q Consensus 92 ~~~ 94 (227)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 543
No 172
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=122.14 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=68.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 61 ~~~~~l~v~nlp~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SSCCEEEEECCCTTC--CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCcEEEEEeCCCCC--CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467899999997655 7899999999999999999999999999999999999999999999999999999985
No 173
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-18 Score=119.83 Aligned_cols=72 Identities=26% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.++|||+|||..+ ++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 7 ~~~~l~V~nlp~~~--~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEA--TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTS--CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcC--CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 45799999997655 7999999999999999999999999999999999999999999999999999999986
No 174
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=117.37 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=76.3
Q ss_pred CCCCCCCCceEEEcCCCCCC------CHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCc
Q psy1680 6 KTLPTEPPYTAFVGNLPNGI------TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRI 77 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~------t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~ 77 (227)
.+......++|||+|||+.+ |+++|+++|++| .|..+.|+ +.+|+++|||||+|.+.++|.+||. +|| .
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g-~ 84 (105)
T 2nlw_A 8 PQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG-Y 84 (105)
T ss_dssp CCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSS-E
T ss_pred CCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCC-c
Confidence 34455667999999999999 789999999999 99999988 4678999999999999999999999 999 9
Q ss_pred eeCCe-EeEEEecCCCC
Q psy1680 78 TVDGL-QVRLDIADGKR 93 (227)
Q Consensus 78 ~~~g~-~l~v~~~~~~~ 93 (227)
.|+|+ +|.|.++....
T Consensus 85 ~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp ECSTTCEEEEECSCCCC
T ss_pred ccCCCceEEEEEcchHh
Confidence 99998 99999987654
No 175
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-19 Score=120.93 Aligned_cols=84 Identities=26% Similarity=0.439 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
..+.++|||+|||.++|+++|+++|++| .|.. .++.++.+++++|||||+|.+.++|.+||++++ ..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGG-CCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCC-cEECCcEEEEEE
Confidence 3478999999999999999999999999 8877 677777888999999999999999999999999 999999999999
Q ss_pred cCCCCCC
Q psy1680 89 ADGKRND 95 (227)
Q Consensus 89 ~~~~~~~ 95 (227)
+.++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876653
No 176
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=117.21 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=73.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hC--CCceeCCeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD--GRITVDGLQ 83 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~--~~~~~~g~~ 83 (227)
...+++++|||+|||+++|+++|+++|++| .|..|.|+++ +|||||+|.+.++|.+|++ ++ + ..|.|++
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~-~~l~Gr~ 98 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVT-PVLRGQP 98 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHC-CCBTTBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCC-ceECCeE
Confidence 456778999999999999999999999999 9999999876 7999999999999999998 76 5 6899999
Q ss_pred eEEEecCCCCCC
Q psy1680 84 VRLDIADGKRND 95 (227)
Q Consensus 84 l~v~~~~~~~~~ 95 (227)
|.|.++.++...
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876653
No 177
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=120.04 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.++|||+|||..+ ++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 40 ~~~~~l~V~nLp~~~--~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTV--DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTTSEEEEESCSTTC--CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 456899999997655 7899999999999999999999999999999999999999999999999999999886
No 178
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=1.8e-18 Score=112.18 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=63.8
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+|||+|||+.. ++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|++|++ ++|..|+||
T Consensus 1 ~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~ 68 (75)
T 2mss_A 1 KIFVGGLSVNT--TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK 68 (75)
T ss_dssp CEEEECCCSSC--CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC
T ss_pred CEEEecCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE
Confidence 48999997655 799999999999999999999999999999999999999999999998 999999986
No 179
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=7.9e-18 Score=124.75 Aligned_cols=85 Identities=26% Similarity=0.397 Sum_probs=79.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
.....++|||+|||+++++++|+++|++| .|..+.|+.++.+++++|||||+|.+.++|.+||+ +++ ..|+|+.|.|
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 144 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG-AVLDGRELRV 144 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT-EESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEE
Confidence 34567999999999999999999999999 99999999999999999999999999999999998 999 9999999999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.++.++..
T Consensus 145 ~~a~~~~~ 152 (158)
T 2kn4_A 145 QMARYGRP 152 (158)
T ss_dssp EEECCSSC
T ss_pred EECCCCCC
Confidence 99987654
No 180
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=1.4e-17 Score=118.54 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=76.8
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecCC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~~ 91 (227)
.++|||+|||.++++++|+++|++| .|..|.|+.++.++.++|||||+|.+.++|.+||++++ ..|+|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDE-TVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTT-CEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeECCeEEEEEECCC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999 999999999999876
Q ss_pred CCC
Q psy1680 92 KRN 94 (227)
Q Consensus 92 ~~~ 94 (227)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 181
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=116.70 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=62.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||+.+ ++++|+++|++|| +.+|+|++|+ +++++|||||+|.+.++|++||+ +|+..|+||
T Consensus 13 ~~~~~l~V~nLp~~~--te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 13 TTGHCVHMRGLPYRA--TENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SSSCEEEEESCCTTC--CHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 456789999997655 8999999999999 4599999997 89999999999999999999995 799999986
No 182
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=117.85 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=65.3
Q ss_pred CCCcceeccCCCCCCC----ChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSN----SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~----~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+++|||+|||...+. ++++|+++|++||.|.+|.|+ +.+|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4678999999876644 689999999999999999998 47799999999999999999999999999999986
No 183
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=121.31 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||..+++++|+++|++| .|..+.|++++.+++++|||||+|.+.++|.+|++ +++ ..|+|+.|+|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 137 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIRV 137 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE-EEETTEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC-CEECCEEEEE
Confidence 45678999999999999999999999999 99999999999999999999999999999999998 999 9999999999
Q ss_pred Eec
Q psy1680 87 DIA 89 (227)
Q Consensus 87 ~~~ 89 (227)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 184
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=4.9e-18 Score=126.87 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+.+|+.||.|..|.|++++.+|.++|||||+|.+.++|.+||+.|||..|+|+
T Consensus 70 ~~~~~l~V~nLp~~~--t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 70 VEGWILFVTSIHEEA--QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp C-CEEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 456789999997655 7999999999999999999999999999999999999999999999999999999885
No 185
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=119.19 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=66.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|.+|.|+++. ++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 5 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 5 DHPGKLFIGGLNRET--NEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp CSCCEEEEECCTTTC--CHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 356789999997655 899999999999999999999997 899999999999999999999999999999986
No 186
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=114.35 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=66.4
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCc-ccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDR-FKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~-~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.+|||+|||... ++++|+++|++||.|.+|.|++++.++. ++|||||+|.+.++|.+|++.|||..|+||
T Consensus 3 ~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 3 KPTKVHIGRLTRNV--TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp CCCEEEEECCCTTC--CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 45689999997655 7999999999999999999999988776 999999999999999999999999999985
No 187
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=5.1e-18 Score=120.63 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCCCeE--EEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLV--SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~--~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v 86 (227)
+....++|||+|||+++|+++|+++|++|.|. .|.|++++. |+++|||||+|.+.++|++||++++ ..|+|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~-~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHK-ERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTT-CCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCC-CEECCEEEEE
Confidence 34567899999999999999999999999666 899999977 9999999999999999999999888 9999999999
Q ss_pred EecCCC
Q psy1680 87 DIADGK 92 (227)
Q Consensus 87 ~~~~~~ 92 (227)
..+.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988643
No 188
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-19 Score=127.03 Aligned_cols=87 Identities=25% Similarity=0.373 Sum_probs=80.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEE--------EEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCce
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS--------VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRIT 78 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~ 78 (227)
+..+.++|||+|||..+++++|+++|++| .|.. +.|+.++.+++++|||||+|.+.++|.+||+ +++ ..
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~ 81 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG-KE 81 (116)
Confidence 45678999999999999999999999999 9988 8999998899999999999999999999999 999 99
Q ss_pred eCCeEeEEEecCCCCCCC
Q psy1680 79 VDGLQVRLDIADGKRNDN 96 (227)
Q Consensus 79 ~~g~~l~v~~~~~~~~~~ 96 (227)
+.|+.|.|.++.++....
T Consensus 82 ~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADFN 99 (116)
Confidence 999999999998876543
No 189
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=7.2e-18 Score=124.66 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-C--eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-K--LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~--i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..++|||+|||+++|+++|+++|++| . |..|.|+.|+.+++++|||||+|.+.++|.+||+ +++ ..|+|+.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng-~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG-KVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT-CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCeEeEEE
Confidence 45899999999999999999999999 3 8999999999999999999999999999999999 899 99999999999
Q ss_pred ecCCC
Q psy1680 88 IADGK 92 (227)
Q Consensus 88 ~~~~~ 92 (227)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98754
No 190
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=6.4e-18 Score=120.59 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=68.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 20 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 20 VEGWILFVTGVHEEA--TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp SSSEEEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 456799999997655 7999999999999999999999999999999999999999999999999999999985
No 191
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=115.36 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=64.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEE-EEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~-v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||+.+ ++++|+++|+.||.|.. |+|+++ .+|+++|||||+|.+.++|.+||+. ++..|+||
T Consensus 13 ~~~~~l~V~nLp~~~--te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGC--SKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp SCCCEEEEESCCTTC--CHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 356789999997655 89999999999999987 889999 7899999999999999999999998 99999986
No 192
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=6.5e-18 Score=117.09 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=67.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|.+|.|++++ ++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 27 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGV--SDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CCSEEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 467899999997655 789999999999999999999998 899999999999999999999999999999885
No 193
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=114.15 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|.|++++. .++|||||+|.+.++|.+|++.|||..|+||
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 13 STPKRLHVSNIPFRF--RDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCCEEEEESCCTTC--CHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467899999997655 7999999999999999999999864 3899999999999999999999999999885
No 194
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.9e-18 Score=118.12 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceE--------EEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLV--------SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~--------~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
.+..+|||+|||..+ ++++|+++|+.||.|. .|+|++++.++.++|||||+|.+.++|.+|++.|||..|
T Consensus 13 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSV--TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCEEEEECCCTTC--CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEcCCCCCC--CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 467899999997655 7899999999999999 699999999999999999999999999999999999999
Q ss_pred cCC
Q psy1680 225 DGL 227 (227)
Q Consensus 225 ~gr 227 (227)
+||
T Consensus 91 ~g~ 93 (113)
T 2cpe_A 91 QGS 93 (113)
T ss_dssp TTE
T ss_pred CCC
Confidence 885
No 195
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=114.90 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=63.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 20 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDI--RTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CCSSEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 467899999997655 89999999999999999999665 56899999999999999999999999999885
No 196
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=118.90 Aligned_cols=68 Identities=21% Similarity=0.120 Sum_probs=62.7
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+|||+|||+.+ ++++|+++|+.| .|.+|+|++|+. |+++|||||+|.+.++|.+|| .+|+..|+||
T Consensus 16 ~~~v~V~nLp~~~--te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr 83 (109)
T 2dnn_A 16 DLYVSVHGMPFSA--MENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR 83 (109)
T ss_dssp HHEEEEECCCSSC--CHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTE
T ss_pred CCEEEEeCCCCCC--CHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 4689999997655 899999999999 899999999976 999999999999999999999 7999999986
No 197
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=115.72 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=75.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
....+.++|||+|||.++++++|+++|++| .|..+.|+.++ +.++|||||+|.+.++|++|++ +++ ..++|+.|.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHG-TVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTT-CEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCC-CEECCEEEE
Confidence 345677999999999999999999999999 99999999885 3489999999999999999999 999 999999999
Q ss_pred EEecCCC
Q psy1680 86 LDIADGK 92 (227)
Q Consensus 86 v~~~~~~ 92 (227)
|.++.++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999865
No 198
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=5.8e-18 Score=113.34 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=65.7
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++|||+|||... ++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|.+|+ .|||..|+||
T Consensus 6 ~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 6 ARSIYVGNVDYGA--TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp HTEEEEESCCTTC--CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 4689999997665 79999999999999999999999999999999999999999999999 9999999885
No 199
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.7e-18 Score=125.27 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=74.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
.....++|||+|||+++|+++|+++|++|.+..|.|++++. ++++|||||+|.+.++|++||++++ ..|+++.|+|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g-~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDR-ANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCS-CSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCC-CEECCEEEEEEE
Confidence 45667899999999999999999999999445999999976 9999999999999999999999999 999999999999
Q ss_pred cCCCCC
Q psy1680 89 ADGKRN 94 (227)
Q Consensus 89 ~~~~~~ 94 (227)
+.++..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 887654
No 200
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=114.58 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=64.5
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|.+|.|++++. .++|||||+|.+.++|.+|++.|+|..|+||
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDV--TEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCCEEEEESCCTTC--CHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEeCCCccC--CHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 567899999997655 7999999999999999999999864 3689999999999999999999999999885
No 201
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=5.7e-18 Score=116.00 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=63.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecC-CCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDK-ETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~-~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||... ++++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+ .|||..|+||
T Consensus 17 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 17 SPPYTAFLGNLPYDV--TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---CEEEESCCSSCC--SSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 456899999997665 7899999999999 9999999998 68999999999999999999999 9999999986
No 202
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=113.56 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=63.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||+. +..|+||
T Consensus 13 ~~~~~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~ 83 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKT--TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGR 83 (103)
T ss_dssp CCCCCEEEESCCSSC--CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTE
T ss_pred CCCCEEEEEcCCCcC--CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCe
Confidence 467899999997655 7999999999999999999999999999999999999999999999994 5666664
No 203
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=116.27 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=65.7
Q ss_pred CCCCcceeccCCCCCCCChhhHH---hhhccccceEEEEEeecCCCC---cccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHG---LMVTEVTTLVSVRLVKDKETD---RFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~---~~f~~~g~i~~v~i~~d~~t~---~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.+.++|||+|||+.+ ++++|+ ++|++||.|..|.|++++.++ .++|||||+|.+.++|.+|++.|||..|+|
T Consensus 13 ~~~~~l~V~nLp~~~--~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRL--ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTT--CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cCCCEEEEECCCCCC--CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 457899999997665 789999 999999999999999998755 456999999999999999999999999998
Q ss_pred C
Q psy1680 227 L 227 (227)
Q Consensus 227 r 227 (227)
|
T Consensus 91 r 91 (111)
T 2cpi_A 91 R 91 (111)
T ss_dssp E
T ss_pred E
Confidence 6
No 204
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=113.21 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=73.6
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
......+.++|||+|||..+++++|+++|++| .|..+ ..++.++|||||+|.+.++|.+|+. +++ ..++|+.
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~ 82 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG-AEIDGRS 82 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTE-EEETTEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeE
Confidence 33455678999999999999999999999999 77665 3568899999999999999999999 999 9999999
Q ss_pred eEEEecCCCCC
Q psy1680 84 VRLDIADGKRN 94 (227)
Q Consensus 84 l~v~~~~~~~~ 94 (227)
|.|.++.++..
T Consensus 83 l~v~~a~~~~~ 93 (96)
T 1fjc_A 83 VSLYYTGEKGG 93 (96)
T ss_dssp EEEEECSSSCC
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 205
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=4.7e-18 Score=119.97 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=65.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccc---eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTT---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~---i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||+.+ ++++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||+ +||..|+||
T Consensus 15 ~~~~~l~V~nLp~~~--te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 15 GEGYVVKLRGLPWSC--SIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp CCCCEEEEESCCTTC--CHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 356789999997655 89999999999998 89999999987 9999999999999999999999 999999986
No 206
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=3.8e-18 Score=123.09 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccc---eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTT---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~---i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||+.+ |+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|.+||+ +||..|+||
T Consensus 42 ~~~~~lfVgnLp~~~--te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSC--SVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CTTCEEEEESCCTTC--CHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 356789999997655 89999999999998 89999999988 9999999999999999999999 999999987
No 207
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=120.26 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=64.8
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||+.+ ++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||+ |||..|+||
T Consensus 24 ~~~~l~V~nLp~~~--te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 24 AGFCVYLKGLPFEA--ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCEEEEECCCTTC--CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 45789999997655 799999999999999987777777889999999999999999999999 999999986
No 208
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.5e-17 Score=111.97 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=65.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 6 ~~~~~l~V~nlp~~~--t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 6 SGACQIFVRNLPFDF--TWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SSCCEEEECSCCTTC--CHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 457899999997655 78999999999999999999984 689999999999999999999999999999986
No 209
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-18 Score=111.27 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=64.3
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+|||+|||... ++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|++.++ ..|+||
T Consensus 1 ~~l~v~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~ 69 (77)
T 1uaw_A 1 CKMFIGGLSWQT--TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK 69 (77)
T ss_dssp CCEEEESCCSSC--CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE
Confidence 379999997665 789999999999999999999999999999999999999999999999999 888886
No 210
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=6.8e-18 Score=117.45 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=64.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.++ ..|+||
T Consensus 23 ~~~~~lfV~nLp~~~--te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~ 94 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQT--TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK 94 (109)
T ss_dssp ---CCEEEESCCTTC--CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCE
Confidence 467899999997655 899999999999999999999999999999999999999999999999875 888875
No 211
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=109.15 Aligned_cols=78 Identities=18% Similarity=0.410 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||.++++++|+++|++| .|..+.++ ++||||+|.+.++|++|++ +++ ..++|+.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 74 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHH-YKLHGVNINV 74 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTT-CBCSSCBCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcC-CccCCcEEEE
Confidence 45678999999999999999999999999 99999997 5799999999999999998 999 9999999999
Q ss_pred EecCCCCCC
Q psy1680 87 DIADGKRND 95 (227)
Q Consensus 87 ~~~~~~~~~ 95 (227)
.++.++...
