Query psy16800
Match_columns 221
No_of_seqs 217 out of 1300
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:27:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 4.2E-20 1.4E-24 135.2 4.5 64 133-196 20-83 (84)
2 2dms_A Homeobox protein OTX2; 99.8 7.3E-20 2.5E-24 132.9 5.4 65 134-198 6-70 (80)
3 2dmq_A LIM/homeobox protein LH 99.8 1E-19 3.5E-24 131.9 6.2 64 134-197 6-69 (80)
4 1nk2_P Homeobox protein VND; h 99.8 1.5E-19 5.2E-24 130.4 5.5 65 133-197 7-71 (77)
5 2dmt_A Homeobox protein BARH-l 99.8 8.3E-20 2.9E-24 132.7 4.1 63 133-195 15-77 (80)
6 2cue_A Paired box protein PAX6 99.8 1.3E-19 4.4E-24 131.7 4.9 66 134-199 6-71 (80)
7 1ahd_P Antennapedia protein mu 99.8 7.2E-20 2.5E-24 129.3 3.2 63 135-197 2-64 (68)
8 1ftt_A TTF-1 HD, thyroid trans 99.8 1.2E-19 4.2E-24 128.0 4.1 65 135-199 2-66 (68)
9 2h1k_A IPF-1, pancreatic and d 99.8 1.2E-19 4.2E-24 126.1 3.9 60 135-194 3-62 (63)
10 2dmu_A Homeobox protein goosec 99.8 1.6E-19 5.3E-24 127.9 4.4 62 134-195 6-67 (70)
11 2cra_A Homeobox protein HOX-B1 99.8 8.6E-20 2.9E-24 129.4 2.8 62 134-195 6-67 (70)
12 2vi6_A Homeobox protein nanog; 99.8 8.1E-20 2.8E-24 126.5 2.4 59 135-193 3-61 (62)
13 1ig7_A Homeotic protein MSX-1; 99.8 1.8E-19 6.2E-24 122.9 4.1 57 136-192 1-57 (58)
14 1zq3_P PRD-4, homeotic bicoid 99.8 2.4E-19 8.1E-24 126.5 4.8 63 135-197 2-64 (68)
15 2hdd_A Protein (engrailed home 99.8 1.3E-19 4.3E-24 125.2 3.3 58 135-192 3-60 (61)
16 2da3_A Alpha-fetoprotein enhan 99.8 1.2E-19 4.2E-24 131.3 3.3 62 134-195 16-77 (80)
17 1puf_A HOX-1.7, homeobox prote 99.8 3.4E-19 1.2E-23 128.6 5.5 63 134-196 12-74 (77)
18 2da1_A Alpha-fetoprotein enhan 99.8 9.5E-20 3.3E-24 128.9 2.3 63 134-196 6-68 (70)
19 2m0c_A Homeobox protein arista 99.8 1.9E-19 6.3E-24 128.7 3.4 66 134-199 8-73 (75)
20 2da2_A Alpha-fetoprotein enhan 99.8 1.5E-19 5.2E-24 127.9 2.9 63 134-196 6-68 (70)
21 2e1o_A Homeobox protein PRH; D 99.8 3.6E-19 1.2E-23 126.1 4.3 61 135-195 7-67 (70)
22 1yz8_P Pituitary homeobox 2; D 99.8 1.2E-19 4.2E-24 127.9 1.8 63 135-197 3-65 (68)
23 1jgg_A Segmentation protein EV 99.8 3E-19 1E-23 122.8 3.6 58 136-193 2-59 (60)
24 2l7z_A Homeobox protein HOX-A1 99.8 4E-19 1.4E-23 127.1 4.3 63 134-196 6-68 (73)
25 2r5y_A Homeotic protein sex co 99.8 3.4E-19 1.2E-23 131.7 4.0 61 134-194 27-87 (88)
26 2da4_A Hypothetical protein DK 99.8 2.2E-19 7.5E-24 130.4 2.9 64 133-196 6-73 (80)
27 2k40_A Homeobox expressed in E 99.8 2.7E-19 9.2E-24 125.7 3.2 63 136-198 2-64 (67)
28 2djn_A Homeobox protein DLX-5; 99.7 1.8E-19 6E-24 127.8 2.0 62 134-195 6-67 (70)
29 1fjl_A Paired protein; DNA-bin 99.7 5.4E-19 1.8E-23 128.6 4.6 63 133-195 16-78 (81)
30 1b8i_A Ultrabithorax, protein 99.7 3.8E-19 1.3E-23 129.7 3.7 62 134-195 19-80 (81)
31 1wh5_A ZF-HD homeobox family p 99.7 3.3E-19 1.1E-23 130.0 3.3 59 134-192 16-78 (80)
32 3a01_A Homeodomain-containing 99.7 8.6E-19 2.9E-23 131.1 5.6 64 134-197 16-79 (93)
33 2hi3_A Homeodomain-only protei 99.7 9E-19 3.1E-23 125.1 5.3 62 136-197 3-65 (73)
34 1bw5_A ISL-1HD, insulin gene e 99.7 2.5E-19 8.5E-24 125.5 2.3 60 135-194 3-62 (66)
35 1uhs_A HOP, homeodomain only p 99.7 7.2E-19 2.4E-23 125.3 4.5 62 136-197 2-64 (72)
36 2ecb_A Zinc fingers and homeob 99.7 7.9E-19 2.7E-23 130.7 4.9 65 141-205 17-81 (89)
37 3rkq_A Homeobox protein NKX-2. 99.7 5.7E-19 2E-23 120.0 3.4 57 135-191 2-58 (58)
38 1b72_A Protein (homeobox prote 99.7 6.2E-19 2.1E-23 132.6 3.7 64 134-197 33-96 (97)
39 3a02_A Homeobox protein arista 99.7 4.6E-19 1.6E-23 121.9 2.6 58 138-195 2-59 (60)
40 1wh7_A ZF-HD homeobox family p 99.7 5.1E-19 1.8E-23 129.1 2.8 58 134-192 16-78 (80)
41 2cuf_A FLJ21616 protein; homeo 99.7 1.9E-18 6.4E-23 129.5 5.3 65 134-198 6-85 (95)
42 3a03_A T-cell leukemia homeobo 99.7 1E-18 3.5E-23 118.8 3.5 54 140-193 2-55 (56)
43 2dn0_A Zinc fingers and homeob 99.7 6.2E-19 2.1E-23 126.9 2.5 64 136-199 9-72 (76)
44 2ecc_A Homeobox and leucine zi 99.7 1.7E-18 5.9E-23 125.3 4.8 61 137-197 5-65 (76)
45 2ly9_A Zinc fingers and homeob 99.7 1.2E-18 4.1E-23 124.5 3.6 62 135-196 6-67 (74)
46 2da5_A Zinc fingers and homeob 99.7 1.7E-18 5.7E-23 124.5 4.4 61 136-196 8-68 (75)
47 1akh_A Protein (mating-type pr 99.7 9.6E-19 3.3E-23 120.5 2.4 58 134-191 4-61 (61)
48 1b72_B Protein (PBX1); homeodo 99.7 1.1E-18 3.8E-23 128.4 2.4 62 136-197 2-66 (87)
49 3nar_A ZHX1, zinc fingers and 99.7 2.2E-18 7.7E-23 129.4 3.1 62 134-195 24-85 (96)
50 2da6_A Hepatocyte nuclear fact 99.7 7.6E-18 2.6E-22 128.2 5.8 69 134-202 5-94 (102)
51 1x2n_A Homeobox protein pknox1 99.7 7.8E-18 2.7E-22 120.1 4.6 63 134-196 6-71 (73)
52 1puf_B PRE-B-cell leukemia tra 99.7 6E-18 2.1E-22 120.6 4.0 61 136-196 2-65 (73)
53 2dmp_A Zinc fingers and homeob 99.7 2.9E-17 1E-21 121.8 6.3 60 140-199 18-77 (89)
54 1du6_A PBX1, homeobox protein 99.7 4E-18 1.4E-22 118.6 1.3 58 135-192 3-63 (64)
55 1k61_A Mating-type protein alp 99.7 1.4E-17 4.8E-22 114.3 3.4 56 138-193 1-59 (60)
56 2dmn_A Homeobox protein TGIF2L 99.7 5.5E-17 1.9E-21 118.8 5.8 64 134-197 6-72 (83)
57 2cqx_A LAG1 longevity assuranc 99.7 4.4E-18 1.5E-22 121.7 -0.1 59 136-194 9-68 (72)
58 1wi3_A DNA-binding protein SAT 99.7 2.9E-17 1E-21 116.0 3.3 56 134-189 6-62 (71)
59 2xsd_C POU domain, class 3, tr 99.7 1.5E-17 5.2E-22 136.3 1.9 63 134-196 98-160 (164)
60 2l9r_A Homeobox protein NKX-3. 99.7 1.7E-17 5.8E-22 117.9 1.7 57 140-196 9-65 (69)
61 1lfb_A Liver transcription fac 99.7 1.4E-17 4.9E-22 126.1 1.1 68 133-200 7-95 (99)
62 1le8_B Mating-type protein alp 99.7 3.1E-17 1.1E-21 120.0 2.9 60 136-195 3-65 (83)
