Your job contains 1 sequence.
>psy1680
YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVE
FVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNKYNQ
HQGGSFNRDNMRNNSRGGGASSGGGFNDFSRGGEGPGGFRNNNGPNRSNSMNDHGLMVTE
VTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1680
(227 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0262734 - symbol:Rbp2 "RNA-binding protein 2" spec... 297 2.5e-26 1
UNIPROTKB|E1BZH4 - symbol:LOC100859865 "Uncharacterized p... 296 3.2e-26 1
UNIPROTKB|F1NYA2 - symbol:LOC100859865 "Uncharacterized p... 296 3.2e-26 1
UNIPROTKB|A7MBG9 - symbol:WBSCR1 "WBSCR1 protein" species... 296 3.2e-26 1
UNIPROTKB|Q1JPH6 - symbol:EIF4H "Eukaryotic translation i... 296 3.2e-26 1
UNIPROTKB|E2RQG8 - symbol:EIF4H "Uncharacterized protein"... 296 3.2e-26 1
UNIPROTKB|Q15056 - symbol:EIF4H "Eukaryotic translation i... 296 3.2e-26 1
UNIPROTKB|I3L594 - symbol:EIF4H "Uncharacterized protein"... 296 3.2e-26 1
UNIPROTKB|I3LRD5 - symbol:EIF4H "Uncharacterized protein"... 296 3.2e-26 1
MGI|MGI:1341822 - symbol:Eif4h "eukaryotic translation in... 296 3.2e-26 1
RGD|1359222 - symbol:Eif4h "eukaryotic translation initia... 296 3.2e-26 1
UNIPROTKB|Q5XI72 - symbol:Eif4h "Eukaryotic translation i... 296 3.2e-26 1
ZFIN|ZDB-GENE-010328-19 - symbol:eif4h "eukaryotic transl... 295 4.0e-26 1
FB|FBgn0039797 - symbol:CG1340 species:7227 "Drosophila m... 243 7.8e-22 2
ASPGD|ASPL0000069068 - symbol:AN7350 species:162425 "Emer... 184 1.7e-13 1
ZFIN|ZDB-GENE-060629-1 - symbol:eif4ba "eukaryotic transl... 179 8.9e-13 1
UNIPROTKB|F8VSC7 - symbol:EIF4B "Eukaryotic translation i... 169 9.1e-13 1
UNIPROTKB|F8W0K0 - symbol:EIF4B "Eukaryotic translation i... 169 9.1e-13 1
UNIPROTKB|F8VP89 - symbol:EIF4B "Eukaryotic translation i... 169 1.2e-12 1
ZFIN|ZDB-GENE-030131-8563 - symbol:eif4bb "eukaryotic tra... 164 1.2e-12 2
UNIPROTKB|F8VYE9 - symbol:EIF4B "Eukaryotic translation i... 164 3.1e-12 1
UNIPROTKB|G4N5M5 - symbol:MGG_05264 "Translation initiati... 173 3.4e-12 1
MGI|MGI:95304 - symbol:Eif4b "eukaryotic translation init... 172 5.0e-12 1
RGD|1306479 - symbol:Eif4b "eukaryotic translation initia... 172 5.0e-12 1
POMBASE|SPBC18H10.04c - symbol:sce3 "translation initiati... 168 5.6e-12 1
UNIPROTKB|F1MYS7 - symbol:EIF4B "Uncharacterized protein"... 170 8.1e-12 1
UNIPROTKB|E2RKS4 - symbol:EIF4B "Uncharacterized protein"... 170 8.2e-12 1
UNIPROTKB|P23588 - symbol:EIF4B "Eukaryotic translation i... 169 1.0e-11 1
UNIPROTKB|E7EX17 - symbol:EIF4B "Eukaryotic translation i... 169 1.1e-11 1
UNIPROTKB|F8VX11 - symbol:EIF4B "Eukaryotic translation i... 163 1.6e-11 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 139 2.2e-11 2
UNIPROTKB|F8VRU1 - symbol:EIF4B "Eukaryotic translation i... 149 1.2e-10 1
DICTYBASE|DDB_G0284167 - symbol:DDB_G0284167 "RNA-binding... 124 1.4e-10 2
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 148 5.9e-10 1
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 134 5.9e-10 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 126 7.2e-10 2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 135 3.6e-09 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 131 1.0e-08 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 130 1.2e-08 1
FB|FBgn0020660 - symbol:eIF-4B "Eukaryotic initiation fac... 138 1.4e-08 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 129 1.6e-08 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 129 1.6e-08 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 3.5e-08 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 125 4.2e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 125 4.2e-08 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 131 5.1e-08 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 131 6.7e-08 1
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 128 7.8e-08 2
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 110 8.6e-08 2
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 121 1.1e-07 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 121 1.1e-07 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 121 1.2e-07 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 1.7e-07 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 103 2.4e-07 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 131 3.4e-07 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 121 4.2e-07 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 115 4.8e-07 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 115 4.8e-07 1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 108 5.6e-07 2
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 114 6.1e-07 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 114 6.4e-07 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 114 6.4e-07 2
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 127 6.9e-07 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 103 7.0e-07 2
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 106 7.3e-07 2
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 113 7.8e-07 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 113 7.8e-07 1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein... 118 9.6e-07 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 106 1.3e-06 2
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 106 1.3e-06 2
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 106 1.3e-06 2
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 106 1.4e-06 2
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 106 1.4e-06 2
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 106 1.4e-06 2
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 106 1.4e-06 2
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 106 1.4e-06 2
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 121 1.5e-06 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 124 2.9e-06 2
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 114 3.1e-06 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 100 3.1e-06 2
POMBASE|SPBC17G9.05 - symbol:rct1 "RRM-containing cycloph... 125 4.3e-06 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 110 4.8e-06 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 100 4.9e-06 2
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 100 5.0e-06 2
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 100 5.0e-06 2
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 105 6.6e-06 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 121 7.4e-06 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 121 8.4e-06 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 104 8.9e-06 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 104 8.9e-06 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 107 1.1e-05 1
WARNING: Descriptions of 108 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0262734 [details] [associations]
symbol:Rbp2 "RNA-binding protein 2" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005875 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003743
GeneTree:ENSGT00530000063406 CTD:5948 FlyBase:FBgn0262734
ChiTaRS:RBP2 EMBL:BT088437 RefSeq:NP_996487.1 UniGene:Dm.18619
SMR:Q7KUX7 STRING:Q7KUX7 EnsemblMetazoa:FBtr0074281 GeneID:49809
KEGG:dme:Dmel_CG4429 UCSC:CG4429-RC InParanoid:Q7KUX7
GenomeRNAi:49809 NextBio:839902 Uniprot:Q7KUX7
Length = 358
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 58/99 (58%), Positives = 74/99 (74%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R K LPTEPP+ AFVGNLP G+ QGDV + F + ++ VRLVKD+ETD+FKGFCYVEF
Sbjct: 18 RASKQLPTEPPFIAFVGNLPQGLVQGDVIKIFQDFEVKYVRLVKDRETDQFKGFCYVEFE 77
Query: 63 DVENLRQALLKDGRITVDGLQ--VRLDIADGKRNDNKGG 99
++NL +AL DGRI +D L +R+DIAD ++ND GG
Sbjct: 78 TLDNLERALECDGRIKLDDLSAPLRIDIADRRKNDRPGG 116
Score = 144 (55.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 187 VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 227
VRLVKD+ETD+FKGFCYVEF ++NL +AL DGRI +D L
Sbjct: 57 VRLVKDRETDQFKGFCYVEFETLDNLERALECDGRIKLDDL 97
>UNIPROTKB|E1BZH4 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019953
"sexual reproduction" evidence=IEA] [GO:0048589 "developmental
growth" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
OMA:PRTVSEP EMBL:AADN02026007 IPI:IPI00604206 RefSeq:XP_003642445.1
Ensembl:ENSGALT00000001998 GeneID:100859865 KEGG:gga:100859865
Uniprot:E1BZH4
Length = 254
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 57/98 (58%), Positives = 75/98 (76%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R QK LPTEPP+TA+VGNLP QGD++ F + + SVRLV+DKETD+FKGFCYVEF
Sbjct: 29 RKQKELPTEPPFTAYVGNLPFNTVQGDIDAIFKDLSVRSVRLVRDKETDKFKGFCYVEFD 88
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+VE+L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 89 EVESLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 124
Score = 143 (55.4 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DKETD+FKGFCYVEF +VE+L++AL DG + D
Sbjct: 67 SVRLVRDKETDKFKGFCYVEFDEVESLKEALTYDGALLGD 106
>UNIPROTKB|F1NYA2 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 EMBL:AADN02026007 IPI:IPI00581340
ProteinModelPortal:F1NYA2 Ensembl:ENSGALT00000001999 Uniprot:F1NYA2
Length = 146
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 57/98 (58%), Positives = 75/98 (76%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R QK LPTEPP+TA+VGNLP QGD++ F + + SVRLV+DKETD+FKGFCYVEF
Sbjct: 29 RKQKELPTEPPFTAYVGNLPFNTVQGDIDAIFKDLSVRSVRLVRDKETDKFKGFCYVEFD 88
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+VE+L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 89 EVESLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 124
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DKETD+FKGFCYVEF +VE+L++AL DG + D
Sbjct: 67 SVRLVRDKETDKFKGFCYVEFDEVESLKEALTYDGALLGD 106
>UNIPROTKB|A7MBG9 [details] [associations]
symbol:WBSCR1 "WBSCR1 protein" species:9913 "Bos taurus"
[GO:0048589 "developmental growth" evidence=IEA] [GO:0019953
"sexual reproduction" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063406 IPI:IPI00691331
UniGene:Bt.57927 UniGene:Bt.89526 HOVERGEN:HBG018193
EMBL:DAAA02058194 EMBL:BC151552 SMR:A7MBG9
Ensembl:ENSBTAT00000064159 OMA:PNMDFRE Uniprot:A7MBG9
Length = 222
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 91 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
Score = 137 (53.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 69 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>UNIPROTKB|Q1JPH6 [details] [associations]
symbol:EIF4H "Eukaryotic translation initiation factor 4H"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743
EMBL:BT025377 EMBL:BT030478 IPI:IPI00691331 RefSeq:NP_001069220.1
UniGene:Bt.57927 UniGene:Bt.89526 ProteinModelPortal:Q1JPH6
SMR:Q1JPH6 PRIDE:Q1JPH6 GeneID:517409 KEGG:bta:517409 CTD:7458
HOVERGEN:HBG018193 NextBio:20872431 ArrayExpress:Q1JPH6
Uniprot:Q1JPH6
Length = 228
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 91 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
Score = 137 (53.3 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 69 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>UNIPROTKB|E2RQG8 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:PNMDFRE EMBL:AAEX03004233
Ensembl:ENSCAFT00000019083 Uniprot:E2RQG8
Length = 251
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 34 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 93
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 94 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 129
Score = 137 (53.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 72 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 111
>UNIPROTKB|Q15056 [details] [associations]
symbol:EIF4H "Eukaryotic translation initiation factor 4H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006446 "regulation of translational initiation"
evidence=TAS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=TAS] [GO:0016281 "eukaryotic translation
initiation factor 4F complex" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0048471 GO:GO:0019048 GO:GO:0000166
GO:GO:0006446 GO:GO:0016281 Gene3D:3.30.70.330 GO:GO:0003743
EMBL:CH471200 Orphanet:904 eggNOG:COG0724 Reactome:REACT_1762
CTD:7458 HOVERGEN:HBG018193 EMBL:AF045555 EMBL:D26068 EMBL:AK290676
EMBL:BC010021 EMBL:BC021214 EMBL:BC066928 IPI:IPI00014263
IPI:IPI00375127 RefSeq:NP_071496.1 RefSeq:NP_114381.1
