Query psy16810
Match_columns 755
No_of_seqs 325 out of 2574
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 22:41:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469|consensus 100.0 2E-161 4E-166 1250.6 47.3 751 1-755 12-842 (842)
2 PLN00116 translation elongatio 100.0 3E-142 7E-147 1267.7 67.5 751 1-755 12-843 (843)
3 PTZ00416 elongation factor 2; 100.0 2E-141 5E-146 1257.1 66.8 745 1-755 12-836 (836)
4 COG0480 FusA Translation elong 100.0 8E-128 2E-132 1096.5 59.7 639 5-741 7-697 (697)
5 KOG0468|consensus 100.0 2E-127 5E-132 1024.2 48.6 738 1-754 121-954 (971)
6 PRK07560 elongation factor EF- 100.0 2E-126 5E-131 1120.8 62.0 697 1-753 13-731 (731)
7 TIGR00490 aEF-2 translation el 100.0 6E-122 1E-126 1080.3 62.7 696 1-744 12-720 (720)
8 KOG0465|consensus 100.0 2E-123 4E-128 993.7 37.7 623 6-722 37-714 (721)
9 PRK00007 elongation factor G; 100.0 4E-111 9E-116 985.9 61.1 625 5-721 7-683 (693)
10 PRK12739 elongation factor G; 100.0 1E-110 2E-115 983.3 58.6 621 4-721 4-680 (691)
11 KOG0467|consensus 100.0 1E-110 3E-115 913.3 39.0 714 2-743 3-870 (887)
12 TIGR00484 EF-G translation elo 100.0 6E-108 1E-112 961.3 60.4 619 4-721 6-680 (689)
13 PRK13351 elongation factor G; 100.0 5E-106 1E-110 947.6 60.3 624 4-721 4-680 (687)
14 PRK12740 elongation factor G; 100.0 5.3E-99 1E-103 887.1 57.6 608 14-721 1-662 (668)
15 KOG0464|consensus 100.0 1.6E-95 3E-100 743.4 23.1 619 6-720 35-740 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 1.2E-79 2.7E-84 700.7 48.0 468 8-724 1-478 (594)
17 PRK10218 GTP-binding protein; 100.0 6.8E-78 1.5E-82 684.7 42.0 466 6-721 3-480 (607)
18 PRK05433 GTP-binding protein L 100.0 1.9E-76 4.1E-81 677.3 47.9 468 3-717 2-481 (600)
19 TIGR01393 lepA GTP-binding pro 100.0 2.1E-75 4.6E-80 668.1 48.3 465 6-716 1-477 (595)
20 KOG0462|consensus 100.0 6.9E-69 1.5E-73 569.2 30.1 471 6-722 58-537 (650)
21 COG1217 TypA Predicted membran 100.0 5.8E-67 1.3E-71 543.9 35.9 465 6-724 3-482 (603)
22 PRK00741 prfC peptide chain re 100.0 1.1E-65 2.4E-70 579.1 37.5 420 3-481 5-472 (526)
23 COG0481 LepA Membrane GTPase L 100.0 9.4E-65 2E-69 529.1 32.9 467 4-716 5-483 (603)
24 TIGR00503 prfC peptide chain r 100.0 1.2E-63 2.6E-68 562.8 33.5 414 3-477 6-469 (527)
25 COG4108 PrfC Peptide chain rel 100.0 7E-51 1.5E-55 422.3 22.8 409 6-476 10-469 (528)
26 cd01683 EF2_IV_snRNP EF-2_doma 100.0 7.1E-39 1.5E-43 310.8 14.9 174 471-644 1-178 (178)
27 CHL00071 tufA elongation facto 100.0 6E-35 1.3E-39 323.5 26.7 298 2-386 6-307 (409)
28 COG5256 TEF1 Translation elong 100.0 7.4E-35 1.6E-39 304.4 22.5 286 3-385 2-314 (428)
29 PRK12736 elongation factor Tu; 100.0 1.9E-34 4E-39 318.1 26.1 282 4-386 8-297 (394)
30 PLN00043 elongation factor 1-a 100.0 2E-34 4.4E-39 320.5 22.7 289 2-384 1-316 (447)
31 PLN03126 Elongation factor Tu; 100.0 5.4E-34 1.2E-38 318.0 25.1 294 2-386 75-376 (478)
32 COG0050 TufB GTPases - transla 100.0 2.1E-34 4.5E-39 285.2 18.8 267 4-369 8-277 (394)
33 TIGR00485 EF-Tu translation el 100.0 1.5E-33 3.3E-38 311.3 26.6 282 3-385 7-296 (394)
34 PTZ00141 elongation factor 1- 100.0 9.7E-34 2.1E-38 315.4 24.0 290 2-385 1-317 (446)
35 cd01886 EF-G Elongation factor 100.0 1.7E-34 3.7E-39 301.1 16.8 223 10-258 1-270 (270)
36 cd01681 aeEF2_snRNP_like_IV Th 100.0 2E-34 4.4E-39 282.1 14.3 173 471-643 1-177 (177)
37 PRK12735 elongation factor Tu; 100.0 6.6E-33 1.4E-37 306.0 27.5 285 3-386 7-299 (396)
38 PRK00049 elongation factor Tu; 100.0 1.5E-32 3.3E-37 302.8 26.7 289 3-386 7-299 (396)
39 KOG0460|consensus 100.0 2.9E-33 6.2E-38 282.1 16.2 286 5-386 51-341 (449)
40 cd04168 TetM_like Tet(M)-like 100.0 2.9E-33 6.3E-38 287.0 16.6 218 10-258 1-237 (237)
41 PLN03127 Elongation factor Tu; 100.0 5.1E-32 1.1E-36 300.9 27.8 284 5-385 58-349 (447)
42 cd01885 EF2 EF2 (for archaea a 100.0 5.9E-33 1.3E-37 280.6 17.5 167 9-185 1-167 (222)
43 cd04169 RF3 RF3 subfamily. Pe 100.0 1.8E-32 4E-37 285.6 18.8 226 7-258 1-267 (267)
44 PRK05124 cysN sulfate adenylyl 100.0 2.4E-31 5.2E-36 298.4 23.8 286 5-386 24-328 (474)
45 PRK05306 infB translation init 100.0 3.3E-31 7.2E-36 308.3 25.6 313 6-450 288-628 (787)
46 TIGR02034 CysN sulfate adenyly 100.0 1.4E-31 3E-36 296.1 20.7 280 10-386 2-300 (406)
47 PRK12317 elongation factor 1-a 100.0 1.1E-30 2.3E-35 292.2 23.9 282 6-385 4-309 (425)
48 TIGR00483 EF-1_alpha translati 100.0 2.7E-30 5.9E-35 288.8 25.1 286 2-385 1-311 (426)
49 PTZ00327 eukaryotic translatio 100.0 2.9E-30 6.3E-35 286.0 22.3 264 6-370 32-329 (460)
50 COG5257 GCD11 Translation init 100.0 9.4E-30 2E-34 255.3 21.6 335 7-449 9-363 (415)
51 TIGR00487 IF-2 translation ini 100.0 7.2E-29 1.6E-33 283.1 28.6 311 7-450 86-426 (587)
52 cd04170 EF-G_bact Elongation f 100.0 1E-28 2.2E-33 259.5 16.8 219 10-258 1-268 (268)
53 KOG0458|consensus 100.0 4.4E-28 9.5E-33 262.0 21.5 286 5-384 174-487 (603)
54 PRK05506 bifunctional sulfate 100.0 3.9E-28 8.6E-33 283.5 22.4 283 7-386 23-324 (632)
55 CHL00189 infB translation init 100.0 1.7E-27 3.7E-32 274.9 25.7 257 6-383 242-499 (742)
