BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16807
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1
Length = 728
Score = 38.1 bits (87), Expect = 0.043, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 49 ENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPW 108
E N VD+ SN +T T D R V + ++ V + YR VF +LE +
Sbjct: 390 EANNVDQVTVCSNTTRSTTSKTVPDLRRVPQTMRSAVIGLSP-YR-VFSLEELEEATNNF 447
Query: 109 RENQLTGQKLKK----------IKCDTRKWKSSTRDVRAEEIVVCRLR-------IGHCL 151
L G++L K ++C K K+ST+++ + V+ +LR +GHC+
Sbjct: 448 DAENLCGEQLYKGCLREGIAVTVRCIKLKQKNSTQNLAQQMEVLSKLRHMHLVSVLGHCI 507
Query: 152 ATHQ 155
T+Q
Sbjct: 508 GTYQ 511
>sp|A4XNY5|ARLY_PSEMY Argininosuccinate lyase OS=Pseudomonas mendocina (strain ymp)
GN=argH PE=3 SV=1
Length = 464
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 72 DDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKL-------KKIKCD 124
D K++Q E+ A D+R + V + + A+ +TG+KL ++ D
Sbjct: 62 DAIEGGLKQIQGEIEAGQFDWRVDLEDVHMNIEARLTDRIGVTGKKLHTGRSRNDQVATD 121
Query: 125 TRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLL 181
R W DV EI RL+ G L + + P HL P+T H LL
Sbjct: 122 IRLWLRDEIDVILAEI--TRLQQG-LLGLAEAEADTIMPGFTHLQTAQPVTFGHHLL 175
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 34.7 bits (78), Expect = 0.48, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 35 VVSFLWIPSHVGIRENNLVDEAARNSNEAPLS 66
+V F W+P H GI N L DEAA+ E L+
Sbjct: 712 IVYFAWVPGHKGIYGNQLADEAAKIKEEIMLA 743
>sp|C1DJ48|ARLY_AZOVD Argininosuccinate lyase OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=argH PE=3 SV=1
Length = 464
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 78 FKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKL-------KKIKCDTRKWKS 130
K++Q E+ A D+R + V + + A+ +TG+KL ++ D R W
Sbjct: 68 LKQIQSEIEAGQFDWRVDLEDVHMNIEARLTERIGITGKKLHTGRSRNDQVATDIRLWLR 127
Query: 131 STRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLL 181
D EI RL+ G L + E P HL P+T H LL
Sbjct: 128 DEIDTILGEI--TRLQQG-LLEQAERHAEVIMPGFTHLQTAQPVTFGHHLL 175
>sp|A4VGX6|ARLY_PSEU5 Argininosuccinate lyase OS=Pseudomonas stutzeri (strain A1501)
GN=argH PE=3 SV=1
Length = 464
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
Query: 62 EAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKL--- 118
+A + T D A K +Q E+ A D+R + V + + A+ + G+KL
Sbjct: 52 KAGVLTDAERDQIIANLKDIQSEIEAGTFDWRVDLEDVHMNIEARLTDRIGIVGKKLHTG 111
Query: 119 ----KKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPI 174
++ D R W DV EI RL+ G L + + P HL P+
Sbjct: 112 RSRNDQVATDIRLWLRDEIDVILGEI--TRLQQG-LLGLAEAEADTIMPGFTHLQTAQPV 168
Query: 175 TIKHWLL 181
T H LL
Sbjct: 169 TFGHHLL 175
>sp|O94806|KPCD3_HUMAN Serine/threonine-protein kinase D3 OS=Homo sapiens GN=PRKD3 PE=1
SV=1
Length = 890
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 94 AVFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLAT 153
+V + +Q E A P E+ + + K+I W S R + E++V+CR+++ H A
Sbjct: 223 SVPRPLQPEYVALPSEESHVHQEPSKRIP----SW--SGRPIWMEKMVMCRVKVPHTFAV 276
Query: 154 HQYLLERQNPPACHLC 169
H Y P C C
Sbjct: 277 HSY----TRPTICQYC 288
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 33.9 bits (76), Expect = 0.81, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 35 VVSFLWIPSHVGIRENNLVDEAARNSNEAPLS 66