UniGene:Hs.520943 ProteinModelPortal:Q15056 SMR:Q15056
IntAct:Q15056 STRING:Q15056 PhosphoSite:Q15056 DMDM:18276665
PaxDb:Q15056 PRIDE:Q15056 DNASU:7458 Ensembl:ENST00000265753
Ensembl:ENST00000353999 Ensembl:ENST00000575843
Ensembl:ENST00000575925 GeneID:7458 KEGG:hsa:7458 UCSC:uc003uad.1
UCSC:uc003uae.1 GeneCards:GC07P073588 HGNC:HGNC:12741 HPA:HPA030542
MIM:603431 neXtProt:NX_Q15056 PharmGKB:PA162384997
HOGENOM:HOG000013063 InParanoid:Q15056 OMA:PRTVSEP
OrthoDB:EOG46DM3S PhylomeDB:Q15056 ChEMBL:CHEMBL1293274
ChiTaRS:EIF4H GenomeRNAi:7458 NextBio:29206 ArrayExpress:Q15056
Bgee:Q15056 CleanEx:HS_EIF4H Genevestigator:Q15056 Uniprot:Q15056
Length = 248
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 91 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
Score = 137 (53.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 69 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>UNIPROTKB|I3L594 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 CTD:7458 EMBL:FP340223
RefSeq:NP_001230377.1 UniGene:Ssc.54702 Ensembl:ENSSSCT00000029656
GeneID:100627717 KEGG:ssc:100627717 Uniprot:I3L594
Length = 228
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 91 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
Score = 137 (53.3 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 69 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>UNIPROTKB|I3LRD5 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048589 "developmental growth" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
CTD:7458 OMA:PRTVSEP EMBL:FP340223 UniGene:Ssc.54702
GeneID:100627717 KEGG:ssc:100627717 RefSeq:NP_001230376.1
Ensembl:ENSSSCT00000024462 Uniprot:I3LRD5
Length = 248
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 91 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
Score = 137 (53.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 69 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>MGI|MGI:1341822 [details] [associations]
symbol:Eif4h "eukaryotic translation initiation factor 4H"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0019953 "sexual
reproduction" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1341822 GO:GO:0048471
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048589 GO:GO:0003743
GO:GO:0019953 eggNOG:COG0724 EMBL:AF289664
GeneTree:ENSGT00530000063406 CTD:7458 HOVERGEN:HBG018193
HOGENOM:HOG000013063 OMA:PRTVSEP OrthoDB:EOG46DM3S ChiTaRS:EIF4H
EMBL:AF139987 EMBL:BC014796 IPI:IPI00124742 IPI:IPI00222560
RefSeq:NP_291039.1 UniGene:Mm.27955 PDB:2DNG PDBsum:2DNG
ProteinModelPortal:Q9WUK2 SMR:Q9WUK2 STRING:Q9WUK2
PhosphoSite:Q9WUK2 PaxDb:Q9WUK2 PRIDE:Q9WUK2
Ensembl:ENSMUST00000036125 GeneID:22384 KEGG:mmu:22384
InParanoid:Q9WUK2 EvolutionaryTrace:Q9WUK2 NextBio:302749
PMAP-CutDB:Q9WUK2 Bgee:Q9WUK2 CleanEx:MM_EIF4H
Genevestigator:Q9WUK2 GermOnline:ENSMUSG00000040731 Uniprot:Q9WUK2
Length = 248
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 91 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
Score = 137 (53.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 69 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>RGD|1359222 [details] [associations]
symbol:Eif4h "eukaryotic translation initiation factor 4H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA;ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359222 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 eggNOG:COG0724 GeneTree:ENSGT00530000063406 CTD:7458
HOVERGEN:HBG018193 HOGENOM:HOG000013063 OMA:PRTVSEP
OrthoDB:EOG46DM3S EMBL:BC083818 IPI:IPI00370315
RefSeq:NP_001006958.1 UniGene:Rn.79423 HSSP:P23588
ProteinModelPortal:Q5XI72 SMR:Q5XI72 STRING:Q5XI72
PhosphoSite:Q5XI72 PRIDE:Q5XI72 Ensembl:ENSRNOT00000050059
GeneID:288599 KEGG:rno:288599 UCSC:RGD:1359222 InParanoid:Q5XI72
NextBio:628401 ArrayExpress:Q5XI72 Genevestigator:Q5XI72
Uniprot:Q5XI72
Length = 248
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 91 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
Score = 137 (53.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 69 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>UNIPROTKB|Q5XI72 [details] [associations]
symbol:Eif4h "Eukaryotic translation initiation factor 4H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
[GO:0048589 "developmental growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359222 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 eggNOG:COG0724 GeneTree:ENSGT00530000063406 CTD:7458
HOVERGEN:HBG018193 HOGENOM:HOG000013063 OMA:PRTVSEP
OrthoDB:EOG46DM3S EMBL:BC083818 IPI:IPI00370315
RefSeq:NP_001006958.1 UniGene:Rn.79423 HSSP:P23588
ProteinModelPortal:Q5XI72 SMR:Q5XI72 STRING:Q5XI72
PhosphoSite:Q5XI72 PRIDE:Q5XI72 Ensembl:ENSRNOT00000050059
GeneID:288599 KEGG:rno:288599 UCSC:RGD:1359222 InParanoid:Q5XI72
NextBio:628401 ArrayExpress:Q5XI72 Genevestigator:Q5XI72
Uniprot:Q5XI72
Length = 248
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/98 (57%), Positives = 76/98 (77%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
+V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 91 EVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
Score = 137 (53.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DK+TD+FKGFCYVEF +V++L++AL DG + D
Sbjct: 69 SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 108
>ZFIN|ZDB-GENE-010328-19 [details] [associations]
symbol:eif4h "eukaryotic translation initiation
factor 4h" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-010328-19 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG018193
HOGENOM:HOG000013063 OrthoDB:EOG46DM3S eggNOG:NOG240551
EMBL:BC065640 IPI:IPI00481882 UniGene:Dr.76638
ProteinModelPortal:Q6P0F5 SMR:Q6P0F5 STRING:Q6P0F5 PRIDE:Q6P0F5
InParanoid:Q6P0F5 NextBio:20816803 ArrayExpress:Q6P0F5 Bgee:Q6P0F5
Uniprot:Q6P0F5
Length = 263
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 56/97 (57%), Positives = 73/97 (75%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DKETD+FKGFCYVEF
Sbjct: 33 RKQKELPTEPPYTAYVGNLPFNTVQGDIDAIFRDLSVRSVRLVRDKETDKFKGFCYVEFD 92
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGG 99
D+E+L++AL DG + D +R+DIA+G+R + GG
Sbjct: 93 DLESLKEALTYDGALLGDR-SLRVDIAEGRRQERGGG 128
Score = 144 (55.7 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
SVRLV+DKETD+FKGFCYVEF D+E+L++AL DG + D
Sbjct: 71 SVRLVRDKETDKFKGFCYVEFDDLESLKEALTYDGALLGD 110
>FB|FBgn0039797 [details] [associations]
symbol:CG1340 species:7227 "Drosophila melanogaster"
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0005829 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0003743 GeneTree:ENSGT00530000063406
HSSP:P33240 FlyBase:FBgn0039797 EMBL:BT003308 RefSeq:NP_651820.1
UniGene:Dm.11867 SMR:Q9VA45 MINT:MINT-1742166 STRING:Q9VA45
EnsemblMetazoa:FBtr0085699 GeneID:43645 KEGG:dme:Dmel_CG1340
UCSC:CG1340-RA InParanoid:Q9VA45 OMA:EFKGYGY GenomeRNAi:43645
NextBio:835038 Uniprot:Q9VA45
Length = 459
Score = 243 (90.6 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 48/96 (50%), Positives = 68/96 (70%)
Query: 5 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDV 64
Q+ +PTEPP+ A+VGNLP G+ QGDV + F + ++ +VRL+KD+ETD FKG+ YVEF +
Sbjct: 54 QRQVPTEPPFIAYVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETDEFKGYGYVEFETL 113
Query: 65 ENLRQALLKDGRITVDGLQ--VRLDIADGKRNDNKG 98
L+ AL +GRI +D +R+DIAD +R N G
Sbjct: 114 AQLKSALNCNGRIKLDNFSAPLRIDIADHRRQ-NPG 148
Score = 112 (44.5 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 225
+VRL+KD+ETD FKG+ YVEF + L+ AL +GRI +D
Sbjct: 90 NVRLIKDRETDEFKGYGYVEFETLAQLKSALNCNGRIKLD 129
Score = 39 (18.8 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 116 NKYNQHQGGSFNRDNMRNN 134
N+ +Q FNRDN NN
Sbjct: 3 NRSSQRDR-EFNRDNTYNN 20
Score = 37 (18.1 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 12/58 (20%), Positives = 18/58 (31%)
Query: 92 KRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFN-RDNMRNNXXXXXXXXXXXFND 148
+R N++ + YN+ G FN R + N FND
Sbjct: 203 RREPRSNSSNHQMSNSSPTQSTTSINYNRTTRGGFNSRVAVGGNGNRYQGGAPRNFND 260
Score = 36 (17.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 116 NKYNQHQGGSFNRDNMRNN 134
N+ N + NRD+ R+N
Sbjct: 13 NRDNTYNNNRDNRDHNRDN 31
Score = 35 (17.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 90 DGKRN-DNKGGFNNKQNR 106
D + N +N+ F N +NR
Sbjct: 30 DNRDNRENRSNFQNYRNR 47
>ASPGD|ASPL0000069068 [details] [associations]
symbol:AN7350 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001304 GO:GO:0003743 ProteinModelPortal:C8VCK1
EnsemblFungi:CADANIAT00000083 HOGENOM:HOG000167806 OMA:EPPMERP
Uniprot:C8VCK1
Length = 497
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 43/96 (44%), Positives = 57/96 (59%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R LPTEPPYTA +GNL T GD+ F + + +VR+V+DK T KGF YVEF
Sbjct: 71 REPLPLPTEPPYTAHIGNLSFDATSGDISDLFADCGVTNVRIVEDKLTKAPKGFGYVEFE 130
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADG-KRNDNK 97
V+ L++AL G T+ G +R+ IA+ K D K
Sbjct: 131 TVDGLKKALDLSGA-TLQGRSIRVSIAEPPKERDVK 165
>ZFIN|ZDB-GENE-060629-1 [details] [associations]
symbol:eif4ba "eukaryotic translation initiation
factor 4Ba" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060629-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
EMBL:BX511107 IPI:IPI00861203 Ensembl:ENSDART00000087899
Bgee:F1QNK2 Uniprot:F1QNK2
Length = 615
Score = 179 (68.1 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 41/107 (38%), Positives = 62/107 (57%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 85 DRSRLPRSPPYTAFLGNLPYDVTEDSIKNFFRGLSISAVRLPREPSNPERLKGFGYAEFD 144
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADG---KRNDNKGGFNNKQNR 106
DVE+L QAL + + ++R+DIAD K D++ +NR
Sbjct: 145 DVESLLQALSLNEE-NLGNRRIRVDIADQSNEKERDDRSVSGRDRNR 190
>UNIPROTKB|F8VSC7 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01020867
ProteinModelPortal:F8VSC7 SMR:F8VSC7 Ensembl:ENST00000550704
ArrayExpress:F8VSC7 Bgee:F8VSC7 Uniprot:F8VSC7
Length = 227
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|F8W0K0 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021052
ProteinModelPortal:F8W0K0 SMR:F8W0K0 Ensembl:ENST00000551002
ArrayExpress:F8W0K0 Bgee:F8W0K0 Uniprot:F8W0K0
Length = 170
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 40 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 99
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 100 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 144
>UNIPROTKB|F8VP89 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021042
ProteinModelPortal:F8VP89 SMR:F8VP89 Ensembl:ENST00000552490
ArrayExpress:F8VP89 Bgee:F8VP89 Uniprot:F8VP89
Length = 275
Score = 169 (64.5 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>ZFIN|ZDB-GENE-030131-8563 [details] [associations]
symbol:eif4bb "eukaryotic translation initiation
factor 4Bb" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-8563 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
EMBL:CR936541 IPI:IPI00488890 Ensembl:ENSDART00000128308
Uniprot:F1Q8G3
Length = 632
Score = 164 (62.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +++ + FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPRSPPYTAFLGNLPYDVSEESIRDFFRGLAISAVRLPREPNNPERLKGFGYAEFD 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNK 97
D+E+L +AL + + ++R+DIAD + ND +
Sbjct: 146 DIESLLRALSLNEE-NLGNRRIRVDIAD-QSNDKE 178
Score = 37 (18.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 91 GKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQGGS-F-NRDNMRN 133
G R+ ++GGF+++ Y + G F +R++ R+
Sbjct: 277 GSRDYDRGGFDSRGGGRRGFSSGFRRDYEDRRDGDRFGDREDRRD 321
>UNIPROTKB|F8VYE9 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021378
ProteinModelPortal:F8VYE9 SMR:F8VYE9 Ensembl:ENST00000550390
ArrayExpress:F8VYE9 Bgee:F8VYE9 Uniprot:F8VYE9
Length = 185
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 34/97 (35%), Positives = 58/97 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGG 99
D+++L AL + ++ ++R+D+AD ++ G
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKGTPG 181
>UNIPROTKB|G4N5M5 [details] [associations]
symbol:MGG_05264 "Translation initiation factor 4B"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CM001233 Gene3D:3.30.70.330 GO:GO:0003743
KO:K03258 RefSeq:XP_003712822.1 EnsemblFungi:MGG_05264T0
GeneID:2675531 KEGG:mgr:MGG_05264 Uniprot:G4N5M5
Length = 563
Score = 173 (66.0 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 39/87 (44%), Positives = 53/87 (60%)