T Consensus 75 ~~a~~~~~~ 83 (90)
T 2dnq_A 75 EASKNKSKA 83 (90)
T ss_dssp ECSSCCCCC
T ss_pred EECCCCCCC
Confidence 999877654
No 212
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.2e-18 Score=115.37 Aligned_cols=67 Identities=7% Similarity=-0.049 Sum_probs=60.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC--CccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG--RITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~--g~~i~gr 227 (227)
++..+|||+|||+.+ ++++|+++|++||.|++|+|+++ +|||||+|++.++|.+|++.|+ +..|+||
T Consensus 14 ~~~~~LfV~nLp~~v--te~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr 82 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDV--TEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 82 (105)
T ss_dssp CCCCEEEECSCCTTS--CHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 567899999997665 89999999999999999999986 6999999999999999999886 4788875
No 213
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=1.9e-18 Score=116.01 Aligned_cols=79 Identities=30% Similarity=0.505 Sum_probs=72.0
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~~ 91 (227)
++|||+|||.++++++|+++|++| .|..+.+++++.+++++|||||+|.+.+ |.+|+. +++ ..++|+.|.|.++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g-~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN-TDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS-SCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC-CEECCeEEEEEEcCC
Confidence 589999999999999999999999 9999999999999999999999999999 999999 999 999999999999987
Q ss_pred CCC
Q psy1680 92 KRN 94 (227)
Q Consensus 92 ~~~ 94 (227)
+..
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 214
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-18 Score=118.35 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=66.1
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|+ .|||..|+|+
T Consensus 24 ~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAARI--RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV 94 (114)
T ss_dssp HHTEEEEESCCTTC--CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence 34789999997655 79999999999999999999999999999999999999999999999 9999999885
No 215
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-18 Score=118.70 Aligned_cols=87 Identities=22% Similarity=0.335 Sum_probs=73.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.+..+.++|||+|||..+|+++|+++|++| .|..+.+..+..+++++|||||+|.+.++|.+||+ +++ ..|.|+.|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~ 98 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG-YKLYGKILV 98 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT-CBCSSCBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEE
Confidence 345677999999999999999999999999 88433222222368889999999999999999999 999 999999999
Q ss_pred EEecCCCCCC
Q psy1680 86 LDIADGKRND 95 (227)
Q Consensus 86 v~~~~~~~~~ 95 (227)
|.++.++...
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999877653
No 216
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=114.66 Aligned_cols=70 Identities=17% Similarity=0.051 Sum_probs=61.0
Q ss_pred CCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcc--ccCC
Q psy1680 150 SRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT--VDGL 227 (227)
Q Consensus 150 ~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~--i~gr 227 (227)
...+|+++|||+|||+.. ++++|+++|++||.|++|+++++ ||||||+|++.++|.+|++.|+|.. |+||
T Consensus 16 ~~~~ps~~l~V~NLp~~~--te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGV--VEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp -CCCCCSEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccCCCCcEEEEeCCCCCC--CHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 344688999999997665 79999999999999999999864 6999999999999999999998875 6675
No 217
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=111.36 Aligned_cols=82 Identities=27% Similarity=0.362 Sum_probs=74.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
+....+.++|||+|||..+++++|+++|++| .|..+.++++ +|||||+|.+.++|.+|++ +++ ..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g-~~~~g~~l 81 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDN-MPLRGKQL 81 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTT-CCBTTBCC
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCC-CEeCCceE
Confidence 3445677999999999999999999999999 9999999854 7899999999999999998 999 99999999
Q ss_pred EEEecCCCCCC
Q psy1680 85 RLDIADGKRND 95 (227)
Q Consensus 85 ~v~~~~~~~~~ 95 (227)
.|.++.++...
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpj_A 82 RVRFACHSASL 92 (99)
T ss_dssp EEEESSCCSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876643
No 218
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-18 Score=119.04 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=65.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccce-EEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTL-VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i-~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||+.+ ++++|+++|+.||.| ..|+|++|+ +|+++|||||+|.+.++|.+||+. ||..|+||
T Consensus 13 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr 84 (114)
T 2cpy_A 13 SAKVCAHITNIPFSI--TKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGR 84 (114)
T ss_dssp SCCCEEEEESCCTTS--CHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE
T ss_pred CCccEEEEeCcCCcC--CHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCe
Confidence 456789999997655 899999999999999 899999998 899999999999999999999998 99999886
No 219
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=108.04 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-h-CCCceeCC
Q psy1680 5 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K-DGRITVDG 81 (227)
Q Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~-~~~~~~~g 81 (227)
..+....+.++|||+|||..+++++|+++|++| .|..+.++++ +|||||+|.+.++|.+|++ + ++ ..++|
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~-~~~~g 76 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNK-LIVNG 76 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTT-CEETT
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCC-eeECC
Confidence 345566788999999999999999999999999 9999999864 7899999999999999999 8 99 99999
Q ss_pred eEeEEEecC
Q psy1680 82 LQVRLDIAD 90 (227)
Q Consensus 82 ~~l~v~~~~ 90 (227)
++|.|.+++
T Consensus 77 ~~l~v~~ak 85 (85)
T 2ytc_A 77 RRLNVKWGR 85 (85)
T ss_dssp EECCEEECC
T ss_pred CEEEEEecC
Confidence 999999874
No 220
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.7e-17 Score=113.23 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=65.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|+|++++ ++.++|||||+|.+.++|.+|++.|||..|+|
T Consensus 23 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 23 QDPTNLYISNLPLSM--DEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCTTEEEEESCCTTC--CHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 456789999997655 799999999999999999999998 89999999999999999999999999999965
No 221
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=2.6e-18 Score=111.36 Aligned_cols=74 Identities=23% Similarity=0.480 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
+|||+|||.++++++|+++|++| .|..+.++.++.+++++|||||+|.+.++|.+|+++++ ..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY-HNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS-CCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEC
Confidence 58999999999999999999999 99999999999999999999999999999999999888 9999999999875
No 222
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=6.3e-18 Score=117.25 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=78.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-C---eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-K---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 82 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~---i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~ 82 (227)
..+....++|||+|||+++|+++|+++|+.| . |..|.|+.++. ++++|||||+|.+.++|.+||.+++ ..++|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~-~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHR-MYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTT-CCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCc-ceeCCe
Confidence 3456778999999999999999999999998 6 89999999987 9999999999999999999999999 999999
Q ss_pred EeEEEecCCCC
Q psy1680 83 QVRLDIADGKR 93 (227)
Q Consensus 83 ~l~v~~~~~~~ 93 (227)
.|.|.++.++.
T Consensus 83 ~i~V~~a~~~~ 93 (107)
T 2lmi_A 83 YVEVYEINNED 93 (107)
T ss_dssp CCCCEECCHHH
T ss_pred EEEEEECCHHH
Confidence 99999987643
No 223
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=3.8e-18 Score=114.51 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=64.9
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++|||+|||... ++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.+ |.+|++.|||..|+||
T Consensus 2 ~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~ 70 (90)
T 2ki2_A 2 RNIYVGNLVYSA--TSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR 70 (90)
T ss_dssp EEEEEEEECTTS--SHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS
T ss_pred cEEEECCCCCCC--CHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe
Confidence 379999997655 79999999999999999999999999999999999999999 9999999999999986
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=1.7e-18 Score=147.95 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=67.5
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+..+|||+|||+.+ ++++|..+|+.||.|+.|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+
T Consensus 101 ~~~~lfV~nL~~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 101 AFKTLFVARVNYDT--TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 56789999997655 7899999999999999999999999999999999999999999999999999999885
No 225
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=8.2e-17 Score=114.51 Aligned_cols=72 Identities=21% Similarity=0.157 Sum_probs=67.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++.+|||+|||... ++++|+++|+.||.|.+|.|++++ +|.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 33 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGV--SDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp SSCEEEEEESCCSSC--CHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 456799999997655 799999999999999999999998 899999999999999999999999999999986
No 226
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=114.11 Aligned_cols=67 Identities=9% Similarity=-0.043 Sum_probs=59.2
Q ss_pred CCCCcceeccCCC-CCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc--cccCC
Q psy1680 153 GEGPGGFRNNNGP-NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI--TVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~-~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~--~i~gr 227 (227)
.++.+|||+|||+ .+ ++++|+++|++||.|.+|.|+++ +|||||+|++.++|.+|++.||+. .|+||
T Consensus 13 ~p~~~l~V~nLp~~~~--te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKN--LRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCEEEEESCCCSSS--HHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCEEEEeCCCCCcC--CHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 4678999999976 55 89999999999999999999876 489999999999999999998864 47775
No 227
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=114.51 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hC--CCceeCCeE
Q psy1680 9 PTEPPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD--GRITVDGLQ 83 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~--~~~~~~g~~ 83 (227)
...++++|||+|||++ +++++|+++|++| .|..|.|++. +|||||+|.+.++|..|++ ++ + ..|.|++
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~-~~l~Gr~ 93 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKA-LWFQGRC 93 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSC-CCSSSSC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCC-ceECCEE
Confidence 3567899999999998 9999999999999 9999999743 7899999999999999998 75 4 5699999
Q ss_pred eEEEecCCCCCC
Q psy1680 84 VRLDIADGKRND 95 (227)
Q Consensus 84 l~v~~~~~~~~~ 95 (227)
|.|.++..++..
T Consensus 94 l~V~~a~~~~~~ 105 (112)
T 1x4f_A 94 VKVDLSEKYKKL 105 (112)
T ss_dssp CEEEEECSCSSS
T ss_pred EEEEECcccccc
Confidence 999999876653
No 228
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=9.8e-17 Score=137.01 Aligned_cols=84 Identities=21% Similarity=0.422 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..+.++|||+|||+.+|+++|+++|++| .|..|.|+.++.++.++|||||+|.+.++|.+||. ||+ ..|.|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng-~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG-KKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 3456899999999999999999999999 99999999999999999999999999999999998 999 99999999999
Q ss_pred ecCCCCC
Q psy1680 88 IADGKRN 94 (227)
Q Consensus 88 ~~~~~~~ 94 (227)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987654
No 229
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=110.00 Aligned_cols=79 Identities=19% Similarity=0.379 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC--CeEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD--GLQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~--g~~l 84 (227)
...+.++|||+|||.++++++|+++|++| .|..+.++.+ +|||||+|.+.++|++|++ +|+ ..+. |+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g-~~~~~~g~~l 85 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRG-FPLGGPDRRL 85 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTT-CBCSSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCC-CEeCCCCcEE
Confidence 45667999999999999999999999999 9999999754 7899999999999999999 999 9999 9999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (97)
T 1why_A 86 RVDFAKSGPS 95 (97)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 230
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=2.1e-17 Score=122.28 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=68.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.|||..|+|+
T Consensus 37 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYT--TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TTCCEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 356899999997655 7999999999999999999999999999999999999999999999999999999875
No 231
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=111.56 Aligned_cols=68 Identities=7% Similarity=-0.037 Sum_probs=59.8
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc--CCccccCC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD--GRITVDGL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l--~g~~i~gr 227 (227)
.+++.+|||+|||..+ ++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.| ++..|+||
T Consensus 12 ~~p~~~l~V~nLp~~~--te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEV--TETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp SSCCSEEEEESCCTTC--CHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 3577899999997655 89999999999999999999876 799999999999999999976 46778775
No 232
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=107.25 Aligned_cols=79 Identities=16% Similarity=0.321 Sum_probs=72.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
....+.++|||+|||..+++++|+++|++| .|..+.++ ++||||+|.+.++|.+|++ +++ ..+.|+.|.
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 75 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDN-TEFQGKRMH 75 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTT-EEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCC-CeeCCcEEE
Confidence 345678999999999999999999999999 99999997 3499999999999999998 999 999999999
Q ss_pred EEecCCCCCC
Q psy1680 86 LDIADGKRND 95 (227)
Q Consensus 86 v~~~~~~~~~ 95 (227)
|.++.++...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999877653
No 233
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=108.96 Aligned_cols=75 Identities=23% Similarity=0.420 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
++|||+|||.++++++|+++|++| .|..+.++.++.+++++|||||+|.+.++|.+|++..+ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999 99999999999999999999999999999999999555 8999999999886
No 234
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4e-17 Score=107.30 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
..+..|||+||++.+|+++|+++|.+| +|..+.++. ++|||||+|.+.++|.+|++ ||+ ..+.|++|+|..
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~-~~l~gr~I~V~~ 77 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNN-CVLANTTIFAES 77 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT-EEETTEEEEEEC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC-CEECCcEEEEEE
Confidence 357889999999999999999999999 999999975 48999999999999999999 999 999999999999
Q ss_pred cC
Q psy1680 89 AD 90 (227)
Q Consensus 89 ~~ 90 (227)
+.
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 235
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=3.3e-17 Score=113.00 Aligned_cols=75 Identities=11% Similarity=-0.047 Sum_probs=65.8
Q ss_pred CCCCcceeccCCCC---CCCChhhHHhhhccccceEEEEEeecCCC-CcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPN---RSNSMNDHGLMVTEVTTLVSVRLVKDKET-DRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~---~~~~~~~l~~~f~~~g~i~~v~i~~d~~t-~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++++|+|.||..+ .++++++|+++|++||.|.+|.|++++.+ +.++|+|||+|.+.++|.+|++.|||+.++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46789999999632 23478999999999999999999999765 68999999999999999999999999999997
No 236
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=5.5e-18 Score=109.79 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=63.1
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+|||+|||... ++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|++. ++..|+||
T Consensus 1 ~l~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDT--PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS 68 (75)
T ss_dssp CEEESCCCSSC--CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB
T ss_pred CEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 58999997655 7999999999999999999999999999999999999999999999996 78888885
No 237
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=116.50 Aligned_cols=82 Identities=15% Similarity=0.294 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----hcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVE----RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 82 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~ 82 (227)
+..+.++|||+|||+.+++++|+ ++|++| .|..|.+.+ +++++|||||+|.+.++|..|+. +|| ..|.|+
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng-~~l~gr 100 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQG-YPFQGN 100 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTT-CCCTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCC-CEeCCC
Confidence 35667999999999999999876 699999 999988853 57889999999999999999998 999 999999
Q ss_pred EeEEEecCCCCC
Q psy1680 83 QVRLDIADGKRN 94 (227)
Q Consensus 83 ~l~v~~~~~~~~ 94 (227)
+|.|.++..+..