56 PRK04000 translation initiatio 100.0 5.2E-27 1.1E-31 259.6 24.2 273 3-370 4-296 (411)
57 PRK10512 selenocysteinyl-tRNA- 99.9 1.3E-26 2.8E-31 266.8 25.5 252 10-385 2-259 (614)
58 PF00009 GTP_EFTU: Elongation 99.9 3.9E-28 8.3E-33 241.5 11.2 132 6-157 1-136 (188)
59 TIGR03680 eif2g_arch translati 99.9 5.9E-26 1.3E-30 251.5 26.5 270 6-370 2-291 (406)
60 cd01884 EF_Tu EF-Tu subfamily. 99.9 5.7E-27 1.2E-31 233.2 15.6 129 8-156 2-131 (195)
61 COG2895 CysN GTPases - Sulfate 99.9 2.9E-26 6.2E-31 233.4 16.6 311 6-417 4-335 (431)
62 COG3276 SelB Selenocysteine-sp 99.9 6.7E-26 1.4E-30 239.2 19.6 235 10-370 2-237 (447)
63 COG5258 GTPBP1 GTPase [General 99.9 2.3E-25 5.1E-30 228.2 20.8 303 4-374 113-424 (527)
64 TIGR00475 selB selenocysteine- 99.9 3.2E-25 7E-30 254.6 23.5 250 10-380 2-254 (581)
65 KOG1145|consensus 99.9 2.2E-24 4.7E-29 230.3 19.9 252 6-380 151-402 (683)
66 cd04167 Snu114p Snu114p subfam 99.9 2.6E-24 5.5E-29 218.4 16.9 159 9-182 1-162 (213)
67 COG0532 InfB Translation initi 99.9 2.8E-23 6.1E-28 225.2 20.9 256 7-383 4-259 (509)
68 cd01883 EF1_alpha Eukaryotic e 99.9 3.3E-24 7.2E-29 218.3 12.2 128 10-157 1-151 (219)
69 KOG0461|consensus 99.9 3.1E-23 6.7E-28 209.6 18.3 261 8-369 7-267 (522)
70 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 5.2E-24 1.1E-28 179.6 7.8 80 639-718 1-80 (80)
71 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.7E-23 3.6E-28 211.5 10.9 128 10-157 1-144 (208)
72 PRK04004 translation initiatio 99.9 1E-21 2.2E-26 225.1 21.4 133 6-156 4-136 (586)
73 KOG0459|consensus 99.9 1.3E-22 2.7E-27 209.8 11.3 283 5-387 76-391 (501)
74 cd01891 TypA_BipA TypA (tyrosi 99.9 1.7E-21 3.7E-26 194.8 18.2 131 7-157 1-131 (194)
75 KOG0466|consensus 99.9 3.7E-22 8.1E-27 198.8 7.5 285 6-380 36-348 (466)
76 smart00838 EFG_C Elongation fa 99.9 8.6E-22 1.9E-26 168.8 7.2 83 637-721 1-83 (85)
77 cd01890 LepA LepA subfamily. 99.8 3E-20 6.4E-25 183.1 17.0 133 9-157 1-133 (179)
78 PF00679 EFG_C: Elongation fac 99.8 3E-21 6.6E-26 166.7 7.9 85 636-721 1-85 (89)
79 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.4E-20 3E-25 191.4 13.8 144 11-156 2-151 (224)
80 TIGR00491 aIF-2 translation in 99.8 1.5E-19 3.1E-24 206.5 23.7 133 7-157 3-135 (590)
81 cd04096 eEF2_snRNP_like_C eEF2 99.8 4.5E-21 9.8E-26 162.4 8.2 80 639-718 1-80 (80)
82 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 6.4E-21 1.4E-25 160.5 7.8 78 639-718 1-78 (78)
83 cd01888 eIF2_gamma eIF2-gamma 99.8 2.9E-20 6.4E-25 187.1 12.3 136 9-157 1-151 (203)
84 cd03711 Tet_C Tet_C: C-terminu 99.8 1.2E-20 2.7E-25 158.7 6.9 78 639-718 1-78 (78)
85 PF14492 EFG_II: Elongation Fa 99.8 1.6E-20 3.6E-25 155.9 7.4 72 399-471 3-75 (75)
86 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 2.6E-20 5.6E-25 157.0 7.0 78 639-718 1-78 (78)
87 PF03764 EFG_IV: Elongation fa 99.8 5.1E-20 1.1E-24 169.0 9.6 97 536-634 24-120 (120)
88 cd03710 BipA_TypA_C BipA_TypA_ 99.8 1.1E-19 2.3E-24 153.2 8.0 78 639-717 1-78 (79)
89 cd01889 SelB_euk SelB subfamil 99.8 9.7E-19 2.1E-23 174.6 14.8 133 9-156 1-133 (192)
90 cd01514 Elongation_Factor_C El 99.8 1.6E-19 3.4E-24 152.7 7.5 79 639-718 1-79 (79)
91 cd03709 lepA_C lepA_C: This fa 99.8 3E-19 6.5E-24 150.7 7.0 78 639-717 1-79 (80)
92 KOG0463|consensus 99.7 1.5E-17 3.4E-22 170.0 11.3 309 9-385 134-455 (641)
93 cd00881 GTP_translation_factor 99.7 1.4E-16 3E-21 157.9 15.8 128 10-157 1-128 (189)
94 PRK14845 translation initiatio 99.7 3.3E-16 7.1E-21 186.9 20.0 276 21-375 474-774 (1049)
95 cd04171 SelB SelB subfamily. 99.7 1.5E-16 3.2E-21 153.9 12.1 116 10-157 2-118 (164)
96 cd01684 Tet_like_IV EF-G_domai 99.7 5.1E-16 1.1E-20 140.7 12.6 113 474-634 1-115 (115)
97 KOG1143|consensus 99.7 2.4E-16 5.2E-21 161.4 11.5 292 9-370 168-472 (591)
98 cd01680 EFG_like_IV Elongation 99.7 8.6E-16 1.9E-20 140.1 12.0 112 476-634 1-116 (116)
99 cd04090 eEF2_II_snRNP Loc2 eEF 99.6 9.6E-16 2.1E-20 133.8 10.5 94 291-384 1-94 (94)
100 cd03690 Tet_II Tet_II: This su 99.6 9.7E-16 2.1E-20 131.0 9.1 84 288-383 1-84 (85)
101 COG1159 Era GTPase [General fu 99.6 2.2E-14 4.7E-19 146.1 17.3 116 7-157 5-128 (298)
102 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 8.1E-15 1.8E-19 142.4 13.2 116 9-157 1-116 (168)
103 cd04092 mtEFG2_II_like mtEFG2_ 99.6 4.9E-15 1.1E-19 126.4 9.1 83 291-384 1-83 (83)
104 KOG1144|consensus 99.6 1.7E-14 3.7E-19 159.0 15.5 132 8-157 475-606 (1064)
105 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.6 1.9E-14 4.1E-19 131.0 11.0 112 476-634 1-116 (116)
106 cd03689 RF3_II RF3_II: this su 99.5 1.6E-14 3.4E-19 123.3 8.5 81 293-384 1-84 (85)
107 cd01693 mtEFG2_like_IV mtEF-G2 99.5 5E-14 1.1E-18 129.1 12.0 116 474-634 1-120 (120)
108 cd04088 EFG_mtEFG_II EFG_mtEFG 99.5 2.7E-14 6E-19 121.8 8.9 82 291-383 1-82 (83)
109 cd04091 mtEFG1_II_like mtEFG1_ 99.5 4.4E-14 9.5E-19 119.8 9.0 80 291-383 1-80 (81)
110 PRK00093 GTP-binding protein D 99.5 1.4E-13 3.1E-18 155.1 15.6 115 7-156 172-297 (435)
111 COG2229 Predicted GTPase [Gene 99.5 4.1E-13 8.8E-18 126.8 14.7 139 7-173 9-148 (187)
112 COG1160 Predicted GTPases [Gen 99.5 1.3E-13 2.8E-18 148.1 12.1 113 9-156 4-125 (444)