Query: 8 LPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
+P +PPYTA +GNL T V FF ++VSVR+V+D+E R KGF Y EF E L
Sbjct: 76 IPDKPPYTAHLGNLSYDATNETVTDFFAACEVVSVRIVEDREQQRPKGFGYAEFATAEGL 135
Query: 68 RQALLKDGRITVDGLQVRLDIADGKRN 94
++AL DG + G +R+ IAD +N
Sbjct: 136 QKALNFDGD-SFQGRVIRIRIADPPKN 161
>MGI|MGI:95304 [details] [associations]
symbol:Eif4b "eukaryotic translation initiation factor 4B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:95304 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 CTD:1975 eggNOG:NOG238591 HOGENOM:HOG000006553
HOVERGEN:HBG006129 KO:K03258 EMBL:AK045250 EMBL:AK077423
EMBL:AK170354 IPI:IPI00221581 RefSeq:NP_663600.2 UniGene:Mm.290022
UniGene:Mm.391795 ProteinModelPortal:Q8BGD9 SMR:Q8BGD9
MINT:MINT-1954873 STRING:Q8BGD9 PhosphoSite:Q8BGD9 PaxDb:Q8BGD9
PRIDE:Q8BGD9 Ensembl:ENSMUST00000169681 GeneID:75705 KEGG:mmu:75705
UCSC:uc007xuk.2 GeneTree:ENSGT00530000063406 InParanoid:Q8BGD9
OMA:YAEFDDV OrthoDB:EOG4SQWWX ChiTaRS:EIF4B NextBio:343748
Bgee:Q8BGD9 CleanEx:MM_EIF4B Genevestigator:Q8BGD9
GermOnline:ENSMUSG00000058655 Uniprot:Q8BGD9
Length = 611
Score = 172 (65.6 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 37/106 (34%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ DR KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>RGD|1306479 [details] [associations]
symbol:Eif4b "eukaryotic translation initiation factor 4B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306479 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 EMBL:CH474035 CTD:1975
eggNOG:NOG238591 HOGENOM:HOG000006553 HOVERGEN:HBG006129 KO:K03258
GeneTree:ENSGT00530000063406 OrthoDB:EOG4SQWWX EMBL:BC085933
IPI:IPI00373045 RefSeq:NP_001008325.1 UniGene:Rn.95954 SMR:Q5RKG9
STRING:Q5RKG9 Ensembl:ENSRNOT00000014033 GeneID:300253
KEGG:rno:300253 UCSC:RGD:1306479 InParanoid:Q5RKG9 NextBio:646645
Genevestigator:Q5RKG9 Uniprot:Q5RKG9
Length = 611
Score = 172 (65.6 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 37/106 (34%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ DR KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>POMBASE|SPBC18H10.04c [details] [associations]
symbol:sce3 "translation initiation factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003723
"RNA binding" evidence=ISM] [GO:0003743 "translation initiation
factor activity" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005840 "ribosome" evidence=ISO] [GO:0006413 "translational
initiation" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC18H10.04c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0005840 GO:GO:0003743
eggNOG:COG0724 GO:GO:0002183 KO:K03258 EMBL:AJ000318 PIR:T45516
RefSeq:NP_595728.1 ProteinModelPortal:O14369 STRING:O14369
PRIDE:O14369 EnsemblFungi:SPBC18H10.04c.1 GeneID:2540528
KEGG:spo:SPBC18H10.04c OMA:ENHRDFS OrthoDB:EOG40KC7K
NextBio:20801655 Uniprot:O14369
Length = 388
Score = 168 (64.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 1 YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVE 60
Y R+ +P+EPP+TA VGNL +T+ D+ FF E + S+RLV D T+R +GF YVE
Sbjct: 81 YQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGEG-VTSIRLVIDPLTERSRGFGYVE 139
Query: 61 FVDVENLRQALLKDGRITVDGLQVRLDIADGKRN 94
F + L AL G + G VR+ +A+ +R+
Sbjct: 140 FETADTLSAALALSGEDLM-GRPVRITVAEPRRS 172
>UNIPROTKB|F1MYS7 [details] [associations]
symbol:EIF4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:YAEFDDV EMBL:DAAA02012872
EMBL:DAAA02012873 IPI:IPI00700182 UniGene:Bt.77209
Ensembl:ENSBTAT00000009044 Uniprot:F1MYS7
Length = 610
Score = 170 (64.9 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|E2RKS4 [details] [associations]
symbol:EIF4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:YAEFDDV EMBL:AAEX03015001
EMBL:AAEX03015000 ProteinModelPortal:E2RKS4
Ensembl:ENSCAFT00000011414 Uniprot:E2RKS4
Length = 612
Score = 170 (64.9 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|P23588 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_111102 GO:GO:0008286
GO:GO:0000166 GO:GO:0006446 GO:GO:0016281 Gene3D:3.30.70.330
EMBL:CH471054 GO:GO:0003743 GO:GO:0000289 Reactome:REACT_1762
EMBL:X55733 EMBL:AB076839 EMBL:CR456958 EMBL:AK222528 EMBL:BC073139
EMBL:BC073154 EMBL:BC098437 IPI:IPI00012079 PIR:S12566
RefSeq:NP_001408.2 UniGene:Hs.648394 UniGene:Hs.702041 PDB:1WI8
PDB:2J76 PDBsum:1WI8 PDBsum:2J76 ProteinModelPortal:P23588
SMR:P23588 IntAct:P23588 MINT:MINT-210187 STRING:P23588
PhosphoSite:P23588 DMDM:205371761 PaxDb:P23588 PRIDE:P23588
Ensembl:ENST00000262056 GeneID:1975 KEGG:hsa:1975 UCSC:uc001sbh.4
CTD:1975 GeneCards:GC12P053400 HGNC:HGNC:3285 HPA:CAB019440
MIM:603928 neXtProt:NX_P23588 PharmGKB:PA27713 eggNOG:NOG238591
HOGENOM:HOG000006553 HOVERGEN:HBG006129 InParanoid:P23588 KO:K03258
PhylomeDB:P23588 EvolutionaryTrace:P23588 GenomeRNAi:1975
NextBio:7995 PMAP-CutDB:P23588 ArrayExpress:P23588 Bgee:P23588
CleanEx:HS_EIF4B Genevestigator:P23588 GermOnline:ENSG00000063046
Uniprot:P23588
Length = 611
Score = 169 (64.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|E7EX17 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 OMA:YAEFDDV EMBL:AC068888 IPI:IPI01022506
ProteinModelPortal:E7EX17 SMR:E7EX17 PRIDE:E7EX17
Ensembl:ENST00000420463 UCSC:uc010snu.2 ArrayExpress:E7EX17
Bgee:E7EX17 Uniprot:E7EX17
Length = 616
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 106
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|F8VX11 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021182
ProteinModelPortal:F8VX11 SMR:F8VX11 Ensembl:ENST00000549481
ArrayExpress:F8VX11 Bgee:F8VX11 Uniprot:F8VX11
Length = 360
Score = 163 (62.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQALLKDGRITVDGLQVRLDIAD 90
D+++L AL + ++ ++R+D+AD
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVAD 172
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 15 TAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T FVGNLP + V F P+ ++ +RL D E+ R KGF YV++ V+ R+A +
Sbjct: 385 TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNE 444
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGG 99
+DG +RLD + + N+ GG
Sbjct: 445 LQGAEIDGRPIRLDFSTPRANNGGGG 470
Score = 132 (51.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 76
FVGNL +T+ + + F + +S R++ +++T R +GF YVEF + + +A
Sbjct: 280 FVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMKE 339
Query: 77 ITVDGLQVRLDIADGK-RNDNKGGFNNK-QNR 106
+DG ++ LD A G+ N ++GGF + QNR
Sbjct: 340 HEIDGRKINLDYATGRPANKDQGGFKERAQNR 371
Score = 67 (28.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
++ +RL D E+ R KGF YV++ V+ R+A + +DG
Sbjct: 410 VLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDG 452
>UNIPROTKB|F8VRU1 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021513
ProteinModelPortal:F8VRU1 SMR:F8VRU1 Ensembl:ENST00000549077
ArrayExpress:F8VRU1 Bgee:F8VRU1 Uniprot:F8VRU1
Length = 175
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 62
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 63 DVENLRQAL 71
D+++L AL
Sbjct: 146 DLDSLLSAL 154
>DICTYBASE|DDB_G0284167 [details] [associations]
symbol:DDB_G0284167 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
Uniprot:Q54Q30
Length = 293
Score = 124 (48.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 7 TLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVE 65
T PT P + FVGNL + +E F E K++SVR++K K GF V+ D+E
Sbjct: 10 TTPTTPAHRIFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKFKSNTFGF--VDMEDLE 67
Query: 66 NLRQALLK-DGRITVDGLQVRLDIADGKRNDNK 97
+A+ +GR DG QV ++IA K ++K
Sbjct: 68 TANKAVAAINGR-EFDGKQVNVEIAREKSTESK 99
Score = 69 (29.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S ++ +K T+R KGF +VEF DV N ++ L
Sbjct: 227 SAHVIVNKHTNRSKGFGFVEFDDVANQQKGL 257
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 148 (57.2 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 33/90 (36%), Positives = 56/90 (62%)
Query: 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
EP + +VGNLP + G +E+ F E K+V R+V D+ET R +GF +V DV+ L +
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 70 ALLK-DGRITVDGLQVRLDIADGKRNDNKG 98
A+ DG+ ++G +R+++A+ +R +G
Sbjct: 301 AISALDGQ-NLEGRAIRVNVAE-ERPPRRG 328
Score = 76 (31.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 11 EPPYTA--FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVENL 67
EP A FVGNL + + F + V + ++ ++ETD+ +GF +V V+
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 68 RQALLKDGRITVDG 81
A+ K R ++G
Sbjct: 205 ETAVEKFNRYDLNG 218
Score = 74 (31.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 177 MVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-DGR 221
+ +E +V R+V D+ET R +GF +V DV+ L +A+ DG+
Sbjct: 263 LFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQ 308
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 134 (52.2 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F GNL I + D+E FF E ++V VRL + FKG+ ++EF E ++AL
Sbjct: 385 TLFAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 74 DGRITVDGLQVRLDIADGK---RNDNKG 98
+G++ + G VRLD+A+ + RN N G
Sbjct: 444 NGKLLL-GRDVRLDLANERGTPRNSNPG 470
Score = 42 (19.8 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 187 VRLVKDKETDRFKGFCYVE 205
V + D+ET +GF Y++
Sbjct: 512 VHVPTDRETGASRGFAYID 530
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 126 (49.4 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 15 TAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T FVGNLP + V FF E ++ S+RL ++E+ R KGF YV F VE+ + A +
Sbjct: 343 TLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQ 402
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNK 103
+++G RLD + + GGF +
Sbjct: 403 LNGQSINGRNCRLDYSTPRPPREDGGFGGR 432
Score = 121 (47.7 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFCYVEF 61
+ KT ++ P T FVGNL + + E F + S R++ D+E+ R KGF YV+F
Sbjct: 228 KKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDF 287
Query: 62 VDVENLRQALLKDGRITVDGLQVRLDIADGKR-NDN 96
E +A + +DG ++++D + GK N N
Sbjct: 288 ATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSN 323
Score = 75 (31.5 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 175 GLMVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 215
G +EV + S+RL ++E+ R KGF YV F VE+ + A
Sbjct: 359 GAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSA 399
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L T+ +E+ F + ++ V +VKD+E+ R +GF +V F + E+ + A++
Sbjct: 9 FVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGGF 100
+VDG Q+R+D A ND +GG+
Sbjct: 69 GKSVDGRQIRVDQAGKSSNDRRGGY 93
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 131 (51.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F + ++ V +VKD+ET R +GF +V F + E+ + A+
Sbjct: 9 FVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGGF 100
TVDG Q+R+D A ND +GG+
Sbjct: 69 GKTVDGRQIRVDQAGKSSNDRRGGY 93
>FB|FBgn0020660 [details] [associations]
symbol:eIF-4B "Eukaryotic initiation factor 4B" species:7227
"Drosophila melanogaster" [GO:0005829 "cytosol"
evidence=ISS;IDA;IPI] [GO:0003743 "translation initiation factor
activity" evidence=ISS;IPI] [GO:0006413 "translational initiation"
evidence=ISS;IPI] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0046427 "positive regulation of
JAK-STAT cascade" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0000166 GO:GO:0008283 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046427 GO:GO:0003743 EMBL:CM000457
KO:K03258 GeneTree:ENSGT00530000063406 UniGene:Dm.5911
GeneID:3355041 KEGG:dme:Dmel_CG10837 CTD:3355041
FlyBase:FBgn0020660 ChiTaRS:eIF-4B GenomeRNAi:3355041
NextBio:850265 EMBL:BT015266 EMBL:BN000680 RefSeq:NP_001015319.1
SMR:Q7PLL3 IntAct:Q7PLL3 STRING:Q7PLL3 EnsemblMetazoa:FBtr0113680
UCSC:CG10837-RB InParanoid:Q7PLL3 OMA:PRANRIF Uniprot:Q7PLL3
Length = 459
Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 38/132 (28%), Positives = 67/132 (50%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVK-DKETDRFKGFCYVEFV 62
+ ++P + P+ A++ NLP + D+ FF L+S+RL + D E R +GF YVE
Sbjct: 70 DDNSIPHKAPFIAYINNLPFDANEDDLYEFFEGINLISLRLPREDGENGRSRGFGYVELE 129
Query: 63 DVENLRQAL-LKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXNKYNQH 121
+ E+L L L D ++ G ++R+++++ ND + K NR N +
Sbjct: 130 NREDLIHVLSLPDP--SIKGRRIRIELSN--ENDQQS--RQKSNRRFDGFG---NNGDNR 180
Query: 122 QGGSFNRDNMRN 133
G++ RD+ N
Sbjct: 181 DSGNWRRDSQNN 192
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 17 FVGNLPNGITQGD-VERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