63 1e3o_C Octamer-binding transcr 99.7 2.5E-17 8.4E-22 134.4 2.5 60 134-193 100-159 (160)
64 1mnm_C Protein (MAT alpha-2 tr 99.6 5.1E-17 1.7E-21 119.7 4.0 58 134-191 26-86 (87)
65 1au7_A Protein PIT-1, GHF-1; c 99.6 2.4E-17 8.4E-22 132.6 2.4 60 134-193 86-145 (146)
66 3nau_A Zinc fingers and homeob 99.6 4.1E-17 1.4E-21 114.8 3.1 53 142-194 11-63 (66)
67 3d1n_I POU domain, class 6, tr 99.6 7.1E-17 2.4E-21 130.3 3.6 59 134-192 92-150 (151)
68 2e19_A Transcription factor 8; 99.6 5.5E-17 1.9E-21 113.5 1.9 54 139-192 7-60 (64)
69 1x2m_A LAG1 longevity assuranc 99.6 6.4E-17 2.2E-21 113.4 1.0 50 144-193 9-59 (64)
70 3l1p_A POU domain, class 5, tr 99.6 1.3E-16 4.6E-21 129.4 2.8 60 134-193 95-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 2.3E-16 7.9E-21 128.7 1.8 63 134-196 96-158 (164)
72 3k2a_A Homeobox protein MEIS2; 99.5 2E-15 6.9E-20 106.3 2.4 57 140-196 3-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 8.6E-15 3E-19 123.0 -0.2 60 133-192 113-193 (194)
74 2da7_A Zinc finger homeobox pr 99.4 6.1E-14 2.1E-18 99.5 2.6 46 144-189 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.4 4.9E-13 1.7E-17 99.2 5.3 58 140-197 10-70 (89)
76 2h8r_A Hepatocyte nuclear fact 99.3 2.4E-13 8.2E-18 116.0 2.7 58 133-190 140-218 (221)
77 1mh3_A Maltose binding-A1 home 99.2 9E-13 3.1E-17 118.6 1.1 56 136-191 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 4.4E-09 1.5E-13 65.7 1.6 21 177-197 1-21 (37)
79 2ys9_A Homeobox and leucine zi 94.5 0.011 3.9E-07 41.4 1.2 38 147-184 18-55 (70)
80 1hlv_A CENP-B, major centromer 64.1 4.9 0.00017 29.6 3.1 49 138-189 4-52 (131)
81 2glo_A Brinker CG9653-PA; prot 61.2 3 0.0001 26.9 1.2 46 139-185 3-48 (59)
82 3hug_A RNA polymerase sigma fa 57.8 5.3 0.00018 27.9 2.1 51 141-196 37-87 (92)
83 1lq7_A Alpha3W; three helix bu 54.7 4.7 0.00016 26.7 1.2 19 23-41 45-63 (67)
84 2rgt_A Fusion of LIM/homeobox 53.7 0.29 9.9E-06 38.8 -5.8 30 133-162 134-163 (169)
85 1jko_C HIN recombinase, DNA-in 53.5 3.3 0.00011 24.9 0.4 43 141-188 5-47 (52)
86 2elh_A CG11849-PA, LD40883P; s 53.1 9.4 0.00032 26.5 2.8 44 136-184 17-60 (87)
87 2o8x_A Probable RNA polymerase 51.8 3.5 0.00012 26.7 0.3 50 141-195 15-64 (70)
88 1tc3_C Protein (TC3 transposas 49.6 8.4 0.00029 22.5 1.8 40 141-185 5-44 (51)
89 3ul0_C Nuclear CAP-binding pro 48.4 8 0.00027 21.2 1.3 13 12-24 4-16 (26)
90 3c57_A Two component transcrip 44.4 4.9 0.00017 28.5 0.1 51 140-196 26-76 (95)
91 3mzy_A RNA polymerase sigma-H 43.6 13 0.00046 27.3 2.5 50 141-196 109-158 (164)
92 1p4w_A RCSB; solution structur 40.0 10 0.00036 27.3 1.3 47 139-191 32-78 (99)
93 2p7v_B Sigma-70, RNA polymeras 39.3 12 0.00041 24.4 1.5 53 141-194 5-57 (68)
94 2i7u_A Four-alpha-helix bundle 38.8 11 0.00037 24.6 1.1 18 21-38 30-47 (62)
95 1je8_A Nitrate/nitrite respons 38.1 12 0.00042 25.6 1.4 48 140-193 20-67 (82)
96 1iuf_A Centromere ABP1 protein 37.8 25 0.00085 26.7 3.3 50 136-185 6-59 (144)
97 3q0w_A HTH-type transcriptiona 37.6 6.2 0.00021 31.4 -0.3 42 147-189 50-91 (236)
98 1fse_A GERE; helix-turn-helix 35.6 16 0.00055 23.6 1.6 47 139-191 9-55 (74)
99 2jn6_A Protein CGL2762, transp 35.1 21 0.00071 24.8 2.2 42 139-184 3-45 (97)
100 1x3u_A Transcriptional regulat 33.5 13 0.00046 24.5 1.0 46 141-192 16-61 (79)
101 1s7o_A Hypothetical UPF0122 pr 32.9 24 0.00082 25.9 2.3 50 141-195 22-71 (113)
102 1rp3_A RNA polymerase sigma fa 30.2 14 0.00048 29.2 0.7 50 141-195 187-236 (239)
103 1ku3_A Sigma factor SIGA; heli 29.7 26 0.00088 23.0 1.9 50 141-191 10-59 (73)
104 3i5g_B Myosin regulatory light 28.7 91 0.0031 23.1 5.2 40 138-177 6-50 (153)
105 2lv7_A Calcium-binding protein 28.6 49 0.0017 23.2 3.3 47 138-184 26-79 (100)
106 3bni_A Putative TETR-family tr 28.3 9.5 0.00032 30.1 -0.7 41 147-188 49-89 (229)
107 2rnj_A Response regulator prot 26.8 14 0.00048 25.6 0.1 47 140-192 28-74 (91)
108 1xsv_A Hypothetical UPF0122 pr 26.2 33 0.0011 25.0 2.1 50 141-195 25-74 (113)
109 2rn7_A IS629 ORFA; helix, all 25.8 38 0.0013 23.8 2.3 46 139-184 4-52 (108)
110 2x48_A CAG38821; archeal virus 25.4 29 0.00099 21.3 1.4 39 141-184 13-53 (55)
111 2kvr_A Ubiquitin carboxyl-term 24.1 36 0.0012 25.9 2.0 23 165-187 72-94 (130)
112 2qko_A Possible transcriptiona 23.8 31 0.0011 26.4 1.6 45 146-191 33-77 (215)
113 3ulq_B Transcriptional regulat 23.2 38 0.0013 23.6 1.8 46 139-190 27-72 (90)
114 1tty_A Sigma-A, RNA polymerase 23.0 29 0.001 23.7 1.2 49 141-192 18-68 (87)
115 2lfw_A PHYR sigma-like domain; 22.8 20 0.00069 27.1 0.3 50 141-195 93-142 (157)
116 1or7_A Sigma-24, RNA polymeras 21.5 37 0.0013 25.8 1.7 49 141-194 140-188 (194)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=4.2e-20 Score=135.17 Aligned_cols=64 Identities=39% Similarity=0.614 Sum_probs=60.2
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
...+|.||.|+..|+.+||.+|..++||+..++..||..|+|++.+|+|||||||+|+|+..+.
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 3468889999999999999999999999999999999999999999999999999999987764
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=7.3e-20 Score=132.94 Aligned_cols=65 Identities=34% Similarity=0.502 Sum_probs=61.3
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhcc
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g~ 198 (221)
..+|.|+.|+..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 45888999999999999999999999999999999999999999999999999999999887643
No 3
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=131.92 Aligned_cols=64 Identities=23% Similarity=0.384 Sum_probs=60.8