113 cd03700 eEF2_snRNP_like_II EF2 99.5 1.3E-13 2.8E-18 120.2 10.0 90 291-383 1-91 (93)
114 cd01894 EngA1 EngA1 subfamily. 99.5 1.1E-13 2.3E-18 132.7 10.4 111 12-157 1-119 (157)
115 cd04160 Arfrp1 Arfrp1 subfamil 99.5 2.5E-13 5.4E-18 132.0 12.7 116 10-157 1-121 (167)
116 TIGR00436 era GTP-binding prot 99.5 1.1E-12 2.3E-17 138.2 18.3 111 10-156 2-120 (270)
117 TIGR03594 GTPase_EngA ribosome 99.5 3.9E-13 8.5E-18 151.3 15.8 115 7-156 171-296 (429)
118 PRK15494 era GTPase Era; Provi 99.5 1.2E-12 2.5E-17 141.8 18.5 116 7-157 51-174 (339)
119 cd03691 BipA_TypA_II BipA_TypA 99.5 2.3E-13 5.1E-18 116.9 9.2 85 291-383 1-85 (86)
120 cd01895 EngA2 EngA2 subfamily. 99.5 4.8E-13 1E-17 130.1 12.4 115 8-157 2-127 (174)
121 COG1160 Predicted GTPases [Gen 99.5 8.8E-13 1.9E-17 141.7 14.8 116 7-157 177-303 (444)
122 cd01864 Rab19 Rab19 subfamily. 99.4 4.5E-13 9.8E-18 130.0 10.4 117 7-157 2-122 (165)
123 cd03699 lepA_II lepA_II: This 99.4 6.1E-13 1.3E-17 114.2 8.5 81 291-383 1-85 (86)
124 TIGR03594 GTPase_EngA ribosome 99.4 9.2E-13 2E-17 148.3 12.3 113 10-157 1-121 (429)
125 PRK00089 era GTPase Era; Revie 99.4 5.1E-12 1.1E-16 134.7 17.2 115 7-156 4-126 (292)
126 PRK03003 GTP-binding protein D 99.4 3.9E-12 8.5E-17 144.3 16.9 116 7-157 210-336 (472)
127 PRK03003 GTP-binding protein D 99.4 1.4E-12 3.1E-17 147.8 13.2 118 5-157 35-160 (472)
128 PF02421 FeoB_N: Ferrous iron 99.4 1.6E-12 3.5E-17 123.3 10.8 111 9-157 1-119 (156)
129 cd04114 Rab30 Rab30 subfamily. 99.4 1.3E-12 2.8E-17 127.1 10.1 119 2-156 1-125 (169)
130 TIGR03598 GTPase_YsxC ribosome 99.4 2.3E-12 5.1E-17 127.0 12.0 114 6-156 16-142 (179)
131 PRK00093 GTP-binding protein D 99.4 2.6E-12 5.7E-17 144.8 13.0 113 9-156 2-122 (435)
132 cd01879 FeoB Ferrous iron tran 99.4 2E-12 4.3E-17 124.1 9.1 107 13-157 1-115 (158)
133 cd04164 trmE TrmE (MnmE, ThdF, 99.4 4.4E-12 9.5E-17 121.3 11.2 111 10-157 3-121 (157)
134 TIGR00231 small_GTP small GTP- 99.3 1.3E-12 2.8E-17 124.5 7.2 114 9-157 2-122 (161)
135 cd01898 Obg Obg subfamily. Th 99.3 8E-12 1.7E-16 121.6 12.9 113 10-157 2-128 (170)
136 cd04115 Rab33B_Rab33A Rab33B/R 99.3 4.9E-12 1.1E-16 123.5 10.5 116 8-157 2-123 (170)
137 cd04105 SR_beta Signal recogni 99.3 1.3E-11 2.8E-16 124.1 13.6 114 9-157 1-123 (203)
138 PRK09518 bifunctional cytidyla 99.3 6.4E-12 1.4E-16 149.2 12.8 116 7-157 274-397 (712)
139 PRK09554 feoB ferrous iron tra 99.3 6.9E-12 1.5E-16 148.2 12.8 111 9-157 4-126 (772)
140 PRK09518 bifunctional cytidyla 99.3 6.9E-12 1.5E-16 148.9 12.7 116 7-157 449-575 (712)
141 cd04113 Rab4 Rab4 subfamily. 99.3 8.3E-12 1.8E-16 120.5 11.0 114 10-157 2-119 (161)
142 cd04124 RabL2 RabL2 subfamily. 99.3 7.3E-12 1.6E-16 121.1 10.1 113 10-156 2-117 (161)
143 PF01926 MMR_HSR1: 50S ribosom 99.3 1.7E-11 3.6E-16 111.7 11.8 106 11-152 2-116 (116)
144 cd01897 NOG NOG1 is a nucleola 99.3 1.2E-11 2.5E-16 120.3 11.4 113 9-157 1-127 (168)
145 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.6E-11 3.4E-16 125.5 12.5 108 7-156 38-146 (225)
146 cd04154 Arl2 Arl2 subfamily. 99.3 1.1E-11 2.4E-16 121.4 10.8 113 6-157 12-129 (173)
147 smart00178 SAR Sar1p-like memb 99.3 1.7E-11 3.7E-16 121.4 12.2 123 5-169 14-141 (184)
148 COG0218 Predicted GTPase [Gene 99.3 2.7E-11 5.9E-16 117.3 13.0 127 7-177 23-163 (200)
149 smart00175 RAB Rab subfamily o 99.3 1.2E-11 2.6E-16 119.5 10.6 114 10-157 2-119 (164)
150 cd04157 Arl6 Arl6 subfamily. 99.3 1.6E-11 3.6E-16 118.3 11.3 111 10-157 1-118 (162)
151 cd00878 Arf_Arl Arf (ADP-ribos 99.3 1.4E-11 3E-16 118.5 10.4 109 10-157 1-114 (158)
152 cd04151 Arl1 Arl1 subfamily. 99.3 2E-11 4.3E-16 117.6 11.4 109 10-157 1-114 (158)
153 cd04163 Era Era subfamily. Er 99.3 5.2E-11 1.1E-15 114.7 14.3 114 8-156 3-124 (168)
154 PRK15467 ethanolamine utilizat 99.3 1.7E-11 3.7E-16 118.2 10.8 100 9-157 2-105 (158)
155 cd04106 Rab23_lke Rab23-like s 99.3 1.6E-11 3.4E-16 118.5 10.6 116 10-157 2-120 (162)
156 cd04145 M_R_Ras_like M-Ras/R-R 99.3 1.8E-11 3.9E-16 118.3 10.8 113 9-157 3-121 (164)
157 cd00879 Sar1 Sar1 subfamily. 99.3 1.4E-11 3.1E-16 122.4 10.2 116 3-157 14-134 (190)
158 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 4.5E-11 9.7E-16 117.3 13.4 112 7-157 14-130 (174)
159 cd01862 Rab7 Rab7 subfamily. 99.3 3.3E-11 7.2E-16 117.4 12.1 112 10-157 2-123 (172)
160 cd01861 Rab6 Rab6 subfamily. 99.3 1.9E-11 4.1E-16 117.8 10.2 114 9-156 1-118 (161)
161 TIGR00450 mnmE_trmE_thdF tRNA 99.3 2.6E-11 5.7E-16 135.3 12.3 114 8-157 203-324 (442)
162 cd01878 HflX HflX subfamily. 99.3 2.5E-11 5.5E-16 122.2 11.1 117 6-157 39-167 (204)
163 KOG0052|consensus 99.3 1.3E-12 2.8E-17 137.4 1.3 132 2-156 1-155 (391)
164 cd04161 Arl2l1_Arl13_like Arl2 99.3 3.4E-11 7.3E-16 117.3 11.1 109 10-157 1-114 (167)
165 cd04147 Ras_dva Ras-dva subfam 99.2 3.5E-11 7.6E-16 120.6 11.0 112 10-157 1-118 (198)
166 cd01867 Rab8_Rab10_Rab13_like 99.2 7.1E-11 1.5E-15 114.9 12.7 117 7-157 2-122 (167)
167 cd00880 Era_like Era (E. coli 99.2 3.6E-11 7.8E-16 114.5 10.5 111 13-157 1-118 (163)