F+G L N T D +E+ F + +S V +VKD+ET R +GF +V F +V++ + A++
Sbjct: 8 FIGGL-NFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 75 GRITVDGLQVRLDIADGKRNDNKGGF 100
+VDG Q+R+D A + +GG+
Sbjct: 67 NGKSVDGRQIRVDQAGKSSGERRGGY 92
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G L + +E+ F + +S V +VKD+ET R +GF +V F + ++ + A++
Sbjct: 8 FIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMN 67
Query: 76 RITVDGLQVRLDIADGKRNDNKGGF 100
VDG Q+R+D A D +GG+
Sbjct: 68 GKAVDGRQIRVDQAGKSSGDRRGGY 92
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 131 (51.2 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 131 (51.2 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 31/101 (30%), Positives = 52/101 (51%)
Query: 1 YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYV 59
+ RN + + F+G L T+ +E F + ++ V +++D+ETDR +GF +V
Sbjct: 10 FNRNSEVIIMSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFV 69
Query: 60 EFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 100
F + E+ + A+ VDG +R+D A GK GGF
Sbjct: 70 TFENPEDAKDAMAAMNGKQVDGRMIRVDEA-GKSGGRSGGF 109
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 128 (50.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F NL I + DVE FF E ++V VR +++ F+GF +VEF E ++AL
Sbjct: 298 TLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEF 357
Query: 74 DGRITVDGLQVRLDIAD--GKRND 95
GR + G ++RLDIA G+R +
Sbjct: 358 HGRPLL-GREIRLDIAQERGERGE 380
Score = 44 (20.5 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220
VSV + D++T KG Y+EF E +AL +G
Sbjct: 434 VSVPI--DRDTGNSKGIAYLEFS--EGKEKALELNG 465
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 110 (43.8 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
+VGNLP IT ++ + F E +V V++V DK TDR +GF +V +E ++A+
Sbjct: 119 YVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFN 178
Query: 76 RITVDGLQVRLDIADGKR 93
+ G V+++ + R
Sbjct: 179 SSQIGGRTVKVNFPEVPR 196
Score = 107 (42.7 bits), Expect = 0.00069, P = 0.00069
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 11 EPPYTAFVGNLPNGIT-QGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
+ P+ + GNL +T QG + F + ++ +++ ++ T R +GF ++ F EN++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 70 ALLKDGRITVDGLQVRLDIA 89
AL + V+G +RL++A
Sbjct: 276 ALATMNGVEVEGRALRLNLA 295
Score = 66 (28.3 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
++ +++ ++ T R +GF ++ F EN++ AL + V+G
Sbjct: 245 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEG 287
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 14 YTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
++ +VGN P T+ D+ +F + VS VR+V D+ET R +GF +VEF + ++A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 73 KDGRITVDGLQVRLDIADGKRN 94
+ + +G +R+++A + N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 14 YTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
++ +VGN P T+ D+ +F + VS VR+V D+ET R +GF +VEF + ++A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 73 KDGRITVDGLQVRLDIADGKRN 94
+ + +G +R+++A + N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 121 (47.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 18 VGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 76
VG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 77 ITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK ++N+
Sbjct: 70 KSVDGRQIRVDQA-GKSSENR 89
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 131 (51.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 103 (41.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGG 99
++DG Q+R+D A +GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGG 92
Score = 51 (23.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 91 GKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNRDNMRN 133
G+ + GG+ R Y+++ GG++ RDN N
Sbjct: 115 GRYDSRPGGYGYGYGRSRDYSGRSQGGYDRYSGGNY-RDNYDN 156
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 131 (51.2 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 36/93 (38%), Positives = 52/93 (55%)
Query: 9 PTEPPYTAFVGNLP-NGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
P+EP T F+GNL N E F ++VSVR+ ET++ KGF YV+F ++E+
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 68 RQAL-LKDGRITVDGLQVRLDIADGKRNDNKGG 99
++AL G +D VRLD + + N N GG
Sbjct: 322 KKALDALQGEY-IDNRPVRLDFSSPRPN-NDGG 352
Score = 101 (40.6 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEF 61
+ QK TE P T FVG L I +++ F ++ R++ ++ TDR +G+ YV+F
Sbjct: 157 KKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDF 216
Query: 62 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDN 96
+ +A+ + +DG + D++ K N
Sbjct: 217 ENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGN 251
Score = 73 (30.8 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 184 LVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
+VSVR+ ET++ KGF YV+F ++E+ ++AL
Sbjct: 293 VVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 121 (47.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 18 VGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 76
VG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 77 ITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK ++N+
Sbjct: 70 KSVDGRQIRVDQA-GKSSENR 89
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
+VG+L +T +++ FF + ++ +L+ D+ET R KGF ++ + + ++A+ K
Sbjct: 21 YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKAN 80
Query: 76 RITVDGLQVRLDIA-----DGKRNDNKGGFNNKQNR 106
I + G ++R++IA D +R+ GG + R
Sbjct: 81 GIDLQGRKIRVNIARENTGDRRRDGGSGGRGGRGGR 116
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
+VG+L +T +++ FF + ++ +L+ D+ET R KGF ++ + + ++A+ K
Sbjct: 21 YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKAN 80
Query: 76 RITVDGLQVRLDIA-----DGKRNDNKGGFNNKQNR 106
I + G ++R++IA D +R+ GG + R
Sbjct: 81 GIDLQGRKIRVNIARENTGDRRRDGGSGGRGGRGGR 116
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 108 (43.1 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 9 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
P T F +P T+ DV FF + K+ VRL+ D+ + R KG Y+EF DV ++
Sbjct: 163 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 222
Query: 68 RQALLKDGRITVDGLQVRLDIADGKRN 94
A+ G++ + G V + ++ ++N
Sbjct: 223 PMAIALSGQLFL-GQPVMVKPSEAEKN 248
Score = 67 (28.6 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 187 VRLVKDKETDRFKGFCYVEFVDVENLRQALLK-DGRITVDG 226
V+L D ET + KGF +++FV +E+ + A + +G++ + G
Sbjct: 294 VQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAG 334
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLD 87
+VDG Q+R+D
Sbjct: 69 GKSVDGRQIRVD 80
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 36/131 (27%), Positives = 55/131 (41%)
Query: 1 YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYV 59
YG +Q P P T F+GNL + ++ F E ++S R+ +T + KGF YV
Sbjct: 261 YGDSQS--P--PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYV 316
Query: 60 EFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXNKYN 119
+F V+ + AL ++G RLD + + N N NN++
Sbjct: 317 QFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNNRRGGFGGGFGGRERSAT 376
Query: 120 QHQGGSFNRDN 130
G S R N
Sbjct: 377 PRSGNSTPRPN 387
Score = 111 (44.1 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 31/132 (23%), Positives = 60/132 (45%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEF 61
+++ TE P T FVG L I ++R F ++ R++ ++ T + +G+ YV+F
Sbjct: 157 KSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216
Query: 62 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXNKYNQH 121
+AL + +DG + LD++ GK + +K + + + +
Sbjct: 217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGN 276
Query: 122 QGGSFNRDNMRN 133
+ NRDN+ N
Sbjct: 277 LSFNANRDNLFN 288
Score = 59 (25.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 180 EVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
E ++S R+ +T + KGF YV+F V+ + AL
Sbjct: 292 EYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAAL 328
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 36/131 (27%), Positives = 55/131 (41%)
Query: 1 YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYV 59
YG +Q P P T F+GNL + ++ F E ++S R+ +T + KGF YV
Sbjct: 261 YGDSQS--P--PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYV 316
Query: 60 EFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXNKYN 119
+F V+ + AL ++G RLD + + N N NN++
Sbjct: 317 QFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNNRRGGFGGGFGGRERSAT 376
Query: 120 QHQGGSFNRDN 130
G S R N
Sbjct: 377 PRSGNSTPRPN 387
Score = 111 (44.1 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 31/132 (23%), Positives = 60/132 (45%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEF 61
+++ TE P T FVG L I ++R F ++ R++ ++ T + +G+ YV+F
Sbjct: 157 KSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216
Query: 62 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXNKYNQH 121
+AL + +DG + LD++ GK + +K + + + +
Sbjct: 217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGN 276
Query: 122 QGGSFNRDNMRN 133
+ NRDN+ N
Sbjct: 277 LSFNANRDNLFN 288
Score = 59 (25.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 180 EVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
E ++S R+ +T + KGF YV+F V+ + AL
Sbjct: 292 EYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAAL 328
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 127 (49.8 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 33/112 (29%), Positives = 58/112 (51%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFN 127
+VDG Q+R+D A G D G N ++R ++ Q G ++
Sbjct: 69 GKSVDGRQIRVDQAGG--GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYS 118
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 103 (41.3 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMN 68
Query: 76 RITVDGLQVRLDIADGK--RNDNKGGF 100
++DG Q+R+D A GK R GGF
Sbjct: 69 GESLDGRQIRVDHA-GKSARGTRGGGF 94
Score = 47 (21.6 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 91 GKRNDNK-GGFNNKQNRXXXXXXXXXNKYNQHQGGSFNRDNMRN 133
G+ D++ GG+ R Y+++ GG++ RDN N
Sbjct: 115 GRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNY-RDNYDN 157
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 106 (42.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 12 PPYTAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQA 70
P T +VGNLP + +G+V+ F E V SVRLV+D++T R KGF +VE + ++A
Sbjct: 62 PTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEA-GAQKA 120
Query: 71 LLKDGRITVDGLQVR-LDIADGKRNDNK 97
++K + Q R L + + K D++
Sbjct: 121 MVK---LNDFNFQERTLKVREAKTQDSE 145
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 12 PPYTAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQA 70
P T +VGNLP + +G+V+ F E V SVRLV+D++T R KGF +VE + ++A
Sbjct: 62 PTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEA-GAQKA 120
Query: 71 LLKDGRITVDGLQVR-LDIADGKRNDNK 97
++K + Q R L + + K D++
Sbjct: 121 MVK---LNDFNFQERTLKVREAKTQDSE 145
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 118 (46.6 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GDV F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 106 (42.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 106 (42.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 106 (42.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 18 VGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 76
VG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 77 ITVDGLQVRLDIADGKRNDNK 97
+VDG Q+R+D A GK ++N+
Sbjct: 70 KSVDGRQIRVDQA-GKSSENR 89
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 124 (48.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 10 TEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 68
+EP T FVGNL T+ D+ F + S+RL D ++ R KGF YV F D+++ +
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 69 QALLKDGRITVDGLQVRLDIAD----GKRNDNKGGFNNK 103
+ + +G + G RLD + G +GGF +
Sbjct: 422 KCVEMNGHF-IAGRPCRLDFSTPRTGGGSRGGRGGFGGR 459
Score = 99 (39.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T FVG L + + + F E +V R++ D ++ R KG+ YV+F E + A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 74 DGRITVDGLQVRLDIAD 90
+G +DG V LD+++
Sbjct: 324 NGTKEIDGRMVNLDLSN 340
Score = 71 (30.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 220
S+RL D ++ R KGF YV F D+++ ++ + +G
Sbjct: 394 SIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNG 428
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
Y FVG L ++ F + ++ +++ D+ET R +GF +V F E +RQA+
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 73 KDGRITVDGLQVRLDIADGKRNDNKGGF 100