+V F W+P H GI N L DEAA+ E L+
Sbjct: 713 IVYFAWVPGHKGICGNQLADEAAKIKEEIMLA 744
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 33.9 bits (76), Expect = 0.82, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 35 VVSFLWIPSHVGIRENNLVDEAARNSNEAPLS 66
+V F W+P H GI N L DEAA+ E L+
Sbjct: 713 IVYFAWVPGHKGICGNQLADEAAKIKEEIMLA 744
>sp|C3LPN8|RNH_VIBCM Ribonuclease H OS=Vibrio cholerae serotype O1 (strain M66-2)
GN=rnhA PE=3 SV=1
Length = 156
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 4 NYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEA 63
N+ L A +K + ++ L ++ V + W+ H G REN + DE AR + E
Sbjct: 84 NWKLRGWKTADKKPVKNADLWQALDKETARHQVEWRWVKGHAGHRENEMCDELARQAAEN 143
Query: 64 PLSTICTADD 73
P T DD
Sbjct: 144 P-----TEDD 148
>sp|Q9KPX8|RNH_VIBCH Ribonuclease HI OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=rnhA PE=3 SV=1
Length = 156
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 4 NYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEA 63
N+ L A +K + ++ L ++ V + W+ H G REN + DE AR + E
Sbjct: 84 NWKLRGWKTADKKPVKNADLWQALDKETARHQVEWRWVKGHAGHRENEMCDELARQAAEN 143
Query: 64 PLSTICTADD 73
P T DD
Sbjct: 144 P-----TEDD 148
>sp|A5F633|RNH_VIBC3 Ribonuclease H OS=Vibrio cholerae serotype O1 (strain ATCC 39541 /
Ogawa 395 / O395) GN=rnhA PE=3 SV=1
Length = 156
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 4 NYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEA 63
N+ L A +K + ++ L ++ V + W+ H G REN + DE AR + E
Sbjct: 84 NWKLRGWKTADKKPVKNADLWQALDKETARHQVEWRWVKGHAGHRENEMCDELARQAAEN 143
Query: 64 PLSTICTADD 73
P T DD
Sbjct: 144 P-----TEDD 148
>sp|B2WB15|RTC5_PYRTR Restriction of telomere capping protein 5 OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=rtc5 PE=3 SV=1
Length = 624
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 14 SPTELKCLNCFRYLLSDS-----YW---TVVSFLWIPSHVGIRENNLVDEAARNSNEAPL 65
+P EL C NC L+D+ YW T+ FL +P +G+ +++ + A PL
Sbjct: 29 TPLELYCFNCVFRSLADTESGVHYWSETTLCRFLELPDALGV--GSVIFQMASYLGAFPL 86
Query: 66 STICTAD-DYRAVFKKLQLEVWAFADDYRAVFKKVQLEVW 104
+ A Y A+ K + + + Y AV KK E+W
Sbjct: 87 PSQAPAILTYEALLKVVTI----LTERYGAVVKKRGREIW 122
>sp|A7MY21|RNH_VIBHB Ribonuclease H OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
GN=rnhA PE=3 SV=1
Length = 154
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 36 VSFLWIPSHVGIRENNLVDEAARNSNEAP 64
V + W+ H G REN + DE AR + E P
Sbjct: 116 VDWHWVKGHAGHRENEICDELARTAAENP 144
>sp|Q87MG2|RNH_VIBPA Ribonuclease HI OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnhA PE=3 SV=1
Length = 154
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 36 VSFLWIPSHVGIRENNLVDEAARNSNEAP 64
V + W+ H G REN + DE AR + E P
Sbjct: 116 VDWHWVKGHAGHRENEICDELARTAAENP 144
>sp|Q5E3G5|RNH_VIBF1 Ribonuclease H OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=rnhA PE=3 SV=1
Length = 157
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 22 NCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAP 64
+ ++ L ++S + + W+ H G REN + DE AR + E P
Sbjct: 106 DLWKQLDAESERHKIDWRWVKGHAGHRENEMCDELARTAAENP 148
