BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16800
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P10105|LAB_DROME Homeotic protein labial OS=Drosophila melanogaster GN=lab PE=1 SV=2
Length = 635
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/61 (90%), Positives = 60/61 (98%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
RTNFTNKQLTELEKEFHFN+YLTRARRIEIA+ LQLNETQVKIWFQNRRMKQKKR+KEG+
Sbjct: 511 RTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGL 570
Query: 199 L 199
+
Sbjct: 571 I 571
>sp|Q08821|HXA1_XENLA Homeobox protein Hox-A1 (Fragment) OS=Xenopus laevis GN=hoxa1 PE=2
SV=1
Length = 240
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 60/64 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQVKIWFQNRRMKQKKR K
Sbjct: 135 NTARTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQVKIWFQNRRMKQKKREK 194
Query: 196 EGIL 199
EG+L
Sbjct: 195 EGLL 198
>sp|Q1KL10|HXA1A_TAKRU Homeobox protein Hox-A1a OS=Takifugu rubripes GN=hoxa1a PE=3 SV=1
Length = 325
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 60/64 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQVKIWFQNRRMKQKKR K
Sbjct: 213 NTVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQVKIWFQNRRMKQKKREK 272
Query: 196 EGIL 199
EG+L
Sbjct: 273 EGLL 276
>sp|P49639|HXA1_HUMAN Homeobox protein Hox-A1 OS=Homo sapiens GN=HOXA1 PE=1 SV=2
Length = 335
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 60/64 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQVKIWFQNRRMKQKKR K
Sbjct: 230 NAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK 289
Query: 196 EGIL 199
EG+L
Sbjct: 290 EGLL 293
>sp|P09022|HXA1_MOUSE Homeobox protein Hox-A1 OS=Mus musculus GN=Hoxa1 PE=1 SV=2
Length = 331
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 60/64 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQVKIWFQNRRMKQKKR K
Sbjct: 226 NAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK 285
Query: 196 EGIL 199
EG+L
Sbjct: 286 EGLL 289
>sp|Q08820|HXD1_XENLA Homeobox protein Hox-D1 OS=Xenopus laevis GN=hoxd1 PE=2 SV=3
Length = 300
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 76/106 (71%), Gaps = 6/106 (5%)
Query: 100 GVHPHPTSPSTD-YTTPLTALKY---PPPAALSQHQSLLNNSG--RTNFTNKQLTELEKE 153
G +P P SP++D Y + +K PP ++ + + RTNFT KQLTELEKE
Sbjct: 159 GTYPKPASPASDSYVSTFDWMKVKRNPPKKSIPSEYGVTSPPCNVRTNFTTKQLTELEKE 218
Query: 154 FHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGIL 199
FHFNKYLTRARRIEIA+ LQLN+TQVKIWFQNRRMKQKKR +EG L
Sbjct: 219 FHFNKYLTRARRIEIANSLQLNDTQVKIWFQNRRMKQKKREREGTL 264
>sp|Q01822|HXD1_MOUSE Homeobox protein Hox-D1 OS=Mus musculus GN=Hoxd1 PE=2 SV=1
Length = 327
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 82/128 (64%), Gaps = 12/128 (9%)
Query: 80 PVKGEIGVTKVQIPSELSPLGVHPHPTSPSTDYTTPLTALKY-------PPPAALSQHQS 132
P G G + P+ G P P SP++ + ++ P + LS++ +
Sbjct: 169 PADGHPGPFQTVSPAP----GACPKPASPTSSLPAAHSTFEWMKVKRNAPKKSKLSEYGA 224
Query: 133 LLNNSG-RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191
S RTNF+ KQLTELEKEFHFNKYLTRARRIEIA+ LQLN+TQVKIWFQNRRMKQK
Sbjct: 225 TSPPSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNRRMKQK 284
Query: 192 KRIKEGIL 199
KR +EG+L
Sbjct: 285 KREREGLL 292
>sp|Q9IA19|HXA1_HETFR Homeobox protein Hox-A1 OS=Heterodontus francisci GN=HOXA1 PE=3
SV=1
Length = 326
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 59/63 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQVKIWFQNRRMKQKKR K
Sbjct: 222 NTVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQVKIWFQNRRMKQKKREK 281
Query: 196 EGI 198
EG+
Sbjct: 282 EGL 284
>sp|Q28IU6|HXD1_XENTR Homeobox protein Hox-D1 OS=Xenopus tropicalis GN=hoxd1 PE=2 SV=1
Length = 301
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 77/106 (72%), Gaps = 6/106 (5%)
Query: 100 GVHPHPTSPSTD-YTTPLTALKY---PPPAALSQHQSLLN--NSGRTNFTNKQLTELEKE 153
G +P P SP++D + + +K PP +L + + + RTNFT KQLTELEKE
Sbjct: 162 GTYPKPASPASDTHVSTFDWMKVKRNPPKKSLQSEYGVASPPCTVRTNFTTKQLTELEKE 221
Query: 154 FHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGIL 199
FHFNKYLTRARRIEIA+ LQLN+TQVKIWFQNRRMKQKKR +EG L
Sbjct: 222 FHFNKYLTRARRIEIANSLQLNDTQVKIWFQNRRMKQKKREREGSL 267
>sp|Q98SI1|HXA1A_DANRE Homeobox protein Hox-A1a OS=Danio rerio GN=hoxa1a PE=2 SV=1
Length = 329
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/64 (85%), Positives = 60/64 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNF+ KQLTELEKEFHFNKYLTRARR+EIA+ LQLNETQVKIWFQNRRMKQKKR K
Sbjct: 226 NTVRTNFSTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK 285
Query: 196 EGIL 199
EG+L
Sbjct: 286 EGLL 289
>sp|P31259|HXB1_CHICK Homeobox protein Hox-B1 OS=Gallus gallus GN=HOXB1 PE=3 SV=1
Length = 309
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 59/63 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHFNKYLTRARR+EIA+ L+LNETQVKIWFQNRRMKQKKR K
Sbjct: 214 NTIRTNFTTKQLTELEKEFHFNKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREK 273
Query: 196 EGI 198
EG+
Sbjct: 274 EGL 276
>sp|P31357|HXB1_AMBME Homeobox protein Hox-B1 (Fragment) OS=Ambystoma mexicanum PE=3 SV=1
Length = 184
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 59/63 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
NS RTNFT KQL+ELEKEFHFNKYLTRARR+EIA+ L+LNETQVKIWFQNRRMKQKKR K
Sbjct: 88 NSIRTNFTTKQLSELEKEFHFNKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREK 147
Query: 196 EGI 198
EG+
Sbjct: 148 EGL 150
>sp|O42366|HXB1A_DANRE Homeobox protein Hox-B1a OS=Danio rerio GN=hoxb1a PE=2 SV=2
Length = 311
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 59/63 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHF+KYLTRARR+EIA+ L+LNETQVKIWFQNRRMKQKKR K
Sbjct: 218 NTIRTNFTTKQLTELEKEFHFSKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREK 277
Query: 196 EGI 198
EG+
Sbjct: 278 EGL 280
>sp|Q90346|HXB1_CYPCA Homeobox protein Hox-B1 OS=Cyprinus carpio GN=hoxb1 PE=2 SV=1
Length = 315
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 59/63 (93%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHF+KYLTRARR+EIA+ L+LNETQVKIWFQNRRMKQKKR K
Sbjct: 222 NTIRTNFTTKQLTELEKEFHFSKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREK 281
Query: 196 EGI 198
EG+
Sbjct: 282 EGL 284
>sp|Q9GZZ0|HXD1_HUMAN Homeobox protein Hox-D1 OS=Homo sapiens GN=HOXD1 PE=1 SV=1
Length = 328
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
RTNF+ KQLTELEKEFHFNKYLTRARRIEIA+ L LN+TQVKIWFQNRRMKQKKR +EG+
Sbjct: 233 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKREREGL 292
Query: 199 L 199
L
Sbjct: 293 L 293
>sp|A2T6Z0|HXB1_PANTR Homeobox protein Hox-B1 OS=Pan troglodytes GN=HOXB1 PE=3 SV=1
Length = 301
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
Query: 103 PHPTSPSTDYTTPLTALKY---PPPAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNK 158
P P+ P+T +K PP A L + SG RTNFT +QLTELEKEFHFNK
Sbjct: 167 PCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNK 226
Query: 159 YLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197
YL+RARR+EIA+ L+LNETQVKIWFQNRRMKQKKR +EG