+DG + ++ A +R+D GGF
Sbjct: 66 AMNGQDLDGRNITVNEAQSRRSDGGGGF 93
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 100 (40.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 29 DVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87
D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+ G+ V G+ + +
Sbjct: 11 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ-RVLGVPIIVQ 69
Query: 88 IADGKRNDNKGGFNNKQ 104
+ ++N NN Q
Sbjct: 70 ASQAEKNRAAAMANNLQ 86
Score = 66 (28.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 121 SIQLMMDSETGRSKGYGFITFSDSECAKKAL 151
>POMBASE|SPBC17G9.05 [details] [associations]
symbol:rct1 "RRM-containing cyclophilin regulating
transcription Rct1" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISM] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0006457 "protein folding"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0044732 "mitotic spindle pole body" evidence=IDA] [GO:1901407
"regulation of phosphorylation of RNA polymerase II C-terminal
domain" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC17G9.05 GO:GO:0006457 GO:GO:0008360 GO:GO:0044732
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000790 GO:GO:0006368
GO:GO:1901407 eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891
HOGENOM:HOG000186284 KO:K12735 OMA:DRTQNRS OrthoDB:EOG4WWVT7
PIR:T39728 RefSeq:NP_595894.1 ProteinModelPortal:Q9UUE4
STRING:Q9UUE4 EnsemblFungi:SPBC17G9.05.1 GeneID:2539942
KEGG:spo:SPBC17G9.05 NextBio:20801085 Uniprot:Q9UUE4
Length = 432
Score = 125 (49.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 30/125 (24%), Positives = 63/125 (50%)
Query: 12 PPYTAFVGNLPNGITQG-DVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
P FV L N +TQ D+E F K++S ++++DKET + ++EF + E++ +
Sbjct: 242 PENVLFVCKL-NPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Query: 70 ALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNRD 129
A K + +D ++ +D + + +N+ ++R +Y++ G ++R
Sbjct: 301 AYFKMQNVLIDDSRIHVDFSQSVARYRQY-YNSNRDRKRSSSRSDDREYHRRSDGRYDRS 359
Query: 130 NMRNN 134
N R++
Sbjct: 360 NYRDD 364
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 110 (43.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 33/113 (29%), Positives = 51/113 (45%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMN 68
Query: 76 RITVDGLQVRLDIAD----GKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQGG 124
++DG Q+R+D A G R GG +R +Y+ GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGG 121
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 100 (40.3 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T FV NLP +T+ +++ F + + VRLV +KE KG Y+EF +AL +
Sbjct: 370 TLFVKNLPYRVTEDEMKNVF--ENALEVRLVLNKEGSS-KGMAYIEFKTEAEAEKALEEK 426
Query: 75 GRITVDGLQVRLDIADGK--RNDNKGG 99
VDG + +D K + KGG
Sbjct: 427 QGTEVDGRAMVIDYTGEKSQQESQKGG 453
Score = 97 (39.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T V NL ++ ++ F +K S+++ ++ + R KG+ +VEF E+ ++AL
Sbjct: 460 TLIVNNLSYAASEETLQELF--KKATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSC 516
Query: 75 GRITVDGLQVRLDIADG---KRNDN-KGGFNNK 103
++G +RL+ + K N N +GGFN +
Sbjct: 517 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQ 549
Score = 71 (30.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
+S R+V D++T KGF +V+F E+ + A ++DG I DG
Sbjct: 575 ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEI--DG 616
Score = 53 (23.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
S+++ ++ + R KG+ +VEF E+ ++AL ++G
Sbjct: 484 SIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCNNTEIEG 523
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 100 (40.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T FV NLP +T+ +++ F + + VRLV +KE KG Y+EF +AL +
Sbjct: 372 TLFVKNLPYRVTEDEMKNVF--ENALEVRLVLNKEGSS-KGMAYIEFKTEAEAEKALEEK 428
Query: 75 GRITVDGLQVRLDIADGK--RNDNKGG 99
VDG + +D K + KGG
Sbjct: 429 QGTEVDGRAMVIDYTGEKSQQESQKGG 455
Score = 97 (39.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T V NL ++ ++ F +K S+++ ++ + R KG+ +VEF E+ ++AL
Sbjct: 462 TLIVNNLSYAASEETLQELF--KKATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSC 518
Query: 75 GRITVDGLQVRLDIADG---KRNDN-KGGFNNK 103
++G +RL+ + K N N +GGFN +
Sbjct: 519 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQ 551
Score = 71 (30.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
+S R+V D++T KGF +V+F E+ + A ++DG I DG
Sbjct: 577 ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEI--DG 618
Score = 53 (23.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
S+++ ++ + R KG+ +VEF E+ ++AL ++G
Sbjct: 486 SIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCNNTEIEG 525
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 100 (40.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T FV NLP +T+ +++ F + + VRLV +KE KG Y+EF +AL +
Sbjct: 372 TLFVKNLPYRVTEDEMKNVF--ENALEVRLVLNKEGSS-KGMAYIEFKTEAEAEKALEEK 428
Query: 75 GRITVDGLQVRLDIADGK--RNDNKGG 99
VDG + +D K + KGG
Sbjct: 429 QGTEVDGRAMVIDYTGEKSQQESQKGG 455
Score = 97 (39.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T V NL ++ ++ F +K S+++ ++ + R KG+ +VEF E+ ++AL
Sbjct: 462 TLIVNNLSYAASEETLQELF--KKATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSC 518
Query: 75 GRITVDGLQVRLDIADG---KRNDN-KGGFNNK 103
++G +RL+ + K N N +GGFN +
Sbjct: 519 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQ 551
Score = 71 (30.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
+S R+V D++T KGF +V+F E+ + A ++DG I DG
Sbjct: 577 ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEI--DG 618
Score = 53 (23.7 bits), Expect = 0.00035, Sum P(2) = 0.00034
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 226
S+++ ++ + R KG+ +VEF E+ ++AL ++G
Sbjct: 486 SIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCNNTEIEG 525
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 105 (42.0 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 22/78 (28%), Positives = 48/78 (61%)
Query: 14 YTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
++ +VGN P T+ ++ FF ++ +VR+V D+ET R +GF ++EF + + ++A+
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 73 KDGRITVDGLQVRLDIAD 90
+ +G +R+++A+
Sbjct: 65 QMNGAEFNGRPLRVNLAN 82
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 121 (47.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
+ +VGNLP + G +ER F E K+V R+V D+ET R +GF +V+ + + A+
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 73 K-DGRITVDGLQVRLDIAD 90
DG+ ++G +++++A+
Sbjct: 267 ALDGQ-NLEGRAIKVNVAE 284
Score = 92 (37.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 11 EPPYTA--FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVENL 67
EPP A FVGNLP + + F + V + ++ +++TD+ +GF +V VE
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 68 RQALLKDGRITVDGLQVRLDIA 89
+A+ K V+G ++ ++ A
Sbjct: 168 EKAVEKFNSFEVNGRRLTVNRA 189
Score = 60 (26.2 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 177 MVTEVTTLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-DGR 221
+ +E +V R+V D+ET R +GF +V+ + + A+ DG+
Sbjct: 226 LFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 271
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 121 (47.7 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 27/91 (29%), Positives = 52/91 (57%)
Query: 8 LPTEPPY-TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVE 65
+ ++PP FVGN+P G+++ + F K+++ RLV D+ET + KGF + E+ D +
Sbjct: 1 MSSKPPSRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDND 60
Query: 66 NLRQALLKDGRITVDGLQVRLDIADGKRNDN 96
+ A+ + G ++R+D ++ K + N
Sbjct: 61 SAASAVRNLNDTEIMGRKLRVDFSNEKPSTN 91
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 104 (41.7 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 17 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 74
FV L T + + F P ++ RL++D ET R KGF ++ F ++ R+AL D
Sbjct: 10 FVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLD 69
Query: 75 GRITVDGLQVRLDIADGKRNDNKGGFNNK 103
G+I VDG + +++A G +NK
Sbjct: 70 GKI-VDGRLIFVEVAKNAEEVRAGINSNK 97
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 104 (41.7 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 23/78 (29%), Positives = 47/78 (60%)
Query: 14 YTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
++ +VGN+P T+ ++ +F V+ VR+V D+ET R +GF +VEF + ++A+
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVE 65
Query: 73 KDGRITVDGLQVRLDIAD 90
+ + +G +R++ A+
Sbjct: 66 QLNGVAFNGRNLRVNYAN 83
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/115 (26%), Positives = 51/115 (44%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G L + +E F +S V +VKD+ET R +GFC++ F + E+ A+
Sbjct: 9 FLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKG------GFNNKQNRXXXXXXXXXNKYNQHQGG 124
++DG Q+R+D A +G G +R +Y+ GG
Sbjct: 69 GKSLDGRQIRVDHAGKLARGTRGCAFRAHGRGRSYSRGGGDQGYGSGRYDSQPGG 123
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 103 (41.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 66
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 96 (38.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG Y+EFVD ++ A+
Sbjct: 150 TVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGL 209
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ + G+ + + + ++N NN Q
Sbjct: 210 SGQRLL-GVPIIVQASQAEKNRAAALANNLQ 239
Score = 68 (29.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 274 SIQLMMDSETGRSKGYGFITFSDAECAKKAL 304
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 119 (46.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>ASPGD|ASPL0000074275 [details] [associations]
symbol:AN4665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
ProteinModelPortal:Q5B465 STRING:Q5B465
EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
OMA:VFSQNRY Uniprot:Q5B465
Length = 279
Score = 118 (46.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
++G LP +++GD+ F + + V + LV+DKET + +GF ++++ D + A+ G
Sbjct: 36 YIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNLG 95
Query: 76 RITVDGLQVRLDIADGKRNDNKGGFNN 102
TV G +R+D K+ D NN
Sbjct: 96 GATVLGRVLRVDHTRYKKRDEDEDTNN 122
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKRND-NKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNR 128
AL R + G Q+ + A G R N+ +N ++Y + + S+ R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 129 DNMRN 133
R+
Sbjct: 127 RRSRS 131
>DICTYBASE|DDB_G0280529 [details] [associations]
symbol:cstf2 "cleavage stimulation factor 64 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0280529 GO:GO:0005634 GO:GO:0000166
GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 EMBL:AAFI02000036 eggNOG:COG0724 GO:GO:0006379
KO:K14407 InterPro:IPR025742 Pfam:PF14327 RefSeq:XP_641214.1
ProteinModelPortal:Q54V94 EnsemblProtists:DDB0233706 GeneID:8622595
KEGG:ddi:DDB_G0280529 InParanoid:Q54V94 Uniprot:Q54V94
Length = 541
Score = 107 (42.7 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 15 TAFVGNLPNGITQGD-VERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P + D +E F K+VS RL++DK++ + KG+ + E+ +V+N A+
Sbjct: 4 SVFVGNIPYEANEKDLIEIFSGVGKVVSFRLLEDKDSKKSKGYGFCEYENVDNALSAIRN 63
Query: 74 DGRITVDGLQVRLDIADGKR 93
T +R+ AD ++
Sbjct: 64 YMLFTFGNRVLRVSYADNEK 83
Score = 52 (23.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 94 NDNKGGFNNKQNRXXXXXXXXXNKYNQ-HQGGSFNRDNMRNN 134
N+N N +Q + N N + G + N NM NN
Sbjct: 402 NNNMNNMNQQQRQQQQQQQQGGNNMNMGNMGNNMNNMNMNNN 443
Score = 49 (22.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 91 GKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNRDNMRNN 134
G N N G N N N N + N +NM NN
Sbjct: 422 GGNNMNMGNMGNNMNNMNMNNNMN-NNMNNNMNNMNNMNNMMNN 464
Score = 46 (21.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 94 NDNKGGFNNKQNRXXXXXXXXXNKYNQHQGGS-FNRDNMRNN 134
N N G N N + Q QGG+ N NM NN
Sbjct: 394 NMNMGSMGNN-NMNNMNQQQRQQQQQQQQGGNNMNMGNMGNN 434
Score = 39 (18.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 11/40 (27%), Positives = 11/40 (27%)
Query: 94 NDNKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNRDNMRN 133
N N NN N N N N NM N
Sbjct: 434 NMNNMNMNNNMNNNMNNNMNNMNNMNNMMNNMNNMGNMGN 473
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 93 (37.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEF +++++ A+
Sbjct: 182 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL 241
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ + G+ + + + ++N NN Q
Sbjct: 242 TGQRLL-GVPIIVQASQAEKNRLAAMANNLQ 271
Score = 68 (29.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
++ L+KD ET R KG+ ++ F D E R+AL
