BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16810
(755 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/560 (68%), Positives = 442/560 (78%)
Query: 196 RVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHL 255
R+F +IMN+KK+E LL KL I LK ++K+ +GKALLKVVMR +LPA +ALL+MI +HL
Sbjct: 283 RLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHL 342
Query: 256 PSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFS 315
PSPV AQ YR E LYEGP DD I IKNCDP A LM+YVSKMVPTSDKGRFYAFGRVF+
Sbjct: 343 PSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFA 402
Query: 316 GKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQF 375
G V +GQK RI GPNY+PGKK+DL+ KAIQR +LMMGR+VE I+D P+GNI GLVG+DQF
Sbjct: 403 GTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQF 462
Query: 376 LVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCII 435
L+KTGT+TT + AHN++VMKFSVSPVV+VAVE KN DLPKLVEGLKRLSKSDP V +
Sbjct: 463 LLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYM 522
Query: 436 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKSPNK 495
ESGEHIVAG GELHLEICL+DLE DHA +P+K S PVV+YRETV ES Q LSKSPNK
Sbjct: 523 SESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNK 582
Query: 496 HNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTG 555
HNR+++KA P+ + + I+ G +NPRDDFK R R +AD Y +DVT+ARKIW FGPDG G
Sbjct: 583 HNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNG 642
Query: 556 PNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGG 615
PNL+ID TK VQYL+EIKDSVVA FQWA KEG + E +R VR NI DVTLHADAIHRGG
Sbjct: 643 PNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGG 702
Query: 616 GQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAG 675
GQIIPT RR YA L A P++ EPV+L EIQCPE AVGGIY VLN++RG V E Q G
Sbjct: 703 GQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPG 762
Query: 676 TPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQET 735
TP+F VKAYLPVNESFGFT +LR TGGQAFPQ VFDHW L DP DP SK +V
Sbjct: 763 TPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAA 822
Query: 736 RKRKGLKEGLPDLQSYLDKL 755
RKR G+KE +P Q Y DKL
Sbjct: 823 RKRHGMKEEVPGWQEYYDKL 842
Score = 211 bits (538), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 115/198 (58%), Positives = 136/198 (68%), Gaps = 6/198 (3%)
Query: 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIK 60
+MDK N+RNMSVIAHVDHGKSTLTDSLV E RFTDTRKDEQER ITIK
Sbjct: 12 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIK 71
Query: 61 STAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALX 120
STAIS+Y E+ D+D+ I + + FLINLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 72 STAISLYSEMSDEDVKEI----KQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALV 127
Query: 121 XXXXXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXXTFQRIVENVNV 180
QTETVLRQA+ ERIKPV+ +NK+DR TF R VE+VNV
Sbjct: 128 VVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNV 187
Query: 181 IIATYSDDSGPMGEVRVF 198
I++TY+D+ +G+V+V+
Sbjct: 188 IVSTYADEV--LGDVQVY 203
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/560 (68%), Positives = 441/560 (78%)
Query: 196 RVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHL 255
R+F +IMN+KK+E LL KL I LK ++K+ +GKALLKVVMR +LPA +ALL+MI +HL
Sbjct: 283 RLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHL 342
Query: 256 PSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFS 315
PSPV AQ YR E LYEGP DD I IKNCDP A LM+YVSKMVPTSDKGRFYAFGRVF+
Sbjct: 343 PSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFA 402
Query: 316 GKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQF 375
G V +GQK RI GPNY+PGKK+DL+ KAIQR +LMMGR+VE I+D P+GNI GLVG+DQF
Sbjct: 403 GTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQF 462
Query: 376 LVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCII 435
L+KTGT+TT + AHN++VMKFSVSPVV+VAVE KN DLPKLVEGLKRLSKSDP V +
Sbjct: 463 LLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYM 522
Query: 436 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKSPNK 495
ESGEHIVAG GELHLEICL+DLE DHA +P+K S PVV+YRETV ES Q LSKSPNK
Sbjct: 523 SESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNK 582
Query: 496 HNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTG 555
HNR+++KA P+ + + I+ G +NPRDDFK R R +AD Y +DVT+ARKIW FGPDG G
Sbjct: 583 HNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNG 642
Query: 556 PNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGG 615
PNL+ID TK VQYL+EIKDSVVA FQWA KEG + E +R VR NI DVTLHADAI RGG
Sbjct: 643 PNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIXRGG 702
Query: 616 GQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAG 675
GQIIPT RR YA L A P++ EPV+L EIQCPE AVGGIY VLN++RG V E Q G
Sbjct: 703 GQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPG 762
Query: 676 TPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQET 735
TP+F VKAYLPVNESFGFT +LR TGGQAFPQ VFDHW L DP DP SK +V
Sbjct: 763 TPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAA 822
Query: 736 RKRKGLKEGLPDLQSYLDKL 755
RKR G+KE +P Q Y DKL
Sbjct: 823 RKRHGMKEEVPGWQEYYDKL 842
Score = 212 bits (539), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 115/198 (58%), Positives = 136/198 (68%), Gaps = 6/198 (3%)
Query: 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIK 60
+MDK N+RNMSVIAHVDHGKSTLTDSLV E RFTDTRKDEQER ITIK
Sbjct: 12 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIK 71
Query: 61 STAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALX 120
STAIS+Y E+ D+D+ I + + FLINLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 72 STAISLYSEMSDEDVKEI----KQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALV 127
Query: 121 XXXXXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXXTFQRIVENVNV 180
QTETVLRQA+ ERIKPV+ +NK+DR TF R VE+VNV
Sbjct: 128 VVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNV 187
Query: 181 IIATYSDDSGPMGEVRVF 198
I++TY+D+ +G+V+V+
Sbjct: 188 IVSTYADEV--LGDVQVY 203
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 189/760 (24%), Positives = 320/760 (42%), Gaps = 136/760 (17%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ + D + E+ER ITI +
Sbjct: 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAV 69
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ ++ K IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 70 TTCFW--------------------KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX-------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169
Query: 170 ---TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IEL 220
TF I++ + + TY +D G + E+ + + ++ +E E L+ I L
Sbjct: 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIML 229
Query: 221 KPEDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKY 264
K + E+ + L +R T + G AL L + +LPSP+
Sbjct: 230 KYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPI 289
Query: 265 RMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324
+ G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 290 K------GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYV 341
Query: 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 384
N G+KE + R + M + E +E++ +G++ +VG+ + + TG
Sbjct: 342 Y----NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLV 390
Query: 385 FKDAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHI 442
+DA + + V PV+ VA+EPK AD KL + L RL++ DP + E+G+ I
Sbjct: 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTI 450
Query: 443 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNR 498
++G GELHLEI + L+ + + P V+YRET+++ E + + ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGH 509
Query: 499 LFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNL 558
+ +K PLP G +EF
Sbjct: 510 VKIKVEPLPRG------------------------SGFEF-------------------- 525
Query: 559 LIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQI 618
++ G E +V G + A + G L + ++ ++D + H +I
Sbjct: 526 -VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKI 584
Query: 619 IPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPM 678
+ + ++ P ++EP+ E+ PE +G + G LN RRG + M+ G
Sbjct: 585 AGSM--AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL-GMEPRGNAQ 641
Query: 679 FVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
V++A++P+ E FG+ DLRS T G+ FDH+Q +P
Sbjct: 642 -VIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 189/760 (24%), Positives = 320/760 (42%), Gaps = 136/760 (17%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ + D + E+ER ITI +