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
..+|.||.||..|+.+||.+|..++||+..++..||..|+|++.+|+|||||||+|+|++....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 3588899999999999999999999999999999999999999999999999999999988764
No 4
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=1.5e-19 Score=130.43 Aligned_cols=65 Identities=42% Similarity=0.619 Sum_probs=61.1
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
...++.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+.....
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 34578899999999999999999999999999999999999999999999999999999988764
No 5
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.3e-20 Score=132.72 Aligned_cols=63 Identities=48% Similarity=0.643 Sum_probs=59.3
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
...+|.||.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+...
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 345788999999999999999999999999999999999999999999999999999998754
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.3e-19 Score=131.74 Aligned_cols=66 Identities=33% Similarity=0.527 Sum_probs=62.0
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhccc
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGIL 199 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g~~ 199 (221)
..+|.||.|+..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..+....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 458889999999999999999999999999999999999999999999999999999999887543
No 7
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.77 E-value=7.2e-20 Score=129.26 Aligned_cols=63 Identities=63% Similarity=0.940 Sum_probs=59.9
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
++|.||.||..|+..||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 478899999999999999999999999999999999999999999999999999999987654
No 8
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=1.2e-19 Score=127.98 Aligned_cols=65 Identities=42% Similarity=0.662 Sum_probs=61.2
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhccc
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGIL 199 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g~~ 199 (221)
+++.|+.||..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+..+...+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 66 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAA 66 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhhh
Confidence 47889999999999999999999999999999999999999999999999999999998876543
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=1.2e-19 Score=126.07 Aligned_cols=60 Identities=60% Similarity=0.940 Sum_probs=56.4
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHh
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~ 194 (221)
.+|.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 478899999999999999999999999999999999999999999999999999999864
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=127.93 Aligned_cols=62 Identities=35% Similarity=0.544 Sum_probs=59.0
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
..+|.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 35788999999999999999999999999999999999999999999999999999998765
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=8.6e-20 Score=129.38 Aligned_cols=62 Identities=40% Similarity=0.684 Sum_probs=58.8
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
..++.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 45788999999999999999999999999999999999999999999999999999998664
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=8.1e-20 Score=126.50 Aligned_cols=59 Identities=42% Similarity=0.642 Sum_probs=53.1
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
.++.||.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 47889999999999999999999999999999999999999999999999999999985
No 13
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.8e-19 Score=122.94 Aligned_cols=57 Identities=54% Similarity=0.800 Sum_probs=55.3
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
++.|+.||..|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 477999999999999999999999999999999999999999999999999999987
No 14
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=2.4e-19 Score=126.50 Aligned_cols=63 Identities=40% Similarity=0.659 Sum_probs=60.1
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
.++.||.||..|+.+||..|..++||+..++..||..|+|++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 478899999999999999999999999999999999999999999999999999999988764
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.77 E-value=1.3e-19 Score=125.15 Aligned_cols=58 Identities=50% Similarity=0.826 Sum_probs=53.3
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
.+|.||.||..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999999999999999999999999999999999999987
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-19 Score=131.27 Aligned_cols=62 Identities=29% Similarity=0.393 Sum_probs=58.9
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
..+|.||.||.+|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 45888999999999999999999999999999999999999999999999999999998654
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.76 E-value=3.4e-19 Score=128.57 Aligned_cols=63 Identities=59% Similarity=0.832 Sum_probs=60.1
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..++.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..+.