T Consensus 101 ~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 PLVITFSETPQS 112 (127)
T ss_dssp CCEEEECCCCCH
T ss_pred EEEEEEccCcch
Confidence 999999987654
No 238
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=112.10 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=63.3
Q ss_pred CCCcceeccCCCCCCCChhhHH----hhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHG----LMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~----~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||... ++++|+ ++|++||.|.+|+|++|+.+ +|||||+|.+.++|.+|++.|||..|+||
T Consensus 8 ~~~~l~V~nL~~~~--~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 8 NGADVQVSNIDYRL--SRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp SCEEEEEESCCTTS--CHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCC--CHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45689999997655 789999 99999999999999999875 89999999999999999999999999986
No 239
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-17 Score=112.56 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred CCCCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc--cccCC
Q psy1680 150 SRGGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI--TVDGL 227 (227)
Q Consensus 150 ~~~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~--~i~gr 227 (227)
...+++.+|||+|||..+ ++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++. .|+||
T Consensus 10 ~~~~p~~~l~V~nLp~~~--te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESV--VEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCCCCCSEEEEESCCSSC--CHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CcCCCCCEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 334678899999997655 79999999999999999999875 699999999999999999988654 47775
No 240
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.5e-16 Score=118.06 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=78.9
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 6 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
......+.++|||+|||..+++++|+++|++| .|..+.++.++.++.++|||||+|.+.++|.+|+. +++ ..++|++
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~ 158 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG-QDLNGRP 158 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT-CEETTEE
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CccCCcE
Confidence 34456678999999999999999999999999 99999999999999999999999999999999999 999 9999999
Q ss_pred eEEEecC
Q psy1680 84 VRLDIAD 90 (227)
Q Consensus 84 l~v~~~~ 90 (227)
|.|.+++
T Consensus 159 i~v~~a~ 165 (166)
T 3md3_A 159 LRINWAA 165 (166)
T ss_dssp CEEEESC
T ss_pred EEEEecC
Confidence 9999986
No 241
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.2e-17 Score=114.73 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~ 87 (227)
.....++|||+|||.++++++|+++|++| .|..+.|+.++ +++++|||||+|.+.++|++||. ++ ..++|+.|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~-~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQ-INFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CC-CEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CC-CeECCEEEEEE
Confidence 44567999999999999999999999999 99999999998 89999999999999999999999 98 99999999999
Q ss_pred ecCCCCC
Q psy1680 88 IADGKRN 94 (227)
Q Consensus 88 ~~~~~~~ 94 (227)
++.++..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9886654
No 242
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=2.4e-17 Score=128.10 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=67.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.|..+|||+|||+.+ ++++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|.+|++.+++..+.||
T Consensus 13 ~p~~tlfVgnLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 13 YPMASLYVGDLHPDV--TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp --CCEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 356789999997655 8999999999999999999999999999999999999999999999999999998875
No 243
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=110.21 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=64.5
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||... ++++|+++|+.| .|..|+|+++ .+|+++|||||+|.+.++|.+|++ |||..|+||
T Consensus 8 ~~~~~l~v~nLp~~~--t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNV--TEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCCEEEEECCCSSC--CHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CCccEEEEECCCCCC--CHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 356789999997655 799999999999 8999999999 789999999999999999999999 999999986
No 244
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=110.21 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
..+..++|||+|||..+++++|+++|++| .|. +.++.+ +++|||||+|.+.++|.+|++ +|+ ..++|+.|.|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V 88 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQG-LRLGTDTLRV 88 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTT-CCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCC-CEECCcEEEE
Confidence 45667999999999999999999999999 886 666654 568999999999999999998 999 9999999999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.++.+++.
T Consensus 89 ~~a~~~~~ 96 (97)
T 2e5j_A 89 ALARQQRD 96 (97)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99987653
No 245
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=116.67 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-Ce----EEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KL----VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 84 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i----~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l 84 (227)
....++|||+|||+++|+++|+++|++| .| ..|.|+.+ .+++++|||||+|.+.++|++||+.++ ..|+++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~-~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHK-DLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTT-EESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCC-CeeCCeEE
Confidence 4567999999999999999999999999 75 68999998 479999999999999999999999999 99999999
Q ss_pred EEEecCCC
Q psy1680 85 RLDIADGK 92 (227)
Q Consensus 85 ~v~~~~~~ 92 (227)
.|..+.++
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988654
No 246
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=107.04 Aligned_cols=77 Identities=17% Similarity=0.456 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||..+|+++|+++|++| .|..+.++ ++||||+|.+.++|.+||+ +++ ..++|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNG-KEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTT-CEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEE
Confidence 45678999999999999999999999999 99999997 3499999999999999999 999 9999999999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.++.++..
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 247
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=3.6e-17 Score=111.25 Aligned_cols=83 Identities=19% Similarity=0.388 Sum_probs=73.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----hcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVE----RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
.+..++++|||+|||.++++++|+ ++|++| .|..+.+++ ++.++|||||+|.+.++|.+|++ +++ ..++|
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g 78 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG-FPFYD 78 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT-CEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC-CEECC
Confidence 345778999999999999999999 999999 999998874 47788999999999999999999 999 99999
Q ss_pred eEeEEEecCCCCC
Q psy1680 82 LQVRLDIADGKRN 94 (227)
Q Consensus 82 ~~l~v~~~~~~~~ 94 (227)
+.|.|.++.++..
T Consensus 79 ~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 KPMRIQYAKTDSD 91 (97)
T ss_dssp EECEEEECSSCCT
T ss_pred cEEEEEEccCCCc
Confidence 9999999987653
No 248
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=114.52 Aligned_cols=71 Identities=10% Similarity=0.067 Sum_probs=65.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccc---eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTT---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~---i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||+.+ ++++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|.+||+ ++|..|+||
T Consensus 9 ~~~~~l~V~nLp~~~--te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSC--TMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp SSCCEEEEECCCSSC--CSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCccEEEEeCCCCCC--CHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 356789999997655 78999999999998 89999999988 9999999999999999999999 999999986
No 249
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=1.2e-16 Score=110.99 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|||.++++++|+++|++| .|..+.++ +|||||+|.+.++|.+|++ +++ ..++|+.|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V 97 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHG-KSFANQPLEV 97 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTT-CEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCC-CEECCeEEEE
Confidence 45677999999999999999999999999 99999987 6899999999999999999 999 9999999999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.++.++..
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99987654
No 250
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=114.64 Aligned_cols=68 Identities=9% Similarity=-0.016 Sum_probs=60.4
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCC--ccccCC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR--ITVDGL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g--~~i~gr 227 (227)
.+++.+|||+|||+.+ ++++|+++|++||.|++|+|+++ +|||||+|++.++|.+|++.+++ ..|+||
T Consensus 28 ~~ps~~LfVgNLp~~v--te~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDV--TEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp SSCCSEEEEESCCTTC--CHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 3577899999997665 89999999999999999999886 69999999999999999998874 578775
No 251
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-17 Score=114.16 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=66.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccc-eEEEEEe-ecCCCCcccceEEEEEcCHHHHHHHHHHcC--CccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTT-LVSVRLV-KDKETDRFKGFCYVEFVDVENLRQALLKDG--RITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~-i~~v~i~-~d~~t~~~~g~afV~F~~~~~a~~Al~~l~--g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|+.||. |.+|.|+ +++.++.++|||||+|.+.++|.+|++.|+ +..|+||
T Consensus 6 ~~~~~l~V~nLp~~~--t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~ 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMK--KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 82 (109)
T ss_dssp CCSEEEEEECCCTTS--CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred cCCCEEEEeCCCCcC--CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence 456789999997655 79999999999998 9999998 898899999999999999999999999996 5889885
No 252
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=108.64 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=65.7
Q ss_pred CceEEEcCCCCCC------CHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe-E
Q psy1680 13 PYTAFVGNLPNGI------TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL-Q 83 (227)
Q Consensus 13 ~~~l~V~nLp~~~------t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~-~ 83 (227)
+++|||+|||..+ ++++|+++|++| .|..+.|+ +.+++++|||||+|.+.++|.+|++ +|| ..++|+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG-YKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSS-CCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcC-cccCCcee
Confidence 4789999999999 779999999999 99999987 4678999999999999999999999 999 999999 8
Q ss_pred eEE
Q psy1680 84 VRL 86 (227)
Q Consensus 84 l~v 86 (227)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 876
No 253
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=110.54 Aligned_cols=78 Identities=21% Similarity=0.460 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
....++|||+|||..+++++|+++|++| .|..|.|+.+ +|||||+|.+.++|.+||. +++ ..|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG-TTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCC-CEECCcEEEEE
Confidence 4567899999999999999999999999 9999999876 7899999999999999998 999 99999999999
Q ss_pred ecCCCCC
Q psy1680 88 IADGKRN 94 (227)
Q Consensus 88 ~~~~~~~ 94 (227)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987654
No 254
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=108.01 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=61.3
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc--CC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD--GL 227 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~--gr 227 (227)
.++..+|||+|||... ++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|||..|+ |+
T Consensus 14 ~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 14 ANPTTRLWVGGLGPNT--SLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCSCEEEECCCSSC--CHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 3567899999997665 79999999999999999999765 689999999999999999999999998 65
No 255
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=8.2e-17 Score=112.97 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
+..++++|||+|||..+++++|+++|++| .|..+.|+.+ +.++|||||+|.+.++|.+|+. +|+ ..++|+.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 79 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSG-FNVSNRYLVV 79 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTT-CBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEEE
Confidence 45678999999999999999999999999 9999999876 4458999999999999999999 999 9999999999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.++.++..
T Consensus 80 ~~a~~~~~ 87 (115)
T 3lqv_A 80 LYYNANRA 87 (115)
T ss_dssp EECCHHHH
T ss_pred EEecCChh
Confidence 99976543
No 256
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=5.4e-17 Score=113.98 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=65.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE---
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ--- 83 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~--- 83 (227)
+....++|||+|||+++++++|+++|++| .|..|.|+.+ |||||+|.+.++|++||+ ||+ ..|+|+.
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g-~~~~gr~~~~ 83 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN-TKFRSHEGET 83 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTT-CBCCCTTSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCC-CEECCcEeee
Confidence 34667999999999999999999999999 9999999865 899999999999999999 999 9999998
Q ss_pred --eEEEecCCCCC
Q psy1680 84 --VRLDIADGKRN 94 (227)
Q Consensus 84 --l~v~~~~~~~~ 94 (227)
|+|..+.++..
T Consensus 84 ~~i~v~~~~~~~~ 96 (115)
T 3beg_B 84 AYIRVKVDGPRSP 96 (115)
T ss_dssp CBCEEEECC----
T ss_pred EEEEeccCCCCCC
Confidence 77777766544
No 257
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=4.7e-16 Score=117.30 Aligned_cols=72 Identities=21% Similarity=0.157 Sum_probs=67.1
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.++.+|||+|||..+ ++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 86 ~~~~~l~V~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr 157 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGV--SDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 157 (177)
T ss_dssp TTCEEEEEECCCSCC--CHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 457899999997655 799999999999999999999998 899999999999999999999999999999986
No 258
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.4e-17 Score=120.51 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=63.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||+.+ ++++|+++|++|| |.+|+|++|++ ++++|||||+|.+.++|++|| .+|+..|+||
T Consensus 44 ~~~~~lfV~nLp~~~--te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKA--TENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp -CCCCEECCSCCTTC--CHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 356789999997655 8999999999999 77999999987 999999999999999999999 8899999987
No 259
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=3.2e-17 Score=116.59 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=65.6
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+|||+|||..+ ++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|.+|+ .|||..|+|+
T Consensus 36 ~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 105 (124)
T 2jwn_A 36 KRSVYVGNVDYGS--TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR 105 (124)
T ss_dssp HTEEEEEEECTTC--CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 5789999997655 79999999999999999999999999999999999999999999999 8999999885
No 260
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=2.5e-17 Score=129.28 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhcccc--ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVT--TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g--~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||..+ ++++|+++|+.|| .|++|+|++|+.|++++|||||+|.+.++|.+||+.|||..|+||
T Consensus 67 ~~~~lfVgnL~~~~--te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWT--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTC--CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCC--CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 45689999996655 8999999999999 999999999999999999999999999999999999999999986
No 261
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=113.61 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=64.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 27 ~~~~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 27 SQPKRLHVSNIPFRF--RDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp TCCCEEEEESCCTTC--CHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEECCCCcC--CHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 467899999997655 799999999999999999999985 45899999999999999999999999999985
No 262
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1.9e-16 Score=120.93 Aligned_cols=87 Identities=18% Similarity=0.376 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
..+.++|||+|||.++|+++|+++|++| .|..+.|+.++.++.++|||||+|.+.++|.+||..++ ..|+|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~-~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSC-CEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCC-cEECCEEEEEEe
Confidence 3456899999999999999999999999 99999999999899999999999999999999999788 999999999999
Q ss_pred cCCCCCCCC
Q psy1680 89 ADGKRNDNK 97 (227)
Q Consensus 89 ~~~~~~~~~ 97 (227)
+.++.....
T Consensus 180 a~~k~~~~~ 188 (196)
T 1l3k_A 180 ALSKQEMAS 188 (196)
T ss_dssp CC-------
T ss_pred cCChhHhcc
Confidence 998876543
No 263
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=105.73 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 88 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~ 88 (227)
....++|||+|||.++++++|+++|++| .|..| +.++.+++ ||||+|.+.++|.+||++++ ..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g-~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQ-HSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSC-CEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCC-eEECCEEEEEEE
Confidence 3456899999999999999999999999 99987 56666555 99999999999999999999 999999999998
Q ss_pred cCCCCC
Q psy1680 89 ADGKRN 94 (227)
Q Consensus 89 ~~~~~~ 94 (227)
+.++..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 876554
No 264
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=5.6e-17 Score=106.60 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=59.1
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.-|||+||++.. ++++|+++|.+||.|.++++.. ++|||||+|.+.++|.+|++.|||..++||
T Consensus 7 ~~wL~VgNL~~~~--te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 7 SSWLLLKNLTAQI--DGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCEEEEECCCTTC--CCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cceEEEeCCCccC--CHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 5579999996555 7899999999999999999865 589999999999999999999999999986
No 265
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=109.77 Aligned_cols=70 Identities=23% Similarity=0.243 Sum_probs=63.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.| ..|.+++++.++.++|||||+|.+.++|.+||+.|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDT--TEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CCCSSEEEECCCTTC--CHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCcc--CHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 567899999997655 799999999977 3688889988999999999999999999999999999999885
No 266
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=8e-17 Score=114.80 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCCCcceeccCCCCCCCChhhHH----hhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHG----LMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~----~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||+.+ ++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..|.||
T Consensus 27 ~p~~~LfV~nL~~~~--~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 27 EPSQVVLITNINPEV--PKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp SCCSEEEEESCCTTS--CHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 467899999997655 667654 7999999999998854 478999999999999999999999999999986
No 267
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-17 Score=115.60 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=65.9
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+..+|||+|||..+ ++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||+. +|..|+||
T Consensus 26 ~~~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFET--TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTTCC--CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 35789999997655 7999999999999999999999999999999999999999999999999 99999885
No 268
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.3e-17 Score=110.31 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
....++|||+|||.++++++|+++|++| .|..+.+++ ++|||||+|.+.++|.+|+. +++ ..++|+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALAN-FPFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTT-CEETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEE
Confidence 3456899999999999999999999999 999999973 37999999999999999998 999 99999999999
Q ss_pred ecCCC
Q psy1680 88 IADGK 92 (227)
Q Consensus 88 ~~~~~ 92 (227)
++.++
T Consensus 97 ~a~~~ 101 (101)
T 2la4_A 97 WGKER 101 (101)
T ss_dssp BCCCC
T ss_pred eccCC
Confidence 98764
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=110.06 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=61.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.| +++++ .++.++|||||+|.+.++|.+|++.|||..|+||
T Consensus 13 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 13 GESKTLVLSNLSYSA--TEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCCSEEEEESCCTTC--CHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 467899999997665 899999999999977 66777 6799999999999999999999999999999885
No 270
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=2.5e-16 Score=109.64 Aligned_cols=77 Identities=23% Similarity=0.551 Sum_probs=70.0
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
+....++|||+|||+. +++++|+++|++| .|..|.| ++|||||+|.+.++|++||+ +++ ..|+|+.|.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~ 93 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENG-RVLAGQTLD 93 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTT-CEETTEECC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCC-CEECCeEEE
Confidence 3445589999999999 9999999999999 9999988 37899999999999999998 999 999999999
Q ss_pred EEecCCCCC
Q psy1680 86 LDIADGKRN 94 (227)
Q Consensus 86 v~~~~~~~~ 94 (227)
|.++.+++.
T Consensus 94 V~~a~~~~~ 102 (110)
T 1wf1_A 94 INMAGEPKP 102 (110)
T ss_dssp EEESCCCCS
T ss_pred EEECCCCCC
Confidence 999986554
No 271
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.7e-16 Score=107.01 Aligned_cols=77 Identities=18% Similarity=0.395 Sum_probs=69.9
Q ss_pred CCCCCCceEEEcCCCC-CCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 8 LPTEPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
.+..+.++|||+|||. ++++++|+++|++| .|..+.|. +|||||+|.+.++|.+|+. +++ ..++|+.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQ-EMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTT-SEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC-CEECCEEE
Confidence 3467789999999998 99999999999999 99999983 7899999999999999999 999 99999999
Q ss_pred EEEecCCCC
Q psy1680 85 RLDIADGKR 93 (227)
Q Consensus 85 ~v~~~~~~~ 93 (227)
.|.++.++.
T Consensus 88 ~V~~a~~~~ 96 (97)
T 2xnq_A 88 ILEVSSSNA 96 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCC
Confidence 999987643
No 272
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=5.4e-17 Score=115.30 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=62.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceE--EEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLV--SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~--~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||+.+ ++++|+++|++| .|. +|+|++|+. |+++|||||+|.+.++|.+||+. ++..|+||
T Consensus 40 ~~~~~lfVgnLp~~~--te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGC--TKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHR 111 (126)
T ss_dssp SSCCEEEEECCCTTC--CHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCE
Confidence 346789999997665 899999999999 576 999999987 99999999999999999999996 66899886
No 273
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.7e-16 Score=104.80 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=69.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC---CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 82 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~---~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~ 82 (227)
+....+.++|||+|||+.+++++|+++|++| .|..+.++ +|||||+|.+.++|.+||. +++ ..|.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g-~~~~g~ 79 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNG-KVLDGS 79 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSS-EEETTE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCC-CEeCCc
Confidence 3445678999999999999999999999999 36666664 6799999999999999999 999 999999
Q ss_pred EeEEEecCCCCC
Q psy1680 83 QVRLDIADGKRN 94 (227)
Q Consensus 83 ~l~v~~~~~~~~ 94 (227)
.|.|.++.++..