Sbjct: 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 69
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ ++ K IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 70 TTCFW--------------------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX-------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169
Query: 170 ---TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IEL 220
TF I++ + + TY +D G + E+ + + ++ +E E L+ I L
Sbjct: 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIML 229
Query: 221 KPEDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKY 264
K + E+ + L +R T + G AL L + +LPSP+
Sbjct: 230 KYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPI 289
Query: 265 RMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324
+ G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 290 K------GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYV 341
Query: 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 384
N G+KE + R + M + E +E++ +G++ +VG+ + + TG
Sbjct: 342 Y----NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLV 390
Query: 385 FKDAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHI 442
+DA + + V PV+ VA+EPK AD KL + L RL++ DP + E+G+ I
Sbjct: 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTI 450
Query: 443 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNR 498
++G GELHLEI + L+ + + P V+YRET+++ E + + ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGH 509
Query: 499 LFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNL 558
+ +K PLP G +EF
Sbjct: 510 VKIKVEPLPRG------------------------SGFEF-------------------- 525
Query: 559 LIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQI 618
++ G E +V G + A + G L + ++ ++D + H +I
Sbjct: 526 -VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKI 584
Query: 619 IPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPM 678
+ + ++ P ++EP+ E+ PE +G + G LN RRG + M+ G
Sbjct: 585 AGSM--AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL-GMEPRGNAQ 641
Query: 679 FVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
V++A++P+ E FG+ DLRS T G+ FDH+Q +P
Sbjct: 642 -VIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 189/760 (24%), Positives = 320/760 (42%), Gaps = 136/760 (17%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ + D + E+ER ITI +
Sbjct: 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 69
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ ++ K IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 70 TTCFW--------------------KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX-------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169
Query: 170 ---TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IEL 220
TF I++ + + TY +D G + E+ + + ++ +E E L+ I L
Sbjct: 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIML 229
Query: 221 KPEDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKY 264
K + E+ + L +R T + G AL L + +LPSP+
Sbjct: 230 KYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPI 289
Query: 265 RMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324
+ G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 290 K------GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYV 341
Query: 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 384
N G+KE + R + M + E +E++ +G++ +VG+ + + TG
Sbjct: 342 Y----NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLV 390
Query: 385 FKDAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHI 442
+DA + + V PV+ VA+EPK AD KL + L RL++ DP + E+G+ I
Sbjct: 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTI 450
Query: 443 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNR 498
++G GELHLEI + L+ + + P V+YRET+++ E + + ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGH 509
Query: 499 LFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNL 558
+ +K PLP G +EF
Sbjct: 510 VKIKVEPLPRG------------------------SGFEF-------------------- 525
Query: 559 LIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQI 618
++ G E +V G + A + G L + ++ ++D + H +I
Sbjct: 526 -VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKI 584
Query: 619 IPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPM 678
+ + ++ P ++EP+ E+ PE +G + G LN RRG + M+ G
Sbjct: 585 AGSM--AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL-GMEPRGNAQ 641
Query: 679 FVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
V++A++P+ E FG+ DLRS T G+ FDH+Q +P
Sbjct: 642 -VIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 189/760 (24%), Positives = 320/760 (42%), Gaps = 136/760 (17%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ + D + E+ER ITI +
Sbjct: 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 69
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ ++ K IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 70 TTCFW--------------------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX-------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169
Query: 170 ---TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IEL 220
TF I++ + + TY +D G + E+ + + ++ +E E L+ I L
Sbjct: 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIML 229
Query: 221 KPEDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKY 264
K + E+ + L +R T + G AL L + +LPSP+
Sbjct: 230 KYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPI 289
Query: 265 RMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324
+ G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 290 K------GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYV 341
Query: 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 384
N G+KE + R + M + E +E++ +G++ +VG+ + + TG
Sbjct: 342 Y----NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLV 390
Query: 385 FKDAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHI 442
+DA + + V PV+ VA+EPK AD KL + L RL++ DP + E+G+ I
Sbjct: 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTI 450
Query: 443 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNR 498
++G GELHLEI + L+ + + P V+YRET+++ E + + ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGH 509
Query: 499 LFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNL 558
+ +K PLP G +EF
Sbjct: 510 VKIKVEPLPRG------------------------SGFEF-------------------- 525
Query: 559 LIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQI 618
++ G E +V G + A + G L + ++ ++D + H +I
Sbjct: 526 -VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKI 584
Query: 619 IPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPM 678
+ + ++ P ++EP+ E+ PE +G + G LN RRG + M+ G
Sbjct: 585 AGSM--AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL-GMEPRGNAQ 641
Query: 679 FVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
V++A++P+ E FG+ DLRS T G+ FDH+Q +P
Sbjct: 642 -VIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 189/760 (24%), Positives = 320/760 (42%), Gaps = 136/760 (17%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ + D + E+ER ITI +
Sbjct: 10 KRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 69
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ ++ K IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 70 TTCFW--------------------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX-------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169
Query: 170 ---TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IEL 220
TF I++ + + TY +D G + E+ + + ++ +E E L+ I L
Sbjct: 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIML 229
Query: 221 KPEDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKY 264
K + E+ + L +R T + G AL L + +LPSP+
Sbjct: 230 KYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPI 289
Query: 265 RMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324
+ G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 290 K------GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYV 341
Query: 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 384
N G+KE + R + M + E +E++ +G++ +VG+ + + TG
Sbjct: 342 Y----NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLV 390
Query: 385 FKDAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHI 442
+DA + + V PV+ VA+EPK AD KL + L RL++ DP + E+G+ I
Sbjct: 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTI 450
Query: 443 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNR 498