168 cd00154 Rab Rab family. Rab G 99.2 3.3E-11 7.1E-16 115.1 10.0 113 10-156 2-118 (159)
169 cd01866 Rab2 Rab2 subfamily. 99.2 3.1E-11 6.7E-16 117.6 9.9 115 8-156 4-122 (168)
170 PRK05291 trmE tRNA modificatio 99.2 4E-11 8.7E-16 134.6 11.7 112 9-157 216-335 (449)
171 cd04137 RheB Rheb (Ras Homolog 99.2 4.1E-11 8.8E-16 118.0 10.0 114 9-157 2-120 (180)
172 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 3.9E-11 8.4E-16 118.7 9.8 115 9-157 4-123 (183)
173 cd04159 Arl10_like Arl10-like 99.2 9.4E-11 2E-15 112.0 11.8 109 11-157 2-115 (159)
174 PRK00454 engB GTP-binding prot 99.2 9.5E-11 2.1E-15 117.0 12.2 115 6-157 22-149 (196)
175 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 1.1E-10 2.3E-15 113.4 12.0 109 11-157 2-113 (164)
176 cd01863 Rab18 Rab18 subfamily. 99.2 4.2E-11 9.2E-16 115.5 9.1 114 10-157 2-120 (161)
177 cd01893 Miro1 Miro1 subfamily. 99.2 5.6E-11 1.2E-15 115.5 9.9 112 10-157 2-117 (166)
178 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 7.6E-11 1.7E-15 114.4 10.8 116 8-157 2-121 (166)
179 cd04146 RERG_RasL11_like RERG/ 99.2 5.6E-11 1.2E-15 115.3 9.6 113 10-157 1-120 (165)
180 PRK04213 GTP-binding protein; 99.2 7.8E-11 1.7E-15 118.4 10.8 112 6-157 7-144 (201)
181 cd01860 Rab5_related Rab5-rela 99.2 6.5E-11 1.4E-15 114.3 9.7 113 10-156 3-119 (163)
182 cd04119 RJL RJL (RabJ-Like) su 99.2 7.8E-11 1.7E-15 114.1 10.2 113 10-156 2-123 (168)
183 cd04123 Rab21 Rab21 subfamily. 99.2 1.5E-10 3.4E-15 111.3 12.0 114 10-157 2-119 (162)
184 cd04116 Rab9 Rab9 subfamily. 99.2 1.9E-10 4E-15 112.2 12.5 116 7-156 4-127 (170)
185 TIGR02528 EutP ethanolamine ut 99.2 5E-11 1.1E-15 112.5 8.0 97 10-157 2-102 (142)
186 smart00173 RAS Ras subfamily o 99.2 9.1E-11 2E-15 113.5 9.9 112 10-157 2-119 (164)
187 cd04155 Arl3 Arl3 subfamily. 99.2 1.1E-10 2.3E-15 114.2 10.1 114 5-157 11-129 (173)
188 TIGR03156 GTP_HflX GTP-binding 99.2 1.3E-10 2.8E-15 126.2 11.3 115 7-156 188-314 (351)
189 cd00877 Ran Ran (Ras-related n 99.2 9.2E-11 2E-15 114.1 9.2 114 10-157 2-118 (166)
190 cd04140 ARHI_like ARHI subfami 99.2 1.7E-10 3.6E-15 112.1 10.7 112 10-157 3-122 (165)
191 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 1.7E-10 3.8E-15 115.9 11.1 112 10-156 2-123 (201)
192 PTZ00369 Ras-like protein; Pro 99.2 1.2E-10 2.7E-15 115.8 9.9 114 8-157 5-124 (189)
193 cd04139 RalA_RalB RalA/RalB su 99.2 9.8E-11 2.1E-15 113.0 9.0 113 10-157 2-119 (164)
194 cd04122 Rab14 Rab14 subfamily. 99.2 1.4E-10 3.1E-15 112.5 10.2 115 9-157 3-121 (166)
195 cd04156 ARLTS1 ARLTS1 subfamil 99.2 1.9E-10 4.2E-15 110.7 11.0 109 11-157 2-115 (160)
196 cd04110 Rab35 Rab35 subfamily. 99.2 1.8E-10 3.9E-15 115.6 11.2 118 6-157 4-124 (199)
197 cd04120 Rab12 Rab12 subfamily. 99.1 1.8E-10 3.8E-15 115.6 10.5 112 10-157 2-119 (202)
198 COG0486 ThdF Predicted GTPase 99.1 1.8E-10 3.8E-15 124.5 11.1 113 9-157 218-338 (454)
199 cd04149 Arf6 Arf6 subfamily. 99.1 2.1E-10 4.6E-15 111.8 10.5 112 7-157 8-124 (168)
200 PRK12298 obgE GTPase CgtA; Rev 99.1 5.4E-10 1.2E-14 122.7 14.5 115 8-157 159-289 (390)
201 cd01868 Rab11_like Rab11-like. 99.1 2.4E-10 5.1E-15 110.8 10.5 116 8-157 3-122 (165)
202 cd04158 ARD1 ARD1 subfamily. 99.1 2.4E-10 5.1E-15 111.5 10.5 109 10-157 1-114 (169)
203 cd04142 RRP22 RRP22 subfamily. 99.1 2E-10 4.4E-15 115.0 10.1 114 10-157 2-130 (198)
204 PLN03118 Rab family protein; P 99.1 2.8E-10 6E-15 115.3 11.2 115 8-157 14-134 (211)
205 cd04177 RSR1 RSR1 subgroup. R 99.1 2E-10 4.4E-15 111.8 9.8 112 10-157 3-120 (168)
206 cd04138 H_N_K_Ras_like H-Ras/N 99.1 1.8E-10 3.8E-15 110.9 9.2 112 10-157 3-120 (162)
207 PF09439 SRPRB: Signal recogni 99.1 2.4E-10 5.1E-15 110.9 10.0 129 8-177 3-143 (181)
208 cd04175 Rap1 Rap1 subgroup. T 99.1 4.1E-10 8.9E-15 109.0 11.7 112 10-157 3-120 (164)
209 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 3.5E-10 7.7E-15 113.2 11.5 114 9-157 1-130 (196)
210 cd00882 Ras_like_GTPase Ras-li 99.1 1.4E-10 3.1E-15 109.0 8.2 111 13-157 1-116 (157)
211 cd01881 Obg_like The Obg-like 99.1 2E-10 4.3E-15 112.3 9.4 110 13-157 1-134 (176)
212 cd04150 Arf1_5_like Arf1-Arf5- 99.1 5E-10 1.1E-14 108.1 11.9 109 10-157 2-115 (159)
213 smart00177 ARF ARF-like small 99.1 7.6E-10 1.6E-14 108.7 13.2 111 8-157 13-128 (175)
214 cd01865 Rab3 Rab3 subfamily. 99.1 2.8E-10 6E-15 110.5 10.0 115 9-157 2-120 (165)
215 PLN00223 ADP-ribosylation fact 99.1 9.6E-10 2.1E-14 108.6 13.7 112 7-157 16-132 (181)
216 cd04112 Rab26 Rab26 subfamily. 99.1 3.5E-10 7.5E-15 112.7 10.4 112 10-156 2-119 (191)
217 cd04136 Rap_like Rap-like subf 99.1 4E-10 8.6E-15 108.7 10.5 113 9-157 2-120 (163)
218 COG1084 Predicted GTPase [Gene 99.1 9.1E-10 2E-14 113.5 13.4 113 7-157 167-294 (346)
219 PRK11058 GTPase HflX; Provisio 99.1 3.9E-10 8.5E-15 125.3 11.7 114 8-156 197-322 (426)
220 cd04127 Rab27A Rab27a subfamil 99.1 4.8E-10 1E-14 110.3 11.1 127 7-157 3-134 (180)
221 cd04101 RabL4 RabL4 (Rab-like4 99.1 4.7E-10 1E-14 108.5 10.4 117 10-157 2-121 (164)
222 PLN03110 Rab GTPase; Provision 99.1 4.9E-10 1.1E-14 114.0 10.9 117 7-157 11-131 (216)