Sbjct: 306 NIVLMKDSETGRSKGYGFITFSDSECARRAL 336
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 110 (43.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKRND-NKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNR 128
AL R + G Q+ + A G R N+ +N ++Y + + S+ R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 129 DNMRN 133
R+
Sbjct: 127 RRSRS 131
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 111 (44.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 35/125 (28%), Positives = 56/125 (44%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKRND-NKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNR 128
AL R + G Q+ + A G R N+ +N ++Y + + S++R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYDR 126
Query: 129 DNMRN 133
R+
Sbjct: 127 RRSRS 131
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 93 (37.8 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEF +++++ A+
Sbjct: 158 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL 217
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ + G+ + + + ++N NN Q
Sbjct: 218 TGQRLL-GVPIIVQASQAEKNRLAAMANNLQ 247
Score = 65 (27.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
++ L+KD +T R KG+ ++ F D E R+AL
Sbjct: 282 NIVLMKDSDTGRSKGYGFITFSDSECARRAL 312
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 98 (39.6 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 19 GNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-DGR 76
GN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+ +GR
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 77 ITVDGLQVRLDIADGKRN 94
G +R+D A ++N
Sbjct: 62 -EFSGRALRVDNAASEKN 78
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 116 (45.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 116 (45.9 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 38 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 97
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 98 GIKIKGRTIRVD 109
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 116 (45.9 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 38 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 97
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 98 GIKIKGRTIRVD 109
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 116 (45.9 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 93 (37.8 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEF +++++ A+
Sbjct: 167 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL 226
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ + G+ + + + ++N NN Q
Sbjct: 227 TGQRLL-GVPIIVQASQAEKNRLAAMANNLQ 256
Score = 65 (27.9 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
++ L+KD +T R KG+ ++ F D E R+AL
Sbjct: 291 NIVLMKDSDTGRSKGYGFITFSDSECARRAL 321
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 93 (37.8 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEF +++++ A+
Sbjct: 168 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL 227
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ + G+ + + + ++N NN Q
Sbjct: 228 TGQRLL-GVPIIVQASQAEKNRLAAMANNLQ 257
Score = 65 (27.9 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
++ L+KD +T R KG+ ++ F D E R+AL
Sbjct: 292 NIVLMKDSDTGRSKGYGFITFSDSECARRAL 322
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 116 (45.9 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 110 (43.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKRND-NKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNR 128
AL R + G Q+ + A G R N+ +N ++Y + + S+ R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 129 DNMRN 133
R+
Sbjct: 127 RRSRS 131
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 116 (45.9 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 107 (42.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F D E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGG 99
++DG Q+R+D A +GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGG 92
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 87 (35.7 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 29 DVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87
D+E FF K+ VR++ D+ + R KG YVEF +++++ A+ G+ + G+ + +
Sbjct: 11 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLL-GVPIIVQ 69
Query: 88 IADGKRNDNKGGFNNKQ 104
+ ++N NN Q
Sbjct: 70 ASQAEKNRLAAMANNLQ 86
Score = 65 (27.9 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
++ L+KD +T R KG+ ++ F D E R+AL
Sbjct: 121 NIVLMKDSDTGRSKGYGFITFSDSECARRAL 151
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 101 (40.6 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 18 VGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRI 77
V NL ++ ++ F +K VS+R+ ++ R KG+ +VEF +VE+ ++AL
Sbjct: 472 VNNLAFSASEDSLQSVF--EKAVSIRIPQNN--GRPKGYAFVEFENVEDSKEALENCNNT 527
Query: 78 TVDGLQVRLDIADGKRNDNKGGFNN 102
++G +RL+ + R GG N
Sbjct: 528 DIEGRSIRLEYSQNDRERGGGGRGN 552
Score = 59 (25.8 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
++ R+ D++T KGF +V+F + ++ + A + DG I DG
Sbjct: 581 IAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEI--DG 622
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 92 (37.4 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVD ++ A+
Sbjct: 168 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPLAIGL 227
Query: 74 DGRITVDGLQVRLDIADGKRN 94
G+ V G+ + + + ++N
Sbjct: 228 TGQ-RVLGVPIIVQASQAEKN 247
Score = 67 (28.6 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 187 VRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 293 IQLMMDSETGRSKGYGFISFADAECAKKAL 322
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 96 (38.9 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 10 TEPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 68
T + FVG+L IT D++ F P K+ R+VKD T + KG+ +V F + +
Sbjct: 54 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 113
Query: 69 QALLKDGRITVDGLQVR 85
A++ G + G Q+R
Sbjct: 114 NAIVHMGGQWLGGRQIR 130
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 87 (35.7 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLV-KDKETDRFKGFCYVEFVDVENLRQALLK 73
T NLP +TQ +++ F + V +RLV KD ++ KG Y+EF + + L +
Sbjct: 48 TLLAKNLPYKVTQDELKEVFEDA--VEIRLVSKDGKS---KGIAYIEFKTEADAEKTLEE 102
Query: 74 DGRITVDGLQVRLDIAD--GKRNDNKGGFNN 102
+DG + L G+ D +GG N+
Sbjct: 103 KQGTEIDGRSISLYYTGEKGQNQDFRGGKNS 133
Score = 80 (33.2 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T + NL T+ ++ F +K ++ V + + KG+ ++EF E+ ++AL
Sbjct: 141 TLVLSNLAYSATEETLQEVF--EKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSC 197
Query: 75 GRITVDGLQVRLDIADGKRNDN 96
+ ++G +RL++ + + N
Sbjct: 198 NKREIEGRAIRLELQGPRGSPN 219
Score = 68 (29.0 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
+ R+V D+ET KGF +V+F E+ + A ++DG I DG
Sbjct: 250 IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DG 291
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 99 (39.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 31/96 (32%), Positives = 47/96 (48%)
Query: 6 KTLPTE-PPY-----TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCY 58
+T PTE P T F L + D+E FF K+ VRL+ +T RFKG Y
Sbjct: 223 RTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAY 282
Query: 59 VEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRN 94
+EF D E++ AL G+ + G+ + + ++N
Sbjct: 283 IEFDDPESVALALGLSGQRLL-GVPIMVQHTQAEKN 317
Score = 58 (25.5 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 186 SVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
+++L+ D ET R KG+ ++ + + ++ ++AL
Sbjct: 363 AIQLIMDTETGRSKGYGFITYHNADDAKKAL 393
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 112 (44.5 bits), Expect = 0.00010, P = 0.00010
Identities = 33/97 (34%), Positives = 46/97 (47%)
Query: 10 TEPPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
T PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 5 TRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 68 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
AL R V G Q+ + A G R G +K+
Sbjct: 65 EDALYNLNRKWVCGRQIEIQFAQGDRK-TPGQMKSKE 100
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 17 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + + + +F +V + +V DKET + +GF +VEF D + + + +L+
Sbjct: 125 FVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQ 184
Query: 76 RITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXN----KY-NQHQGGSFNR-- 128
++G V + A K+ND +GG + N Y NQ+ GG++N
Sbjct: 185 H-QLNGKMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGG 243
Query: 129 DNMRNN 134
+N NN
Sbjct: 244 NNWGNN 249
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 76
++GNL T+ D+ + F + + SVRL K+KET FKG+ +V+F D ++ AL D +
Sbjct: 265 YIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQ 324
Query: 77 ITVDGLQVRLDIA--DGKRNDNKGGFNN 102
+ + G V++ A D D+ G N
Sbjct: 325 V-ICGRPVKICCALKDRPATDHTPGETN 351
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 101 (40.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G L T+ +E F + +++ V + +++ET+R +GF +V F + ++ + AL
Sbjct: 8 FIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMN 67
Query: 76 RITVDGLQVRLDIADGKRNDNKGG 99
+VDG +R+D A GK GG
Sbjct: 68 GKSVDGRTIRVDEA-GKGGGGGGG 90
Score = 36 (17.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 118 YNQHQGGSFNRD 129
Y+ GG +NRD
Sbjct: 151 YSSGGGGGYNRD 162
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 104 (41.7 bits), Expect = 0.00013, P = 0.00013
Identities = 32/113 (28%), Positives = 52/113 (46%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGG-FNNK---QNRXXXXXXXXXNKYNQHQGG 124
++DG Q+R+D A +GG F + +R +Y+ GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGGAFGARGRGYSRGGGDQGYGNGRYDSRPGG 121
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 74
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 75 GRITVDGLQVRLDIADG-KRNDNKG 98
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 112 (44.5 bits), Expect = 0.00013, P = 0.00013
Identities = 35/129 (27%), Positives = 57/129 (44%)
Query: 11 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
EPP FVG L IT+ + +F ++ S+ L D +T+ +GFC+V F +E Q
Sbjct: 112 EPPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFA-LEEPVQ 170
Query: 70 ALLKDGRITVDGLQVRLDIADGK----RNDNK--------GGFNNKQNRXXXXXXXXXNK 117
LL++ + + + +A K + N+ GGF + R N
Sbjct: 171 KLLENRYHQIGSGKCEIKVAQPKEVYRQQQNRDRGFGGGRGGFRGRGGRGQGFNQGYNNY 230
Query: 118 YNQHQGGSF 126
Y Q+ GG +
Sbjct: 231 YGQNYGGGY 239
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 10 TEPPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
T PP T+ F+ N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 5 TRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 68 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
AL R V G Q+ + A G R G +K+
Sbjct: 65 EDALYNLNRKWVCGRQIEIQFAQGDRK-TPGQMKSKE 100
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
Identities = 28/97 (28%), Positives = 54/97 (55%)
Query: 2 GRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVE 60
G K + T+ FVG +P+ +T+ +++ FF + +V ++++D ET+R +GF +V
Sbjct: 100 GNQSKDIKTKK---IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVI 156
Query: 61 FVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNK 97
F E + + L K I + QV + A+ K++ N+
Sbjct: 157 FDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNR 193
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 112 (44.5 bits), Expect = 0.00014, P = 0.00014
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL- 72
T +VGNLP I + +VE F + +V + L K R G+ +VEF D + A+
Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 73 KDGRITVDGLQVRLDIADGKR---NDNKGGFN 101
+DG DG ++R+++A G R +D +G FN
Sbjct: 65 RDG-YDFDGHRLRVELAHGGRRSSDDTRGSFN 95
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 104 (41.7 bits), Expect = 0.00017, P = 0.00017
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGG 99
++DG Q+R+D A ++GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGSRGG 92
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 93 (37.8 bits), Expect = 0.00017, P = 0.00017
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 9 PTEPPYTAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
P+ P + +VG+L +T+ + E+F P ++S+R+ +D T R G+ YV F +
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 68 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNN 102
+AL + G VR+ + + K G N
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 110 (43.8 bits), Expect = 0.00018, P = 0.00018