++G GELHLEI + L+ + + P V+YRET+++ E + + ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGH 509
Query: 499 LFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNL 558
+ +K PLP G +EF
Sbjct: 510 VKIKVEPLPRG------------------------SGFEF-------------------- 525
Query: 559 LIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQI 618
++ G E +V G + A + G L + ++ ++D + H +I
Sbjct: 526 -VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKI 584
Query: 619 IPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPM 678
+ + ++ P ++EP+ E+ PE +G + G LN RRG + M+ G
Sbjct: 585 AGSM--AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL-GMEPRGNAQ 641
Query: 679 FVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
V++A++P+ E FG+ DLRS T G+ FDH+Q +P
Sbjct: 642 -VIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 189/760 (24%), Positives = 318/760 (41%), Gaps = 136/760 (17%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ + D + E+ER ITI + A
Sbjct: 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI-TAA 68
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
++ F D + IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 69 VTTCFWKDHR-------------------INIIDAPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX-------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169
Query: 170 ---TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IEL 220
TF I++ + + TY +D G + E+ + + ++ +E E L+ I L
Sbjct: 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIML 229
Query: 221 KPEDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKY 264
K + E+ + L +R T + G AL L + +LPSP+
Sbjct: 230 KYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPI 289
Query: 265 RMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324
+ G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 290 K------GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYV 341
Query: 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 384
N G+KE + R + M + E +E++ +G++ +VG+ + + TG
Sbjct: 342 Y----NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLV 390
Query: 385 FKDAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHI 442
+DA + + V PV+ VA+EPK AD KL + L RL++ P E+G I
Sbjct: 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTI 450
Query: 443 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNR 498
++G GEL LEI + L+ + + P V+YRET+++ E + + ++
Sbjct: 451 ISGMGELSLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGH 509
Query: 499 LFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNL 558
+ +K PLP G +EF
Sbjct: 510 VKIKVEPLPRG------------------------SGFEF-------------------- 525
Query: 559 LIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQI 618
++ G E +V G + A + G L + ++ ++D + H +I
Sbjct: 526 -VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKI 584
Query: 619 IPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPM 678
+ + ++ P ++EP+ E+ PE +G + G LN RRG + M+ G
Sbjct: 585 AGSM--AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL-GMEPRGNAQ 641
Query: 679 FVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
V++A++P+ E FG+ DLRS T G+ FDH+Q +P
Sbjct: 642 -VIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 204/802 (25%), Positives = 338/802 (42%), Gaps = 176/802 (21%)
Query: 9 RNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISM 66
RN+ + AHVD GK+T T+ ++ + TD EQER ITI S A++
Sbjct: 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73
Query: 67 YFELDDKDMVFITNPDQTAKNEKG----FLINLIDSPGHVDFSSEVTAALRVTDGALXXX 122
++ K +G + +N+ID+PGHVDF+ EV +LRV DGA+
Sbjct: 74 FW-----------------KGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVF 116
Query: 123 XXXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXXTFQRIVENVN--- 179
Q+ETV RQA + ++++NKMDR F R+VE +
Sbjct: 117 CGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA-----------NFLRVVEQIKKRL 165
Query: 180 ------VIIATYSDDSGPMGEVRVF----------DSIMNYKKEEAESLLSKLGIELKPE 223
V +A ++++ +G+V + D M Y++EE + L L E +
Sbjct: 166 GHTPVPVQLAIGAEEN-FVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRS- 223
Query: 224 DKEKDGKALLKVVMRTWLPAGEA---------LLQMIAIHLPSPVVAQKYRMEML----- 269
+ + +M +L GE L+ +A + V ++ + +
Sbjct: 224 SMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLD 283
Query: 270 ---------YEGPH------DDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVF 314
E P DDE ++ D N P K+ G F RV+
Sbjct: 284 AVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTL-TFARVY 342
Query: 315 SGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQ 374
SG +++G N + GKKE + R + M E I++V +G+I L+G+
Sbjct: 343 SGVLSSGDSVL----NSVKGKKE-----RVGRMVQMHANQREEIKEVRAGDIAALIGMKD 393
Query: 375 FLVKTG-TITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQC 433
V TG T+ + + L M F PV+ VAVEPK AD K+ L +L++ DP +
Sbjct: 394 --VTTGDTLCSIEKPIILERMDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRV 450
Query: 434 II-EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQV---CL 489
EESG+ I++G GELHL+I + ++ + + P V+YRET+++++ ++ +
Sbjct: 451 KTDEESGQTIISGMGELHLDIIVDRMKREFG-VEANIGKPQVAYRETITKDNVEIEGKFV 509
Query: 490 SKSPNK----HNRLFMKAAPLPDGLPEDID-KGEVNPRDDFKIRGRYLADKYEFDVTEAR 544
+S + H + AA D+D KG + E V E
Sbjct: 510 RQSGGRGQFGHCWIRFSAA--------DVDEKGNIT----------------EGLVFENE 545
Query: 545 KIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGF-----QWAAKEGVLSEENLRGVRF 599
+ P P + KG++ ++K+ VVAG+ + +G + + + F
Sbjct: 546 VVGGVVPKEYIPAI----QKGIE--EQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAF 599
Query: 600 NIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGV 659
I +GGG++ +EP+ E+ PE +G + G
Sbjct: 600 KIAASMATKQLAQKGGGKV-------------------LEPIMKVEVVTPEDYMGDVMGD 640
Query: 660 LNRRRGHV-FEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
LNRRRG + E V+G V++A +P+ E FG+ D+RS + G+A F +
Sbjct: 641 LNRRRGLIQGMEDTVSGK---VIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKY---- 693
Query: 719 GDPTDPGSKPYNVVQETRKRKG 740
P N+V+ K++G
Sbjct: 694 ------AEAPSNIVEALVKKQG 709
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 199/755 (26%), Positives = 311/755 (41%), Gaps = 131/755 (17%)
Query: 9 RNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFT--DTRKDEQERCITIKSTAISM 66
RN+ +IAH+D GK+T T+ ++ + D + EQ+R ITI S A +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 126
+E G +N+ID+PGHVDF+ EV +LRV DGA+
Sbjct: 71 AWE--------------------GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQS 110
Query: 127 XXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXX-----------------XXX 169
QTETV RQA + ++F+NKMD+
Sbjct: 111 GVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAED 170
Query: 170 TFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKD- 228
F+ I++ V + Y++D G E + EEA + L + E E EK
Sbjct: 171 EFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYL 230
Query: 229 -----GKALLKVVMRT------WLPA--GEA--------LLQMIAIHLPSPVVAQKYRME 267
+ LK +R + P G A +L + +LPSP+ +
Sbjct: 231 GDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPI--- 287
Query: 268 MLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIM 327
+ + + +E I D +A K++ G+ F RV+SG + +G +
Sbjct: 288 IGHRASNPEEEVIA--KADDSAEFAALAFKVMTDPYVGKL-TFFRVYSGTMTSGSYVK-- 342
Query: 328 GPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKD 387
N GK+E + R + M + I+ V SG+I VG L TGT T
Sbjct: 343 --NSTKGKRE-----RVGRLLQMHANSRQEIDTVYSGDIAAAVG----LKDTGTGDTLCG 391
Query: 388 AHN---LRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCII-EESGEHIV 443
N L M+F PV+ ++VEPK+ AD K+ + L +L + DP EE+G+ I+
Sbjct: 392 EKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVII 450
Query: 444 AGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKSPNKHNRLFMKA 503
G GELHL+I + ++++ + P+VSYRET S + ++
Sbjct: 451 GGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRET---------FKSSAQVQGKFSRQS 500
Query: 504 APLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCT 563
RG+Y EF E + F N ++
Sbjct: 501 GG----------------------RGQYGDVHIEFTPNETGAGFEF------ENAIVGGV 532
Query: 564 KGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTR 623
+Y+ SV AG + A + GVL+ L V+ ++D + H +I +
Sbjct: 533 VPREYI----PSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASL- 587
Query: 624 RVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKA 683
L + P ++EP+ I+ PE +G I G + RRG V + M+ G VV A
Sbjct: 588 -ALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRV-DGMEPRGNAQ-VVNA 644