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 457889999999999999999999999999999999999999999999999999999998875
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=9.5e-20 Score=128.94 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=59.5
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..++.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..+.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 457889999999999999999999999999999999999999999999999999999987653
No 19
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-19 Score=128.72 Aligned_cols=66 Identities=41% Similarity=0.583 Sum_probs=61.9
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhccc
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGIL 199 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g~~ 199 (221)
..++.|+.|+..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..+.+.+
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q~ 73 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQM 73 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 457889999999999999999999999999999999999999999999999999999998877654
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-19 Score=127.91 Aligned_cols=63 Identities=32% Similarity=0.459 Sum_probs=59.2
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..++.|+.|+..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+....
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 458889999999999999999999999999999999999999999999999999999986543
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.6e-19 Score=126.13 Aligned_cols=61 Identities=46% Similarity=0.721 Sum_probs=58.4
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
.++.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+...
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 4778999999999999999999999999999999999999999999999999999999765
No 22
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=1.2e-19 Score=127.90 Aligned_cols=63 Identities=41% Similarity=0.611 Sum_probs=60.3
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
.++.|+.||..|+.+||..|..++||+..++..||..|+|++.+|+|||||||+|+|+..+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 578899999999999999999999999999999999999999999999999999999988764
No 23
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=3e-19 Score=122.85 Aligned_cols=58 Identities=52% Similarity=0.832 Sum_probs=55.5
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
+|.||.||..|+..||..|..++||+..++.+||..|||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.75 E-value=4e-19 Score=127.08 Aligned_cols=63 Identities=44% Similarity=0.725 Sum_probs=59.6
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..++.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 458889999999999999999999999999999999999999999999999999999987654
No 25
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.75 E-value=3.4e-19 Score=131.65 Aligned_cols=61 Identities=64% Similarity=0.923 Sum_probs=55.7
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~ 194 (221)
..+|.||.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4588899999999999999999999999999999999999999999999999999999865
No 26
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-19 Score=130.39 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=59.4
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhC----CCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFN----KYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
...+|.||.||.+|+.+||.+|..+ +||+..++++||..|+|++.+|+|||||||+|+|+....
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 3458889999999999999999999 999999999999999999999999999999999986543
No 27
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-19 Score=125.68 Aligned_cols=63 Identities=37% Similarity=0.525 Sum_probs=59.7
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhcc
Q psy16800 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g~ 198 (221)
+|.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|+.....+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~q 64 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQ 64 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhcc
Confidence 688999999999999999999999999999999999999999999999999999999877643
No 28
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-19 Score=127.76 Aligned_cols=62 Identities=42% Similarity=0.611 Sum_probs=58.5
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
..++.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 45888999999999999999999999999999999999999999999999999999988654
No 29
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=5.4e-19 Score=128.61 Aligned_cols=63 Identities=35% Similarity=0.580 Sum_probs=59.3
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
...++.|+.|+..|+.+||..|..++||+..++..||..|+|++.+|+|||||||+|+|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 346888999999999999999999999999999999999999999999999999999999865
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=3.8e-19 Score=129.71 Aligned_cols=62 Identities=63% Similarity=0.945 Sum_probs=54.9
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
..+|.||.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 35788999999999999999999999999999999999999999999999999999998754
No 31
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=3.3e-19 Score=130.04 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=56.4
Q ss_pred CCCCCCcccCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHF----NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~----~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
..+|.||.||.+|+..||.+|+. ++||+..+|++||..|+|++.+|+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 46888999999999999999999 999999999999999999999999999999999875
No 32
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=8.6e-19 Score=131.08 Aligned_cols=64 Identities=45% Similarity=0.698 Sum_probs=60.7
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
..++.||.||..|+..||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+.....
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 3578899999999999999999999999999999999999999999999999999999988764
No 33
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=9e-19 Score=125.14 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCCcccCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 136 NSGRTNFTNKQLTELEKEFHF-NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~-~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
.+.|+.||..|+.+||..|.. ++||+..++.+||..|+|++.+|+|||||||+|+|+.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCC
Confidence 567999999999999999995 99999999999999999999999999999999999988653
No 34
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=2.5e-19 Score=125.51 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=57.5
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHh
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~ 194 (221)
.+|.||.||..|+..||..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 578899999999999999999999999999999999999999999999999999998764
No 35
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=7.2e-19 Score=125.25 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=58.1
Q ss_pred CCCCcccCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 136 NSGRTNFTNKQLTELEKEFHF-NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~-~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
.+.|+.|+..|+.+||..|.. ++||+..++.+||..|+|++.+|+|||||||+|+|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCC
Confidence 467899999999999999996 99999999999999999999999999999999999987553
No 36
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=7.9e-19 Score=130.70 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=58.4
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhccccCCCCC
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGILIGVGEG 205 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g~~~~~~~g 205 (221)
.||.+||.+||..|..++||+..+|.+||..|+|++.||+|||||||+|++++.+...+...+.+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~~~~~~~ 81 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAG 81 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCCCCCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhcccCCCC
Confidence 89999999999999999999999999999999999999999999999999988776554443333
No 37
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=5.7e-19 Score=119.99 Aligned_cols=57 Identities=49% Similarity=0.767 Sum_probs=54.7
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHH
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~K 191 (221)
+++.|+.|+..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 477899999999999999999999999999999999999999999999999999975
No 38
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=6.2e-19 Score=132.56 Aligned_cols=64 Identities=78% Similarity=1.130 Sum_probs=57.7
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
..++.||.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..+++
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~g 96 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 96 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhccC
Confidence 3578899999999999999999999999999999999999999999999999999999988764
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.74 E-value=4.6e-19 Score=121.92 Aligned_cols=58 Identities=41% Similarity=0.615 Sum_probs=50.7
Q ss_pred CCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 138 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 138 ~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
.|+.||..|+.+||..|..++||+..++.+||..|+|++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4799999999999999999999999999999999999999999999999999998764
No 40
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=5.1e-19 Score=129.15 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=55.0
Q ss_pred CCCCCCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHF-----NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
..+|.||.||.+|+..|| .|.. ++||+..+|++||..|+|++.+|+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 458889999999999999 7999 999999999999999999999999999999999875
No 41
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=129.49 Aligned_cols=65 Identities=29% Similarity=0.440 Sum_probs=61.6
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------CCCCceeeccccchhHHHHHhhhcc
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQ---------------LNETQVKIWFQNRRMKQKKRIKEGI 198 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~---------------Lt~~qVqvWFQNRRaK~Kr~~k~g~ 198 (221)
..+|.|+.|+..|+.+||..|..++||+..++++||..|+ |++.+|+|||||||+|+|++.+...