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 274
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.1e-16 Score=112.20 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=63.5
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++++|||+|||..+ ++++|+++|++||.|.+|.|+++ +.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 6 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 6 EVNRILYIRNLPYKI--TAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp TCCSEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 457899999997655 79999999999999999999987 45699999999999999999999999999986
No 275
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=9.4e-17 Score=126.01 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=73.7
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCCC---eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQK---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~~---i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..++|||+|||+++|+++|+++|++|. |..|.|++++.+++++|||||+|.+.++|.+||+ ||+ ..|.|+.|.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng-~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK-RELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT-SCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CeECCEEeEEE
Confidence 567899999999999999999999993 8999999999999999999999999999999999 999 99999999999
Q ss_pred ecCC
Q psy1680 88 IADG 91 (227)
Q Consensus 88 ~~~~ 91 (227)
++.+
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 276
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-17 Score=113.50 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=62.6
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|..|.+..+..++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 23 ~~~~~l~V~nLp~~~--t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRV--TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTC--CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 467899999997655 8999999999999995544443434789999999999999999999999999999886
No 277
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.2e-16 Score=108.51 Aligned_cols=77 Identities=19% Similarity=0.439 Sum_probs=69.6
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
...+.++|||+|||+ .+++++|+++|++| .|..+.|. +|||||+|.+.++|.+|++ +++ ..+.|+.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~ 76 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQ-EMNFGKKLI 76 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTC-SSCBTTTBC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC-CeeCCcEEE
Confidence 456789999999998 99999999999999 99999984 6899999999999999999 999 999999999
Q ss_pred EEecCCCCC
Q psy1680 86 LDIADGKRN 94 (227)
Q Consensus 86 v~~~~~~~~ 94 (227)
|.++.++..
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999987654
No 278
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=120.05 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..+.++|||+|||+.+++++|+++|++| .|..|.|+.++ ++.++|||||+|.+.++|.+||+ +++ ..|+|+.|.|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng-~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG-VPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTT-CBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 4567899999999999999999999999 99999999998 89999999999999999999999 999 99999999999
Q ss_pred ecCCCC
Q psy1680 88 IADGKR 93 (227)
Q Consensus 88 ~~~~~~ 93 (227)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987654
No 279
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=109.49 Aligned_cols=64 Identities=20% Similarity=0.165 Sum_probs=59.5
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
...+|||+|||..+ ++++|+++|++||.|..|.|+++ |||||+|.+.++|++||+.|||..|+|
T Consensus 14 ~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 14 SENRVVVSGLPPSG--SWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCCEEEEESCCSSC--CHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 46789999997655 79999999999999999999887 899999999999999999999999988
No 280
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=2e-17 Score=113.43 Aligned_cols=71 Identities=27% Similarity=0.285 Sum_probs=64.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.||.|.. .++++..++.++|||||+|.+.++|.+|++ |||..|+||
T Consensus 15 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNK--SVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp SCSEEEEEECCCTTS--CHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence 356789999997655 79999999999999988 778888889999999999999999999999 999999886
No 281
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-17 Score=115.86 Aligned_cols=71 Identities=13% Similarity=-0.017 Sum_probs=63.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccce----EEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTL----VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i----~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
....+|||+|||+.+ ++++|+++|++||.| ..|+|++| .+|+++|||||+|.+.++|.+||+. ++..|+||
T Consensus 21 ~~~~~v~V~nLp~~~--te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTA--TAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTC--CHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 345789999997655 899999999999875 69999999 4799999999999999999999997 88999886
No 282
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=104.33 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc-CCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD-GRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l-~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.| +|..|+|+
T Consensus 10 ~~~~~l~V~~l~~~~--t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 10 KTITTLYVGGLGDTI--TETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp SSCCCEEEECCTTTS--CHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCccEEEEcCCCCCC--CHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 466899999997655 79999999999999999999874 699999999999999999998 99999885
No 283
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=107.47 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEE-EEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v-~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.....++|||+|||+.+++++|+++|++| .|..+ .|+.++.++. |||+|.+.++|.+|+. +++ ..++|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~ 85 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNG-FQLENFTLK 85 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTT-CBCSSCBCE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCC-CEECCcEEE
Confidence 34567999999999999999999999999 99999 5888766443 9999999999999999 999 999999999
Q ss_pred EEecCCCC
Q psy1680 86 LDIADGKR 93 (227)
Q Consensus 86 v~~~~~~~ 93 (227)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (96)
T 2e44_A 86 VAYIPDEM 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEcCccc
Confidence 99998874
No 284
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=107.98 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||..+ ++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDI--TEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CCTTEEEEESCCTTC--CHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 567899999997655 79999999999999999999865 69999999999999999999999999885
No 285
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.9e-16 Score=116.33 Aligned_cols=80 Identities=31% Similarity=0.480 Sum_probs=73.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
....+.++|||+|||+.+|+++|+++|++| .|..|.|+++ ++|||||+|.+.++|.+||. +++ ..++|++|.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 141 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDG-RTLCGCRVR 141 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSS-SCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEE
Confidence 345677999999999999999999999999 9999999876 48999999999999999999 999 999999999
Q ss_pred EEecCCCC
Q psy1680 86 LDIADGKR 93 (227)
Q Consensus 86 v~~~~~~~ 93 (227)
|.++.+++
T Consensus 142 v~~a~~~~ 149 (150)
T 2i2y_A 142 VELSNGEK 149 (150)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998764
No 286
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.7e-16 Score=110.36 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
.....++|||+|||+++++++|+++|++| .|..+.|+.+ +++|||||+|.+.++|++||+ +|+ ..|+|+.|.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng-~~l~Gr~i~ 98 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNN-IEFRGSVIT 98 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTT-EEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCC-CEECCeEEE
Confidence 44567899999999999999999999999 4888887532 468999999999999999998 999 999999999
Q ss_pred EEecCCC
Q psy1680 86 LDIADGK 92 (227)
Q Consensus 86 v~~~~~~ 92 (227)
|.++..+
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998754
No 287
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=6.7e-18 Score=118.80 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=67.6
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEE--------EEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVS--------VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~--------v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
.+..+|||+|||..+ ++++|+++|++||.|.. |.|++++.++.++|||||+|.+.++|.+|++.|||..|
T Consensus 5 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENV--TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 456789999997655 78999999999999999 99999999999999999999999999999999999999
Q ss_pred cCC
Q psy1680 225 DGL 227 (227)
Q Consensus 225 ~gr 227 (227)
+||
T Consensus 83 ~g~ 85 (116)
T 2lcw_A 83 SGN 85 (116)
Confidence 886
No 288
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=108.97 Aligned_cols=67 Identities=12% Similarity=-0.031 Sum_probs=58.7
Q ss_pred CCCCcceeccCCCC-CCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC--CccccCC
Q psy1680 153 GEGPGGFRNNNGPN-RSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG--RITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~-~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~--g~~i~gr 227 (227)
.++.+|||+|||+. + ++++|+++|++||.|.+|.|++. +|||||+|++.++|.+|++.|+ +..|+||
T Consensus 23 ~p~~~l~V~NLp~~~~--te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGY--SDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp CCCCEEEEESCCCSSC--CSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCEEEEeCCCCccC--CHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 56789999999765 5 78999999999999999999754 7999999999999999999885 4568876
No 289
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=4.9e-16 Score=103.75 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEec
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 89 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~ 89 (227)
...++|||+|||+.+++++|+++|++|.|..+.|. +++|||||+|.+.++|.+|++ +++ ..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQ-YSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTT-EEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCC-CeECCcEEEEEEc
Confidence 35789999999999999999999999977777774 568999999999999999999 999 9999999999998
Q ss_pred CCCC
Q psy1680 90 DGKR 93 (227)
Q Consensus 90 ~~~~ 93 (227)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 290
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=106.45 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=59.9
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+...+|||+|||..+ ++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..|+||
T Consensus 17 ~~~~~l~V~nL~~~~--t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 17 PLAADVYVGNLPRDA--RVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCCEEEEECCCTTC--CHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCEEEEeCCCCcC--cHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 456799999997655 7999999999999997 666654 6789999999999999999999999999986
No 291
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=1e-15 Score=118.66 Aligned_cols=83 Identities=18% Similarity=0.337 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
...++|||+|||.++++++|+++|++| .|..+.|++++.+++++|||||+|.+.++|.+|++ +++ ..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL-FDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CBCSSSBCEEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC-CEeCCcEEEEEE
Confidence 456899999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCCCCC
Q psy1680 89 ADGKRN 94 (227)
Q Consensus 89 ~~~~~~ 94 (227)
+.++..
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 987654
No 292
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=8.3e-16 Score=114.95 Aligned_cols=80 Identities=26% Similarity=0.450 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
....++|||+|||..+++++|+++|++| .|..+.++.++.++.++|||||+|.+.++|.+|++ +++ ..++|+.|.|.
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 169 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG-MQLGDKKLLVQ 169 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC-CEECCeEEEEE
Confidence 4557999999999999999999999999 99999999998899999999999999999999999 999 99999999999
Q ss_pred ecC
Q psy1680 88 IAD 90 (227)
Q Consensus 88 ~~~ 90 (227)
++.
T Consensus 170 ~As 172 (172)
T 2g4b_A 170 RAS 172 (172)
T ss_dssp ECC
T ss_pred eCC
Confidence 873
No 293
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=2.5e-16 Score=116.99 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=66.6
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++|||+|||+.. ++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 2 ~~~l~v~nlp~~~--~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNM--TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CSEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cceEEEcCCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 5689999997665 7999999999999999999999998999999999999999999999999999999875
No 294
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3e-16 Score=110.01 Aligned_cols=76 Identities=9% Similarity=0.188 Sum_probs=68.7
Q ss_pred ceEEEcCC----CCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCC----HHH----HHHHHH---hCCCc
Q psy1680 14 YTAFVGNL----PNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD----VEN----LRQALL---KDGRI 77 (227)
Q Consensus 14 ~~l~V~nL----p~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~----~~~----a~~al~---~~~~~ 77 (227)
.+|||+|| |+.+++.+|+++|++| +|.++.++.|+.||+++|||||+|.+ .++ |.+|+. +++ .
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng-~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG-C 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC-E
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC-C
Confidence 78999999 9999999999999999 99999999999999999999999996 323 788876 699 9
Q ss_pred eeCCeEeEEEecC
Q psy1680 78 TVDGLQVRLDIAD 90 (227)
Q Consensus 78 ~~~g~~l~v~~~~ 90 (227)
.|+|++|+|.+-.
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999864
No 295
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=4.5e-16 Score=104.20 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=62.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCC-ceeCCeEe
Q psy1680 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR-ITVDGLQV 84 (227)
Q Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~-~~~~g~~l 84 (227)
..+..+.++|||+|||+++|+++|+++|++| .|.++.|+++ ++|||||+|.+.++|.+ +++. ..+.|+.|
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v 76 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS---LCGEDLIIKGISV 76 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH---HTTCEEEETTEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH---HcCCCcccCCEEE
Confidence 3466788999999999999999999999999 9999999874 68999999999999884 3440 45679999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|.++.++..
T Consensus 77 ~v~~a~~k~~ 86 (89)
T 3d2w_A 77 HISNAEPKHN 86 (89)
T ss_dssp EEEECC----
T ss_pred EEEEcCCCCc
Confidence 9999987654
No 296
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=2.8e-16 Score=110.28 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=58.7
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||..+ ++++|+++|++||.|..|.|+++ |||||+|.+.++|.+||+.|||.+|+|+
T Consensus 15 ~~~~l~V~nLp~~~--t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSG--SWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSC--CTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35789999997655 78999999999999999999876 8999999999999999999999999985
No 297
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=4.7e-17 Score=111.76 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=61.1
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++.+|||+|||... ++++|+++|+.||.|.+|+|++++ +|.++|||||+|.+.++|.+|++ +|..|+|
T Consensus 8 ~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g 75 (102)
T 2xs2_A 8 MPNTVFVGGIDVRM--DETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHG 75 (102)
T ss_dssp EEEEEEEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETT
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECC
Confidence 46789999997655 799999999999999999999998 89999999999999999999999 5555555
No 298
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.7e-17 Score=112.98 Aligned_cols=70 Identities=6% Similarity=-0.028 Sum_probs=62.1
Q ss_pred CcceeccC----CCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcC----HHH----HHHHHH--HcCC
Q psy1680 156 PGGFRNNN----GPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVD----VEN----LRQALL--KDGR 221 (227)
Q Consensus 156 ~~l~v~nl----~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~----~~~----a~~Al~--~l~g 221 (227)
..|||+|| |+.. ++++|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|++ .++|
T Consensus 3 ~kI~VgnL~~~~~~~t--te~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNI--QDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCC--CHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 57999999 7655 789999999999999999999999999999999999996 433 888988 8899
Q ss_pred ccccCC
Q psy1680 222 ITVDGL 227 (227)
Q Consensus 222 ~~i~gr 227 (227)
..|+||
T Consensus 81 ~~I~Gr 86 (136)
T 2j8a_A 81 CFIMGF 86 (136)
T ss_dssp EEETTE
T ss_pred CeecCc
Confidence 999986
No 299
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=1.2e-16 Score=111.17 Aligned_cols=68 Identities=21% Similarity=0.085 Sum_probs=60.8
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||+.+ ++++|+++|++|| .|..+.|..+ .++|||||+|.+.++|++|++.|||..|+||
T Consensus 27 ~~~~l~VgnLp~~~--te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 27 KRYRITMKNLPEGC--SWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CCEEEEEECSSCCC--CHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEECCCCCC--CHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45689999997655 7899999999999 8999988643 4789999999999999999999999999986
No 300
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=104.37 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=59.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..|+|+
T Consensus 6 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 70 (90)
T 2dnq_A 6 SGMVKLFIGNLPREA--TEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV 70 (90)
T ss_dssp SCCEEEEEESCCSSC--CHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCeEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 467899999997655 799999999999999999987 58999999999999999999999999886
No 301
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=7.3e-17 Score=117.62 Aligned_cols=85 Identities=21% Similarity=0.378 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEE--E---eecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVR--L---VKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~--i---~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
+..++++|||+|||+.+|+++|+++|++| .|..+. + ++...+++++|||||+|.+.++|.+||. +|+ ..|.|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng-~~~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG-YVLFG 119 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT-BEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC-CEeCC
Confidence 45678999999999999999999999999 876531 1 1112468889999999999999999999 999 99999
Q ss_pred eEeEEEecCCCCC
Q psy1680 82 LQVRLDIADGKRN 94 (227)
Q Consensus 82 ~~l~v~~~~~~~~ 94 (227)
+.|.|.++.+...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999976543
No 302
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=1.6e-16 Score=108.03 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=63.2
Q ss_pred CCCCcceeccCCCCCCCChhhHH----hhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHG----LMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~----~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++.+|||+|||... ++++|+ ++|++||.|..|.+++ ++.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 6 ~~~~~l~V~nLp~~~--~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 6 RPNHTIYINNLNEKI--KKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp CCCSEEEEESCCTTS--CHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 567899999997655 789999 9999999999999874 478899999999999999999999999999885
No 303
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=1.3e-15 Score=116.51 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
.+.++|||+|||..+++++|+++|++| .|..+.+++++.++.++|||||+|.+.++|.+|++ +++ ..++|+.|.|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG-MQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEE
Confidence 567999999999999999999999999 99999999998899999999999999999999999 999 999999999999
Q ss_pred cCCCCC
Q psy1680 89 ADGKRN 94 (227)
Q Consensus 89 ~~~~~~ 94 (227)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 304
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.3e-16 Score=117.48 Aligned_cols=80 Identities=19% Similarity=0.403 Sum_probs=76.6
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~ 90 (227)
+.++|||+|||..+++++|+++|++| .|..+.++.++.++.++|||||+|.+.++|.+|+++++ ..++|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~-~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKF-IDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSE-ECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCC-EEeCCeEEEEeecC
Confidence 46799999999999999999999999 99999999998899999999999999999999999999 99999999999998
Q ss_pred CC
Q psy1680 91 GK 92 (227)
Q Consensus 91 ~~ 92 (227)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 305
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.9e-16 Score=108.83 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 88 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~ 88 (227)
...++|||+|||+.+++++|+++|++| .|..|.|+. +++||||+|.+.++|.+||. ||+ ..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 80 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAY-SKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTT-CBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCC-CEECCeEEEEEE
Confidence 346899999999999999999999999 999998874 37899999999999999999 999 999999999999
Q ss_pred cCCC
Q psy1680 89 ADGK 92 (227)
Q Consensus 89 ~~~~ 92 (227)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8754
No 306
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=110.46 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=60.7
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCC---CcccceEEEEEcCHHHHHHHHHHc---CCccc
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKET---DRFKGFCYVEFVDVENLRQALLKD---GRITV 224 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t---~~~~g~afV~F~~~~~a~~Al~~l---~g~~i 224 (227)
...+|||+|||..+ ++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.| +|..|
T Consensus 7 ~~~~lfVgnLp~~~--te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDI--DEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTC--CHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCC--CHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 46789999997655 8999999999999999 999998888 799999999999999999999998 66533
No 307
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-15 Score=100.72 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=69.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 86 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v 86 (227)
...+.++|||+|| ++++++|+++|++| .|..|.|. +++|||||+|.+.++|.+||. +++ ..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~v 81 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNG-TQVESVQLKV 81 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTT-EEETTEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEE
Confidence 4457799999996 89999999999999 99999985 447899999999999999998 999 9999999999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.++.++..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99987654
No 308
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.6e-16 Score=103.57 Aligned_cols=80 Identities=20% Similarity=0.398 Sum_probs=69.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-C-eEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-K-LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~-i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
...+.++|||+|||.++|+++|+++|++| . |..+.+. ++|||||+|.+.++|.+|++ +|+...++|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 44667999999999999999999999999 8 5555552 37899999999999999999 8874589999999
Q ss_pred EEecCCCCCC
Q psy1680 86 LDIADGKRND 95 (227)
Q Consensus 86 v~~~~~~~~~ 95 (227)
|.++.++...