Query: 684 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
Y+P++E FG+ LRSNT G+ FDH+ +P
Sbjct: 645 YVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVP 679
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 198/755 (26%), Positives = 311/755 (41%), Gaps = 131/755 (17%)
Query: 9 RNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFT--DTRKDEQERCITIKSTAISM 66
RN+ ++AH+D GK+T T+ ++ + D + EQ+R ITI S A +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 126
+E G +N+ID+PGHVDF+ EV +LRV DGA+
Sbjct: 71 AWE--------------------GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQS 110
Query: 127 XXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXX-----------------XXX 169
QTETV RQA + ++F+NKMD+
Sbjct: 111 GVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAED 170
Query: 170 TFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKD- 228
F+ I++ V + Y++D G E + EEA + L + E E EK
Sbjct: 171 EFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYL 230
Query: 229 -----GKALLKVVMRT------WLPA--GEA--------LLQMIAIHLPSPVVAQKYRME 267
+ LK +R + P G A +L + +LPSP+ +
Sbjct: 231 GDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPI--- 287
Query: 268 MLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIM 327
+ + + +E I D +A K++ G+ F RV+SG + +G +
Sbjct: 288 IGHRASNPEEEVIA--KADDSAEFAALAFKVMTDPYVGKL-TFFRVYSGTMTSGSYVK-- 342
Query: 328 GPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKD 387
N GK+E + R + M + I+ V SG+I VG L TGT T
Sbjct: 343 --NSTKGKRE-----RVGRLLQMHANSRQEIDTVYSGDIAAAVG----LKDTGTGDTLCG 391
Query: 388 AHN---LRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCII-EESGEHIV 443
N L M+F PV+ ++VEPK+ AD K+ + L +L + DP EE+G+ I+
Sbjct: 392 EKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVII 450
Query: 444 AGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKSPNKHNRLFMKA 503
G GELHL+I + ++++ + P+VSYRET S + ++
Sbjct: 451 GGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRET---------FKSSAQVQGKFSRQS 500
Query: 504 APLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCT 563
RG+Y EF E + F N ++
Sbjct: 501 GG----------------------RGQYGDVHIEFTPNETGAGFEF------ENAIVGGV 532
Query: 564 KGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTR 623
+Y+ SV AG + A + GVL+ L V+ ++D + H +I +
Sbjct: 533 VPREYI----PSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASL- 587
Query: 624 RVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKA 683
L + P ++EP+ I+ PE +G I G + RRG V + M+ G VV A
Sbjct: 588 -ALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRV-DGMEPRGNAQ-VVNA 644
Query: 684 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
Y+P++E FG+ LRSNT G+ FDH+ +P
Sbjct: 645 YVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVP 679
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 198/755 (26%), Positives = 310/755 (41%), Gaps = 131/755 (17%)
Query: 9 RNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFT--DTRKDEQERCITIKSTAISM 66
RN+ +IAH+D GK+T T+ ++ + D + EQ+R ITI S A +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 126
+E G +N+ID+PGHVD + EV +LRV DGA+
Sbjct: 71 AWE--------------------GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQS 110
Query: 127 XXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXX-----------------XXX 169
QTETV RQA + ++F+NKMD+
Sbjct: 111 GVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAED 170
Query: 170 TFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKD- 228
F+ I++ V + Y++D G E + EEA + L + E E EK
Sbjct: 171 EFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYL 230
Query: 229 -----GKALLKVVMRT------WLPA--GEA--------LLQMIAIHLPSPVVAQKYRME 267
+ LK +R + P G A +L + +LPSP+ +
Sbjct: 231 GDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPI--- 287
Query: 268 MLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIM 327
+ + + +E I D +A K++ G+ F RV+SG + +G +
Sbjct: 288 IGHRASNPEEEVIA--KADDSAEFAALAFKVMTDPYVGKL-TFFRVYSGTMTSGSYVK-- 342
Query: 328 GPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKD 387
N GK+E + R + M + I+ V SG+I VG L TGT T
Sbjct: 343 --NSTKGKRE-----RVGRLLQMHANSRQEIDTVYSGDIAAAVG----LKDTGTGDTLCG 391
Query: 388 AHN---LRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCII-EESGEHIV 443
N L M+F PV+ ++VEPK+ AD K+ + L +L + DP EE+G+ I+
Sbjct: 392 EKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVII 450
Query: 444 AGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKSPNKHNRLFMKA 503
G GELHL+I + ++++ + P+VSYRET S + ++
Sbjct: 451 GGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRET---------FKSSAQVQGKFSRQS 500
Query: 504 APLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCT 563
RG+Y EF E + F N ++
Sbjct: 501 GG----------------------RGQYGDVHIEFTPNETGAGFEF------ENAIVGGV 532
Query: 564 KGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTR 623
+Y+ SV AG + A + GVL+ L V+ ++D + H +I +
Sbjct: 533 VPREYI----PSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASL- 587
Query: 624 RVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKA 683
L + P ++EP+ I+ PE +G I G + RRG V + M+ G VV A
Sbjct: 588 -ALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRV-DGMEPRGNAQ-VVNA 644
Query: 684 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
Y+P++E FG+ LRSNT G+ FDH+ +P
Sbjct: 645 YVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVP 679
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 197/755 (26%), Positives = 310/755 (41%), Gaps = 131/755 (17%)
Query: 9 RNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFT--DTRKDEQERCITIKSTAISM 66
RN+ ++AH+D GK+T T+ ++ + D + EQ+R ITI S A +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 126
+E G +N+ID+PGHVD + EV +LRV DGA+
Sbjct: 71 AWE--------------------GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQS 110
Query: 127 XXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXX-----------------XXX 169
QTETV RQA + ++F+NKMD+
Sbjct: 111 GVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAED 170
Query: 170 TFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKD- 228
F+ I++ V + Y++D G E + EEA + L + E E EK
Sbjct: 171 EFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYL 230
Query: 229 -----GKALLKVVMRT------WLPA--GEA--------LLQMIAIHLPSPVVAQKYRME 267
+ LK +R + P G A +L + +LPSP+ +
Sbjct: 231 GDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPI--- 287
Query: 268 MLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIM 327
+ + + +E I D +A K++ G+ F RV+SG + +G +
Sbjct: 288 IGHRASNPEEEVIA--KADDSAEFAALAFKVMTDPYVGKL-TFFRVYSGTMTSGSYVK-- 342
Query: 328 GPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKD 387
N GK+E + R + M + I+ V SG+I VG L TGT T
Sbjct: 343 --NSTKGKRE-----RVGRLLQMHANSRQEIDTVYSGDIAAAVG----LKDTGTGDTLCG 391
Query: 388 AHN---LRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCII-EESGEHIV 443
N L M+F PV+ ++VEPK+ AD K+ + L +L + DP EE+G+ I+
Sbjct: 392 EKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVII 450
Query: 444 AGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKSPNKHNRLFMKA 503
G GELHL+I + ++++ + P+VSYRET S + ++
Sbjct: 451 GGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRET---------FKSSAQVQGKFSRQS 500
Query: 504 APLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCT 563
RG+Y EF E + F N ++
Sbjct: 501 GG----------------------RGQYGDVHIEFTPNETGAGFEF------ENAIVGGV 532
Query: 564 KGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTR 623
+Y+ SV AG + A + GVL+ L V+ ++D + H +I +
Sbjct: 533 VPREYI----PSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASL- 587
Query: 624 RVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKA 683
L + P ++EP+ I+ PE +G I G + RRG V + M+ G VV A
Sbjct: 588 -ALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRV-DGMEPRGNAQ-VVNA 644
Query: 684 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718
Y+P++E FG+ LRSNT G+ FDH+ +P
Sbjct: 645 YVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVP 679
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 242/551 (43%), Gaps = 87/551 (15%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ + D + E+ER ITI +
Sbjct: 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 69
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ ++ K IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 70 TTCFW--------------------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX-------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169