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~~ 85 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIAA 85 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhccC
Confidence 4588899999999999999999999999999999999999 9999999999999999999988743
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.73 E-value=1e-18 Score=118.76 Aligned_cols=54 Identities=44% Similarity=0.769 Sum_probs=51.2
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 140 TNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 140 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
|.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999986
No 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.2e-19 Score=126.90 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=59.0
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhccc
Q psy16800 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGIL 199 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g~~ 199 (221)
.+.|+.||..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+..+....
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~~ 72 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRSG 72 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCCC
Confidence 4458999999999999999999999999999999999999999999999999999997765433
No 44
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.7e-18 Score=125.26 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=56.9
Q ss_pred CCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 137 SGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 137 r~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
..|+.||.+|+.+|+..|..++||+..+|++||..+||++.||+|||||+|+|+|+....-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999999999999999876653
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=124.53 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=58.8
Q ss_pred CCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
.++.|+.||..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 36779999999999999999999999999999999999999999999999999999987665
No 46
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=124.52 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=57.2
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
.++|+.||..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|++.+.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 3457789999999999999999999999999999999999999999999999999998765
No 47
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.72 E-value=9.6e-19 Score=120.48 Aligned_cols=58 Identities=26% Similarity=0.474 Sum_probs=48.5
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~K 191 (221)
..++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|+|||||||+++|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4578899999999999999999999999999999999999999999999999999975
No 48
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.72 E-value=1.1e-18 Score=128.37 Aligned_cols=62 Identities=29% Similarity=0.431 Sum_probs=58.2
Q ss_pred CCCCcccCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 136 NSGRTNFTNKQLTELEKEF---HFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F---~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
+|.|+.|+..|+.+|+..| ..++||+..++.+||..|+|++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999987654
No 49
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=2.2e-18 Score=129.36 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=56.8
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
..+|.|+.||..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+...
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 34778999999999999999999999999999999999999999999999999999998654
No 50
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=128.16 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHh---------------------CCCCCceeeccccchhHHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVL---------------------QLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L---------------------~Lt~~qVqvWFQNRRaK~Kr 192 (221)
..+|.|+.|+..|+.+||..|+.++||+..+|++||..| .|++.+|+|||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 468889999999999999999999999999999999999 79999999999999999999
Q ss_pred HhhhccccCC
Q psy16800 193 RIKEGILIGV 202 (221)
Q Consensus 193 ~~k~g~~~~~ 202 (221)
+++.+.....
T Consensus 85 ~~~~~~~~~~ 94 (102)
T 2da6_A 85 RQKLAMDAYS 94 (102)
T ss_dssp HHHHHHSSSS
T ss_pred hhHhhhcccc
Confidence 9998766543
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=7.8e-18 Score=120.06 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=58.9
Q ss_pred CCCCCCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..++.|+.|+..|+.+|+..|.. ++||+..++++||..++|++.||+|||||+|+|+|+...+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 45788999999999999999987 9999999999999999999999999999999999987654
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=6e-18 Score=120.64 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=58.3
Q ss_pred CCCCcccCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 136 NSGRTNFTNKQLTELEKEF---HFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F---~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
+|.|+.|+..|+.+|+..| ..++||+..++..||..+||++.||+|||||+|+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999 899999999999999999999999999999999999987765
No 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=121.83 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=55.6
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhccc
Q psy16800 140 TNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGIL 199 (221)
Q Consensus 140 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g~~ 199 (221)
..||..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+..+....
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 349999999999999999999999999999999999999999999999999988776433
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=4e-18 Score=118.55 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=55.6
Q ss_pred CCCCCcccCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 135 NNSGRTNFTNKQLTELEKEF---HFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 135 ~rr~Rt~ft~~Ql~~Le~~F---~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
.++.|+.|+..|+.+|+..| ..++||+..++.+||..+||++.||++||||+|+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 47889999999999999999 89999999999999999999999999999999999876
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.68 E-value=1.4e-17 Score=114.35 Aligned_cols=56 Identities=30% Similarity=0.396 Sum_probs=53.6
Q ss_pred CCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 138 GRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 138 ~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
+|+.|+..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3689999999999999999 9999999999999999999999999999999999874
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.67 E-value=5.5e-17 Score=118.81 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=59.1
Q ss_pred CCCCCCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
..++.|+.|+..|+.+|+..|.. ++||+..++++||..++|++.||+|||||+|+|+++...+.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 35788999999999999999987 59999999999999999999999999999999999877653
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=4.4e-18 Score=121.73 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=55.1
Q ss_pred CCCCcccCHHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHh
Q psy16800 136 NSGRTNFTNKQLTELEKEF-HFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F-~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~ 194 (221)
.+.|..++..|+.+||..| ..++||+..++.+||..|+|++.||+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 5567788999999999999 9999999999999999999999999999999999999754
No 58
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.9e-17 Score=115.97 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=53.9
Q ss_pred CCCCCCcccCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCCCCceeeccccchhH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHF-NKYLTRARRIEIASVLQLNETQVKIWFQNRRMK 189 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~-~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK 189 (221)
..+|.||.|+.+||..|+.+|+. +.||+...|+.||.+|||++++|+|||||+|--
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 46899999999999999999999 999999999999999999999999999999975
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.66 E-value=1.5e-17 Score=136.31 Aligned_cols=63 Identities=27% Similarity=0.333 Sum_probs=53.0
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
+.+|.||.|+..|+.+||..|..++||+..+|.+||..|+|++.+|+|||||||+|+||..+.
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 457889999999999999999999999999999999999999999999999999999998765
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-17 Score=117.93 Aligned_cols=57 Identities=46% Similarity=0.771 Sum_probs=53.8
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 140 TNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 140 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..+|..|+..||..|..++||+..+|.+||..|+|++.+|+|||||||+|+|+....
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 468999999999999999999999999999999999999999999999999987654
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.65 E-value=1.4e-17 Score=126.13 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHH------------------hC---CCCCceeeccccchhHHH
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASV------------------LQ---LNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~------------------L~---Lt~~qVqvWFQNRRaK~K 191 (221)
.+.+|.|+.|+..|+.+||..|..++||+..+|++||.. |+ |++.+|+|||||||++++
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 346788999999999999999999999999999999999 88 999999999999999998
Q ss_pred HHhhhcccc
Q psy16800 192 KRIKEGILI 200 (221)
Q Consensus 192 r~~k~g~~~ 200 (221)
++++.+...