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 309
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=106.19 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCC---CCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKET---DRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~---~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
....++|||+|||+++++++|+++|++| .|. +.++.++.+ |+++|||||+|.+.++|++||+ ++ .++|+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~---~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL---EEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE---EETTEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh---hcCCcEE
Confidence 4567999999999999999999999999 998 888888777 7999999999999999999998 62 2445555
Q ss_pred EEEe
Q psy1680 85 RLDI 88 (227)
Q Consensus 85 ~v~~ 88 (227)
.+..
T Consensus 81 ~~~~ 84 (114)
T 2dnl_A 81 LCVS 84 (114)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 5443
No 310
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=103.50 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=60.9
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEE-EEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v-~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||... ++++|+++|++||.|.+| .|++++.++. |||+|.+.++|.+|++.|||..|+||
T Consensus 14 ~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 14 RIRKLQIRNIPPHL--QWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp SCCCEEEEEECSSS--CHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEEcCCCCC--CHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46789999997655 799999999999999999 5888876544 99999999999999999999999986
No 311
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.7e-16 Score=107.63 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=61.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+...+|||+|||..+ ++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 23 ~~~~~l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 23 PKNCTVYCGGIASGL--TDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp SSCCEEEEECCSSCC--CHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 456799999997655 79999999999999999999887 69999999999999999999999999885
No 312
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=8.9e-16 Score=105.52 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=58.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+.++|||+|||..+ ++++|+++|++||.|..|.|++ |||||+|.+.++|.+|++.|||..|+|+
T Consensus 9 ~~~~~l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 9 AKVKVLFVRNLANTV--TEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCCEEEECCCTTC--CHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 456899999997655 7999999999999999999873 5999999999999999999999999885
No 313
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.8e-16 Score=108.39 Aligned_cols=66 Identities=14% Similarity=-0.012 Sum_probs=59.9
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..++|||+|||..+ ++++|+++|++||.|..|.|++ ++|||||+|.+.++|.+|++.|||..|+||
T Consensus 9 ~~~~l~V~nLp~~~--te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 9 SKTVILAKNLPAGT--LAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 45789999997655 8999999999999999999875 468999999999999999999999999986
No 314
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.4e-16 Score=104.58 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=58.8
Q ss_pred CCCCcceeccCCC-CCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGP-NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~-~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||. .+ ++++|+++|++||.|.+|.|. +|||||+|.+.++|.+|++.|||..|+|+
T Consensus 8 ~~~~~l~V~nlp~~~~--t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNV--SKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp -CCEEEEEESSTTSCC--CHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCCCEEEEeCCCcccC--CHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 5678999999975 55 799999999999999999983 68999999999999999999999999886
No 315
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=8.6e-16 Score=104.48 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=59.1
Q ss_pred CCCCcceeccCCC-CCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGP-NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~-~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++..+|||+|||. .. ++++|+++|+.||.|.+|+|. +|||||+|.+.++|.+|++.|||..|+|+
T Consensus 20 ~~~~~l~V~nLp~~~~--t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNV--SKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp CTTCEEEEESCCSSCC--CHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CCCCEEEEeCCCcccC--CHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 5678999999975 55 799999999999999999983 68999999999999999999999999885
No 316
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=107.95 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=59.9
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+|||+|||... ++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 1 ~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 65 (101)
T 2hvz_A 1 MKVYVGNLGTGA--GKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGS 65 (101)
T ss_dssp CEEEEECCCSSC--SHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCc
Confidence 369999997655 89999999999999999999988 689999999999999999999999999886
No 317
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.5e-16 Score=105.79 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=59.8
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||... ++++|+++|+.||.|.+|+|++ ++|||||+|.+.++|.+|++.|||..|+||
T Consensus 26 ~~~~l~V~nlp~~~--~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 26 RVTTAYIGNIPHFA--TEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp SCCEEEEESCCTTC--CHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCccc--CHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 45789999997655 7999999999999999999973 479999999999999999999999999985
No 318
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.8e-16 Score=102.23 Aligned_cols=78 Identities=23% Similarity=0.459 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEec
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 89 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~ 89 (227)
.++++|||+|||.++++++|+++|++| .|..+.|+.+ ++|||||+|.+.++|++++.. . ..+.++.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~-~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-D-LIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-E-EEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-C-ceeCCEEEEEEec
Confidence 467999999999999999999999999 9999999864 589999999999999765333 3 5679999999999
Q ss_pred CCCCCC
Q psy1680 90 DGKRND 95 (227)
Q Consensus 90 ~~~~~~ 95 (227)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877653
No 319
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=106.31 Aligned_cols=79 Identities=14% Similarity=0.285 Sum_probs=70.1
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCcee-----
Q psy1680 9 PTEPPYTAFV--GNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV----- 79 (227)
Q Consensus 9 ~~~~~~~l~V--~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~----- 79 (227)
...++++||| +||++++++++|+++|++| .|..|.|+.+ +|||||+|.+.++|++|++ ||| ..+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG-~~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNG-KEVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTT-CEEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCC-CEEccccC
Confidence 4567899999 7799999999999999999 9999988643 7899999999999999999 999 988
Q ss_pred CCeEeEEEecCCCCC
Q psy1680 80 DGLQVRLDIADGKRN 94 (227)
Q Consensus 80 ~g~~l~v~~~~~~~~ 94 (227)
.+++|.|.++.....
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 688999999876544
No 320
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=6.8e-16 Score=107.07 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=59.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..|+|+
T Consensus 29 ~~~~~l~V~nLp~~~--t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDV--QESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp CSCSEEEECSSCTTC--CHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEECCCCCC--CHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 567899999997655 799999999999999999987 68999999999999999999999999885
No 321
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=3.2e-15 Score=106.21 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecE-EEEEeCCHHHHHHHHH-hCCCceeCC--eEeEE
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGF-CYVEFVDVENLRQALL-KDGRITVDG--LQVRL 86 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~-afv~f~~~~~a~~al~-~~~~~~~~g--~~l~v 86 (227)
+--.|||+||++.+|+++|+++|++| .|.+|.|+.+. +|+ |||+|.+.++|..|++ ||| ..|.| +.|+|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG-~~i~g~~~~LrI 100 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDG-QNIYNACCTLRI 100 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTT-CEEETTEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCC-CeecCCCcEEEE
Confidence 33677899999999999999999999 99999887642 577 9999999999999999 999 99988 89999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.+++++.-
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99987654
No 322
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=5.2e-16 Score=109.05 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=65.8
Q ss_pred CCCCcceeccCCCC---CCCChhhHHhhhccccceEEEEEeecCC----CCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 153 GEGPGGFRNNNGPN---RSNSMNDHGLMVTEVTTLVSVRLVKDKE----TDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 153 ~~~~~l~v~nl~~~---~~~~~~~l~~~f~~~g~i~~v~i~~d~~----t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
+++++|++.|+-.+ .++.++||+++|++||.|.+|.|++++. ++.++|++||+|.+.++|.+|++.|||+.++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 46889999999432 2346799999999999999999999875 4578899999999999999999999999999
Q ss_pred CC
Q psy1680 226 GL 227 (227)
Q Consensus 226 gr 227 (227)
||
T Consensus 98 GR 99 (118)
T 3ue2_A 98 GR 99 (118)
T ss_dssp TE
T ss_pred Cc
Confidence 97
No 323
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=102.04 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|++.|||..|+|+
T Consensus 7 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 7 GNTWKIFVGNVSAAC--TSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CCSCCEEEESCCTTC--CHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 467899999997655 89999999999999999999743 999999999999999999999999885
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.1e-16 Score=116.61 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=62.1
Q ss_pred CCCCCcceeccCCCCCCCChhhHHhhhccccceEEEE--E---eecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 152 GGEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVR--L---VKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~--i---~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
..++.+|||+|||+.+ ++++|+.+|+.||.|..|. + ++...++.++|||||+|.+.++|.+|++.|||..|+|
T Consensus 42 ~~~~~~l~V~nLp~~~--te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHV--QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CSCCSEEEEEEECTTC--CHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3567899999997655 8999999999999887641 1 1123468999999999999999999999999999998
Q ss_pred C
Q psy1680 227 L 227 (227)
Q Consensus 227 r 227 (227)
|
T Consensus 120 ~ 120 (143)
T 3egn_A 120 K 120 (143)
T ss_dssp E
T ss_pred c
Confidence 5
No 325
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.5e-16 Score=107.77 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=56.6
Q ss_pred CCCCccee--ccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 153 GEGPGGFR--NNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 153 ~~~~~l~v--~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
.+..+||| +||+... ++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|++.|||.+|
T Consensus 23 ~pt~~L~V~Ng~L~~~~--te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGV--SRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTC--CHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCC--CHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46778999 6696544 89999999999999999988653 69999999999999999999999987
No 326
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=4.5e-15 Score=110.41 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=75.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC--eEe
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQV 84 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g--~~l 84 (227)
...+.++|||+|||..+++++|+++|++| .|..+.+++++.++.++|||||+|.+.++|.+|++ +++ ..+.| ++|
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~~~l 163 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN-VIPEGGSQPL 163 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CCCTTCSSCC
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC-CEecCCCeEE
Confidence 34567999999999999999999999999 99999999998899999999999999999999999 999 99988 999
Q ss_pred EEEec
Q psy1680 85 RLDIA 89 (227)
Q Consensus 85 ~v~~~ 89 (227)
+|.+|
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 327
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-16 Score=105.97 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=60.5
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..|+||
T Consensus 14 ~~~~~l~V~nL~~~~--t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 14 RAARTLLAKNLSFNI--TEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp TGGGEEEEESCCSSC--CHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 457899999997655 799999999999988766 35689999999999999999999999999999885
No 328
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=3.3e-15 Score=112.08 Aligned_cols=80 Identities=25% Similarity=0.395 Sum_probs=72.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeE
Q psy1680 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 85 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~ 85 (227)
....+.++|||+|||..+++++|+++|++| .|..+ ..++.++|||||+|.+.++|.+|+. +++ ..++|+.|.
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~ 167 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG-AEIDGRSVS 167 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE-EEETTEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC-CEECCeEEE
Confidence 344567999999999999999999999999 87765 4678899999999999999999999 999 999999999
Q ss_pred EEecCCCC
Q psy1680 86 LDIADGKR 93 (227)
Q Consensus 86 v~~~~~~~ 93 (227)
|.++.++.
T Consensus 168 v~~a~~k~ 175 (175)
T 1fje_B 168 LYYTGEKG 175 (175)
T ss_dssp EEECSSCC
T ss_pred EEecCCCC
Confidence 99998763
No 329
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=3.2e-15 Score=103.94 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=58.5
Q ss_pred CCCcceeccCCCC-CCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPN-RSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~-~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+..+|||+|||+. . ++++|+++|++||.|..|.| ++|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 26 ~~~~l~V~nl~~~~~--t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 26 INSRVFIGNLNTALV--KKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp CSSEEEECSCCCSSC--CHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCcccC--CHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4579999999765 4 79999999999999999998 479999999999999999999999999885
No 330
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=1.1e-15 Score=105.30 Aligned_cols=75 Identities=12% Similarity=-0.064 Sum_probs=64.4
Q ss_pred CCCCcceeccCCCC--CC------CChhhHHhhhccccceEEEEEeecCCC--CcccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 153 GEGPGGFRNNNGPN--RS------NSMNDHGLMVTEVTTLVSVRLVKDKET--DRFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 153 ~~~~~l~v~nl~~~--~~------~~~~~l~~~f~~~g~i~~v~i~~d~~t--~~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
.|+++|.+.|+=.+ .. ++++||+++|++||.|.+|.|++++.+ +.++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57889999999322 21 134789999999999999999999865 368999999999999999999999999
Q ss_pred cccCC
Q psy1680 223 TVDGL 227 (227)
Q Consensus 223 ~i~gr 227 (227)
.++||
T Consensus 83 ~f~GR 87 (105)
T 3v4m_A 83 KFANR 87 (105)
T ss_dssp EETTE
T ss_pred EeCCC
Confidence 99997
No 331
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=2.3e-15 Score=110.96 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC--eEeEE
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVRL 86 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g--~~l~v 86 (227)
....+|||+||++.+|+++|+++|++| .|..|.|+.+ .++|||||+|.+.++|+.|++ |+| ..|.| +.|+|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG-~~i~g~g~~L~V 118 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDG-QNIYNACCTLRI 118 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTT-BCSSSSCSCEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCC-CEecCCCcEEEE
Confidence 344778999999999999999999999 9999998654 247899999999999999999 999 99965 99999
Q ss_pred EecCCCCC
Q psy1680 87 DIADGKRN 94 (227)
Q Consensus 87 ~~~~~~~~ 94 (227)
.+++++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99987653
No 332
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=7.5e-15 Score=103.81 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=65.9
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecE-EEEEeCCHHHHHHHHH-hCCCceeCC--eEeEEEe
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGF-CYVEFVDVENLRQALL-KDGRITVDG--LQVRLDI 88 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~-afv~f~~~~~a~~al~-~~~~~~~~g--~~l~v~~ 88 (227)
..|||+||++.+|+++|+++|++| .|..|.|+.. .|| |||+|.+.++|..|++ ||| ..|.| +.|+|.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG-~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNG-ADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTT-CCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCC-CEecCCCeEEEEEE
Confidence 346799999999999999999999 9999998652 275 9999999999999999 999 99987 6999999
Q ss_pred cCCCCC
Q psy1680 89 ADGKRN 94 (227)
Q Consensus 89 ~~~~~~ 94 (227)
++++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 987654
No 333
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=101.81 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||..+ ++++|+++|+.||.|.+| +.++.++. ||||+|.+.++|.+|++ |||..|+||
T Consensus 7 ~~~~l~V~nl~~~~--t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~ 72 (94)
T 2e5g_A 7 GLRSVFVSGFPRGV--DSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGH 72 (94)
T ss_dssp TCCEEEEECCCTTC--CHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred CCCEEEEECCCCCC--CHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence 45689999997655 899999999999999987 66666666 99999999999999999 999999985
No 334
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=101.97 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=59.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|++.|||..|+|+
T Consensus 8 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 8 KASTKLHVGNISPTC--TNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp CSSEEEEEESCCSSC--CHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 467899999997655 79999999999999999999743 999999999999999999999999885
No 335
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.8e-15 Score=101.57 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=58.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccc--cceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEV--TTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~--g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|||..+ ++++|+++|+.| |.|..|.+. +|||||+|.+.++|.+|++.|||..|+||
T Consensus 13 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 13 SSVKILYVRNLMLST--SEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp SCCCEEEEESCCTTC--CHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred CCcCEEEEeCCCCCC--CHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 467899999997665 799999999999 899999764 57999999999999999999999999885
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=2.1e-15 Score=100.29 Aligned_cols=73 Identities=33% Similarity=0.618 Sum_probs=65.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcccCC------------CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCC
Q psy1680 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ------------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 76 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~------------~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~ 76 (227)
+..+.++|||+|||+++++++|+++|++| .|..+.+.++ +|||||+|.+.++|.+|+.+++
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g- 74 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDG- 74 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCC-
Confidence 34567999999999999999999999987 5788888654 7999999999999999999999
Q ss_pred ceeCCeEeEEEe
Q psy1680 77 ITVDGLQVRLDI 88 (227)
Q Consensus 77 ~~~~g~~l~v~~ 88 (227)
..++|+.|+|..