Sbjct: 227 YLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 265
>sp|A1YG01|HXB1_PANPA Homeobox protein Hox-B1 OS=Pan paniscus GN=HOXB1 PE=3 SV=1
Length = 301
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
Query: 103 PHPTSPSTDYTTPLTALKY---PPPAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNK 158
P P+ P+T +K PP A L + SG RTNFT +QLTELEKEFHFNK
Sbjct: 167 PCPSEPNTPTXRTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNK 226
Query: 159 YLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197
YL+RARR+EIA+ L+LNETQVKIWFQNRRMKQKKR +EG
Sbjct: 227 YLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 265
>sp|P17919|HXB1_MOUSE Homeobox protein Hox-B1 OS=Mus musculus GN=Hoxb1 PE=2 SV=1
Length = 297
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 58/65 (89%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQVKIWFQNRRMKQKKR +EG
Sbjct: 203 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGG 262
Query: 199 LIGVG 203
+ G
Sbjct: 263 RMPAG 267
>sp|A2T7J2|HXB1_PONPY Homeobox protein Hox-B1 OS=Pongo pygmaeus GN=HOXB1 PE=3 SV=1
Length = 301
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
Query: 103 PHPTSPSTDYTTPLTALKY---PPPAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNK 158
P P+ P+T +K PP A L + SG RTNFT +QLTELEKEFHFNK
Sbjct: 167 PCPSEPNTPTARTFDWMKVKRNPPKTAKVSELGLGSPSGLRTNFTTRQLTELEKEFHFNK 226
Query: 159 YLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197
YL+RARR+EIA+ L+LNETQVKIWFQNRRMKQKKR +EG
Sbjct: 227 YLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 265
>sp|Q90423|HXB1B_DANRE Homeobox protein Hox-B1b OS=Danio rerio GN=hoxb1b PE=2 SV=3
Length = 307
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197
RTNFT KQLTELEKEFHFNKYLTRARR+E+A+ L+LNETQVKIWFQNRRMKQKKR KEG
Sbjct: 212 RTNFTTKQLTELEKEFHFNKYLTRARRVEVAATLELNETQVKIWFQNRRMKQKKREKEG 270
>sp|Q98SH9|HXC1A_DANRE Homeobox protein Hox-C1a OS=Danio rerio GN=hoxc1a PE=2 SV=1
Length = 302
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 65/84 (77%), Gaps = 6/84 (7%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG- 197
RTNFT KQLTELEKEFHFNKYLTRARRIEIA+ LQL+ETQVKIWFQNRRMKQKK ++EG
Sbjct: 219 RTNFTTKQLTELEKEFHFNKYLTRARRIEIANPLQLSETQVKIWFQNRRMKQKKMLREGL 278
Query: 198 -----ILIGVGEGSLMGAQGSSPN 216
++ G E S SSP+
Sbjct: 279 AQGLMLISGCDEDSKKSDTCSSPD 302
>sp|A2T6H5|HXB1_MACNE Homeobox protein Hox-B1 OS=Macaca nemestrina GN=HOXB1 PE=3 SV=1
Length = 304
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 56/59 (94%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197
RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQVKIWFQNRRMKQKKR +EG
Sbjct: 210 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 268
>sp|A2D649|HXB1_MACMU Homeobox protein Hox-B1 OS=Macaca mulatta GN=HOXB1 PE=3 SV=1
Length = 304
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 56/59 (94%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197
RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQVKIWFQNRRMKQKKR +EG
Sbjct: 210 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 268
>sp|A2D4R4|HXB1_ATEGE Homeobox protein Hox-B1 OS=Ateles geoffroyi GN=HOXB1 PE=3 SV=1
Length = 304
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 56/59 (94%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197
RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQVKIWFQNRRMKQKKR +EG
Sbjct: 210 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 268
>sp|P14653|HXB1_HUMAN Homeobox protein Hox-B1 OS=Homo sapiens GN=HOXB1 PE=1 SV=2
Length = 301