Query: 170 ---TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IEL 220
TF I++ + + TY +D G + E+ + + ++ +E E L+ I L
Sbjct: 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIML 229
Query: 221 KPEDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKY 264
K + E+ + L +R T + G AL L + +LPSP+
Sbjct: 230 KYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPI 289
Query: 265 RMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324
+ G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 290 K------GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYV 341
Query: 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 384
N G+KE + R + M + E +E++ +G++ +VG+ + + TG
Sbjct: 342 Y----NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLV 390
Query: 385 FKDAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHI 442
+DA + + V PV+ VA+EPK AD KL + L RL++ DP + E+G+ I
Sbjct: 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTI 450
Query: 443 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNR 498
++G GELHLEI + L+ + + P V+YRET+++ E + + ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGH 509
Query: 499 LFMKAAPLPDG 509
+ +K PLP G
Sbjct: 510 VKIKVEPLPRG 520
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 635 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFT 694
P ++EP+ E+ PE +G + G LN RRG + M+ G V++A++P+ E FG+
Sbjct: 599 PVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG-MEPRGNAQ-VIRAFVPLAEMFGYA 656
Query: 695 ADLRSNTGGQAFPQCVFDHWQVLP 718
DLRS T G+ FDH+Q +P
Sbjct: 657 TDLRSKTQGRGSFVMFFDHYQEVP 680
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 242/551 (43%), Gaps = 87/551 (15%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ + D + E+ER ITI +
Sbjct: 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 69
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ ++ K IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 70 TTCFW--------------------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX-------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169
Query: 170 ---TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IEL 220
TF I++ + + TY +D G + E+ + + ++ +E E L+ I L
Sbjct: 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIML 229
Query: 221 KPEDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKY 264
K + E+ + L +R T + G AL L + +LPSP+
Sbjct: 230 KYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPI 289
Query: 265 RMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324
+ G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 290 K------GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYV 341
Query: 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 384
N G+KE + R + M + E +E++ +G++ +VG+ + + TG
Sbjct: 342 Y----NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLV 390
Query: 385 FKDAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHI 442
+DA + + V PV+ VA+EPK AD KL + L RL++ DP + E+G+ I
Sbjct: 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTI 450
Query: 443 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNR 498
++G GELHLEI + L+ + + P V+YRET+++ E + + ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGH 509
Query: 499 LFMKAAPLPDG 509
+ +K PLP G
Sbjct: 510 VKIKVEPLPRG 520
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 635 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFT 694
P ++EP+ E+ PE +G + G LN RRG + M+ G V++A++P+ E FG+
Sbjct: 599 PVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG-MEPRGNAQ-VIRAFVPLAEMFGYA 656
Query: 695 ADLRSNTGGQAFPQCVFDHWQVLP 718
DLRS T G+ FDH+Q +P
Sbjct: 657 TDLRSKTQGRGSFVMFFDHYQEVP 680
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 140/549 (25%), Positives = 233/549 (42%), Gaps = 111/549 (20%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAIS 65
K +RN+ + AH+D GK+T T+ ++ A++
Sbjct: 5 KRLRNIGIAAHIDAGKTTTTERILYYTG---------------------------RIAVT 37
Query: 66 MYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 125
F D + IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 38 TCFWKDHR-------------------INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSS 78
Query: 126 XXXXXQTETVLRQAIAERIKPVLFMNKMDRXXXXXXXXXXXXXX---------------- 169
Q+ETV RQA ++ + F NKMD+
Sbjct: 79 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 138
Query: 170 -TFQRIVENVNVIIATYSDDSGP-MGEVRVFDSIMNYKKEEAESLLSKLG-----IELKP 222
TF I++ + + TY +D G + E+ + + ++ +E E L+ I LK
Sbjct: 139 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 198
Query: 223 EDKEKDGKALLKVVMR--------TWLPAGEAL--------LQMIAIHLPSPVVAQKYRM 266
+ E+ + L +R T + G AL L + +LPSP+ +
Sbjct: 199 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIK- 257
Query: 267 EMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARI 326
G + + I + DPN PL K++ GR F RV+SG + +G
Sbjct: 258 -----GTTPEGEVVEI-HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY- 309
Query: 327 MGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFK 386
N G+KE + R + M + E +E++ +G++ +VG+ + + TG +
Sbjct: 310 ---NTTKGRKE-----RVARLLRMHANHREEVEELKAGDLGAVVGLKETI--TGDTLVGE 359
Query: 387 DAHNLRVMKFSV-SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHIVA 444
DA + + V PV+ VA+EPK AD KL + L RL++ DP + E+G+ I++
Sbjct: 360 DAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 419
Query: 445 GAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE----ESDQVCLSKSPNKHNRLF 500
G GELHLEI + L+ + + P V+YRET+++ E + + ++ +
Sbjct: 420 GMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVK 478
Query: 501 MKAAPLPDG 509
+K PLP G
Sbjct: 479 IKVEPLPRG 487
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 635 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFT 694
P ++EP+ E+ PE +G + G LN RRG + M+ G V++A++P+ E FG+
Sbjct: 566 PVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG-MEPRGNAQ-VIRAFVPLAEMFGYA 623
Query: 695 ADLRSNTGGQAFPQCVFDHWQVLP 718
DLRS T G+ FDH+Q +P
Sbjct: 624 TDLRSKTQGRGSFVMFFDHYQEVP 647
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 130/482 (26%), Positives = 203/482 (42%), Gaps = 100/482 (20%)
Query: 245 EALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDK 304
+A+L + +LPSPV D A GI + + P + S P S
Sbjct: 275 QAMLDAVIDYLPSPV---------------DVPAINGILDDGKDTPAERHASDDEPFSAL 319
Query: 305 GRFYA---------FGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYV 355
A F RV+SG V +G N + +E R + M
Sbjct: 320 AFKIATDPFVGNLTFFRVYSGVVNSGDTVL----NSVKAARERF-----GRIVQMHANKR 370
Query: 356 EAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHN-LRVMKFSVSPVVRVAVEPKNPADL 414
E I++V +G+I +G+ V TG DA L M+F PV+ +AVEPK AD
Sbjct: 371 EEIKEVRAGDIAAAIGLKD--VTTGDTLCDPDAPIILERMEFP-EPVISIAVEPKTKADQ 427
Query: 415 PKLVEGLKRLSKSDPMVQCII-EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPV 473
K+ L RL+K DP + EES + I+AG GELHL+I + ++ + + P
Sbjct: 428 EKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF-NVEANVGKPQ 486
Query: 474 VSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLA 533
V+YRET+ ++ V KH + + R + G +
Sbjct: 487 VAYRETIRQKVTDV-----EGKHAK-------------------QSGGRGQY---GHVVI 519
Query: 534 DKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAG-FQWAAKEGVLSEE 592
D Y + G+ P KG +++N+IK V+ G + A +G+ +E
Sbjct: 520 DMYPLE------------PGSNP-------KGYEFINDIKGGVIPGEYIPAVDKGI--QE 558
Query: 593 NLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRV--LYASLL------TACPRLMEPVYLC 644
L+ + V +H G + ++ L AS+ A P L+EP+
Sbjct: 559 QLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKV 618
Query: 645 EIQCPEVAVGGIYGVLNRRRGHV-FEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGG 703
E++ PE G + G L+RRRG + +E +V G + A +P++E FG+ LRS T G
Sbjct: 619 EVETPEENTGDVIGDLSRRRGMLKGQESEVTGVK---IHAEVPLSEMFGYATQLRSLTKG 675
Query: 704 QA 705
+A
Sbjct: 676 RA 677
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 9 RNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISM 66
RN+ + AH+D GK+T T+ ++ + D + EQER ITI S A +
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 126
++ AK + IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 70 FW-------------SGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVG 116
Query: 127 XXXXQTETVLRQAIAERIKPVLFMNKMDR 155
Q+ETV RQA ++ + F+NKMDR
Sbjct: 117 GVQPQSETVWRQANKYKVPRIAFVNKMDR 145
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 180/408 (44%), Gaps = 76/408 (18%)
Query: 310 FGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369
F RV+SG V +G N + +E R + M E I++V +G+I
