RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16807
         (220 letters)



>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 31.1 bits (69), Expect = 0.045
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 33  WTVVSFLWIPSHVGIRENNLVDEAARN 59
              V F ++  H G  EN  VD  AR 
Sbjct: 113 PHRVRFHFVKGHTGHPENERVDREARR 139


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 31.1 bits (69), Expect = 0.048
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 23  CFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPL 65
            ++ L +      + + W+  H G  EN   DE AR +   P 
Sbjct: 101 LWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPT 143


>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 31.0 bits (69), Expect = 0.050
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 36  VSFLWIPSHVGIRENNLVDEAAR 58
           +   W+P+H GI  N  VD    
Sbjct: 101 IYVAWVPAHKGIGGNQEVDHLVS 123


>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 418

 Score = 27.7 bits (61), Expect = 1.1
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 114 TGQKLKKIKCDTRKWKSSTRDVRAEEIVVCR--LRIGHCLATHQY 156
           + +++++      +WK  TR   AE++V  +  +   H LA    
Sbjct: 9   SAEQIQQEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGA 53


>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
           {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 26.5 bits (58), Expect = 3.2
 Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 6/59 (10%)

Query: 61  NEAPLSTICTADDYRAVFKKLQLEVWAFADD---YRAVFKKVQL--EVWAKPWRENQLT 114
            +  L  + T      +    +   + F D+          ++         W E    
Sbjct: 284 RQVELLELFTTPVREGLRTCQRRPAFNFMDEMAWAATYHVLLEHFQPGDPD-WEELLFK 341


>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId:
           562]}
          Length = 416

 Score = 26.1 bits (57), Expect = 4.2
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 109 RENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCR--LRIGHCLATHQ 155
           R  Q+  ++L+K     R W+  TR   AE++V  R  +     LA   
Sbjct: 3   RTQQI--EELQKEWTQPR-WEGITRPYSAEDVVKLRGSVNPECTLAQLG 48


>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980
          {Bacillus halodurans [TaxId: 86665]}
          Length = 112

 Score = 24.0 bits (52), Expect = 8.7
 Identities = 4/18 (22%), Positives = 8/18 (44%)

Query: 73 DYRAVFKKLQLEVWAFAD 90
          +Y   +K +Q  +W    
Sbjct: 30 EYHHAYKAIQKYMWTSGG 47


>d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix
           [TaxId: 56636]}
          Length = 133

 Score = 24.1 bits (52), Expect = 9.8
 Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 120 KIKCDTRKWKSSTRDVRAE---EIVVCRLRIGHCLATHQYLLERQN 162
           ++  D R+ +S    +      +++  +L +G  L +   ++ER+ 
Sbjct: 5   RVYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKT 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.444 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 886,466
Number of extensions: 40998
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 12
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)