RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16800
(221 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 89.1 bits (221), Expect = 3e-24
Identities = 38/54 (70%), Positives = 41/54 (75%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
R +T Q ELEKEFHFN+YLTR RRIEIA L L E Q+KIWFQNRRMK KK
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 87.5 bits (217), Expect = 1e-23
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196
RT+FT +Q+ LEKEF Y R +A+ + L E ++++WF NRR K ++ K
Sbjct: 5 RTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 88.0 bits (218), Expect = 1e-23
Identities = 37/58 (63%), Positives = 41/58 (70%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196
R +T Q ELEKEF FN YLTR RR E+A +L L E QVKIWFQNRRMK KK K+
Sbjct: 17 RCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 84.9 bits (210), Expect = 1e-22
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 138 GRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
G+ F+N Q ELEK+F KYL+ R +A +LQL+E QVK WFQNRR K ++
Sbjct: 3 GQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 83.1 bits (205), Expect = 1e-21
Identities = 52/75 (69%), Positives = 61/75 (81%)
Query: 122 PPPAALSQHQSLLNNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKI 181
P A +S+ + RTNFT +QLTELEKEFHFNKYL+RARR+EIA+ L+LNETQVKI
Sbjct: 14 PKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 73
Query: 182 WFQNRRMKQKKRIKE 196
WFQNRRMKQKKR +E
Sbjct: 74 WFQNRRMKQKKRERE 88
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 79.9 bits (197), Expect = 8e-21
Identities = 25/54 (46%), Positives = 40/54 (74%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
R ++ QL ELE+E+ NK++T+ +R +I++ L+E Q+ IWFQNRR+K+KK
Sbjct: 5 RIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 79.5 bits (196), Expect = 1e-20
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMK 189
RT F+++QL L++EF+ N+YLT RR +++S L LNE Q+KIWFQN R K
Sbjct: 3 RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 79.9 bits (197), Expect = 1e-20
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
RT KQL L + N + ++ + L+ +++WFQN+R K KKR
Sbjct: 7 RTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 78.8 bits (194), Expect = 2e-20
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
RT FT QL LEKEF+ Y++R RR E+A+ L L E+ +K+WFQNRRMK K++
Sbjct: 3 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 77.7 bits (191), Expect = 7e-20
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
RT+FT++QL +LE F N+Y + R EIA L E +V++WF+NRR K +KR
Sbjct: 5 RTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 77.2 bits (190), Expect = 8e-20
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191
+++ + + LE+ F + L + E+A + QV++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 77.3 bits (190), Expect = 1e-19
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
RT FT QL LE++F +YL+ A R E +S L L ETQVKIWFQNRR K K+
Sbjct: 4 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 76.9 bits (189), Expect = 1e-19
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
RT F+ QL ELE+ F +Y R E+A L E ++++WFQNRR + +K+
Sbjct: 6 RTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 76.6 bits (188), Expect = 3e-19
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIA---------------SVLQLNETQVKIWF 183
R + + L +E F+ N+Y A+R EIA + ++ +V WF
Sbjct: 4 RFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWF 63
Query: 184 QNRRMKQKKR 193
NRR + K+R
Sbjct: 64 ANRRKEIKRR 73
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 76.1 bits (187), Expect = 3e-19
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196
R F+ Q+ ELE+ F KYL+ R +AS++ L TQVKIWFQN R K K++ K+
Sbjct: 6 RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 75.7 bits (186), Expect = 3e-19
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
RT + LE+ F + + + +A L L + V++WF NRR ++K+
Sbjct: 3 RTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 75.7 bits (186), Expect = 4e-19
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196
RT FT+ Q+ ELE+ F +YLT R ++++ L L QVKIWF+NRR + K + +
Sbjct: 5 RTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 62
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 75.3 bits (185), Expect = 5e-19
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRR 187
R FT+ Q L F NK ++ +I I+ L L + V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 73.6 bits (181), Expect = 2e-18
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 143 TNKQLTELEKEF-HFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
T + LEK F K+ R ++ L + ++ WF+ RR ++K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 71.3 bits (175), Expect = 2e-17
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 139 RTNFTNKQLTELEKEF---HFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
R + + Y T + +IA+ L QV WF N R + +
Sbjct: 6 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 71.0 bits (174), Expect = 3e-17
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 139 RTNFTNKQLTELEKEFHFNK---YLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
FT + + LE F N YL + L+ Q+K W NRR K+K
Sbjct: 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 71.2 bits (174), Expect = 3e-17
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKE 196
R FT Q ELE+ F +YL+ R +AS+++L TQVKIWFQN R K K+ E
Sbjct: 13 RVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 70.4 bits (172), Expect = 5e-17
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
RT+ N+ LE F + + IA+ L L + V++WF NRR K K+
Sbjct: 12 RTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 70.4 bits (172), Expect = 6e-17
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 139 RTNFTNKQLTELEK---EFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIK 195
R NF + L + N Y + + E+A + +QV WF N+R++ KK I
Sbjct: 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64
Query: 196 E 196
+
Sbjct: 65 K 65
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 70.0 bits (171), Expect = 7e-17
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKK 192
RT+ LEK F N+ T IA L + + +++WF NRR K+K+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 67.3 bits (164), Expect = 8e-16
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 138 GRTNFTNKQLTELEKEFHF-NKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
G T Q+ LE F+ NK+ IA+ L E Q + WF+ R + ++
Sbjct: 4 GAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 66.7 bits (163), Expect = 1e-15
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 139 RTNFTNKQLTELEKEF-HFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQK 191
+ LEK F KY R ++ L + +++ WF++RR + K
Sbjct: 5 SPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 64.0 bits (155), Expect = 2e-14
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKRIKEGI 198
T +QL L+ F + LT + + +L ++ WF ++ + + ++
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 67
Query: 199 LIGVGEGS 206
+ GS
Sbjct: 68 IDESNAGS 75
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 63.6 bits (154), Expect = 2e-14
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 139 RTNFTNKQLTELEKEFH-FNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
RT + + L L+ H Y + +++ L L + + +FQN+R K
Sbjct: 11 RTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 62.5 bits (151), Expect = 6e-14
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 139 RTNFTNKQLTELEKEFHFNKYLTRARRIEIASVL---------------------QLNET 177
R + L + + K ++ R + + E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 178 QVKIWFQNRRMKQKKRIK 195
+V WF NRR ++ R K
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 54.4 bits (130), Expect = 7e-11
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 135 NNSGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
+ S T +QL L+ F ++ R ++ + L ++ WF + R K
Sbjct: 3 SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 52.3 bits (125), Expect = 4e-10
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 139 RTNFTNKQLTELEKEFH----FNKYLTRARRIEIASVLQLNETQVKIWFQNRRMKQKKR 193
RT FT +Q ++ + + + + +KIW N +
Sbjct: 21 RTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79
>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 476
Score = 25.1 bits (54), Expect = 8.0
Identities = 9/78 (11%), Positives = 16/78 (20%), Gaps = 2/78 (2%)
Query: 68 CVFSLSSLRDLFPVKGEIGVTKVQIPSELSPLGVHPHPTSPSTDYTTPLTALKYPPPA-- 125
C F + + D F + + T +Y
Sbjct: 324 CAFPIKYVNDFFNKIVNKNNVRCLQHFYGPNHEHCFNRTLLRNSSGCEARRDEYRTEFTT 383
Query: 126 ALSQHQSLLNNSGRTNFT 143
AL + + T
Sbjct: 384 ALQRVDLFMGQFSEVLLT 401
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.134 0.379
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 793,854
Number of extensions: 36552
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 35
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)