Sbjct: 335 FFRVYSGVVNSGDTVL----NSVKAARERF-----GRIVQMHANKREEIKEVRAGDIAAA 385
Query: 370 VGVDQFLVKTGTITTFKDAHN-LRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSD 428
+G+ V TG DA L M+F PV+ +AVEPK AD K+ L RL+K D
Sbjct: 386 IGLKD--VTTGDTLCDPDAPIILERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKED 442
Query: 429 PMVQCII-EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQV 487
P + EES + I+AG GELHL+I + ++ + + P V+YRET+ ++ V
Sbjct: 443 PSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF-NVEANVGKPQVAYRETIRQKVTDV 501
Query: 488 CLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIW 547
KH + + R + G + D Y +
Sbjct: 502 -----EGKHAK-------------------QSGGRGQY---GHVVIDMYPLE-------- 526
Query: 548 SFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAG-FQWAAKEGVLSEENLRGVRFNIHDVTL 606
G+ P KG +++N+IK V+ G + A +G+ +E L+ + V
Sbjct: 527 ----PGSNP-------KGYEFINDIKGGVIPGEYIPAVDKGI--QEQLKAGPLAGYPVVD 573
Query: 607 HADAIHRGGGQIIPTTRRV--LYASLL------TACPRLMEPVYLCEIQCPEVAVGGIYG 658
+H G + ++ L AS+ A P L+EP+ E++ PE G + G
Sbjct: 574 MGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIG 633
Query: 659 VLNRRRGHV-FEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 705
L+RRRG + +E +V G + A +P++E FG+ LRS T G+A
Sbjct: 634 DLSRRRGMLKGQESEVTGVK---IHAEVPLSEMFGYATQLRSLTKGRA 678
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 9 RNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISM 66
RN+ + AH+D GK+T T+ ++ + D + EQER ITI S A +
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 126
++ AK + IN+ID+PGHVDF+ EV ++RV DGA+
Sbjct: 71 FW-------------SGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVG 117
Query: 127 XXXXQTETVLRQAIAERIKPVLFMNKMDR 155
Q+ETV RQA ++ + F+NKMDR
Sbjct: 118 GVQPQSETVWRQANKYKVPRIAFVNKMDR 146
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
++KN+RN +IAHVDHGKSTL D L+ E + DT E+ER IT+K A
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKMQA 60
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ M+++ AK+ + ++LID+PGHVDFS EV+ AL +GAL
Sbjct: 61 VRMFYK---------------AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLID 105
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMD 154
QT +A+ + + + +NK+D
Sbjct: 106 ASQGIEAQTVANFWKAVEQDLVIIPVINKID 136
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTA 63
++KN+RN +IAHVDHGKSTL D L+ E + DT E+ER IT+K A
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKXQA 60
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
+ +++ AK+ + ++LID+PGHVDFS EV+ AL +GAL
Sbjct: 61 VRXFYK---------------AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLID 105
Query: 124 XXXXXXXQTETVLRQAIAERIKPVLFMNKMD 154
QT +A+ + + + +NK+D
Sbjct: 106 ASQGIEAQTVANFWKAVEQDLVIIPVINKID 136
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 16/149 (10%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAIS 65
KNIRN S+IAH+DHGKSTL+D ++ E + D+ E+ER ITIK+ +++
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM-EAQVLDSMDLERERGITIKAQSVT 60
Query: 66 MYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 125
+ D A + + + +N ID+PGHVDFS EV+ +L +GAL
Sbjct: 61 L---------------DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAG 105
Query: 126 XXXXXQTETVLRQAIAERIKPVLFMNKMD 154
QT A+ ++ V +NK+D
Sbjct: 106 QGVEAQTLANCYTAMEMDLEVVPVLNKID 134
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 16/149 (10%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAIS 65
KNIRN S+IAH+DHGKSTL+D ++ E + D+ E+ER ITIK+ +++
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM-EAQVLDSMDLERERGITIKAQSVT 60
Query: 66 MYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 125
+ D A + + + +N ID+PGHVDFS EV+ +L +GAL
Sbjct: 61 L---------------DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAG 105
Query: 126 XXXXXQTETVLRQAIAERIKPVLFMNKMD 154
QT A+ ++ V +NK+D
Sbjct: 106 QGVEAQTLANCYTAMEMDLEVVPVLNKID 134
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 138/324 (42%), Gaps = 59/324 (18%)
Query: 400 PVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQC-IIEESGEHIVAGAGELHLEICLKDL 458
P V VA+ PK D +L E L++L + DP ++ EE+GE ++ G GELHL + L
Sbjct: 381 PNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL 440
Query: 459 EEDHACIPIKKSDPVVSYRETVSEESD-QVCLSKSPNKHNR---LFMKAAPLPDGLPEDI 514
++ + ++ S P V YRET+ + ++ Q K H + ++++ P
Sbjct: 441 QD--YGVEVEFSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEP--------- 489
Query: 515 DKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKD 574
A +Y F+ W T GV ++ ++
Sbjct: 490 ------------------ASEYGFE-------WR-------------ITGGV-IPSKYQE 510
Query: 575 SVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTAC 634
++ G + AAK+GVL+ + G + +++ + H QI + + A
Sbjct: 511 AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASL--AFKKVMAEAH 568
Query: 635 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFT 694
P L+EP+Y ++ P+ VG + L RRG + M+ G + VV A +P+ E +
Sbjct: 569 PVLLEPIYRLKVLAPQERVGDVLSDLQARRGRIL-GMEQEGA-LSVVHAEVPLAEVLEYY 626
Query: 695 ADLRSNTGGQAFPQCVFDHWQVLP 718
L TGG F H+ +P
Sbjct: 627 KALPGLTGGAGAYTLEFSHYAEVP 650
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 8 IRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXE--TRFTDTRKDEQERCITIKSTAIS 65
IR ++++ H GK+TLT++L+ E T TD + + T+++
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP 68
Query: 66 MYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 125
+ F +G + L+D+PG+ DF E+ AL D AL
Sbjct: 69 LLF--------------------RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAE 108
Query: 126 XXXXXQTETVLRQAIAERIK--PVLFMNKMDR 155
TE +AER+ ++ + K+D+
Sbjct: 109 AGVQVGTERAW--TVAERLGLPRMVVVTKLDK 138
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 8 IRNMSVIAHVDHGKSTLTDSLV--SXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAIS 65
I N+ V+AHVD GK+TLT+SL+ S T TD E++R ITI++ S
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 61
Query: 66 MYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 125
+E N K +N+ID+PGH+DF +EV +L V DGA+
Sbjct: 62 FQWE-----------------NTK---VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAK 101
Query: 126 XXXXXQTETVLRQAIAERIKPVLFMNKMDR 155
QT + I + F+NK+D+
Sbjct: 102 DGVQAQTRILFHALRKMGIPTIFFINKIDQ 131
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 400 PVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESG-EHIVAGAGELHLEICLKDL 458
P+++ VEP P L++ L +S SDP+++ ++ + E I++ G++ +E+ L
Sbjct: 343 PLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALL 402
Query: 459 EEDHACIPIKKSDPVVSYRETVSEESD-QVCLSKSPNKH-NRLFMKAAPLPDG 509
+E + + I+ +P V Y E + ++ + + PN + + +PLP G
Sbjct: 403 QEKYH-VEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLG 454
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETR------FTDTRKDEQERCITIKSTA 63
++I+H D GK+TLT+ L+ + R +D E+ER I++ ++
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 123
M F D+ ++NL+D+PGH DFS + L D AL
Sbjct: 93 --MQFPYRDR------------------VVNLLDTPGHQDFSEDTYRVLTAVDSALVVID 132
Query: 124 XXXXXXXQTETVLRQAIAERIKPVL-FMNKMDR 155
QT ++ R PV+ F+NKMDR
Sbjct: 133 AAKGVEAQTRKLM-DVCRMRATPVMTFVNKMDR 164
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 9 RNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETR------FTDTRKDEQERCITIKST 62
R ++I+H D GK+TLT+ L+ ++R +D + E++R I++ ++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 63 AISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 122
+ K +LINL+D+PGH DF+ + L D AL
Sbjct: 74 VXQFPY--------------------KDYLINLLDTPGHADFTEDTYRTLTAVDSALXVI 113
Query: 123 XXXXXXXXQTETVLRQAIAERIKPV-LFMNKMDR 155
+T L + R P+ F+NK DR
Sbjct: 114 DAAKGVEPRT-IKLXEVCRLRHTPIXTFINKXDR 146
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 2 MDKKKNIR----NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCI 57
M +K+ R N+ ++ HVDHGK+TLT +L +TDT +E R I
Sbjct: 1 MGEKRKTRQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGI 47
Query: 58 TIKSTAISMYFELDDKDMVFITNPD-QTAKNEKGFL--INLIDSPGHVDFSSEVTAALRV 114
TIK + T+P +E F+ ++ IDSPGH + + A +
Sbjct: 48 TIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASL 107
Query: 115 TDGAL 119
DGA+
Sbjct: 108 MDGAI 112
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ ++ HVDHGK+TLT +L +TDT +E R ITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 70 LDDKDMVFITNP-DQTAKNEKGFL--INLIDSPGHVDFSSEVTAALRVTDGAL 119
+ T+P +E F+ ++ ID+PGH + + A + DGA+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAI 111