Score = 113 bits (283), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 70/98 (71%), Gaps = 4/98 (4%)
Query: 103 PHPTSPSTDYTTPLTALKY---PPPAALSQHQSLLNNSG-RTNFTNKQLTELEKEFHFNK 158
P P+ P+T +K PP A L + SG RTNFT +QLTELEKEFHFNK
Sbjct: 167 PCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNK 226
Query: 159 YLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196
YL+RARR+EIA+ L+LNETQVKIWFQNRRMKQKKR +E
Sbjct: 227 YLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 264
>sp|O08656|HXA1_RAT Homeobox protein Hox-A1 OS=Rattus norvegicus GN=Hoxa1 PE=2 SV=1
Length = 333
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/64 (85%), Positives = 58/64 (90%), Gaps = 1/64 (1%)
Query: 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
N+ RTNFT KQLTELEKEFHFNKYLTRAR EIA+ LQLNETQVKIWFQNRRMKQKKR K
Sbjct: 229 NAVRTNFTTKQLTELEKEFHFNKYLTRARS-EIAASLQLNETQVKIWFQNRRMKQKKREK 287
Query: 196 EGIL 199
EG+L
Sbjct: 288 EGLL 291
>sp|Q1KKX5|HXB1A_TAKRU Homeobox protein Hox-B1a OS=Takifugu rubripes GN=hoxb1a PE=3 SV=1
Length = 391
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 59/63 (93%)
Query: 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194
N++ RTNF+ +QLTELEKEFHF+KYLTRARR+EIA+ L+LNETQVKIWFQNRRMKQKKR
Sbjct: 286 NSAIRTNFSTRQLTELEKEFHFSKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 345
Query: 195 KEG 197
+EG
Sbjct: 346 REG 348
>sp|Q1KKW8|HXB1B_TAKRU Homeobox protein Hox-B1b OS=Takifugu rubripes GN=hoxb1b PE=3 SV=1
Length = 280
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 60/67 (89%), Gaps = 1/67 (1%)
Query: 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194
+N RTNFT KQLTELEKEFHFNKYLTRARR+E+A+ L+LNETQVKIWFQNRRMKQKKR
Sbjct: 195 HNVIRTNFTTKQLTELEKEFHFNKYLTRARRVEVAASLELNETQVKIWFQNRRMKQKKRE 254
Query: 195 K-EGILI 200
K G+L+
Sbjct: 255 KLGGVLV 261
>sp|Q0VCS4|HXA2_BOVIN Homeobox protein Hox-A2 OS=Bos taurus GN=HOXA2 PE=2 SV=1
Length = 372
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 60/89 (67%), Gaps = 8/89 (8%)
Query: 115 PLTALKYPPPAALSQHQSL--LNNSG------RTNFTNKQLTELEKEFHFNKYLTRARRI 166
P +A PA LS +SL + SG RT +TN QL ELEKEFHFNKYL R RR+
Sbjct: 111 PASAASATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRV 170
Query: 167 EIASVLQLNETQVKIWFQNRRMKQKKRIK 195
EIA++L L E QVK+WFQNRRMK K++ +
Sbjct: 171 EIAALLDLTERQVKVWFQNRRMKHKRQTQ 199
>sp|Q6IEI0|HXB2A_TAKRU Homeobox protein Hox-B2a OS=Takifugu rubripes GN=hoxb2a PE=3 SV=1
Length = 415
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 55/85 (64%), Gaps = 8/85 (9%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E QVK+WFQNRRMK K++
Sbjct: 177 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTHHRD 236
Query: 199 LIGVGEGS--------LMGAQGSSP 215
G G S L GA SSP
Sbjct: 237 GSGGGNDSNEPGGFEPLEGADASSP 261
>sp|A9L937|HXA2_PAPAN Homeobox protein Hox-A2 OS=Papio anubis GN=HOXA2 PE=3 SV=1
Length = 377
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 8/80 (10%)
Query: 124 PAALSQHQSL--LNNSG------RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLN 175
PA LS +SL + SG RT +TN QL ELEKEFHFNKYL R RR+EIA++L L
Sbjct: 125 PACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLT 184
Query: 176 ETQVKIWFQNRRMKQKKRIK 195
E QVK+WFQNRRMK K++ +
Sbjct: 185 ERQVKVWFQNRRMKHKRQTQ 204
>sp|P14652|HXB2_HUMAN Homeobox protein Hox-B2 OS=Homo sapiens GN=HOXB2 PE=1 SV=1
Length = 356
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E QVK+WFQNRRMK K++ +
Sbjct: 147 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