223 cd00876 Ras Ras family. The R 99.1 4.3E-10 9.3E-15 107.9 10.0 113 10-157 1-118 (160)
224 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 4E-10 8.6E-15 110.4 9.6 113 9-157 3-121 (172)
225 PLN03071 GTP-binding nuclear p 99.1 5.4E-10 1.2E-14 113.9 10.9 117 7-157 12-131 (219)
226 cd04176 Rap2 Rap2 subgroup. T 99.1 6.9E-10 1.5E-14 107.3 10.6 112 10-157 3-120 (163)
227 smart00176 RAN Ran (Ras-relate 99.1 4.2E-10 9.2E-15 112.7 9.1 69 89-157 42-113 (200)
228 cd04135 Tc10 TC10 subfamily. 99.1 2.6E-10 5.6E-15 111.5 7.4 112 10-157 2-118 (174)
229 cd04144 Ras2 Ras2 subfamily. 99.1 9.2E-10 2E-14 109.6 11.3 112 10-157 1-120 (190)
230 cd04121 Rab40 Rab40 subfamily. 99.1 9.9E-10 2.1E-14 109.1 11.2 120 4-157 2-124 (189)
231 TIGR02729 Obg_CgtA Obg family 99.1 2.7E-09 5.8E-14 114.9 15.4 115 8-157 157-287 (329)
232 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 7.3E-10 1.6E-14 108.2 10.1 114 10-157 2-120 (170)
233 PRK12299 obgE GTPase CgtA; Rev 99.1 1.2E-09 2.6E-14 117.6 12.6 115 8-157 158-285 (335)
234 cd00157 Rho Rho (Ras homology) 99.0 4.6E-10 1E-14 109.2 8.4 113 10-157 2-118 (171)
235 cd01850 CDC_Septin CDC/Septin. 99.0 1.6E-09 3.5E-14 113.9 13.1 123 9-156 5-156 (276)
236 cd04126 Rab20 Rab20 subfamily. 99.0 2.2E-09 4.7E-14 109.0 13.6 109 10-157 2-114 (220)
237 PLN03108 Rab family protein; P 99.0 1.2E-09 2.6E-14 110.5 11.0 116 6-157 4-125 (210)
238 PF08477 Miro: Miro-like prote 99.0 4E-10 8.8E-15 102.9 6.4 113 10-154 1-119 (119)
239 cd04109 Rab28 Rab28 subfamily. 99.0 1.3E-09 2.7E-14 110.9 10.5 114 10-156 2-122 (215)
240 cd04132 Rho4_like Rho4-like su 99.0 1.2E-09 2.7E-14 108.2 10.1 113 10-157 2-119 (187)
241 cd01876 YihA_EngB The YihA (En 99.0 3E-09 6.6E-14 102.6 12.5 109 11-156 2-123 (170)
242 PTZ00133 ADP-ribosylation fact 99.0 2E-09 4.4E-14 106.3 11.2 111 8-157 17-132 (182)
243 cd04118 Rab24 Rab24 subfamily. 99.0 1.8E-09 3.8E-14 107.7 10.3 115 10-157 2-119 (193)
244 cd01892 Miro2 Miro2 subfamily. 99.0 1.9E-09 4.1E-14 105.2 10.1 116 6-157 2-122 (169)
245 cd04125 RabA_like RabA-like su 99.0 2E-09 4.4E-14 106.9 10.3 113 10-156 2-118 (188)
246 cd04111 Rab39 Rab39 subfamily. 99.0 1.5E-09 3.3E-14 109.9 9.5 116 9-157 3-123 (211)
247 PF00025 Arf: ADP-ribosylation 99.0 1.5E-09 3.4E-14 106.5 9.0 123 5-169 11-138 (175)
248 cd04143 Rhes_like Rhes_like su 99.0 4.1E-09 8.9E-14 109.1 12.2 112 10-157 2-127 (247)
249 cd01874 Cdc42 Cdc42 subfamily. 99.0 2.1E-09 4.5E-14 105.5 9.4 113 9-157 2-119 (175)
250 PRK12296 obgE GTPase CgtA; Rev 99.0 9.8E-09 2.1E-13 114.8 15.4 114 8-157 159-298 (500)
251 PRK12297 obgE GTPase CgtA; Rev 99.0 4.5E-09 9.7E-14 116.1 12.5 114 8-156 158-287 (424)
252 smart00174 RHO Rho (Ras homolo 98.9 1.8E-09 3.9E-14 105.6 8.1 68 90-157 45-116 (174)
253 KOG1423|consensus 98.9 3E-09 6.4E-14 108.0 9.4 117 6-157 70-199 (379)
254 cd04130 Wrch_1 Wrch-1 subfamil 98.9 2E-09 4.3E-14 105.4 7.8 111 10-156 2-117 (173)
255 cd04134 Rho3 Rho3 subfamily. 98.9 2.3E-09 5E-14 106.6 8.4 113 9-157 1-118 (189)
256 TIGR00437 feoB ferrous iron tr 98.9 2.3E-09 5E-14 124.1 9.5 105 15-157 1-113 (591)
257 PTZ00132 GTP-binding nuclear p 98.9 6.1E-09 1.3E-13 105.8 11.3 117 7-157 8-127 (215)
258 cd01871 Rac1_like Rac1-like su 98.9 4.2E-09 9.2E-14 103.3 9.7 112 9-156 2-118 (174)
259 cd01870 RhoA_like RhoA-like su 98.9 2.8E-09 6.1E-14 104.3 8.4 113 9-157 2-119 (175)
260 cd04117 Rab15 Rab15 subfamily. 98.9 6.4E-09 1.4E-13 100.5 10.3 114 10-157 2-119 (161)
261 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 6.2E-09 1.3E-13 105.8 10.5 112 9-156 2-118 (222)
262 cd04102 RabL3 RabL3 (Rab-like3 98.9 8.7E-09 1.9E-13 103.2 11.3 117 10-157 2-143 (202)
263 cd04128 Spg1 Spg1p. Spg1p (se 98.9 6.1E-09 1.3E-13 102.9 9.8 112 10-156 2-117 (182)
264 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 8.1E-09 1.7E-13 102.0 10.4 115 6-156 3-122 (182)
265 PF10662 PduV-EutP: Ethanolami 98.9 4.2E-09 9.1E-14 97.8 7.8 97 9-156 2-102 (143)
266 cd04148 RGK RGK subfamily. Th 98.9 8.9E-09 1.9E-13 105.1 10.9 113 10-157 2-120 (221)
267 KOG1191|consensus 98.9 7.8E-09 1.7E-13 111.5 10.2 114 5-153 265-387 (531)
268 cd04133 Rop_like Rop subfamily 98.9 8.5E-09 1.8E-13 101.2 9.5 114 9-157 2-119 (176)
269 cd01875 RhoG RhoG subfamily. 98.9 8.5E-09 1.8E-13 102.7 9.6 114 9-157 4-121 (191)
270 cd04131 Rnd Rnd subfamily. Th 98.9 7.9E-09 1.7E-13 101.7 9.1 111 10-156 3-118 (178)
271 cd01896 DRG The developmentall 98.9 1.8E-08 3.9E-13 103.5 12.0 98 10-144 2-106 (233)
272 KOG0084|consensus 98.8 1.8E-08 3.9E-13 96.4 10.6 118 6-157 7-128 (205)
273 KOG0073|consensus 98.8 2.3E-08 5E-13 92.5 10.7 114 5-157 13-131 (185)
274 PLN00023 GTP-binding protein; 98.8 1.4E-08 3.1E-13 106.9 10.5 129 8-157 21-165 (334)
275 cd04104 p47_IIGP_like p47 (47- 98.8 1.6E-08 3.4E-13 101.3 9.6 115 9-157 2-121 (197)
276 smart00053 DYNc Dynamin, GTPas 98.8 3.7E-08 8.1E-13 100.6 12.3 68 90-157 124-206 (240)
277 COG0370 FeoB Fe2+ transport sy 98.8 2.2E-08 4.9E-13 112.9 11.4 111 9-157 4-122 (653)
278 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 2.7E-08 5.9E-13 101.7 10.8 113 9-156 14-130 (232)