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999974
No 337
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=2.5e-15 Score=112.44 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=64.1
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCC--cccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETD--RFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~--~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
.+.+|||+|||+.+ ++++|+++|++||.|.+|+|++++.++ .++|||||+|.+.++|.+|++.|+|..+.
T Consensus 2 ~~~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTW--SEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 35689999997665 899999999999999999999999887 89999999999999999999999998764
No 338
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=1.9e-15 Score=116.61 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=61.7
Q ss_pred CCCCcceeccCC-CCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNG-PNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~-~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++.+|||+||| ..+ ++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|++.|||..|.||
T Consensus 2 ~~~~~l~V~nL~~~~~--~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKM--NCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCCSEEEEECCCTTTC--CHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCcccC--CHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 467899999997 444 789999999999999999998863 79999999999999999999999999885
No 339
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.9e-15 Score=98.29 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCCCce-EEEcCCCCCCCHHH----HHhcccCC--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 10 TEPPYT-AFVGNLPNGITQGD----VERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 10 ~~~~~~-l~V~nLp~~~t~~~----l~~~f~~~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
.+++.+ |||+|||+.+++++ |+++|++| +|.+| ++ |+|||.|.+.++|.+|++ |+| ..+.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G-~~l~g 73 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMEN-EDVFG 73 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTT-CCSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcC-CccCC
Confidence 345666 99999999999987 55899999 68887 23 999999999999999999 999 99999
Q ss_pred eEeEEEecCCCCC
Q psy1680 82 LQVRLDIADGKRN 94 (227)
Q Consensus 82 ~~l~v~~~~~~~~ 94 (227)
++|+|.++..++.
T Consensus 74 r~i~v~~A~~~sd 86 (96)
T 2diu_A 74 NRIIVSFTPKNRE 86 (96)
T ss_dssp SCCEEESSCCSCC
T ss_pred ceEEEEecCCCcc
Confidence 9999999987765
No 340
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=1.9e-15 Score=100.91 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=58.8
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
...+|||+|||+.. ++++|+++|++| .|.+|+|. +++|||||+|.+.++|.+|++.|||..|+||
T Consensus 4 ~~~~l~V~nLp~~~--t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 68 (88)
T 1wg1_A 4 GSSGILVKNLPQDS--NCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK 68 (88)
T ss_dssp CCCCEEEESCCSSC--CHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 45789999997655 799999999999 99999884 5789999999999999999999999999985
No 341
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.2e-15 Score=99.54 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=58.3
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|| +.++++|+++|++||.|.+|.|. .++|||||+|.+.++|.+|++.|||..|+||
T Consensus 13 ~~~~~l~V~n~----~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 13 RKGNTLYVYGE----DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCCSEEEEECS----SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCEEEEcCC----CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 45679999996 44899999999999999999984 4579999999999999999999999999885
No 342
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=1.2e-14 Score=111.01 Aligned_cols=78 Identities=14% Similarity=0.354 Sum_probs=72.1
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEeEEEecCC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 91 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l~v~~~~~ 91 (227)
.++|||+|||+++|+++|+++|++| .|..|.|+++. +++++|||||+|.+.++|.+||...+ ..++|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4899999999999999999999999 99999999985 48999999999999999999999667 799999999998765
Q ss_pred C
Q psy1680 92 K 92 (227)
Q Consensus 92 ~ 92 (227)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 343
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-15 Score=102.26 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccc-eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCC-ccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTT-LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR-ITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~-i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g-~~i~gr 227 (227)
.+..+|||+|||... ++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|+|+
T Consensus 6 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAV--TADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECCCTTC--CHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 456799999997665 79999999999998 6666662 479999999999999999999999 999885
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=2.5e-15 Score=99.88 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=59.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccc----c-------ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEV----T-------TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 221 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~----g-------~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g 221 (227)
.+..+|||+|||... ++++|+++|+.| | .|.++.+.++ +|||||+|.+.++|.+|+ .|||
T Consensus 4 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 4 GSARRLYVGNIPFGI--TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGGEEEEESCCTTC--CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 356789999997655 789999999999 8 8999999766 699999999999999999 9999
Q ss_pred ccccCC
Q psy1680 222 ITVDGL 227 (227)
Q Consensus 222 ~~i~gr 227 (227)
..|+||
T Consensus 75 ~~~~g~ 80 (87)
T 2hzc_A 75 IIFQGQ 80 (87)
T ss_dssp CEETTE
T ss_pred CEECCe
Confidence 999986
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5e-15 Score=98.24 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=54.3
Q ss_pred CCCCc-ceeccCCCCCCCChhh----HHhhhcccc-ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 153 GEGPG-GFRNNNGPNRSNSMND----HGLMVTEVT-TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 153 ~~~~~-l~v~nl~~~~~~~~~~----l~~~f~~~g-~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
+|+.| |||+|||... ++++ |+++|++|| .|.+| |+ |+|||.|.+.++|.+|++.|||..|.|
T Consensus 6 ~p~~T~lYV~NL~~~~--~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 6 SGCHTLLYVYNLPANK--DGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp CCSSEEEEEESCCTTS--CHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred CCcceEEEEeCCCCcC--CHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 45666 9999997666 5565 668999995 99998 34 999999999999999999999999998
Q ss_pred C
Q psy1680 227 L 227 (227)
Q Consensus 227 r 227 (227)
|
T Consensus 74 r 74 (96)
T 2diu_A 74 N 74 (96)
T ss_dssp S
T ss_pred c
Confidence 7
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=1.8e-14 Score=110.06 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=62.0
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..+|||+|||... ++++|+++|++||.|.+|+|+++.. +.++|||||+|.+.++|.+|++.++. .|+||
T Consensus 109 ~~~l~V~nLp~~~--t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr 177 (193)
T 2voo_A 109 NRSVYIKGFPTDA--TLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQ-KYKET 177 (193)
T ss_dssp HTEEEEECCCTTC--CHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTC-EETTE
T ss_pred cCEEEecCCCCcC--CHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCC-eECCE
Confidence 4689999997655 7999999999999999999999964 99999999999999999999987764 88875
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=2.1e-14 Score=98.86 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCC-----CCCHHHHHhcccCC-CeEEEEEeecCCC-CCeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 10 TEPPYTAFVGNLPN-----GITQGDVERFFPEQ-KLVSVRLVKDKET-DRFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 10 ~~~~~~l~V~nLp~-----~~t~~~l~~~f~~~-~i~~v~i~~~~~~-~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
..+++.|+|+||.. +-++++|+++|++| .|.+|.|++++.+ ++++|+|||+|.+.++|.+|++ ||| ..++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG-~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG-RYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT-CEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC-CEECC
Confidence 46789999999963 23789999999999 9999999998654 6889999999999999999999 999 99999
Q ss_pred eEeEEEecCC
Q psy1680 82 LQVRLDIADG 91 (227)
Q Consensus 82 ~~l~v~~~~~ 91 (227)
+.|.|.++.+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 348
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=5.3e-15 Score=108.99 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=57.6
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.+|||+||+++. ++++|+++|++||.|++|+|..+. ++|||||+|.+.++|.+|++.|||..|.|
T Consensus 47 l~l~VgNL~~~v--ted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 47 LRIIVENLFYPV--TLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp EEEEECSCCSCC--CHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred EEEEEeCcCCCC--CHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 458899996554 899999999999999999987542 57899999999999999999999999965
No 349
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=7e-15 Score=104.47 Aligned_cols=64 Identities=9% Similarity=0.054 Sum_probs=56.9
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccce-EEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGF-CYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~-afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
-.|||+||+++. ++++|+++|++||.|.+|+|+.+. +|| |||+|.+.++|.+|++.|||..|.|
T Consensus 29 L~I~V~NL~~~v--te~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 29 LRIIVENLFYPV--TLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEEESCCSCC--CHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EEEEECCCCCCC--CHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 357799997655 899999999999999999987653 577 9999999999999999999999976
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.6e-14 Score=100.32 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=56.4
Q ss_pred CCCc--ceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccce-EEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 154 EGPG--GFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGF-CYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 154 ~~~~--l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~-afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
++.+ |||+||+... ++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.|
T Consensus 22 ps~vl~l~V~NL~~~v--t~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPI--TVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp CCSEEEEEEESCCSCC--CHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred CCcEEEEEEcCcCCCC--CHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 4444 5799996555 89999999999999999998652 286 9999999999999999999999987
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=1.4e-14 Score=102.43 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~ 87 (227)
..+.++|||+|| ++++++|+++|++| .|..|.|. +++|||||+|.+.++|.+||+ +++ ..+.|+.|.|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng-~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNG-TQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTT-CBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 456799999996 69999999999999 99999886 347999999999999999998 999 99999999999
Q ss_pred ecCCCCC
Q psy1680 88 IADGKRN 94 (227)
Q Consensus 88 ~~~~~~~ 94 (227)
++.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987654
No 352
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=7.2e-15 Score=98.27 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=48.4
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHH
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 214 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~ 214 (227)
++..+|||+|||+++ ++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+
T Consensus 9 ~~~~~l~V~~Lp~~~--te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDM--TAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp --CCEEEEESCCTTC--CHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH
Confidence 467899999997665 79999999999999999999885 68999999999999984
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=9.1e-15 Score=103.41 Aligned_cols=65 Identities=9% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.+..+|||+|+ + .++++|+++|++||.|.+|.|. .++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 37 ~~~~~lfVgnl--~--~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 37 RKGNTLYVYGE--D--MTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCCEEEEECS--S--CCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCEEEEcCC--C--CCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45789999996 3 4899999999999999999985 4589999999999999999999999999986
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=99.91 Aligned_cols=72 Identities=14% Similarity=0.009 Sum_probs=60.4
Q ss_pred CCCCCcceeccCCCCCC---------CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 152 GGEGPGGFRNNNGPNRS---------NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 152 ~~~~~~l~v~nl~~~~~---------~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
..++++|+|.||..+.. .++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 35788999999943321 135799999999999999966 553 37999999999999999999999999
Q ss_pred cccCC
Q psy1680 223 TVDGL 227 (227)
Q Consensus 223 ~i~gr 227 (227)
.|+||
T Consensus 88 ~~~gr 92 (112)
T 2dit_A 88 WFGGR 92 (112)
T ss_dssp EETTE
T ss_pred EECCc
Confidence 99986
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-13 Score=94.69 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=71.4
Q ss_pred CCCCCCCCCceEEEcCCCCCCC-----------HHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH
Q psy1680 5 QKTLPTEPPYTAFVGNLPNGIT-----------QGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72 (227)
Q Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t-----------~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~ 72 (227)
..+....++++|+|+||....+ +++|+++|++| .|..|.| .++ .++|||||+|.+.++|.+|+.
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHH
Confidence 3444567789999999954432 57999999999 9999966 443 368999999999999999998
Q ss_pred -hCCCceeCCeEeEEEecCCCCC
Q psy1680 73 -KDGRITVDGLQVRLDIADGKRN 94 (227)
Q Consensus 73 -~~~~~~~~g~~l~v~~~~~~~~ 94 (227)
+|+ ..|+|+.|.|.++.++..
T Consensus 83 ~lng-~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 83 TLDG-RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HSTT-CEETTEECEEEECCSCCC
T ss_pred HcCC-CEECCcEEEEEEeCCCCC
Confidence 999 999999999999987654
No 356
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.50 E-value=3.4e-14 Score=111.43 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=62.5
Q ss_pred CCCCcceeccCCC-CCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 153 GEGPGGFRNNNGP-NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 153 ~~~~~l~v~nl~~-~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++.+|||+|||+ .. ++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|++.|+|..|+||
T Consensus 32 ~~~~~l~V~nLp~~~~--te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 32 AGNSVLLVSNLNPERV--TPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp CCCSEEEEESCCTTTC--CHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCEEEEeCCCcccC--CHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 5678999999976 55 789999999999999999999985 79999999999999999999999999886
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=4.3e-14 Score=110.73 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=69.0
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCce
Q psy1680 10 TEPPYTAFVGNLPNGI---------TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRIT 78 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~---------t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~ 78 (227)
....++|||+||+..+ ++++|+++|++| .|..|.|+.. +|||||+|.+.++|+.|++ |++ ..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g-~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSN-QT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTT-CC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCC-CE
Confidence 4567999999999998 799999999999 9999999854 8999999999999999999 999 99
Q ss_pred e------------CCeEeEEEecCCCCC
Q psy1680 79 V------------DGLQVRLDIADGKRN 94 (227)
Q Consensus 79 ~------------~g~~l~v~~~~~~~~ 94 (227)
| .|+.|.|.++.....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999986543
No 358
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=6.7e-14 Score=115.25 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=59.8
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
.|+++|||+|++.....++++|+++|++||.|.+|.+.+ +||||||+|.+.++|++|++.|||.++-
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 678899999976566679999999999999999988754 4799999999999999999999999873
No 359
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=6.2e-14 Score=96.39 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=50.1
Q ss_pred hhHHhhh-ccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 172 NDHGLMV-TEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 172 ~~l~~~f-~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
++|+++| ++||.|.+|.|+++.. +.++|||||+|.+.++|.+|++.|||..++||
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 5556666 9999999999999865 78999999999999999999999999999996
No 360
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=2.5e-13 Score=109.55 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC-CeEeEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-GLQVRL 86 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~-g~~l~v 86 (227)
..+.++|||+|||..+++++|+++|++| .|..|.|+.++ +|||||+|.+.++|.+|++ +|+ ..+. |+.|+|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l~v 277 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQG-FKITQNNAMKI 277 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCC-cEeCCCCEEEE
Confidence 3467899999999999999999999999 99999998653 5899999999999999999 999 9999 999999
Q ss_pred EecC
Q psy1680 87 DIAD 90 (227)
Q Consensus 87 ~~~~ 90 (227)
.+++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9985
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=4.8e-14 Score=110.51 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=58.9
Q ss_pred CCCCcceeccCCCCCC-------CChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 153 GEGPGGFRNNNGPNRS-------NSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~-------~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
....+|||+||+...+ .++++|+.+|++||.|++|+|+.+ +|||||+|.+.++|+.|+++|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578999999976541 268999999999999999999864 79999999999999999999999999
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-14 Score=96.14 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=49.1
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHH
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 215 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~A 215 (227)
++++|||+|||..+ ++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|
T Consensus 4 ~~~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDM--TEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CCCEEEEESCCSSS--CHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT
T ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH
Confidence 56799999997655 79999999999999999999876 589999999999999864
No 363
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.46 E-value=3.1e-14 Score=99.30 Aligned_cols=71 Identities=11% Similarity=-0.059 Sum_probs=59.6
Q ss_pred CCCCcceeccCCCCC--------CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 153 GEGPGGFRNNNGPNR--------SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~--------~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
.++++|.+.|+=.+. .+.++||+++|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||+.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 357789999983221 23457889999999999999997763 489999999999999999999999999
Q ss_pred cCC
Q psy1680 225 DGL 227 (227)
Q Consensus 225 ~gr 227 (227)
+||
T Consensus 81 ~GR 83 (114)
T 3s6e_A 81 AGK 83 (114)
T ss_dssp TTE
T ss_pred CCE
Confidence 997
No 364
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=7.7e-14 Score=106.73 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=60.8
Q ss_pred CCcceeccCCC-CCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGP-NRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~-~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++|||+|||+ .. ++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 3 ~~~l~v~nlp~~~~--~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERV--TPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CCEEEEECCCSSSC--CHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CcEEEEeCCCcccC--CHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 56899999976 55 789999999999999999999885 78999999999999999999999999886
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=4.2e-13 Score=92.33 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHhcccCC-CeEEEEEeecCCC--CCeecEEEEEeCCHHHHHHHHH-hCCC
Q psy1680 11 EPPYTAFVGNL--PNGIT--------QGDVERFFPEQ-KLVSVRLVKDKET--DRFKGFCYVEFVDVENLRQALL-KDGR 76 (227)
Q Consensus 11 ~~~~~l~V~nL--p~~~t--------~~~l~~~f~~~-~i~~v~i~~~~~~--~~~~g~afv~f~~~~~a~~al~-~~~~ 76 (227)
.+++.|.+.|+ |..+. +++|++.|++| .|.+|.|++++.+ ++++|+|||+|.+.++|.+|+. |||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG- 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG- 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT-
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC-
Confidence 46889999998 33333 36899999999 9999999988754 4678999999999999999999 999
Q ss_pred ceeCCeEeEEEecCC
Q psy1680 77 ITVDGLQVRLDIADG 91 (227)
Q Consensus 77 ~~~~g~~l~v~~~~~ 91 (227)
..++|+.|.|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999764
No 366
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=7.6e-13 Score=105.71 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-h-CCCceeC---CeEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K-DGRITVD---GLQV 84 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~-~~~~~~~---g~~l 84 (227)
.+..+|||+|||..+|+++|+++|+.| .|..|.|+.+ .+++++|||||+|.+.++|.+||. + ++ ..+. +++|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~-~~~~~~~~r~i 171 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDG-AFLLTTTPRPV 171 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHS-CEESSSSCCBC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCC-eEEecCCCceE
Confidence 456899999999999999999999999 9999999999 579999999999999999999999 7 55 5555 8999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|.++.+...