>sp|O42367|HXB2A_DANRE Homeobox protein Hox-B2a OS=Danio rerio GN=hoxb2a PE=2 SV=2
Length = 390
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E QVK+WFQNRRMK K++
Sbjct: 162 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTTHHR 221
Query: 199 LIGVGEGS----LMGAQGSSP 215
GE S L G SSP
Sbjct: 222 DGQEGEPSGFDLLEGTDASSP 242
>sp|Q9IA20|HXA2_HETFR Homeobox protein Hox-A2 OS=Heterodontus francisci GN=HOXA2 PE=3
SV=1
Length = 363
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 79/137 (57%), Gaps = 35/137 (25%)
Query: 92 IPSELSPLGVHPHPTSP--STDYTTPLTALKYPP---------------------PAA-- 126
IPS L+P HP + P S + T+PL A PP PAA
Sbjct: 56 IPS-LNP-SSHPRQSRPKQSPNGTSPLPAATLPPEYPWMKEKKNSKKNHLPASSGPAASC 113
Query: 127 LSQHQS--LLNNSG------RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQ 178
LSQ ++ + +N+G RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E Q
Sbjct: 114 LSQKETHEIPDNTGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 173
Query: 179 VKIWFQNRRMKQKKRIK 195
VK+WFQNRRMK K++ +
Sbjct: 174 VKVWFQNRRMKHKRQTQ 190
>sp|O43365|HXA3_HUMAN Homeobox protein Hox-A3 OS=Homo sapiens GN=HOXA3 PE=2 SV=1
Length = 443
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 7/78 (8%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q+KIWFQNRRMK KK K
Sbjct: 195 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK--- 251
Query: 199 LIGVGEGSLMGAQGSSPN 216
G+G L + G SP+
Sbjct: 252 ----GKGMLTSSGGQSPS 265
>sp|P02831|HXA3_MOUSE Homeobox protein Hox-A3 OS=Mus musculus GN=Hoxa3 PE=1 SV=2
Length = 443
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 7/78 (8%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q+KIWFQNRRMK KK K
Sbjct: 196 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK--- 252
Query: 199 LIGVGEGSLMGAQGSSPN 216
G+G L + G SP+
Sbjct: 253 ----GKGMLTSSGGQSPS 266
>sp|Q08DG7|HXA3_BOVIN Homeobox protein Hox-A3 OS=Bos taurus GN=HOXA3 PE=2 SV=1
Length = 442
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 7/78 (8%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q+KIWFQNRRMK KK K
Sbjct: 195 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK--- 251
Query: 199 LIGVGEGSLMGAQGSSPN 216
G+G L + G SP+
Sbjct: 252 ----GKGMLTSSGGQSPS 265
>sp|P0C1T1|HXB2_MOUSE Homeobox protein Hox-B2 OS=Mus musculus GN=Hoxb2 PE=2 SV=1
Length = 354
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E QVK+WFQNRRMK K++ +
Sbjct: 145 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 201
>sp|Q1KL11|HXA2A_TAKRU Homeobox protein Hox-A2a OS=Takifugu rubripes GN=hoxa2a PE=3 SV=1
Length = 363
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E QVK+WFQNRRMK K++ +
Sbjct: 141 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 197
>sp|P13544|HXD1_CHICK Homeobox protein Hox-D1 (Fragment) OS=Gallus gallus GN=HOXD1 PE=3
SV=1
Length = 67
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 53/60 (88%)
Query: 137 SGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196
S RT+F+ +QLTELEKEFHF++YL+RARR+E+A L+L + QVK+WFQNRRMKQKKR +E
Sbjct: 3 SLRTSFSTRQLTELEKEFHFSRYLSRARRLEVARSLRLRDAQVKVWFQNRRMKQKKRERE 62
>sp|P31245|HXA2_MOUSE Homeobox protein Hox-A2 OS=Mus musculus GN=Hoxa2 PE=2 SV=1
Length = 372
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 8/80 (10%)
Query: 124 PAALSQHQSL--LNNSG------RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLN 175
PA L +SL + SG RT +TN QL ELEKEFHFNKYL R RR+EIA++L L
Sbjct: 120 PACLGHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLT 179
Query: 176 ETQVKIWFQNRRMKQKKRIK 195
E QVK+WFQNRRMK K++ +