279 PF00071 Ras: Ras family; Int 98.8 7.3E-08 1.6E-12 92.9 12.1 123 10-167 1-127 (162)
280 KOG1532|consensus 98.7 3.6E-09 7.8E-14 105.6 2.4 163 6-177 17-215 (366)
281 cd01853 Toc34_like Toc34-like 98.7 1.5E-07 3.3E-12 97.2 14.2 27 6-32 29-55 (249)
282 KOG1489|consensus 98.7 9.2E-08 2E-12 97.9 11.3 111 7-156 195-325 (366)
283 COG1100 GTPase SAR1 and relate 98.7 7.6E-08 1.6E-12 97.9 10.1 115 9-157 6-125 (219)
284 PRK09866 hypothetical protein; 98.7 7.2E-08 1.6E-12 108.3 10.5 67 90-156 229-302 (741)
285 cd04129 Rho2 Rho2 subfamily. 98.7 6.3E-08 1.4E-12 96.1 8.9 113 9-157 2-119 (187)
286 PF03144 GTP_EFTU_D2: Elongati 98.6 2.9E-08 6.3E-13 82.5 3.6 74 305-383 1-74 (74)
287 KOG0394|consensus 98.6 2.1E-07 4.5E-12 88.0 9.5 118 6-157 7-132 (210)
288 COG2262 HflX GTPases [General 98.6 1.6E-07 3.4E-12 100.2 9.9 117 6-157 190-318 (411)
289 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 3.6E-07 7.9E-12 92.8 12.1 114 10-157 1-125 (232)
290 KOG0080|consensus 98.6 1.1E-07 2.3E-12 87.6 7.1 116 8-157 11-131 (209)
291 cd04103 Centaurin_gamma Centau 98.6 1.8E-07 4E-12 90.1 9.3 106 10-156 2-112 (158)
292 KOG0070|consensus 98.6 1.4E-07 3.1E-12 89.8 7.9 122 7-170 16-142 (181)
293 PF00350 Dynamin_N: Dynamin fa 98.6 1.6E-07 3.6E-12 91.2 8.4 64 90-153 100-168 (168)
294 COG3596 Predicted GTPase [Gene 98.6 3.3E-07 7.1E-12 92.7 10.0 115 7-157 38-162 (296)
295 cd01873 RhoBTB RhoBTB subfamil 98.5 4.4E-07 9.4E-12 90.7 10.5 66 89-156 64-133 (195)
296 TIGR02836 spore_IV_A stage IV 98.5 6.3E-07 1.4E-11 96.0 11.7 131 8-155 17-192 (492)
297 KOG0090|consensus 98.5 3.3E-07 7.2E-12 88.9 8.0 127 8-176 38-175 (238)
298 COG5192 BMS1 GTP-binding prote 98.5 4E-07 8.7E-12 98.7 9.3 107 9-157 70-177 (1077)
299 KOG0075|consensus 98.4 2.9E-07 6.3E-12 83.5 5.9 111 10-158 22-137 (186)
300 KOG0078|consensus 98.4 8.9E-07 1.9E-11 86.2 9.7 120 4-157 8-131 (207)
301 KOG0092|consensus 98.4 4.8E-07 1E-11 86.5 7.2 117 7-157 4-124 (200)
302 KOG0098|consensus 98.4 9.9E-07 2.2E-11 83.6 8.7 116 8-157 6-125 (216)
303 KOG0094|consensus 98.4 2.1E-06 4.5E-11 82.1 11.0 118 6-157 20-142 (221)
304 TIGR00991 3a0901s02IAP34 GTP-b 98.4 3.3E-06 7.1E-11 88.7 12.4 115 7-156 37-166 (313)
305 PRK13768 GTPase; Provisional 98.3 8E-07 1.7E-11 92.4 6.7 67 91-157 97-176 (253)
306 PF03029 ATP_bind_1: Conserved 98.3 1.9E-07 4.2E-12 95.9 1.7 66 92-157 92-170 (238)
307 COG1163 DRG Predicted GTPase [ 98.3 2.4E-06 5.3E-11 88.1 9.6 116 8-160 63-190 (365)
308 PRK14722 flhF flagellar biosyn 98.3 2.8E-06 6.1E-11 92.1 10.7 135 8-156 137-294 (374)
309 KOG0079|consensus 98.3 1.7E-06 3.7E-11 78.6 7.2 70 88-157 54-126 (198)
310 KOG0074|consensus 98.3 4.5E-06 9.8E-11 75.4 9.2 115 5-157 14-133 (185)
311 PF04548 AIG1: AIG1 family; I 98.3 1.9E-05 4.1E-10 80.0 15.0 114 9-157 1-130 (212)
312 KOG0087|consensus 98.3 1.7E-06 3.7E-11 83.9 6.9 116 8-157 14-133 (222)
313 KOG0095|consensus 98.3 6.5E-06 1.4E-10 74.8 10.2 120 4-157 3-126 (213)
314 KOG0076|consensus 98.2 2.6E-06 5.6E-11 79.9 7.0 121 6-158 15-141 (197)
315 KOG0086|consensus 98.2 3.3E-06 7.1E-11 77.1 7.0 117 7-157 8-128 (214)
316 KOG4252|consensus 98.2 1.5E-06 3.3E-11 81.4 4.6 117 7-157 19-138 (246)
317 cd03698 eRF3_II_like eRF3_II_l 98.1 1.3E-05 2.7E-10 68.3 9.0 69 290-373 1-71 (83)
318 COG0536 Obg Predicted GTPase [ 98.1 1.6E-05 3.4E-10 83.0 11.4 108 8-156 159-288 (369)
319 KOG0093|consensus 98.1 2.5E-05 5.3E-10 71.2 10.9 115 9-157 22-140 (193)
320 cd01342 Translation_Factor_II_ 98.1 9.2E-06 2E-10 68.0 7.9 71 291-373 1-71 (83)
321 PTZ00258 GTP-binding protein; 98.1 1.2E-05 2.5E-10 87.9 10.6 101 6-125 19-126 (390)
322 PF05049 IIGP: Interferon-indu 98.1 1.2E-05 2.5E-10 86.9 9.8 116 8-157 35-155 (376)
323 KOG0395|consensus 98.1 6.6E-06 1.4E-10 82.0 7.4 114 8-157 3-122 (196)
324 cd03693 EF1_alpha_II EF1_alpha 98.1 1.6E-05 3.4E-10 68.9 8.5 83 288-384 2-87 (91)
325 PF00735 Septin: Septin; Inte 98.1 1.8E-05 3.9E-10 83.3 10.6 123 9-156 5-155 (281)
326 KOG0088|consensus 98.1 3E-06 6.6E-11 77.8 4.0 115 9-157 14-132 (218)
327 KOG0071|consensus 98.1 2.1E-05 4.6E-10 71.0 9.2 121 9-171 18-143 (180)
328 KOG0077|consensus 98.1 2.8E-05 6E-10 72.5 10.1 70 89-158 62-136 (193)
329 PRK09435 membrane ATPase/prote 98.1 1.6E-05 3.5E-10 85.2 10.0 60 89-157 147-208 (332)
330 KOG2486|consensus 98.0 1.7E-05 3.7E-10 80.2 8.8 113 7-157 135-262 (320)
331 cd01900 YchF YchF subfamily. 98.0 1.2E-05 2.6E-10 84.0 7.9 95 11-126 1-104 (274)
332 TIGR00750 lao LAO/AO transport 98.0 1.8E-05 4E-10 84.5 8.9 62 89-157 125-186 (300)
333 PRK09601 GTP-binding protein Y 98.0 2.2E-05 4.8E-10 84.7 9.1 99 9-126 3-108 (364)
334 PTZ00099 rab6; Provisional 98.0 1.2E-05 2.5E-10 79.0 5.8 69 89-157 27-99 (176)
335 TIGR00073 hypB hydrogenase acc 97.9 1.7E-05 3.7E-10 80.0 6.5 137 6-157 20-162 (207)
336 cd03115 SRP The signal recogni 97.9 9.6E-05 2.1E-09 72.2 10.7 67 89-157 81-153 (173)
337 cd03114 ArgK-like The function 97.9 5.6E-05 1.2E-09 71.9 8.5 59 89-154 90-148 (148)
338 cd03110 Fer4_NifH_child This p 97.8 0.00022 4.7E-09 70.1 12.3 66 89-156 91-156 (179)