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 9 RNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFT------DTRKDEQERCITIKST 62
R ++I+H D GK+T+T+ ++ + R + D + E++R I+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 63 AISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 122
M F D L+NL+D+PGH DFS + L D L
Sbjct: 74 V--MQFPYHD------------------CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVI 113
Query: 123 XXXXXXXXQTETVLRQAIAERIKPVL-FMNKMDR 155
+T ++ + R P+L FMNK+DR
Sbjct: 114 DAAKGVEDRTRKLM-EVTRLRDTPILTFMNKLDR 146
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 22/174 (12%)
Query: 309 AFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICG 368
AF RV SGK G K R + + I + M +E+ G+I G
Sbjct: 316 AFMRVVSGKYEKGMKLR---------QVRTAKDVVISDALTFMAGDRSHVEEAYPGDILG 366
Query: 369 LVGVDQFLVKTGTITTFKDAHNLRVMKFS----VSPVVRVAVEPKNPADLPKLVEGLKRL 424
L GTI +MKF+ +P + + K+P +L++GL +L
Sbjct: 367 -------LHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQL 419
Query: 425 SKSDPMVQCIIEESGEHIVAGA-GELHLEICLKDLEEDHACIPIKKSDPVVSYR 477
S+ + VQ S ++ GA G L ++ + L+ ++ + +S V + R
Sbjct: 420 SE-EGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATAR 472
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 9 RNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFT------DTRKDEQERCITIKST 62
R ++I+H D GK+T+T+ ++ + R + D + E++R I+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 63 AISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 122
M F D L+NL+D+PGH DFS + L D L
Sbjct: 74 V--MQFPYHD------------------CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVI 113
Query: 123 XXXXXXXXQTETVLRQAIAERIKPVL-FMNKMDR 155
+T ++ + R P+L FMNK+DR
Sbjct: 114 DAAKGVEDRTRKLM-EVTRLRDTPILTFMNKLDR 146
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 22/174 (12%)
Query: 309 AFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICG 368
AF RV SGK G K R + + I + M +E+ G+I G
Sbjct: 316 AFMRVVSGKYEKGMKLR---------QVRTAKDVVISDALTFMAGDRSHVEEAYPGDILG 366
Query: 369 LVGVDQFLVKTGTITTFKDAHNLRVMKFS----VSPVVRVAVEPKNPADLPKLVEGLKRL 424
L GTI +MKF+ +P + + K+P +L++GL +L
Sbjct: 367 -------LHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQL 419
Query: 425 SKSDPMVQCIIEESGEHIVAGA-GELHLEICLKDLEEDHACIPIKKSDPVVSYR 477
S+ + VQ S ++ GA G L ++ + L+ ++ + +S V + R
Sbjct: 420 SE-EGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATAR 472
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ ++ HVDHGK+TLT +L +TDT +E R ITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 70 LDDKDMVFITNP-DQTAKNEKGFL--INLIDSPGHVDFSSEVTAALRVTDGAL 119
+ T+P +E F+ ++ ID+PGH + + A + DGA+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAI 111
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ + HVDHGK+TLT +L +TDT +E R ITIK
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 70 LDDKDMVFITNP-DQTAKNEKGFL--INLIDSPGHVDFSSEVTAALRVTDGAL 119
+ T+P +E F+ ++ ID+PGH + A + DGA+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAI 111
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 644 CEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGG 703
E+ PE +G + G LN RRG + M+ G V++A++P+ E FG+ DLRS T G
Sbjct: 3 VEVTTPEEYMGDVIGDLNARRGQILG-MEPRGNAQ-VIRAFVPLAEMFGYATDLRSKTQG 60
Query: 704 QA 705
+
Sbjct: 61 RG 62
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 35/125 (28%)
Query: 10 NMSVIAHVDHGKSTLTDSL------VSXXXXXXXXXXXETR---------FTDTRKDEQE 54
N+ VI HVDHGKSTL L + ++R D K+E+E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 55 RCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRV 114
R ITI T M FE K ++ +ID+PGH DF +
Sbjct: 68 RGITIDLT--FMKFE------------------TKKYVFTIIDAPGHRDFVKNMITGASQ 107
Query: 115 TDGAL 119
D A+
Sbjct: 108 ADAAI 112
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 35/125 (28%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETR---------------FTDTRKDEQE 54
N+ VI HVDHGKSTL L+ E D K+E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 55 RCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRV 114
R +TI T M FE K + +ID+PGH DF +
Sbjct: 68 RGVTINLTF--MRFET------------------KKYFFTIIDAPGHRDFVKNMITGASQ 107
Query: 115 TDGAL 119
D A+
Sbjct: 108 ADAAI 112
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 35/125 (28%)
Query: 10 NMSVIAHVDHGKSTLTDSL------VSXXXXXXXXXXXETR---------FTDTRKDEQE 54
N+ VI HVDHGKSTL L + ++R D K+E+E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 55 RCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRV 114
R ITI T M FE K ++ +ID+PGH DF +
Sbjct: 71 RGITIDLT--FMKFE------------------TKKYVFTIIDAPGHRDFVKNMITGASQ 110
Query: 115 TDGAL 119
D A+
Sbjct: 111 ADAAI 115
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 23/119 (19%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIK----STAIS 65
N+ V+ HVDHGK+TL ++ +T +E +R +TIK T I
Sbjct: 11 NIGVVGHVDHGKTTLVQAITGI-------------WTSKHSEELKRGMTIKLGYAETNIG 57
Query: 66 MYFELDDKDMVFITNPDQT---AKNEKGFL--INLIDSPGHVDFSSEVTAALRVTDGAL 119
+ E K ++T P + +E FL I+ ID+PGH + + + + DGA+
Sbjct: 58 V-CESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAI 115
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 70
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 71 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 112 PMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 70
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 71 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 112 PMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 23/119 (19%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIK----STAIS 65
N+ V+ HVDHGK+TL ++ +T +E +R +TIK T I
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGI-------------WTSKHSEELKRGMTIKLGYAETNIG 56
Query: 66 MYFELDDKDMVFITNPDQT---AKNEKGFL--INLIDSPGHVDFSSEVTAALRVTDGAL 119
+ E K ++T P + +E FL I+ ID+PGH + + + + DGA+
Sbjct: 57 V-CESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAI 114
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 71
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 72 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 112
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 113 PMPQTREHILLARQVGVPYI--VVFMNKVD 140
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 70
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 71 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 112 PMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 70
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 71 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 112 PMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI ++ + E
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS----HVE 60
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 61 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 104
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 105 PQTREHILLGRQVGVPYI--IVFLNKCD 130
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI ++ + E
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS----HVE 69
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 70 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 113
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 114 PQTREHILLGRQVGVPYI--IVFLNKCD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 70
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 71 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 112 PMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 70
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 71 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 112 PMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 70
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 71 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 112 PMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI ++ + E
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS----HVE 68
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 69 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 112
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 113 PQTREHILLGRQVGVPYI--IVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI ++ + E
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS----HVE 69
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 70 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 113
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 114 PQTREHILLGRQVGVPYI--IVFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI ++ + E