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKRND-NKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNR 128
AL R + G Q+ + A G R N+ +N ++Y + + S+ R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 129 DNMRN 133
R+
Sbjct: 127 RRSRS 131
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 110 (43.8 bits), Expect = 0.00018, P = 0.00018
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKRND-NKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNR 128
AL R + G Q+ + A G R N+ +N ++Y + + S+ R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 129 DNMRN 133
R+
Sbjct: 127 RRSRS 131
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 110 (43.8 bits), Expect = 0.00018, P = 0.00018
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKRND-NKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNR 128
AL R + G Q+ + A G R N+ +N ++Y + + S+ R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 129 DNMRN 133
R+
Sbjct: 127 RRSRS 131
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 90 (36.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLV-KDKETDRFKGFCYVEFVDVENLRQALLK 73
T NLP +TQ +++ F + V +RLV KD ++ KG Y+EF + + L +
Sbjct: 404 TLLAKNLPYKVTQDELKEVFEDA--VEIRLVSKDGKS---KGIAYIEFKTEADAEKTLEE 458
Query: 74 DGRITVDGLQVRLDIAD--GKRNDNKGGFNN 102
+DG + L G+ D++GG N+
Sbjct: 459 KQGTEIDGRSISLYYTGEKGQSQDHRGGKNS 489
Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
+ R+V D+ET KGF +V+F E+ + A ++DG I DG
Sbjct: 606 IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DG 647
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 111 (44.1 bits), Expect = 0.00022, P = 0.00022
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G LP +T+GD+ F + ++V++ LV DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 110 (43.8 bits), Expect = 0.00022, P = 0.00022
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 74
+VGNL G+ +E F EQ K+V R++ D+++ R KGF +V + + ++ A+ D
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266
Query: 75 GRITVDGLQVRLDIADGK 92
G +DG Q+R+ A+ +
Sbjct: 267 GA-DLDGRQIRVSEAEAR 283
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 108 (43.1 bits), Expect = 0.00043, P = 0.00043
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R ++P T FV L T+ ++ F V R+V D+ET KGF +V+F
Sbjct: 186 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFN 243
Query: 63 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 103
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 244 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 281
Score = 80 (33.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 74
T + NL T+ ++ F +K ++ V + + KG+ ++EF E+ ++AL
Sbjct: 112 TLVLSNLSYSATEETLQEVF--EKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSC 168
Query: 75 GRITVDGLQVRLDIADGKRNDN 96
+ ++G +RL++ + + N
Sbjct: 169 NKREIEGRAIRLELQGPRGSPN 190
Score = 69 (29.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
V R+V D+ET KGF +V+F E+ + A ++DG I DG
Sbjct: 221 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DG 262
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 107 (42.7 bits), Expect = 0.00027, P = 0.00027
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T +V NLP +T D+ R F + K+V V ++KDK+T R KG ++ F+D ++ +
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRA 70
Query: 74 DGRITVDGLQVRLDIA 89
+ G ++ IA
Sbjct: 71 INNKQLFGRVIKASIA 86
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
Identities = 35/103 (33%), Positives = 51/103 (49%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 62
R ++P T FV L T+ ++ F + V R+V D+ET KGF +V+F
Sbjct: 418 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFN 475
Query: 63 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 103
E+ + A ++DG I DG +V LD A K KGGF +
Sbjct: 476 SEEDAKTAKEAMEDGEI--DGNKVTLDWAKPK---GKGGFGGR 513
Score = 86 (35.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 30/99 (30%), Positives = 49/99 (49%)
Query: 3 RNQKTLPTEP--PYTAFVGNLPNGITQGDV--ERFFPEQKLVSVRLVKDKETDRFKGFCY 58
+ QK +EP P+ F+GNL + + V F + L +V D T + F Y
Sbjct: 154 KKQKIEGSEPTTPFNLFIGNLNKSVAELKVAISDLFAKNDLAAV----DVRTGTNRKFGY 209
Query: 59 VEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNK 97
V+F E+L +AL G + V G +++L+ G+ D+K
Sbjct: 210 VDFESAEDLEKALELTG-LKVFGNEIKLEKPKGR--DSK 245
Score = 69 (29.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
V R+V D+ET KGF +V+F E+ + A ++DG I DG
Sbjct: 453 VRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEI--DG 494
>CGD|CAL0004924 [details] [associations]
symbol:TIF3 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0002181 "cytoplasmic translation"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004924 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000064 EMBL:AACQ01000065 eggNOG:NOG238591
KO:K03258 RefSeq:XP_716672.1 RefSeq:XP_716731.1
ProteinModelPortal:Q5A4L8 STRING:Q5A4L8 GeneID:3641646
GeneID:3641707 KEGG:cal:CaO19.10927 KEGG:cal:CaO19.3423
Uniprot:Q5A4L8
Length = 455
Score = 112 (44.5 bits), Expect = 0.00028, P = 0.00028
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQK----LVS-VRLVKDKETDRFKGFC 57
R + +P +PPY A V NLP + + +V R F ++ ++S + L KD++T R +GF
Sbjct: 86 RKEFPIPDQPPYRARVSNLPWEVEESNVIRHFEDRMQAKDIISDIVLPKDRDTGRLRGFA 145
Query: 58 YVEFVDVENLRQALLKDGRITVDGLQVRLDIA---DGKRNDNKGGFNNKQNR 106
+V F D L ++L G ++ +++A G+ D + G + R
Sbjct: 146 FVTFNDRALLEESL-NLSMTEFQGRKIYVNVAAPPKGEDGDWRAGRSGSNRR 196
>UNIPROTKB|Q5A4L8 [details] [associations]
symbol:TIF3 "Putative uncharacterized protein TIF3"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004924
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000064
EMBL:AACQ01000065 eggNOG:NOG238591 KO:K03258 RefSeq:XP_716672.1
RefSeq:XP_716731.1 ProteinModelPortal:Q5A4L8 STRING:Q5A4L8
GeneID:3641646 GeneID:3641707 KEGG:cal:CaO19.10927
KEGG:cal:CaO19.3423 Uniprot:Q5A4L8
Length = 455
Score = 112 (44.5 bits), Expect = 0.00028, P = 0.00028
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 3 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQK----LVS-VRLVKDKETDRFKGFC 57
R + +P +PPY A V NLP + + +V R F ++ ++S + L KD++T R +GF
Sbjct: 86 RKEFPIPDQPPYRARVSNLPWEVEESNVIRHFEDRMQAKDIISDIVLPKDRDTGRLRGFA 145
Query: 58 YVEFVDVENLRQALLKDGRITVDGLQVRLDIA---DGKRNDNKGGFNNKQNR 106
+V F D L ++L G ++ +++A G+ D + G + R
Sbjct: 146 FVTFNDRALLEESL-NLSMTEFQGRKIYVNVAAPPKGEDGDWRAGRSGSNRR 196
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 91 (37.1 bits), Expect = 0.00030, P = 0.00030
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 13 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 71
P F+G L + +E F + ++V V L+KD+ET++ +GF +V F + + A
Sbjct: 7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAA 66
Query: 72 LK-DGRITVD 80
+G++TVD
Sbjct: 67 RDMNGKMTVD 76
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 103 (41.3 bits), Expect = 0.00034, P = 0.00034
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 10 TEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 68
+E Y FVG L D++R F + ++ +++ D+E+ R +GF +V F D + +R
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 69 QALLKDGRITVDGLQVRLDIADGKRNDNKGG 99
A+ + +DG + ++ A + + GG
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGSGGGGG 92
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 93 (37.8 bits), Expect = 0.00035, P = 0.00035
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 9 PTEPPYTAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
P+ P + +VG+L +T+ + E+F P ++S+R+ +D T R G+ YV F +
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 68 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNN 102
+AL + G VR+ + + K G N
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
>GENEDB_PFALCIPARUM|PFC0865w [details] [associations]
symbol:PFC0865w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 109 (43.4 bits), Expect = 0.00035, P = 0.00035
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD-------VENLR 68
++GNL N +T+GD+ F + + + V LV+D ET + KG+C++ + D V+N
Sbjct: 39 YIGNLDNRLTEGDIVIVFSQYGEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNFN 98
Query: 69 QALLKDGRITVDG-LQVRLD---IADGKRNDNK 97
L + + VD L RL + D +N+ K
Sbjct: 99 GYKLLERPLVVDHILNYRLPKKYLKDADKNEYK 131
>UNIPROTKB|O97318 [details] [associations]
symbol:PFC0865w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 109 (43.4 bits), Expect = 0.00035, P = 0.00035
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD-------VENLR 68
++GNL N +T+GD+ F + + + V LV+D ET + KG+C++ + D V+N
Sbjct: 39 YIGNLDNRLTEGDIVIVFSQYGEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNFN 98
Query: 69 QALLKDGRITVDG-LQVRLD---IADGKRNDNK 97
L + + VD L RL + D +N+ K
Sbjct: 99 GYKLLERPLVVDHILNYRLPKKYLKDADKNEYK 131
>UNIPROTKB|I3LK87 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
Uniprot:I3LK87
Length = 312
Score = 109 (43.4 bits), Expect = 0.00036, P = 0.00036
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 17 FVGNLPNGITQGDVERFFPE----QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQINRYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 98
Query: 73 KDGRITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 NFNGIKIKGRTIRVD 113
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 106 (42.4 bits), Expect = 0.00036, P = 0.00036
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 66
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D E+
Sbjct: 11 TVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKES 63
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 99 (39.9 bits), Expect = 0.00038, P = 0.00038
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 17 FVGNLPNGIT-QGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G L T QG E F ++V ++V D+ +DR KGF +V F + ++AL++
Sbjct: 37 FIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFN 96
Query: 76 RITVDGLQVRLDIADGKRNDNKGG 99
++G + +D A K++ GG
Sbjct: 97 GQQLNGRTIFVDYAKAKQSLGGGG 120
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 111 (44.1 bits), Expect = 0.00038, P = 0.00038
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVGN+P T+ + E +VS RLV D+ET + KG+ + E+ D E A
Sbjct: 12 FVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQ 71
Query: 76 RITVDGLQVRLDIADGKRNDNK 97
++G Q+R+D A+ + +K
Sbjct: 72 SYEINGRQLRVDFAENDKGTDK 93
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 109 (43.4 bits), Expect = 0.00041, P = 0.00041
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+ +++ + F + ++S+++V D+ET + KG+ ++EF D++ A+
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGG 99
+ G +R+D A G N + G
Sbjct: 79 LNGYELSGRILRVDSAAGGMNMEEFG 104
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 103 (41.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T FV L N +T ++ FF + V ++V+DK + R KG YVEF ++++ A+
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300
Query: 74 DGRITVDGLQVRLDIADGKRN 94
G+ + GL V + + + ++N
Sbjct: 301 SGKRLL-GLPVIVQLTEAEKN 320
Score = 47 (21.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 187 VRLVKDKETDRFKGFCYVEFVDVENLRQALLK 218
V L +D + +R KGF Y+++ + + R AL K
Sbjct: 369 VHLQRDDQ-NRSKGFGYIQYRNPISARNALEK 399
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E LV S RLV D+ET + KG+ + E+ D E A+
Sbjct: 25 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 84
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 85 LNGR-EFSGRALRVDNAASEKN 105
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 110 (43.8 bits), Expect = 0.00046, P = 0.00046
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 21 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 80
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 81 LNGR-EFSGRALRVDNAASEKN 101
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 101 (40.6 bits), Expect = 0.00046, P = 0.00046
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQAL-- 71
T +VGNLP + V F E V SVRL+KDK T + +GF +VE ++L +A+
Sbjct: 72 TLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAISA 130
Query: 72 LKDGRITVDGLQVR 85
L D L+VR
Sbjct: 131 LNDTEFQQRTLKVR 144
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 101 (40.6 bits), Expect = 0.00046, P = 0.00046
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQAL-- 71
T +VGNLP + V F E V SVRL+KDK T + +GF +VE ++L +A+
Sbjct: 72 TLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAISA 130
Query: 72 LKDGRITVDGLQVR 85
L D L+VR
Sbjct: 131 LNDTEFQQRTLKVR 144
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 87 (35.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQKLVSVRLV-KDKETDRFKGFCYVEFVDVENLRQALLK 73
T NLP +TQ +++ F + V +RLV KD ++ KG Y+EF + + L +