339 cd01899 Ygr210 Ygr210 subfamil 97.8 7.5E-05 1.6E-09 80.0 8.7 37 90-126 68-111 (318)
340 cd03688 eIF2_gamma_II eIF2_gam 97.8 0.00017 3.7E-09 63.3 9.2 95 287-383 2-105 (113)
341 TIGR00993 3a0901s04IAP86 chlor 97.8 0.00019 4.1E-09 81.7 11.9 114 8-157 118-250 (763)
342 cd01858 NGP_1 NGP-1. Autoanti 97.7 2.8E-05 6.1E-10 74.8 3.9 26 8-33 102-127 (157)
343 TIGR00064 ftsY signal recognit 97.7 0.0003 6.4E-09 73.9 11.8 66 89-156 153-230 (272)
344 TIGR01425 SRP54_euk signal rec 97.7 0.00036 7.9E-09 77.1 12.9 63 89-156 181-252 (429)
345 PRK09602 translation-associate 97.7 0.00012 2.6E-09 80.9 9.1 38 90-127 71-115 (396)
346 PRK10416 signal recognition pa 97.7 0.00014 3.1E-09 77.9 9.5 133 7-156 113-272 (318)
347 cd04089 eRF3_II eRF3_II: domai 97.7 0.00021 4.6E-09 60.6 8.5 65 290-370 1-65 (82)
348 PRK12727 flagellar biosynthesi 97.7 0.00063 1.4E-08 76.5 14.5 66 89-156 427-497 (559)
349 KOG1954|consensus 97.7 0.0003 6.6E-09 73.7 11.1 79 91-175 147-237 (532)
350 PF03193 DUF258: Protein of un 97.7 3.4E-05 7.4E-10 73.6 3.7 23 9-31 36-58 (161)
351 PF00448 SRP54: SRP54-type pro 97.7 0.00014 3.1E-09 72.5 8.3 143 9-157 2-154 (196)
352 PRK11889 flhF flagellar biosyn 97.6 0.00041 8.9E-09 75.1 12.0 63 90-156 320-390 (436)
353 COG4917 EutP Ethanolamine util 97.6 4.7E-05 1E-09 67.8 3.7 98 9-156 2-103 (148)
354 COG5019 CDC3 Septin family pro 97.6 0.00052 1.1E-08 72.7 11.6 123 9-156 24-175 (373)
355 KOG3883|consensus 97.6 0.00038 8.3E-09 64.0 9.0 116 8-156 9-131 (198)
356 KOG1490|consensus 97.5 0.00053 1.1E-08 74.8 10.5 137 6-182 166-318 (620)
357 KOG3886|consensus 97.5 0.00022 4.9E-09 70.2 6.9 116 8-157 4-130 (295)
358 KOG2655|consensus 97.5 0.00058 1.3E-08 72.9 10.5 145 9-185 22-197 (366)
359 cd04178 Nucleostemin_like Nucl 97.5 0.0002 4.4E-09 69.8 6.2 25 9-33 118-142 (172)
360 cd01849 YlqF_related_GTPase Yl 97.5 0.00021 4.6E-09 68.5 6.1 26 7-32 99-124 (155)
361 cd03696 selB_II selB_II: this 97.4 0.00049 1.1E-08 58.5 7.3 66 291-370 1-66 (83)
362 cd01851 GBP Guanylate-binding 97.4 0.0003 6.4E-09 71.9 7.0 92 5-126 4-103 (224)
363 cd03694 GTPBP_II Domain II of 97.4 0.00065 1.4E-08 58.3 8.0 69 291-369 1-69 (87)
364 PRK00771 signal recognition pa 97.4 0.0007 1.5E-08 75.5 10.2 62 90-156 175-245 (437)
365 cd03697 EFTU_II EFTU_II: Elong 97.4 0.00045 9.7E-09 59.3 6.5 68 291-370 1-68 (87)
366 KOG0096|consensus 97.4 0.00043 9.3E-09 66.3 6.9 123 1-157 1-128 (216)
367 cd02038 FleN-like FleN is a me 97.3 0.0015 3.3E-08 61.4 10.4 79 91-176 45-125 (139)
368 PRK12723 flagellar biosynthesi 97.3 0.001 2.3E-08 73.0 10.4 66 89-156 253-325 (388)
369 PF03308 ArgK: ArgK protein; 97.3 0.00037 8.1E-09 70.9 6.4 76 89-177 120-195 (266)
370 cd03112 CobW_like The function 97.3 0.0006 1.3E-08 65.6 7.6 63 90-155 86-158 (158)
371 PRK05703 flhF flagellar biosyn 97.3 0.00082 1.8E-08 75.1 9.5 65 90-156 299-370 (424)
372 PRK12726 flagellar biosynthesi 97.3 0.0018 3.9E-08 70.0 11.5 25 7-31 205-229 (407)
373 TIGR00101 ureG urease accessor 97.3 0.0012 2.5E-08 66.2 9.6 59 90-157 91-151 (199)
374 KOG0410|consensus 97.3 0.00069 1.5E-08 70.2 7.8 115 7-156 177-307 (410)
375 PRK14974 cell division protein 97.3 0.00029 6.3E-09 75.9 5.2 62 90-156 222-292 (336)
376 cd03695 CysN_NodQ_II CysN_NodQ 97.3 0.0011 2.5E-08 55.9 7.6 65 291-369 1-65 (81)
377 cd02036 MinD Bacterial cell di 97.3 0.0016 3.4E-08 63.7 9.9 63 92-156 64-127 (179)
378 cd01855 YqeH YqeH. YqeH is an 97.2 0.0003 6.6E-09 69.9 4.6 24 9-32 128-151 (190)
379 KOG0072|consensus 97.2 0.00049 1.1E-08 62.7 5.2 70 89-158 60-134 (182)
380 PRK14721 flhF flagellar biosyn 97.2 0.00099 2.2E-08 73.7 8.3 64 89-156 268-339 (420)
381 cd01857 HSR1_MMR1 HSR1/MMR1. 97.2 0.00033 7.2E-09 66.0 3.8 22 10-31 85-106 (141)
382 PRK12724 flagellar biosynthesi 97.2 0.00063 1.4E-08 74.6 6.2 66 89-156 298-372 (432)
383 PRK06995 flhF flagellar biosyn 97.2 0.0024 5.1E-08 71.9 10.9 24 8-31 256-279 (484)
384 PRK12288 GTPase RsgA; Reviewed 97.1 0.00036 7.7E-09 75.8 4.2 23 10-32 207-229 (347)
385 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.00079 1.7E-08 63.4 5.5 52 105-156 2-55 (141)
386 KOG1547|consensus 97.1 0.00068 1.5E-08 67.2 4.9 23 8-30 46-68 (336)
387 TIGR00959 ffh signal recogniti 97.1 0.0033 7.2E-08 70.0 11.0 63 89-156 181-252 (428)
388 cd03111 CpaE_like This protein 97.1 0.0023 5E-08 57.1 8.0 59 92-152 44-106 (106)
389 TIGR00157 ribosome small subun 97.1 0.00074 1.6E-08 69.9 5.4 23 9-31 121-143 (245)
390 TIGR03596 GTPase_YlqF ribosome 97.0 0.0019 4E-08 68.3 7.9 24 8-31 118-141 (276)
391 KOG0097|consensus 97.0 0.0035 7.7E-08 56.7 8.4 116 8-157 11-130 (215)
392 PRK12289 GTPase RsgA; Reviewed 97.0 0.001 2.2E-08 72.3 6.0 23 10-32 174-196 (352)
393 cd02042 ParA ParA and ParB of 97.0 0.0037 8E-08 55.3 8.6 45 91-137 40-84 (104)
394 PRK14723 flhF flagellar biosyn 97.0 0.0055 1.2E-07 72.2 12.1 24 8-31 185-208 (767)
395 KOG0448|consensus 97.0 0.0042 9.1E-08 70.4 10.5 135 8-157 109-275 (749)
396 KOG0081|consensus 96.9 0.00074 1.6E-08 62.4 3.6 68 90-157 66-138 (219)
397 PRK10867 signal recognition pa 96.9 0.0043 9.3E-08 69.1 10.1 63 89-156 182-253 (433)