>sp|Q7MII6|RNH_VIBVY Ribonuclease H OS=Vibrio vulnificus (strain YJ016) GN=rnhA PE=3
SV=1
Length = 155
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 13 ASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAP 64
A +K + ++ L ++ + + W+ H G REN + DE AR + E P
Sbjct: 93 ADKKPVKNADLWQALDKETTRHTIDWRWVKGHAGHRENEMCDELARAAAENP 144
>sp|Q8DBD5|RNH_VIBVU Ribonuclease HI OS=Vibrio vulnificus (strain CMCP6) GN=rnhA PE=3
SV=1
Length = 155
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 13 ASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAP 64
A +K + ++ L ++ + + W+ H G REN + DE AR + E P
Sbjct: 93 ADKKPVKNADLWQALDKETTRHTIDWRWVKGHAGHRENEMCDELARAAAENP 144
>sp|B7VIP1|RNH_VIBSL Ribonuclease H OS=Vibrio splendidus (strain LGP32) GN=rnhA PE=3
SV=1
Length = 154
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 36 VSFLWIPSHVGIRENNLVDEAARNSNEAP 64
V + W+ H G REN + D+ AR++ E P
Sbjct: 116 VDWRWVKGHAGHRENEMCDDLARSAAENP 144
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 125 TRKWKSSTRDVRAEEIVVCRLRIGHCLATHQ----YLLER--QNPPACHLCNEVPITIKH 178
T ++ S R VR E + L +G+ L H +L +R N P C +C +KH
Sbjct: 883 THEFIPSVRFVRENEWMAFGLCLGYVLTGHGSMNGFLHKRGLSNTPVC-MCGAPNEDVKH 941
Query: 179 WLLECPRLNALR 190
L ECP LR
Sbjct: 942 LLGECPLYEDLR 953
>sp|G5EBU4|ZAG1_CAEEL Zinc finger E-box-binding homebox protein zag-1 OS=Caenorhabditis
elegans GN=zag-1 PE=2 SV=1
Length = 596
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 150 CLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLK 200
LA H+Y Q P C +C E KH L E RL++ + F+ CLK
Sbjct: 495 SLARHKYEHSGQRPYKCDIC-EKAFKHKHHLTEHKRLHSGEKPFQCDKCLK 544
>sp|B6EJV2|RNH_ALISL Ribonuclease H OS=Aliivibrio salmonicida (strain LFI1238) GN=rnhA
PE=3 SV=1
Length = 157
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 35 VVSFLWIPSHVGIRENNLVDEAARNSNEAP 64
V + W+ H G REN + D+ AR + E P
Sbjct: 119 TVDWRWVKGHAGHRENEMCDDLARTAAENP 148
>sp|Q02KH5|MTNC_PSEAB Enolase-phosphatase E1 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=mtnC PE=3 SV=1
Length = 225
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 66 STICTADDYRAVFKKLQLEVWAFADDYRAV-FKKVQLEVWAKPWRENQLTGQKLKKIKCD 124
S AD RA+ LQ W A+D +A K +Q VWA+ +R+ QL G
Sbjct: 56 SGEADADVERAIAILLQ---W-IAEDRKATPLKALQGMVWAQGYRDGQLKGHVYPDAVQA 111
Query: 125 TRKWKSSTRDV 135
R+WK+ D+
Sbjct: 112 LREWKARGLDL 122
>sp|A5UFU3|RNH_HAEIG Ribonuclease H OS=Haemophilus influenzae (strain PittGG) GN=rnhA
PE=3 SV=1
Length = 154
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 36 VSFLWIPSHVGIRENNLVDEAARNSNEAP 64
+++ W+ H G REN + DE A+ E P
Sbjct: 116 INWQWVKGHAGHRENEICDELAKKGAENP 144
>sp|Q4QP49|RNH_HAEI8 Ribonuclease H OS=Haemophilus influenzae (strain 86-028NP) GN=rnhA
PE=3 SV=1
Length = 154
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 36 VSFLWIPSHVGIRENNLVDEAARNSNEAP 64
+++ W+ H G REN + DE A+ E P
Sbjct: 116 INWQWVKGHAGHRENEICDELAKKGAENP 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,096,054
Number of Sequences: 539616
Number of extensions: 3180898
Number of successful extensions: 8727
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8710
Number of HSP's gapped (non-prelim): 28
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)