T Consensus 172 ~v~~~~~~~~ 181 (261)
T 3sde_A 172 IVEPMEQFDD 181 (261)
T ss_dssp EEEECCCEES
T ss_pred EEeeccccCc
Confidence 9999886543
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=1.4e-12 Score=91.49 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCC--CC---CHHHHHhcccCC-CeEEEEEeecCC----CCCeecEEEEEeCCHHHHHHHHH-hCCCcee
Q psy1680 11 EPPYTAFVGNLPN--GI---TQGDVERFFPEQ-KLVSVRLVKDKE----TDRFKGFCYVEFVDVENLRQALL-KDGRITV 79 (227)
Q Consensus 11 ~~~~~l~V~nLp~--~~---t~~~l~~~f~~~-~i~~v~i~~~~~----~~~~~g~afv~f~~~~~a~~al~-~~~~~~~ 79 (227)
++++.|++.|+-. ++ .+++|++.|++| .|.+|.|++++. +++++|++||+|.+.++|.+|+. ||| ..+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG-r~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG-RWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT-CEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC-CEE
Confidence 4789999999942 22 357899999999 999999999864 46788999999999999999999 999 999
Q ss_pred CCeEeEEEecCC
Q psy1680 80 DGLQVRLDIADG 91 (227)
Q Consensus 80 ~g~~l~v~~~~~ 91 (227)
+|+.|.|.++..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999999754
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=1.2e-13 Score=94.87 Aligned_cols=70 Identities=13% Similarity=0.340 Sum_probs=61.3
Q ss_pred EcCCCCCCCHHHHHhcc------------cCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeE
Q psy1680 18 VGNLPNGITQGDVERFF------------PEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 83 (227)
Q Consensus 18 V~nLp~~~t~~~l~~~f------------~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~ 83 (227)
+.|||..+++++|+++| ++| .|..|.|++++. ++++|||||+|.+.++|.+|+. +|| ..++|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng-~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNN-RWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTT-CEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCC-CEECCEE
Confidence 55677777777777666 999 999999998854 7899999999999999999999 999 9999999
Q ss_pred eEEEec
Q psy1680 84 VRLDIA 89 (227)
Q Consensus 84 l~v~~~ 89 (227)
|.|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999886
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.7e-11 Score=81.11 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=62.0
Q ss_pred CceEEEcCCC-------CCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEe
Q psy1680 13 PYTAFVGNLP-------NGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 84 (227)
Q Consensus 13 ~~~l~V~nLp-------~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l 84 (227)
.++|-|.-.. ..+++++|+++|++| .|..|.|+ ++++|||||+|.+.++|..||+. . ..+.+++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~-~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-E-VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-C-CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-c-CCCCCCeE
Confidence 5667666443 458999999999999 99999997 36689999999999999999983 2 34579999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|.++.++..
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999887654
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=1.1e-11 Score=102.19 Aligned_cols=76 Identities=16% Similarity=0.275 Sum_probs=64.8
Q ss_pred CCCCCCceEEEcC--CCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeC---
Q psy1680 8 LPTEPPYTAFVGN--LPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD--- 80 (227)
Q Consensus 8 ~~~~~~~~l~V~n--Lp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~--- 80 (227)
....++.+|||+| |+..+|+++|+++|++| .|..|.+.. +||||||+|.+.++|++||+ ||| ..+.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG-~~~~~~~ 85 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNG-KEVVDDL 85 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTT-CEEECTT
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCC-Ccccccc
Confidence 3568889999999 57899999999999999 999887753 37999999999999999999 999 8773
Q ss_pred Ce--EeEEEecC
Q psy1680 81 GL--QVRLDIAD 90 (227)
Q Consensus 81 g~--~l~v~~~~ 90 (227)
|+ .|.|.++.
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 34 57777764
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.6e-11 Score=82.41 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=44.4
Q ss_pred CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCC
Q psy1680 168 SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 221 (227)
Q Consensus 168 ~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g 221 (227)
..++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 45899999999999999999997 35789999999999999999998765
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=1.2e-10 Score=80.97 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCCCCC----------HHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCc
Q psy1680 10 TEPPYTAFVGNLPNGIT----------QGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRI 77 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t----------~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~ 77 (227)
..+++.|.+.|+-.... +++|++.|++| .|.+|.|.++. ++|++||+|.+.++|.+|+. ||| .
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG-~ 78 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHG-R 78 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTT-C
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCC-C
Confidence 34678899999843322 24789999999 99999997653 48999999999999999999 999 9
Q ss_pred eeCCeEeEEEecCC
Q psy1680 78 TVDGLQVRLDIADG 91 (227)
Q Consensus 78 ~~~g~~l~v~~~~~ 91 (227)
.++|+.|.|.++..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999999864
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=9.2e-11 Score=77.06 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=56.2
Q ss_pred CCCCCcceeccCCC--CCCCCh----hhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 152 GGEGPGGFRNNNGP--NRSNSM----NDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 152 ~~~~~~l~v~nl~~--~~~~~~----~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
+||..||+|...+. ..++.. .+|.+.|+.||.|..+++..|+ +||+|.+.++|.+|++ |||..|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 47788999999862 122222 6789999999999999999874 8999999999999998 9999999
Q ss_pred CC
Q psy1680 226 GL 227 (227)
Q Consensus 226 gr 227 (227)
||
T Consensus 75 Gr 76 (91)
T 2dnr_A 75 NR 76 (91)
T ss_dssp TE
T ss_pred Ce
Confidence 86
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.4e-10 Score=79.86 Aligned_cols=67 Identities=7% Similarity=0.051 Sum_probs=58.0
Q ss_pred CCCCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcC-HHHHHHHHHHc--CCccccC
Q psy1680 153 GEGPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVD-VENLRQALLKD--GRITVDG 226 (227)
Q Consensus 153 ~~~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~-~~~a~~Al~~l--~g~~i~g 226 (227)
+++..|+|+||+... +++++|+++|+.||.|..|.+.++.. .|||+|.+ .++|..|++++ ++.+|+|
T Consensus 16 ~~G~il~v~~l~~~~-~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQ-TCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCCEEEEEESCCSS-CCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cCCeEEEEecCCCCc-CCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 567889999997651 37999999999999999999999865 59999999 89999999999 4777765
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.07 E-value=1.9e-10 Score=89.56 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=53.5
Q ss_pred CChhhHHhhhccccceEEEEEeecCC----CCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 169 NSMNDHGLMVTEVTTLVSVRLVKDKE----TDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 169 ~~~~~l~~~f~~~g~i~~v~i~~d~~----t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+.+++|++.|++||.|.++.|+++.. ++.++|++||+|.+.++|.+|++.|||+.++||
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 45689999999999999999996544 448999999999999999999999999999998
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.7e-09 Score=75.51 Aligned_cols=76 Identities=8% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCCCCCceEEEcCCCCC-CCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCC-HHHHHHHHH-h--CCCceeCC
Q psy1680 8 LPTEPPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD-VENLRQALL-K--DGRITVDG 81 (227)
Q Consensus 8 ~~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~-~~~a~~al~-~--~~~~~~~g 81 (227)
.+-++.+.|||+||+.. +++++|+++|++| +|..|.++++.. .|||.|.+ ..+|..|+. + .+ ..|.+
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~-~~i~g 85 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGN-LQLRN 85 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSC-BCTTS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCC-cEEeC
Confidence 45678899999999999 9999999999999 999999988754 59999999 899999998 6 46 88999
Q ss_pred eEeEEEecC
Q psy1680 82 LQVRLDIAD 90 (227)
Q Consensus 82 ~~l~v~~~~ 90 (227)
..+.+....
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 988887765
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.5e-10 Score=76.45 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=56.7
Q ss_pred CCCCCCcceeccCCCC---CCCC----hhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCcc
Q psy1680 151 RGGEGPGGFRNNNGPN---RSNS----MNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT 223 (227)
Q Consensus 151 ~~~~~~~l~v~nl~~~---~~~~----~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~ 223 (227)
-+||..||+|..++.. ..+- ..+|.+.|+.||.|..+++..|+ +||+|.+.++|.+||+ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3478889999998632 1111 25688999999999999999984 9999999999999999 99999
Q ss_pred ccCC
Q psy1680 224 VDGL 227 (227)
Q Consensus 224 i~gr 227 (227)
|+||
T Consensus 82 v~Gr 85 (95)
T 1ufw_A 82 VKGR 85 (95)
T ss_dssp ETTE
T ss_pred eCCe
Confidence 9986
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-09 Score=71.20 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=62.0
Q ss_pred CCCCceEEEcCCC----CCCCH----HHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeC
Q psy1680 10 TEPPYTAFVGNLP----NGITQ----GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 80 (227)
Q Consensus 10 ~~~~~~l~V~nLp----~~~t~----~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~ 80 (227)
-++..+|+|.-.+ .++-. .+|.+.|++| .|..++++.++ +||+|.+.++|.+||++|| ..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG-~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNG-KELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTT-CEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCC-eEeC
Confidence 3567788887665 23433 5788999999 99999999763 8999999999999999999 9999
Q ss_pred CeEeEEEecCC
Q psy1680 81 GLQVRLDIADG 91 (227)
Q Consensus 81 g~~l~v~~~~~ 91 (227)
|+.|+|+++++
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999999875
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=7.1e-09 Score=68.41 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=62.0
Q ss_pred CCCCCceEEEcCCCCC-----CCH----HHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCce
Q psy1680 9 PTEPPYTAFVGNLPNG-----ITQ----GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT 78 (227)
Q Consensus 9 ~~~~~~~l~V~nLp~~-----~t~----~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~ 78 (227)
.-++..+|+|.-++.. +-. .+|.+.|++| .|..++++.++ +||+|.+.++|.+||+++| ..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG-~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDG-MK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGG-SE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCC-ee
Confidence 3467789999877643 322 4588899999 99999999773 9999999999999999999 99
Q ss_pred eCCeEeEEEecCC
Q psy1680 79 VDGLQVRLDIADG 91 (227)
Q Consensus 79 ~~g~~l~v~~~~~ 91 (227)
++|+.|+|.+..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998653
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=3.4e-08 Score=76.70 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=58.1
Q ss_pred CCHHHHHhcccCC-CeEEEEEeecC----CCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEeEEEecC
Q psy1680 25 ITQGDVERFFPEQ-KLVSVRLVKDK----ETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 90 (227)
Q Consensus 25 ~t~~~l~~~f~~~-~i~~v~i~~~~----~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l~v~~~~ 90 (227)
-.+++|++.|++| .|..+.|+++. .+++++|++||+|.+.++|.+|+. ||| ..++|+.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g-r~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG-RWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT-CBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC-ceECCeEEEEEEcC
Confidence 3457899999999 99999998654 445899999999999999999999 999 99999999999975
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.2e-07 Score=63.91 Aligned_cols=66 Identities=14% Similarity=-0.058 Sum_probs=59.8
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhccc-----cceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTEV-----TTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~~-----g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
..++|-+-+||+.+ +...|+.+.+++ |.|+.|.|..|. +-|+|+|.+...|-+|..+|+|.+|+||
T Consensus 20 ~~rtiaL~~ipDtv--ndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 20 LETLICLFPLSDKV--SPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTSCEEEECCCTTC--CHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CCcEEEEecCCCCC--CHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCe
Confidence 36789999998776 678899999999 999999999996 5799999999999999999999999986
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.88 E-value=5.3e-05 Score=51.03 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=62.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC------CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCe
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 82 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~------~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~ 82 (227)
.+..++|-+-|||..+++..|+.+.+++ .+..+.+..| -+-|+|+|.+...|-+|.- ++| .+|.|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G-~ef~gr 90 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNG-SQFQGK 90 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSS-EEETTE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCC-eeecCe
Confidence 3457888889999999999999888765 3677888776 4689999999999999986 999 999999
Q ss_pred EeEEEec
Q psy1680 83 QVRLDIA 89 (227)
Q Consensus 83 ~l~v~~~ 89 (227)
.|++.-.
T Consensus 91 ~Lr~gTv 97 (117)
T 2l9w_A 91 VIRSGTI 97 (117)
T ss_dssp EEEEECH
T ss_pred EEEecCH
Confidence 9998653
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.0003 Score=46.92 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=61.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcccC----C--CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCCeEe
Q psy1680 11 EPPYTAFVGNLPNGITQGDVERFFPE----Q--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 84 (227)
Q Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~----~--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g~~l 84 (227)
....+|.|.|||+.+.++.|+-+|+. - +|..+.... +-|+|+|.+.+.|++.|+... +.|++.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~-H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQAD-HELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSC-CBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCc-ceecCeEE
Confidence 34689999999999999999999976 2 566666542 579999999999999999766 89999999
Q ss_pred EEEecCCCCC
Q psy1680 85 RLDIADGKRN 94 (227)
Q Consensus 85 ~v~~~~~~~~ 94 (227)
.|....++..
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 9988665543
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.55 E-value=0.00029 Score=46.43 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=42.5
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
..+++ .+|... -..||.++|++||.|. |+++-|- .|||.|.+++.|..||..+
T Consensus 17 HVf~l-~FP~ew--Kt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEW--KTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTC--CHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhh--hhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 44555 776544 6789999999999555 7887773 6999999999999999876
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.42 E-value=0.00074 Score=44.33 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=52.8
Q ss_pred ceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCC--CeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETD--RFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
++|.|++||+.+|++++.+.++.+ .+.....+..+.+. ..-+-|+|.|.+.+++....+ ++| ..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g-~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG-YVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT-CEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC-cEEEc
Confidence 578999999999999999999998 77666555443332 233679999999999999998 999 66543
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.00022 Score=47.75 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=55.1
Q ss_pred CCcceeccCCCCC---CCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 155 GPGGFRNNNGPNR---SNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 155 ~~~l~v~nl~~~~---~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
+++|+|.||+..+ +...+.++++|..|+.+.....++... -..|.|.++++|.+|...|++..++|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCc
Confidence 5689999997533 222367899999999999898888753 478999999999999999999999874
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.35 E-value=0.00057 Score=45.04 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=46.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-h
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K 73 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~ 73 (227)
....+.++| ++|+.+.-.||.++|+.|.-..|.++-|. .|||.|.+.+.|..||. +
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345577777 99999999999999999944456666553 69999999999999998 5
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.17 E-value=0.00047 Score=45.55 Aligned_cols=53 Identities=9% Similarity=0.079 Sum_probs=42.4
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
.+++ .+|+.. -..||.++|++||.|. |+++-|- .|||.|.+++.|..||..+.
T Consensus 8 V~~l-~FP~ew--Kt~Di~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEW--KTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTC--CHHHHHHHTTTSEEEE-EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhh--hhHHHHHHHhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4445 775544 6789999999999554 8888873 69999999999999999764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.00 E-value=0.003 Score=41.40 Aligned_cols=67 Identities=6% Similarity=-0.041 Sum_probs=55.4
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCc--ccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDR--FKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~--~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
+|.|++||+.+ |++++.+..++...+.....+....+.+ .-.-|+|.|.+.+++..-.+.++|+.+-
T Consensus 3 KvVIRrLPP~L--teeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 3 KVVIRRLPPTL--TKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp EEEEEEECTTC--CHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 68899999888 7899999999988887777776654443 2356999999999999999999998773
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0016 Score=44.81 Aligned_cols=61 Identities=10% Similarity=-0.035 Sum_probs=46.3
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~g 226 (227)
.-|.|...| .. ..+.+...|+.||.|.+..... ...+-.|.|.+..+|++||.+ ||..|+|
T Consensus 25 ~wVtVFGFp--~~-~~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 25 TWVTVFGFP--QA-SASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp GEEEEECCC--GG-GHHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CEEEEECCC--HH-HHHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 345566654 33 3577899999999999887622 246899999999999999988 6777764
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.93 E-value=0.0022 Score=42.42 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=50.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCC--CeecEEEEEeCCHHHHHHHHH-hCCCceeCC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETD--RFKGFCYVEFVDVENLRQALL-KDGRITVDG 81 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~al~-~~~~~~~~g 81 (227)
-+-+|.|+.||+.+||+++.+.++.+ .+.....+..+.+. ..-.-|+|.|.+.+++....+ .+| ..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g-~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG-YIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT-EEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC-cEEEe
Confidence 35789999999999999999999888 75333222222221 122579999999999999998 999 66643
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.90 E-value=0.002 Score=43.04 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=59.5
Q ss_pred CCceEEEcCCCCCC-CH----HHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCCCceeCCeEe
Q psy1680 12 PPYTAFVGNLPNGI-TQ----GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 84 (227)
Q Consensus 12 ~~~~l~V~nLp~~~-t~----~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~~~~~~g~~l 84 (227)
-.++|+|.||+..+ +. +.++.+|..| ++......+. -.=..|.|.+.++|.+|-. +++ ..+.|+.|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~-~~f~g~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHK-TEFLGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTT-SEETTEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhcc-ceecCcee
Confidence 35789999998754 22 4678999999 8877766643 2246899999999999998 999 99999999
Q ss_pred EEEecCCC
Q psy1680 85 RLDIADGK 92 (227)
Q Consensus 85 ~v~~~~~~ 92 (227)
+|.++.+.