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS----HVE 68
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 69 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 112
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 113 PQTREHILLGRQVGVPYI--IVFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI ++ + E
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS----HVE 68
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 69 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 112
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 113 PQTREHILLGRQVGVPYI--IVFLNKCD 138
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 30/114 (26%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAIS 65
KNI N+ + H+DHGK+TL+ L T D + Q+R ITI
Sbjct: 18 KNI-NLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITI------ 61
Query: 66 MYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 119
D+ F +A + + I L+D+PGH D V +A + D AL
Sbjct: 62 --------DIGF------SAFKLENYRITLVDAPGHADLIRAVVSAADIIDLAL 101
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ ++ HVDHGK++LT +L +TD +E R I+I+
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIR 56
Query: 70 LDDKDMVFITN---PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 119
+ + T P+ A+ E ++ +DSPGH + + + + DGA+
Sbjct: 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAI 109
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRK--DEQERCITIKSTAISMY 67
N+ I HVDHGK+TLT +L + + D K +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEY- 70
Query: 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 127
+TAK + +D PGH D+ + DGA+
Sbjct: 71 ---------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
Query: 128 XXXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 112 PMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 26/149 (17%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXX-XXXXXETRFTDTRKDEQERCITIKSTAISMYF 68
N+ I HVDHGK+TLT +L + D +E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY-- 70
Query: 69 ELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXX 128
+TAK + +D PGH D+ + DGA+
Sbjct: 71 --------------ETAKRH----YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 129 XXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 113 MPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI ++ + E
Sbjct: 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS----HVE 353
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 354 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 397
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 398 PQTREHILLGRQVGVPYI--IVFLNKCD 423
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI ++ + E
Sbjct: 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS----HVE 353
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 354 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 397
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 398 PQTREHILLGRQVGVPYI--IVFLNKCD 423
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 20/115 (17%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ V+ HVDHGK+TL ++ + + +T E C
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESC------------- 56
Query: 70 LDDKDMVFITNPDQT---AKNEKGFL--INLIDSPGHVDFSSEVTAALRVTDGAL 119
K ++T P + +E FL I+ ID+PGH + + + + DGA+
Sbjct: 57 --KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAI 109
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE---- 60
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
+ T A D PGH D+ + DG +
Sbjct: 61 -------YSTAARHYAHT---------DCPGHADYVKNMITGTAPLDGCILVVAANDGPM 104
Query: 130 XQTETVL---RQAIAERIKPVLFMNKMD 154
QT L RQ E + V+++NK D
Sbjct: 105 PQTREHLLLARQIGVEHV--VVYVNKAD 130
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 26/149 (17%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRF-TDTRKDEQERCITIKSTAISMYF 68
N+ I HVDHGK+TLT +L + D ++E+ R ITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITINTAHVEY-- 70
Query: 69 ELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXX 128
+TAK + +D GH D+ + DGA+
Sbjct: 71 --------------ETAKRH----YSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGR 112
Query: 129 XXQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I V+FMNK+D
Sbjct: 113 MRQTREHILLARQVGVRYI--VVFMNKVD 139
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 25/148 (16%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + D +E+ R ITI + +
Sbjct: 16 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE---- 71
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
+ T A D PGH D+ DG +
Sbjct: 72 -------YSTAARHYAHT---------DCPGHADYVKNXITGTAPLDGCILVVAANDGPX 115
Query: 130 XQTETVL---RQAIAERIKPVLFMNKMD 154
QT L RQ E + V+++NK D
Sbjct: 116 PQTREHLLLARQIGVEHV--VVYVNKAD 141
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 36/145 (24%)
Query: 11 MSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFEL 70
++++ HVDHGK+TL D++ ++ EQE + I+ +
Sbjct: 11 VTIMGHVDHGKTTLLDAI-----------------RHSKVTEQE------AGGITQHI-- 45
Query: 71 DDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXX 130
Q N+K I +D+PGH F++ +VTD +
Sbjct: 46 ---------GAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMP 94
Query: 131 QTETVLRQAIAERIKPVLFMNKMDR 155
QT + A A + ++ +NKMD+
Sbjct: 95 QTVEAINHAKAANVPIIVAINKMDK 119
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 35/145 (24%)
Query: 11 MSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFEL 70
++++ HVDHGK+TL D L + + +++ I+ +
Sbjct: 7 VTIMGHVDHGKTTLLDKL-----------------------RKTQVAAMEAGGITQHI-- 41
Query: 71 DDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXX 130
++ P G I +D+PGH FS+ +VTD +
Sbjct: 42 ---GAFLVSLPS-------GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMK 91
Query: 131 QTETVLRQAIAERIKPVLFMNKMDR 155
QT ++ A + VL +NK D+
Sbjct: 92 QTVESIQHAKDAHVPIVLAINKCDK 116
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 26/115 (22%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ V+ HVDHGK+TL ++ + + +T E C
Sbjct: 10 NIGVVGHVDHGKTTLVQAITG------IWTSKKLGYAETNIGVCESC------------- 50
Query: 70 LDDKDMVFITNPDQT---AKNEKGFL--INLIDSPGHVDFSSEVTAALRVTDGAL 119
K ++T P + +E FL I+ ID+PGH + + + + DGA+
Sbjct: 51 --KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAI 103
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 45/177 (25%)
Query: 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLV---------------SXXXXXXXXXXXETRFT 46
M K+K+ N+ VI HVD GKST T L+
Sbjct: 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVL 60
Query: 47 DTRKDEQERCITIKSTAISMY-FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDF- 104
D K E+ER ITI I+++ FE T K + + +ID+PGH DF
Sbjct: 61 DKLKAERERGITID---IALWKFE--------------TPK----YQVTVIDAPGHRDFI 99
Query: 105 ------SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPVLF-MNKMD 154
+S+ A+ + G + QT A ++ ++ +NKMD
Sbjct: 100 KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 39/148 (26%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSXXXXXXXXXXXETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ + R ITI ++ + E
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAA--------------RGITINTS----HVE 54
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 129
D P + + +D PGH D+ + DGA+
Sbjct: 55 YD--------TPTRHYAH--------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 98
Query: 130 XQT-ETVL--RQAIAERIKPVLFMNKMD 154
QT E +L RQ I ++F+NK D
Sbjct: 99 PQTREHILLGRQVGVPYI--IVFLNKCD 124
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 10 NMSVIAHVDHGKSTLTDSLVS 30
N+ I HVDHGK+TLT ++ +
Sbjct: 6 NVGTIGHVDHGKTTLTAAITT 26
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor
If2EIF5B
Length = 594
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 11 MSVIAHVDHGKSTLTDSL 28
+SV+ HVDHGK+TL D +
Sbjct: 8 VSVLGHVDHGKTTLLDHI 25
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor
If2EIF5B Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor
If2EIF5B Complexed With Gdpnp
Length = 594
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 11 MSVIAHVDHGKSTLTDSL 28
+SV+ HVDHGK+TL D +
Sbjct: 8 VSVLGHVDHGKTTLLDHI 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,066,253
Number of Sequences: 62578
Number of extensions: 950555
Number of successful extensions: 2257
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2011
Number of HSP's gapped (non-prelim): 133
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)