T Consensus 87 ~k~~~~~~~ 95 (99)
T 1lfb_A 87 FRHKLAMDT 95 (99)
T ss_dssp CCC------
T ss_pred Hhchhhhcc
Confidence 887765443
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=3.1e-17 Score=119.99 Aligned_cols=60 Identities=27% Similarity=0.320 Sum_probs=55.1
Q ss_pred CCCCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 136 NSGRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
++.|++|+..|+.+|+..|.. ++||+..++.+||..+||++.||+|||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 455777999999999999999 999999999999999999999999999999999998754
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.65 E-value=2.5e-17 Score=134.36 Aligned_cols=60 Identities=30% Similarity=0.432 Sum_probs=54.9
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
.++|.||.|+..|+.+||..|..++||+..+|.+||..|+|++.+|+|||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 458889999999999999999999999999999999999999999999999999999985
No 64
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=5.1e-17 Score=119.69 Aligned_cols=58 Identities=29% Similarity=0.377 Sum_probs=55.2
Q ss_pred CCCCCCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~K 191 (221)
.+++.|+.|+..|+.+|+..|.. ++||+..++..||..++|++.||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 35667999999999999999999 99999999999999999999999999999999987
No 65
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.65 E-value=2.4e-17 Score=132.63 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=55.7
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
.++|.||.|+..|+..||..|..++||+..++.+||..|+|++.+|+|||||||+|+||+
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 457889999999999999999999999999999999999999999999999999999985
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.65 E-value=4.1e-17 Score=114.80 Aligned_cols=53 Identities=23% Similarity=0.451 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHh
Q psy16800 142 FTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194 (221)
Q Consensus 142 ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~ 194 (221)
-|.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 67
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.63 E-value=7.1e-17 Score=130.32 Aligned_cols=59 Identities=31% Similarity=0.464 Sum_probs=56.7
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
+++|.|+.|+..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 45788999999999999999999999999999999999999999999999999999986
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-17 Score=113.50 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=50.6
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 139 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
+..++.+|+..||..|..++||+..+|.+||..|+|++.+|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 456679999999999999999999999999999999999999999999998765
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=6.4e-17 Score=113.38 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=46.5
Q ss_pred HHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 144 NKQLTELEKEF-HFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 144 ~~Ql~~Le~~F-~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
..|+.+||.+| ..++||+..+|.+||.+|+|+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45899999999 579999999999999999999999999999999998864
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.61 E-value=1.3e-16 Score=129.43 Aligned_cols=60 Identities=30% Similarity=0.405 Sum_probs=56.8
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
..+|.||.|+..|+..||..|..++||+..++.+||..|+|++.+|+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 357889999999999999999999999999999999999999999999999999999974
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.58 E-value=2.3e-16 Score=128.65 Aligned_cols=63 Identities=27% Similarity=0.289 Sum_probs=54.9
Q ss_pred CCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 134 LNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 134 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..+|.||.|+..|+..|+..|..++||+..++.+||..|+|++.+|+|||||||+|+|+....
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 458889999999999999999999999999999999999999999999999999998886554
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=2e-15 Score=106.26 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=50.6
Q ss_pred cccCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 140 TNFTNKQLTELEKEFH---FNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 140 t~ft~~Ql~~Le~~F~---~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..|+.+|+.+|+..|. .++||+..++.+||..++|++.||++||||+|+|+|+....
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3799999999999999 99999999999999999999999999999999999987654
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.44 E-value=8.6e-15 Score=123.04 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=53.7
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CCCCceeeccccchhHHH
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQ---------------------LNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~---------------------Lt~~qVqvWFQNRRaK~K 191 (221)
.+.||.|+.|+..|+..|+..|..++||+..+|++||..|+ |++.+|+|||||||++++
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 35688899999999999999999999999999999999999 999999999999999876
Q ss_pred H
Q psy16800 192 K 192 (221)
Q Consensus 192 r 192 (221)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=6.1e-14 Score=99.45 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhH
Q psy16800 144 NKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMK 189 (221)
Q Consensus 144 ~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK 189 (221)
++|+.+|+.+|..|++|+..++..||..++|+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=99.24 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=53.5
Q ss_pred cccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhhc
Q psy16800 140 TNFTNKQLTELEKEFHF---NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 140 t~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~g 197 (221)
..|+..++.+|+..|.. ++||+..++.+||..++|++.||++||||+|+|+++.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46889999999999987 89999999999999999999999999999999999877653
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.34 E-value=2.4e-13 Score=116.03 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=53.2
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CCCCceeeccccchhHH
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQ---------------------LNETQVKIWFQNRRMKQ 190 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~---------------------Lt~~qVqvWFQNRRaK~ 190 (221)
.+.||.|+.|+..|+.+|+..|..++||+..+|++||..|+ |++.+|++||||||++.
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 45688999999999999999999999999999999999988 89999999999999863
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.25 E-value=9e-13 Score=118.58 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=52.9
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHH
Q psy16800 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~K 191 (221)
++.++.|+..|+..|++.|+.++||+..+|++||.+|+|+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44578999999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.69 E-value=4.4e-09 Score=65.69 Aligned_cols=21 Identities=67% Similarity=1.056 Sum_probs=19.1
Q ss_pred CceeeccccchhHHHHHhhhc
Q psy16800 177 TQVKIWFQNRRMKQKKRIKEG 197 (221)
Q Consensus 177 ~qVqvWFQNRRaK~Kr~~k~g 197 (221)
+||+|||||||+|||+.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999999874
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.49 E-value=0.011 Score=41.41 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=36.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccc
Q psy16800 147 LTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQ 184 (221)
Q Consensus 147 l~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQ 184 (221)
.+.|+.+|...+.+.......|+.+..|+..||+-||-
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999994
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=64.13 E-value=4.9 Score=29.56 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=38.2
Q ss_pred CCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhH
Q psy16800 138 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMK 189 (221)
Q Consensus 138 ~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK 189 (221)
+|..||.++...+-..+..+..... .+||..+|++...|..|..++..-
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 5788999999888877755555443 368999999999999998776553
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=61.19 E-value=3 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=31.9
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeecccc
Q psy16800 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQN 185 (221)
Q Consensus 139 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQN 185 (221)
|..|+.++...+..++... ........++|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4578888877775555433 221122568999999999999999753
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=57.80 E-value=5.3 Score=27.87 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
.++..|..+|.-.|.... .-.++|..||++...|+.+...-+.+.++....