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99998743
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.001 Score=43.96 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=45.4
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD 74 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~ 74 (227)
.+.++| ++|+++.-.||.++|+.|.-..|.++-|. .|||.|.+.+.|..||. +.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 466777 89999999999999999955567776653 69999999999999998 54
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.0056 Score=40.79 Aligned_cols=55 Identities=11% Similarity=-0.020 Sum_probs=44.4
Q ss_pred CCCcceeccCCCCCCCChhhHHhhhcc-----ccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHH
Q psy1680 154 EGPGGFRNNNGPNRSNSMNDHGLMVTE-----VTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 218 (227)
Q Consensus 154 ~~~~l~v~nl~~~~~~~~~~l~~~f~~-----~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~ 218 (227)
...+|.|.|||+.. .++.|.-+|+. -|.|.++.... +-|+|+|.+.+.|++.|+.
T Consensus 7 ~~~~I~V~~lPp~~--~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAV--PDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTS--CHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCC--ChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 35689999998766 46788888987 24888887644 3699999999999999987
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.00 E-value=0.031 Score=38.36 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=58.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCCCceeCC-eEeEEE
Q psy1680 10 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG-LQVRLD 87 (227)
Q Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~~~~~~g-~~l~v~ 87 (227)
....+-|.|-+.|+.. -..|...|++| .|.+.... ....+-.|.|.+..+|++||..|| ..+++ ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG-~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDG-RIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTT-CEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCC-eEecCCEEEEEE
Confidence 3446888899999885 46677889999 99887762 124699999999999999999999 99985 677777
Q ss_pred ecC
Q psy1680 88 IAD 90 (227)
Q Consensus 88 ~~~ 90 (227)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 754
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.71 E-value=0.023 Score=37.51 Aligned_cols=69 Identities=4% Similarity=-0.085 Sum_probs=51.5
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCc--ccceEEEEEcCHHHHHHHHHHcCCcccc
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDR--FKGFCYVEFVDVENLRQALLKDGRITVD 225 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~--~~g~afV~F~~~~~a~~Al~~l~g~~i~ 225 (227)
+-+|.|+.||+.+ |++++.+.+++.-.+.....+....+.+ .-.-|+|.|.+.++...-.+..+|..+-
T Consensus 9 ~~KvVIRrLPP~L--tee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGL--TKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCS--CHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCC--CHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4579999999888 7899988888766654444444333222 1246899999999999999999998774
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.47 E-value=0.017 Score=49.17 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=40.3
Q ss_pred CCcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHH
Q psy1680 155 GPGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 218 (227)
Q Consensus 155 ~~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~ 218 (227)
.+.|+|. .|... ++.+|.+.|+.||.|.++.+-++. .-||.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~--~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKI--SENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC-----CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCC--CHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3678997 55444 678899999999999999886654 26999999999988877644
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.20 E-value=0.055 Score=37.65 Aligned_cols=78 Identities=13% Similarity=0.270 Sum_probs=54.6
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCC-CeEE-EEEeec--------CCCC-----CeecEEEEEeCCHHHHHHHHHhCCC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVS-VRLVKD--------KETD-----RFKGFCYVEFVDVENLRQALLKDGR 76 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~-v~i~~~--------~~~~-----~~~g~afv~f~~~~~a~~al~~~~~ 76 (227)
...-|.|-+.|+..+ ..+-+.|++| .|.+ ..+.+. +.+. ....+-.|+|.+..+|.+||..||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG- 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG- 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT-
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC-
Confidence 345677888987765 4566788888 7765 222110 0000 124688999999999999999999
Q ss_pred ceeCCeEeEEEecCC
Q psy1680 77 ITVDGLQVRLDIADG 91 (227)
Q Consensus 77 ~~~~g~~l~v~~~~~ 91 (227)
..|+|..|-|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888888753
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.88 E-value=0.031 Score=38.91 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=42.6
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEE-EEEeecC--------CCC-----cccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVS-VRLVKDK--------ETD-----RFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~-v~i~~d~--------~t~-----~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
-|.|...|+. ....+-+.|++||.|.+ ....++. .+. ...++--|+|++..+|.+||... |.
T Consensus 9 ~VtVFGFp~~---~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N-G~ 84 (132)
T 3p3d_A 9 AILVFGYPET---MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN-GA 84 (132)
T ss_dssp EEEEECCCGG---GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT-TC
T ss_pred EEEEEecCHH---HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC-Ce
Confidence 3566666533 35778899999998876 2222100 000 12467899999999999999764 45
Q ss_pred cccC
Q psy1680 223 TVDG 226 (227)
Q Consensus 223 ~i~g 226 (227)
.|+|
T Consensus 85 ii~G 88 (132)
T 3p3d_A 85 VFNG 88 (132)
T ss_dssp EETT
T ss_pred EeCc
Confidence 5655
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.66 E-value=0.027 Score=47.99 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=42.3
Q ss_pred CceEEEcCCCCCCCHHHHHhcccCC-CeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHHhCC
Q psy1680 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75 (227)
Q Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~~~~ 75 (227)
.+.|+|. .|..+++.+|.++|++| +|..+..-+++ .-||.|+|.+.+++..++....
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccC
Confidence 4789997 79999999999999999 99998887542 2599999999999998876434
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.78 E-value=3.9 Score=35.25 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=44.0
Q ss_pred CCceEEEcCCCCCCCHHHHHhcccCCCeEEEEEeecCCCCCeecEEEEEeCCHHHHHHHHH-hCC
Q psy1680 12 PPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDG 75 (227)
Q Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~al~-~~~ 75 (227)
.++.++|+ +|..|...+|.++|+.|.-..|.++-+ ..|||.|.+.+.|..++. +..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 45677776 999999999999999993345556543 369999999999999998 543
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.99 E-value=2.8 Score=36.19 Aligned_cols=54 Identities=9% Similarity=0.050 Sum_probs=41.2
Q ss_pred CcceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 156 PGGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 156 ~~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
..++|+ +|. .+...+|.+.|+.||.| +|+++-| ..|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~--~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPK--EWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCT--TCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCC--CCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 345554 644 44678999999999954 5776665 369999999999999999884
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.60 E-value=31 Score=24.97 Aligned_cols=59 Identities=20% Similarity=0.084 Sum_probs=36.7
Q ss_pred cceeccCCC-CC------CCChhhHHhhh--ccccceEEEEEeecCCCCcccceEEEEEcCH-HHHHHHHHH
Q psy1680 157 GGFRNNNGP-NR------SNSMNDHGLMV--TEVTTLVSVRLVKDKETDRFKGFCYVEFVDV-ENLRQALLK 218 (227)
Q Consensus 157 ~l~v~nl~~-~~------~~~~~~l~~~f--~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~-~~a~~Al~~ 218 (227)
++.|.|+|. .. -....+|.+.| +.|..+. |+.+-++ ..++|+|.|.|.+. ..-..|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 467777764 11 12336788877 8898766 5545554 35779999999763 344444443
No 404
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=43.85 E-value=31 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.3
Q ss_pred ceEEEEEeecCCCCcccceEEEEEcC
Q psy1680 183 TLVSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 183 ~i~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
.|++|+|.+-...|+-+++|-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788877765557889999999876
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=39.96 E-value=59 Score=19.41 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=24.3
Q ss_pred ceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCccccCC
Q psy1680 183 TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227 (227)
Q Consensus 183 ~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~~i~gr 227 (227)
.|-.|.|.. .|.||+-.. +.|..+++.|++..+.|+
T Consensus 32 ~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~ 67 (76)
T 2g0c_A 32 DIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGK 67 (76)
T ss_dssp GEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---
T ss_pred hccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCc
Confidence 455565533 379999876 568888999998888775
No 406
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=39.63 E-value=24 Score=30.30 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=29.3
Q ss_pred HHhhh--ccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHH
Q psy1680 174 HGLMV--TEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 217 (227)
Q Consensus 174 l~~~f--~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~ 217 (227)
|..+| +.+|.|+++.+..-+. ......+++.|.+.++|.+|++
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHHH
Confidence 44555 3689999998766553 3345567899999888766443
No 407
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=39.29 E-value=38 Score=22.12 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=20.2
Q ss_pred ceEEEEEeecCCCCcccceEEEEEcC
Q psy1680 183 TLVSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 183 ~i~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
.|++|+|.+-...|+-++||-|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788877765557888999999875
No 408
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=36.81 E-value=43 Score=22.08 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=19.7
Q ss_pred ceEEEEEeecCCCCcccceEEEEEcC
Q psy1680 183 TLVSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 183 ~i~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
.|++|+|.+-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57777777665557888999998875
No 409
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=36.42 E-value=27 Score=22.28 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=26.4
Q ss_pred eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 184 i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
|.++.++.. -.||.||++...++...++..+.|.
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 556655543 5799999999999999988877654
No 410
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=28.34 E-value=69 Score=28.38 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=33.9
Q ss_pred hHHhhhc----cccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHc
Q psy1680 173 DHGLMVT----EVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 219 (227)
Q Consensus 173 ~l~~~f~----~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l 219 (227)
||..+|- .+|.|+++.|..-+. ...+.++++.|.+.++|.+|+..+
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 5666652 578999887765543 344567899999999999888754
No 411
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=27.54 E-value=51 Score=28.58 Aligned_cols=43 Identities=7% Similarity=-0.024 Sum_probs=29.2
Q ss_pred HHhhhc--cccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHH
Q psy1680 174 HGLMVT--EVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 217 (227)
Q Consensus 174 l~~~f~--~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~ 217 (227)
|..+|. .+|.|++++|..-+. ......+++.|.+.++|.+|+.
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p~-p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMPN-PGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEEC-CSCEEEEEEEECSTTHHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEeC-CCceEEEEEEcCCHHHHHHHHH
Confidence 344443 488999887766543 2334578899999988777654
No 412
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=27.45 E-value=1.2e+02 Score=19.71 Aligned_cols=42 Identities=19% Similarity=0.405 Sum_probs=23.0
Q ss_pred hhHHhhhccccceEEE-EEeecCCCCcccceEEEEEcCHHHHHH
Q psy1680 172 NDHGLMVTEVTTLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQ 214 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v-~i~~d~~t~~~~g~afV~F~~~~~a~~ 214 (227)
+.|.+++..-..+.-| .+....-.|+++|||.| |++.+.|.+
T Consensus 37 ekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 37 NKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp HHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4444455543333334 35455545677888866 466666654
No 413
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=26.45 E-value=52 Score=23.81 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=23.5
Q ss_pred cccc-eEEEEEcCHHHHHHHHHHcCCccc
Q psy1680 197 RFKG-FCYVEFVDVENLRQALLKDGRITV 224 (227)
Q Consensus 197 ~~~g-~afV~F~~~~~a~~Al~~l~g~~i 224 (227)
...| ..++-|.+.++|++..+..+|..+
T Consensus 107 gpMG~~~l~pFa~k~dAe~Fa~~~GG~Vl 135 (175)
T 2hpu_A 107 GGMGAPEAVPFSSRDEAAAFVLAEGGQVL 135 (175)
T ss_dssp CSSSCCCEEEESCHHHHHHHHHHTEEEEE
T ss_pred CCCCCCcccCcCCHHHHHHHHHHcCCEEE
Confidence 3456 789999999999999999888654
No 414
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=26.41 E-value=75 Score=18.67 Aligned_cols=23 Identities=17% Similarity=0.551 Sum_probs=17.3
Q ss_pred EEEEEeecCCCCcccceEEEEEcC
Q psy1680 185 VSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 185 ~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
..++|+.++. ..+.|++.|.|++
T Consensus 20 R~arlllnrR-ps~~G~~wiKyED 42 (62)
T 1igq_A 20 RPARLILNRR-PPAEGYAWLKYED 42 (62)
T ss_dssp EEEEECTTBC-CSSTTEEEEEETT
T ss_pred hhhhhhhccC-CCcCceEEEEEec
Confidence 4567777643 5678999999987
No 415
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=25.92 E-value=1.4e+02 Score=19.57 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=22.9
Q ss_pred hhHHhhhccccceEEE-EEeecCCCCcccceEEEEEcCHHHHHH
Q psy1680 172 NDHGLMVTEVTTLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQ 214 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v-~i~~d~~t~~~~g~afV~F~~~~~a~~ 214 (227)
+.|.+++..=..+.-| .+....-.|+++|||.| |++.+.|.+
T Consensus 46 ekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 46 GKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp HHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4444455443333333 34445445678888866 566666654
No 416
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.73 E-value=51 Score=19.71 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.6
Q ss_pred cceEEEEEcC
Q psy1680 199 KGFCYVEFVD 208 (227)
Q Consensus 199 ~g~afV~F~~ 208 (227)
+|.++|.|.+
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 6889999986
No 417
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=24.55 E-value=1.5e+02 Score=19.38 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=22.9
Q ss_pred hhHHhhhccccceEEE-EEeecCCCCcccceEEEEEcCHHHHHH
Q psy1680 172 NDHGLMVTEVTTLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQ 214 (227)
Q Consensus 172 ~~l~~~f~~~g~i~~v-~i~~d~~t~~~~g~afV~F~~~~~a~~ 214 (227)
+.|.+++..-..+.-| .+....-.|+++|||.| |++.+.|.+
T Consensus 37 ekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 37 MKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp HHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3444444443333333 35555555678888866 566666654
No 418
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=23.77 E-value=1.1e+02 Score=17.52 Aligned_cols=55 Identities=9% Similarity=-0.057 Sum_probs=37.8
Q ss_pred cceeccCCCCCCCChhhHHhhhccccceEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcC
Q psy1680 157 GGFRNNNGPNRSNSMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220 (227)
Q Consensus 157 ~l~v~nl~~~~~~~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~ 220 (227)
++.|.++ ....-...+...+.. ..|..+.+-.. .+.+.|.|.+.++...+++.++
T Consensus 8 ~~~v~gm--~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 8 VLELSGL--SCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEESS--BCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEECCC--CCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 5667777 444355777777777 77888877443 4567888886677777877653
No 419
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=28.06 E-value=18 Score=23.88 Aligned_cols=50 Identities=6% Similarity=0.022 Sum_probs=30.6
Q ss_pred ChhhHHhhhccccceEEEEEeecCCCCcccceEE--EEEcCHHHHHHHHHHcCC
Q psy1680 170 SMNDHGLMVTEVTTLVSVRLVKDKETDRFKGFCY--VEFVDVENLRQALLKDGR 221 (227)
Q Consensus 170 ~~~~l~~~f~~~g~i~~v~i~~d~~t~~~~g~af--V~F~~~~~a~~Al~~l~g 221 (227)
.++++..+....+ +..+.+.+....|+.. |.. =.|.+.++|.+|+..|-.
T Consensus 35 ~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 35 NYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 3466776666665 3445554433223443 332 278999999999998853
No 420
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=21.37 E-value=1.7e+02 Score=19.01 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=21.8
Q ss_pred hHHhhhccccceEEEEEeecCCCCcccceEEEEEcC
Q psy1680 173 DHGLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVD 208 (227)
Q Consensus 173 ~l~~~f~~~g~i~~v~i~~d~~t~~~~g~afV~F~~ 208 (227)
+|.+.....| |.+-.|..+.+++ .=|++++..+
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC
Confidence 3555666666 8888888875422 2378888877
No 421
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.27 E-value=65 Score=19.23 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=8.4
Q ss_pred cceEEEEEcCH
Q psy1680 199 KGFCYVEFVDV 209 (227)
Q Consensus 199 ~g~afV~F~~~ 209 (227)
++.++|.|++-
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 46799999863
No 422
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.63 E-value=68 Score=22.32 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=26.3
Q ss_pred eEEEEEeecCCCCcccceEEEEEcCHHHHHHHHHHcCCc
Q psy1680 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI 222 (227)
Q Consensus 184 i~~v~i~~d~~t~~~~g~afV~F~~~~~a~~Al~~l~g~ 222 (227)
|.++.++.. ..||-||++...++...++..+.|.
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 556655532 4799999999999999998877764
Done!