Sbjct: 407 TLLAKNLPYKVTQDELKEVFEDA--VEIRLVSKDGKS---KGIAYIEFKTEADAEKTLEE 461
Query: 74 DGRITVDGLQVRLDIAD--GKRNDNKGGFNN 102
+DG + L G+ D +GG N+
Sbjct: 462 KQGTEIDGRSISLYYTGEKGQNQDFRGGKNS 492
Score = 68 (29.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
+ R+V D+ET KGF +V+F E+ + A ++DG I DG
Sbjct: 609 IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DG 650
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 110 (43.8 bits), Expect = 0.00048, P = 0.00048
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
F+G P +T+GD+ F + ++ ++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98
Query: 76 RITVDGLQVRLD 87
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 112 (44.5 bits), Expect = 0.00054, P = 0.00054
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 74
F+G++P T+ DV F E +V V L+KD++T +G C+V++ E +A+
Sbjct: 125 FIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALH 184
Query: 75 GRITVDGLQ--VRLDIADGKRNDNKGGFNNK 103
+ T+ G +++ ADG+R + G +K
Sbjct: 185 NQYTLPGAMGPIQVRYADGER-ERHGAIEHK 214
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 112 (44.5 bits), Expect = 0.00054, P = 0.00054
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 17 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 74
F+G++P T+ DV F E +V V L+KD++T +G C+V++ E +A+
Sbjct: 125 FIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALH 184
Query: 75 GRITVDGLQ--VRLDIADGKRNDNKGGFNNK 103
+ T+ G +++ ADG+R + G +K
Sbjct: 185 NQYTLPGAMGPIQVRYADGER-ERHGAIEHK 214
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 107 (42.7 bits), Expect = 0.00058, P = 0.00058
Identities = 26/87 (29%), Positives = 51/87 (58%)
Query: 10 TEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 68
T+P T F+G LP + + +++++F + ++ +R+VKDK T + KG+ ++ F D + +
Sbjct: 103 TDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSK 162
Query: 69 QALLKDGRITVDGLQV--RLDIADGKR 93
A + G G+Q+ R+ I D +R
Sbjct: 163 MAFKEIG--VHRGIQIKDRICIVDIER 187
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 109 (43.4 bits), Expect = 0.00060, P = 0.00059
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 14 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
Y F+G LP+ +T+ D+ FF K+ V ++ D+E + +GF ++ F + E+ + +
Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEE-ESSVEHVT 154
Query: 73 KDGRITVDGLQVRLDIADGKRNDNKGGFNNKQN 105
+ I ++G QV + A+ + D GG N+ +
Sbjct: 155 NERYINLNGKQVEIKKAEPR--DGSGGQNSNNS 185
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 85 (35.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 3 RNQKTLPTEP--PYTAFVGNL-PN-GITQGDV--ERFFPEQKLVSVRLVKDKETDRFKGF 56
+ QK +EP P+ F+GNL PN + + V F + L +V D T + F
Sbjct: 298 KKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV----DVRTGTNRKF 353
Query: 57 CYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNK 97
YV+F E+L +AL G + V G +++L+ G+ D+K
Sbjct: 354 GYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGR--DSK 391
Score = 69 (29.3 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
V R+V D+ET KGF +V+F E+ + A ++DG I DG
Sbjct: 599 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DG 640
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 85 (35.0 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 3 RNQKTLPTEP--PYTAFVGNL-PN-GITQGDV--ERFFPEQKLVSVRLVKDKETDRFKGF 56
+ QK +EP P+ F+GNL PN + + V F + L +V D T + F
Sbjct: 299 KKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV----DVRTGTNRKF 354
Query: 57 CYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNK 97
YV+F E+L +AL G + V G +++L+ G+ D+K
Sbjct: 355 GYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGR--DSK 392
Score = 69 (29.3 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LLKDGRITVDG 226
V R+V D+ET KGF +V+F E+ + A ++DG I DG
Sbjct: 600 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DG 641
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 109 (43.4 bits), Expect = 0.00063, P = 0.00063
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 110 (43.8 bits), Expect = 0.00066, P = 0.00066
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|E5RHG7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00980706
ProteinModelPortal:E5RHG7 SMR:E5RHG7 Ensembl:ENST00000522720
ArrayExpress:E5RHG7 Bgee:E5RHG7 Uniprot:E5RHG7
Length = 75
Score = 88 (36.0 bits), Expect = 0.00066, P = 0.00066
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 9 PTEPPYTAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 67
P+ P + +VG+L +T+ + E+F P ++S+R+ +D T R G+ YV F +
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 68 RQAL 71
+AL
Sbjct: 66 ERAL 69
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 88 (36.0 bits), Expect = 0.00066, P = 0.00066
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL 72
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 104 (41.7 bits), Expect = 0.00067, P = 0.00067
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++ +
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
Query: 74 DGRITVDGLQVRLDIA 89
+ G ++ IA
Sbjct: 71 INNKQLFGRVIKASIA 86
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 99 (39.9 bits), Expect = 0.00069, P = 0.00069
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ +
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMN 68
Query: 76 RITVDGLQVRLDIADGKRNDNKGG 99
++DG Q+R+D A +GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGG 92
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 109 (43.4 bits), Expect = 0.00071, P = 0.00071
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 110 (43.8 bits), Expect = 0.00075, P = 0.00075
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 110 (43.8 bits), Expect = 0.00075, P = 0.00075
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 99 (39.9 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 27/98 (27%), Positives = 50/98 (51%)
Query: 9 PTEPPYTA---FVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDV 64
P++P Y+ +VG+L +T+ + E+F P ++S+R+ +D+ T R G+ V F +
Sbjct: 3 PSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQL 62
Query: 65 ENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNN 102
E+ +AL + G VR+ + + K G N
Sbjct: 63 EDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 50 (22.7 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 185 VSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
+SV+++ D E+ + KGF +V F E+ R+A+
Sbjct: 218 LSVKVMTD-ESGKSKGFGFVSFERHEDARKAV 248
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 110 (43.8 bits), Expect = 0.00077, P = 0.00077
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 110 (43.8 bits), Expect = 0.00078, P = 0.00078
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 110 (43.8 bits), Expect = 0.00078, P = 0.00078
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|F1P4F6 [details] [associations]
symbol:Gga.8379 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 OMA:FAYVQYT EMBL:AADN02043720
IPI:IPI00584494 Ensembl:ENSGALT00000006576 Uniprot:F1P4F6
Length = 262
Score = 105 (42.0 bits), Expect = 0.00079, P = 0.00079
Identities = 34/125 (27%), Positives = 54/125 (43%)
Query: 12 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 69
PP T+ FV N+ + D+ R F +V V + D T R +GF Y + VDV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYSQIVDVRDAED 66
Query: 70 ALLKDGRITVDGLQVRLDIADGKRND-NKGGFNNKQNRXXXXXXXXXNKYNQHQGGSFNR 128
AL R + G Q+ + A G R N+ +N ++Y + + S+ R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNLYSSSRYDDYDRYRRSRSRSYER 126
Query: 129 DNMRN 133
R+
Sbjct: 127 RRSRS 131
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 109 (43.4 bits), Expect = 0.00079, P = 0.00079
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|G3V546 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V546 SMR:G3V546 Ensembl:ENST00000557403
ArrayExpress:G3V546 Bgee:G3V546 Uniprot:G3V546
Length = 115
Score = 87 (35.7 bits), Expect = 0.00087, P = 0.00087
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 29 DVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 87
D+E FF K+ VR++ D+ + R KG YVEF +++++ A+ G+ + G+ + +
Sbjct: 11 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLL-GVPIIVQ 69
Query: 88 IADGKRNDNKGGFNNKQ 104
+ ++N NN Q
Sbjct: 70 ASQAEKNRLAAMANNLQ 86
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 109 (43.4 bits), Expect = 0.00088, P = 0.00088
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 109 (43.4 bits), Expect = 0.00089, P = 0.00089
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 103 (41.3 bits), Expect = 0.00089, P = 0.00089
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 66
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 103 (41.3 bits), Expect = 0.00089, P = 0.00089
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 66
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 103 (41.3 bits), Expect = 0.00089, P = 0.00089
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 66
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 92 (37.4 bits), Expect = 0.00091, P = 0.00091
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
+VGNLP + + D+ ++F + SV++V++ T R KG+ +V +V + +AL G
Sbjct: 47 YVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAHG 106
Query: 76 RITVDGLQVRLDIADGKRNDN 96
+ + G + + IA + +
Sbjct: 107 K-DLQGRSLVVRIAKSREQQH 126
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 92 (37.4 bits), Expect = 0.00091, P = 0.00091
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 17 FVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 75
+VGNLP + + D+ ++F + SV++V++ T R KG+ +V +V + +AL G
Sbjct: 47 YVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAHG 106
Query: 76 RITVDGLQVRLDIADGKRNDN 96
+ + G + + IA + +
Sbjct: 107 K-DLQGRSLVVRIAKSREQQH 126
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 109 (43.4 bits), Expect = 0.00092, P = 0.00092
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 109 (43.4 bits), Expect = 0.00092, P = 0.00092
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 109 (43.4 bits), Expect = 0.00094, P = 0.00093
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 109 (43.4 bits), Expect = 0.00094, P = 0.00093
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 109 (43.4 bits), Expect = 0.00094, P = 0.00093
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 109 (43.4 bits), Expect = 0.00094, P = 0.00094
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|H0Y4X3 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
HGNC:HGNC:15923 ChiTaRS:RBM39 ProteinModelPortal:H0Y4X3
PRIDE:H0Y4X3 Ensembl:ENST00000448303 Bgee:H0Y4X3 Uniprot:H0Y4X3
Length = 337
Score = 106 (42.4 bits), Expect = 0.00097, P = 0.00097
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 27 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 86
Query: 74 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 104
G+ V G+ + + + ++N NN Q
Sbjct: 87 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 116
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 109 (43.4 bits), Expect = 0.00098, P = 0.00098
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 15 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 73
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 74 -DGRITVDGLQVRLDIADGKRN 94
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 81 (33.6 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 4 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRL--VKDK-ETDRFKGFCYVE 60
NQ+ + T FVGNLP +T + P + +S +L +K K D+ YV
Sbjct: 173 NQEEERLKNERTVFVGNLP--VT---CNKKIPAEGTLSKKLAAIKRKIHPDQKNINAYVV 227
Query: 61 FVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNK 97
F + QAL ++G DG ++R+D+A + +K
Sbjct: 228 FKEESAATQALKRNGAQIADGFRIRVDLASETSSRDK 264
Score = 66 (28.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 183 TLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 216
++++VR+V+DK T KGF YV F + +++ AL
Sbjct: 290 SIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL 323
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.140 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 227 183 0.00076 110 3 11 22 0.45 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 208
No. of states in DFA: 522 (56 KB)
Total size of DFA: 132 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.13u 0.12s 17.25t Elapsed: 00:00:01
Total cpu time: 17.15u 0.13s 17.28t Elapsed: 00:00:01
Start: Thu Aug 15 12:56:37 2013 End: Thu Aug 15 12:56:38 2013
WARNINGS ISSUED: 1