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776553322 356889999999999999998888887776554
No 83
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=54.70 E-value=4.7 Score=26.72 Aligned_cols=19 Identities=68% Similarity=0.879 Sum_probs=15.3
Q ss_pred CCCccccchhHHHHHhhhh
Q psy16800 23 GVGGEVGKVGEEMKEKEEE 41 (221)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (221)
|+||+|-+|.++.|.-|+|
T Consensus 45 ggggevkkveeevkkleee 63 (67)
T 1lq7_A 45 GGGGEVKKVEEEVKKLEEE 63 (67)
T ss_dssp TSSSTHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHH
Confidence 5688999999998876654
No 84
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=53.70 E-value=0.29 Score=38.79 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=21.5
Q ss_pred CCCCCCCcccCHHHHHHHHHHhhhCCCCCH
Q psy16800 133 LLNNSGRTNFTNKQLTELEKEFHFNKYLTR 162 (221)
Q Consensus 133 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~ 162 (221)
...+|.||.|+..|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 345888999999999999999999999864
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=53.52 E-value=3.3 Score=24.88 Aligned_cols=43 Identities=7% Similarity=0.224 Sum_probs=28.9
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRM 188 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRa 188 (221)
.++.++...+...+... . ...+||..++++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35555655555555533 2 2457899999999999999975443
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=53.10 E-value=9.4 Score=26.47 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=32.0
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccc
Q psy16800 136 NSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQ 184 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQ 184 (221)
++.+..|+.++...+...+... . ...+||..++++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 4456789998866555556432 2 255789999999999999974
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.82 E-value=3.5 Score=26.74 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=35.4
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
.++..+..+|...|... ..-.++|..+|++...|+.|...-+.+.++...
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888766433 124688999999999999988766666665443
No 88
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.55 E-value=8.4 Score=22.47 Aligned_cols=40 Identities=8% Similarity=0.240 Sum_probs=28.2
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeecccc
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQN 185 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQN 185 (221)
.++..+...+...+... + ...++|..++++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 56777765555555433 2 2557899999999999998753
No 89
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=48.40 E-value=8 Score=21.23 Aligned_cols=13 Identities=62% Similarity=0.943 Sum_probs=10.7
Q ss_pred CCCCCccCCCCCC
Q psy16800 12 SRSRKDDENKGGV 24 (221)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (221)
||.|..|||.||.
T Consensus 4 srrrhsdendggq 16 (26)
T 3ul0_C 4 SRRRHSDENDGGQ 16 (26)
T ss_dssp CCCCCTTSCSSCC
T ss_pred cccccccccCCCC
Confidence 6778889999875
No 90
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=44.37 E-value=4.9 Score=28.47 Aligned_cols=51 Identities=20% Similarity=0.085 Sum_probs=37.5
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 140 TNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 140 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
..++..+..+|.-++.-.. ..++|..|+++...|+.+..+-+.|.+.....
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 3588999999988643322 36889999999999999887766666554443
No 91
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.56 E-value=13 Score=27.32 Aligned_cols=50 Identities=28% Similarity=0.220 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhhh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k~ 196 (221)
.++..+..+|. .|-. . ..-.++|..||++...|+.+...-+.+.|+....
T Consensus 109 ~L~~~~r~v~~-~~~~-g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-G----YSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HSCHHHHHHHH-HHTT-T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-C----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777 3322 2 2356899999999999999998777777766543
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=40.00 E-value=10 Score=27.28 Aligned_cols=47 Identities=17% Similarity=-0.022 Sum_probs=35.8
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHH
Q psy16800 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 139 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~K 191 (221)
...++..+..+|.-.+.-.. -.++|..|++++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45789999999977654322 368999999999999998876555543
No 93
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=39.31 E-value=12 Score=24.35 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=36.5
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~ 194 (221)
.++..+..+|...|..+.+- ...-.++|..++++...|+.+...-+.+.+...
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887321111 122467899999999999998876666655443
No 94
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=38.81 E-value=11 Score=24.57 Aligned_cols=18 Identities=50% Similarity=0.693 Sum_probs=10.0
Q ss_pred CCCCCccccchhHHHHHh
Q psy16800 21 KGGVGGEVGKVGEEMKEK 38 (221)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~ 38 (221)
.||+||+.-++-++.+.+
T Consensus 30 ggggggelmklceeaakk 47 (62)
T 2i7u_A 30 GGGGGGELMKLCEEAAKK 47 (62)
T ss_dssp SCSSSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 455666666665554443
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.13 E-value=12 Score=25.56 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=35.6
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHH
Q psy16800 140 TNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193 (221)
Q Consensus 140 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~ 193 (221)
..++..+..+|.-++.- ..-.++|..++++...|+.+..+-+.|.+..
T Consensus 20 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46889999998885322 2356889999999999998887666655443
No 96
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=37.85 E-value=25 Score=26.69 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=36.7
Q ss_pred CCCCcccCHHHHHHHHHHh-hhCCCCCHHHHHHHH-HHh--CCCCCceeecccc
Q psy16800 136 NSGRTNFTNKQLTELEKEF-HFNKYLTRARRIEIA-SVL--QLNETQVKIWFQN 185 (221)
Q Consensus 136 rr~Rt~ft~~Ql~~Le~~F-~~~~yps~~~r~~LA-~~L--~Lt~~qVqvWFQN 185 (221)
++.|.++|.+|...|..++ +.++-.+..+....| .++ +++...|.-|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5679999999999999999 666666554433322 267 7788888888754
No 97
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=37.63 E-value=6.2 Score=31.35 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhH
Q psy16800 147 LTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMK 189 (221)
Q Consensus 147 l~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK 189 (221)
+......|....|-... ...||...|++...|-.+|.|+-.-
T Consensus 50 l~aA~~lf~e~G~~~~t-~~~IA~~aGvs~~tlY~~F~sK~~L 91 (236)
T 3q0w_A 50 LATAENLLEDRPLADIS-VDDLAKGAGISRPTFYFYFPSKEAV 91 (236)
T ss_dssp HHHHHHHHHHSCGGGCC-HHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCcHHHHHHHCCCHHHH
Confidence 55666678888764433 5578999999999999999998753
No 98
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=35.64 E-value=16 Score=23.63 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=34.5
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHH
Q psy16800 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 139 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~K 191 (221)
-..++..+..+|..++. .+ ...++|..++++...|..+...-+.+.+
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 34688899999988532 22 3458899999999999988876555544
No 99
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=35.15 E-value=21 Score=24.82 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=29.6
Q ss_pred CcccCHHHHHHHHHHhhhC-CCCCHHHHHHHHHHhCCCCCceeeccc
Q psy16800 139 RTNFTNKQLTELEKEFHFN-KYLTRARRIEIASVLQLNETQVKIWFQ 184 (221)
Q Consensus 139 Rt~ft~~Ql~~Le~~F~~~-~yps~~~r~~LA~~L~Lt~~qVqvWFQ 184 (221)
|..|+.++....-..+... .+ ...++|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3568888776655555332 22 256889999999999999964
No 100
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=33.50 E-value=13 Score=24.49 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=33.2
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
.++..+..+|.-++. .+ ...++|..++++...|+.+..+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 467788888877432 22 24589999999999999888766665554
No 101
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=32.85 E-value=24 Score=25.91 Aligned_cols=50 Identities=16% Similarity=0.057 Sum_probs=38.3
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
.+++.|..+|.-.|.... .-.++|..+|++...|+.|...-+.+.++...