Sbjct: 180 ERQVKVWFQNRRMKHKRQTQ 199
>sp|P31246|HXA2_RAT Homeobox protein Hox-A2 OS=Rattus norvegicus GN=Hoxa2 PE=2 SV=1
Length = 372
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 8/80 (10%)
Query: 124 PAALSQHQSL--LNNSG------RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLN 175
PA L +SL + SG RT +TN QL ELEKEFHFNKYL R RR+EIA++L L
Sbjct: 120 PACLGHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLT 179
Query: 176 ETQVKIWFQNRRMKQKKRIK 195
E QVK+WFQNRRMK K++ +
Sbjct: 180 ERQVKVWFQNRRMKHKRQTQ 199
>sp|O42365|HXA2B_DANRE Homeobox protein Hox-A2b OS=Danio rerio GN=hoxa2b PE=2 SV=2
Length = 363
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E QVK+WFQNRRMK K++ +
Sbjct: 137 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 193
>sp|P31249|HXD3_HUMAN Homeobox protein Hox-D3 OS=Homo sapiens GN=HOXD3 PE=1 SV=3
Length = 432
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK-EG 197
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q+KIWFQNRRMK KK K +G
Sbjct: 198 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKG 257
Query: 198 IL 199
IL
Sbjct: 258 IL 259
>sp|O43364|HXA2_HUMAN Homeobox protein Hox-A2 OS=Homo sapiens GN=HOXA2 PE=1 SV=1
Length = 376
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E QVK+WFQNRRMK K++ +
Sbjct: 147 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
>sp|O93353|HXA3_CHICK Homeobox protein Hox-A3 OS=Gallus gallus GN=HOXA3 PE=2 SV=2
Length = 413
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 54/78 (69%), Gaps = 7/78 (8%)
Query: 138 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q+KIWFQNRRMK KK K
Sbjct: 176 ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK-- 233
Query: 198 ILIGVGEGSLMGAQGSSP 215
G+G + + G SP
Sbjct: 234 -----GKGMMTSSGGQSP 246
>sp|Q9IA21|HXA3_HETFR Homeobox protein Hox-A3 OS=Heterodontus francisci GN=HOXA3 PE=3
SV=1
Length = 410
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 138 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK-E 196
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q+KIWFQNRRMK KK K +
Sbjct: 171 ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 230
Query: 197 GILIGVG 203
G+L G
Sbjct: 231 GMLTSSG 237
>sp|P14651|HXB3_HUMAN Homeobox protein Hox-B3 OS=Homo sapiens GN=HOXB3 PE=1 SV=2
Length = 431
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK-EG 197
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L+E Q+KIWFQNRRMK KK K +G
Sbjct: 192 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKG 251
Query: 198 ILIGVGEGSLMGA 210
+ G S G+
Sbjct: 252 LASSSGGPSPAGS 264
>sp|B0VXK3|HXA2_CALJA Homeobox protein Hox-A2 OS=Callithrix jacchus GN=HOXA2 PE=3 SV=1
Length = 375
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
RT +TN QL ELEKEFHFNKYL R RR+EIA++L L E QVK+WFQNRRMK K++ +
Sbjct: 146 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 202
>sp|P09027|HXD3_MOUSE Homeobox protein Hox-D3 OS=Mus musculus GN=Hoxd3 PE=2 SV=4
Length = 433
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK-EG 197
RT +T+ QL ELEKEFHFN+YL R RR+E+A++L L E Q+KIWFQNRRMK KK K +G
Sbjct: 199 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKG 258
Query: 198 IL 199
IL
Sbjct: 259 IL 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,765,983
Number of Sequences: 539616
Number of extensions: 4064901
Number of successful extensions: 16485
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 14395
Number of HSP's gapped (non-prelim): 2118
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)