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 577888888887755432 24688999999999999999887777665543
No 102
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.22 E-value=14 Score=29.15 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
.++..+..+|.-.|-.. ....++|..||++...|+.+...-+.+.|+...
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46777777887766432 235688999999999999999877777776544
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.75 E-value=26 Score=23.02 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHH
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~K 191 (221)
.++..+..+|...|-.... ....-.++|..++++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788888888888752100 0112458899999999999998876666655
No 104
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.73 E-value=91 Score=23.14 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=32.2
Q ss_pred CCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCCCC
Q psy16800 138 GRTNFTNKQLTELEKEFHF-----NKYLTRARRIEIASVLQLNET 177 (221)
Q Consensus 138 ~Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~L~Lt~~ 177 (221)
+|..+|.+|+..|...|.. +.+.+..+...+...|++...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3567999999999999964 458899998888888886553
No 105
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=28.58 E-value=49 Score=23.23 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=36.3
Q ss_pred CCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCC--CCCceeeccc
Q psy16800 138 GRTNFTNKQLTELEKEFHF-----NKYLTRARRIEIASVLQL--NETQVKIWFQ 184 (221)
Q Consensus 138 ~Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~L~L--t~~qVqvWFQ 184 (221)
....++.+|+..|...|.. +.+.+..+...+...+|+ +...|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3467899999999999864 458999999998888874 5666666663
No 106
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=28.31 E-value=9.5 Score=30.14 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=31.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchh
Q psy16800 147 LTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRM 188 (221)
Q Consensus 147 l~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRa 188 (221)
+......|....|-... ..+||...|++...|-.+|.|+-.
T Consensus 49 l~aA~~l~~~~G~~~~t-v~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 49 LDACADLLDEVGYDALS-TRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcChhhcc-HHHHHHHHCCCchhHHHHcCCHHH
Confidence 44555668877765444 567899999999999999999865
No 107
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.79 E-value=14 Score=25.58 Aligned_cols=47 Identities=21% Similarity=0.078 Sum_probs=34.5
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 140 TNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 140 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
..++..+..+|.-++.-.. -.++|..|+++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGYS------NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHTTCC------TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4688889999887543222 3478999999999999988766655443
No 108
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.23 E-value=33 Score=25.00 Aligned_cols=50 Identities=22% Similarity=0.062 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
.++..+..+|.-.|.... .-.++|..+|++...|+.+...-|.+.++...
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776654332 34688999999999999999877777766543
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=25.78 E-value=38 Score=23.83 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=30.7
Q ss_pred CcccCHHHHHHHHHHhhhC--CCCC-HHHHHHHHHHhCCCCCceeeccc
Q psy16800 139 RTNFTNKQLTELEKEFHFN--KYLT-RARRIEIASVLQLNETQVKIWFQ 184 (221)
Q Consensus 139 Rt~ft~~Ql~~Le~~F~~~--~yps-~~~r~~LA~~L~Lt~~qVqvWFQ 184 (221)
+..|+.++....-..+... .+.+ .....++|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3468888776554444322 1222 24567899999999999998863
No 110
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.38 E-value=29 Score=21.26 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=27.0
Q ss_pred ccC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccc
Q psy16800 141 NFT--NKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQ 184 (221)
Q Consensus 141 ~ft--~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQ 184 (221)
.++ ..+...+...+... + ...++|..++++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 455 56666665555433 2 355789999999999988874
No 111
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=24.12 E-value=36 Score=25.87 Aligned_cols=23 Identities=13% Similarity=0.443 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCCceeeccccch
Q psy16800 165 RIEIASVLQLNETQVKIWFQNRR 187 (221)
Q Consensus 165 r~~LA~~L~Lt~~qVqvWFQNRR 187 (221)
...+|..+|+...+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999996554
No 112
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=23.84 E-value=31 Score=26.45 Aligned_cols=45 Identities=4% Similarity=-0.086 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHH
Q psy16800 146 QLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191 (221)
Q Consensus 146 Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~K 191 (221)
-+......|....|-... ...||...|++...|-.+|.|+-.-..
T Consensus 33 Il~aa~~lf~~~G~~~~t-v~~IA~~agvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 33 LVNAAIEVLAREGARGLT-FRAVDVEANVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHHTCTTTCC-HHHHHHHSSSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHhChhhcc-HHHHHHHcCCCcchHHHhCCCHHHHHH
Confidence 355666778888875443 568899999999999999999876444
No 113
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=23.16 E-value=38 Score=23.62 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=33.4
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHH
Q psy16800 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQ 190 (221)
Q Consensus 139 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~ 190 (221)
...+|..+..+|.-.++-. ...++|..|++++..|+....+-+.|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4578999999998776222 356889999999999988776554443
No 114
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.02 E-value=29 Score=23.72 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=34.8
Q ss_pred ccCHHHHHHHHHHhhhC--CCCCHHHHHHHHHHhCCCCCceeeccccchhHHHH
Q psy16800 141 NFTNKQLTELEKEFHFN--KYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~--~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr 192 (221)
.++..+..+|...|-.. .-. .-.++|..+|++...|+.|...-+.+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46778888888877421 112 24578999999999999988766655554
No 115
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.85 E-value=20 Score=27.10 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=33.8
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHhh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~k 195 (221)
.++..|..+|.-.| .....-.++|..||+++..|+.+...-|.+.|+...
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 45566666664332 222345689999999999999999866666665443
No 116
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.48 E-value=37 Score=25.81 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=34.7
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCCCceeeccccchhHHHHHh
Q psy16800 141 NFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRI 194 (221)
Q Consensus 141 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~L~Lt~~qVqvWFQNRRaK~Kr~~ 194 (221)
.++..+..+|.-.|-.. ..-.++|..||++...|+.+...-|.+.|+..
T Consensus 140 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 35666666666554322 12468899999999999999987777766654
Done!