398 PRK09563 rbgA GTPase YlqF; Rev 96.9 0.0014 3.1E-08 69.6 6.0 24 8-31 121-144 (287)
399 KOG0091|consensus 96.9 0.0044 9.5E-08 57.9 8.1 68 90-157 57-130 (213)
400 cd01854 YjeQ_engC YjeQ/EngC. 96.8 0.0013 2.8E-08 69.8 5.2 23 9-31 162-184 (287)
401 TIGR00092 GTP-binding protein 96.8 0.0041 8.8E-08 67.5 8.9 97 9-126 3-109 (368)
402 TIGR03597 GTPase_YqeH ribosome 96.8 0.0015 3.3E-08 71.6 5.8 25 9-33 155-179 (360)
403 PRK06731 flhF flagellar biosyn 96.8 0.012 2.7E-07 61.4 12.1 64 90-157 154-225 (270)
404 cd01858 NGP_1 NGP-1. Autoanti 96.8 0.0025 5.4E-08 61.2 6.5 49 108-156 2-52 (157)
405 COG1162 Predicted GTPases [Gen 96.8 0.0012 2.7E-08 68.8 4.5 22 9-30 165-186 (301)
406 TIGR00257 IMPACT_YIGZ uncharac 96.8 0.01 2.2E-07 59.0 10.5 113 590-708 88-200 (204)
407 COG1161 Predicted GTPases [Gen 96.8 0.0013 2.7E-08 70.9 4.5 35 9-43 133-167 (322)
408 COG1419 FlhF Flagellar GTP-bin 96.7 0.0064 1.4E-07 65.9 9.4 133 7-157 202-352 (407)
409 KOG0083|consensus 96.7 0.00047 1E-08 61.8 0.6 68 89-156 45-116 (192)
410 cd01856 YlqF YlqF. Proteins o 96.7 0.0026 5.7E-08 62.0 5.8 24 8-31 115-138 (171)
411 cd01859 MJ1464 MJ1464. This f 96.7 0.0025 5.5E-08 61.0 5.4 50 107-156 5-54 (156)
412 PRK13796 GTPase YqeH; Provisio 96.7 0.0022 4.7E-08 70.5 5.4 24 9-32 161-184 (365)
413 KOG1486|consensus 96.7 0.0023 5E-08 63.9 5.0 83 9-127 63-152 (364)
414 COG1703 ArgK Putative periplas 96.7 0.0058 1.3E-07 63.3 7.9 62 89-158 142-204 (323)
415 PRK11568 hypothetical protein; 96.6 0.016 3.4E-07 57.7 10.4 114 589-708 87-200 (204)
416 COG0523 Putative GTPases (G3E 96.6 0.01 2.3E-07 63.6 9.8 158 8-181 1-176 (323)
417 PRK10463 hydrogenase nickel in 96.6 0.014 3E-07 61.3 10.3 26 6-31 102-127 (290)
418 KOG1707|consensus 96.6 0.0051 1.1E-07 68.6 7.3 113 9-157 10-129 (625)
419 cd02037 MRP-like MRP (Multiple 96.5 0.0063 1.4E-07 59.2 6.7 66 89-156 66-134 (169)
420 cd01856 YlqF YlqF. Proteins o 96.4 0.0029 6.2E-08 61.7 4.1 57 98-156 2-59 (171)
421 PRK00098 GTPase RsgA; Reviewed 96.4 0.004 8.6E-08 66.5 5.5 23 9-31 165-187 (298)
422 cd01859 MJ1464 MJ1464. This f 96.4 0.006 1.3E-07 58.3 6.1 24 7-30 100-123 (156)
423 KOG0393|consensus 96.4 0.003 6.5E-08 62.1 3.9 69 88-156 50-122 (198)
424 COG0012 Predicted GTPase, prob 96.4 0.0091 2E-07 63.9 7.8 100 9-126 3-109 (372)
425 TIGR03596 GTPase_YlqF ribosome 96.4 0.0036 7.7E-08 66.1 4.6 56 99-156 5-61 (276)
426 cd00066 G-alpha G protein alph 96.3 0.0088 1.9E-07 64.4 7.1 69 89-157 159-242 (317)
427 PRK08099 bifunctional DNA-bind 96.3 0.003 6.5E-08 70.0 3.4 29 7-35 218-246 (399)
428 KOG1534|consensus 96.2 0.016 3.5E-07 56.7 7.4 66 92-157 99-178 (273)
429 cd03692 mtIF2_IVc mtIF2_IVc: t 96.2 0.021 4.6E-07 48.5 7.4 71 293-374 3-75 (84)
430 smart00275 G_alpha G protein a 96.1 0.014 3.1E-07 63.4 7.8 69 89-157 182-265 (342)
431 COG3640 CooC CO dehydrogenase 96.1 0.026 5.5E-07 56.6 8.5 64 90-156 133-198 (255)
432 cd03702 IF2_mtIF2_II This fami 96.1 0.034 7.3E-07 48.3 8.3 68 293-375 3-70 (95)
433 PF02492 cobW: CobW/HypB/UreG, 96.1 0.0077 1.7E-07 59.2 4.8 82 90-179 84-171 (178)
434 COG0541 Ffh Signal recognition 95.9 0.02 4.3E-07 62.4 7.7 144 7-156 99-252 (451)
435 PRK11537 putative GTP-binding 95.9 0.055 1.2E-06 58.2 10.8 143 7-157 3-164 (318)
436 KOG1533|consensus 95.9 0.0059 1.3E-07 60.7 3.0 68 90-157 96-177 (290)
437 PRK09563 rbgA GTPase YlqF; Rev 95.8 0.0067 1.4E-07 64.5 3.6 57 98-156 7-64 (287)
438 PRK13695 putative NTPase; Prov 95.8 0.013 2.9E-07 57.2 5.3 38 117-154 97-137 (174)
439 KOG1491|consensus 95.8 0.023 4.9E-07 59.7 7.1 105 2-126 14-126 (391)
440 PF09547 Spore_IV_A: Stage IV 95.7 0.077 1.7E-06 57.7 10.9 128 9-155 18-192 (492)
441 PF06858 NOG1: Nucleolar GTP-b 95.6 0.034 7.5E-07 43.0 5.7 49 106-154 4-58 (58)
442 cd02117 NifH_like This family 95.6 0.077 1.7E-06 53.6 10.1 66 89-155 115-187 (212)
443 TIGR02475 CobW cobalamin biosy 95.6 0.026 5.6E-07 61.4 6.9 26 6-31 2-27 (341)
444 KOG0447|consensus 95.5 0.15 3.2E-06 56.5 12.1 149 5-173 305-508 (980)
445 TIGR03348 VI_IcmF type VI secr 95.5 0.028 6.2E-07 71.0 7.8 44 113-156 200-256 (1169)
446 cd01983 Fer4_NifH The Fer4_Nif 95.4 0.086 1.9E-06 45.1 8.4 44 92-135 35-79 (99)
447 cd03701 IF2_IF5B_II IF2_IF5B_I 95.2 0.11 2.3E-06 45.3 8.3 69 293-376 3-71 (95)
448 KOG2485|consensus 95.1 0.029 6.3E-07 58.4 5.1 75 8-113 143-219 (335)
449 cd01855 YqeH YqeH. YqeH is an 95.1 0.02 4.3E-07 56.8 3.7 57 99-157 19-75 (190)
450 cd04178 Nucleostemin_like Nucl 95.1 0.039 8.4E-07 53.8 5.7 41 116-156 1-43 (172)
451 COG0552 FtsY Signal recognitio 95.1 0.11 2.4E-06 55.0 9.3 136 7-155 138-296 (340)
452 cd01849 YlqF_related_GTPase Yl 95.1 0.023 4.9E-07 54.4 4.0 41 116-156 1-42 (155)
453 PF13555 AAA_29: P-loop contai 95.0 0.025 5.3E-07 44.8 3.3 21 10-30 25-45 (62)
454 KOG2423|consensus 95.0 0.019 4.1E-07 61.1 3.3 38 6-43 305-342 (572)
455 KOG1424|consensus 94.8 0.026 5.6E-07 62.4 4.1 37 8-44 314-350 (562)
456 COG0563 Adk Adenylate kinase a 94.7 0.041 8.9E-07 53.9 4.9 103 9-150 1-111 (178)
457 KOG1673|consensus 94.6 0.11 2.3E-06 48.5 6.8 115 9-157 21-138 (205)
458 KOG0780|consensus 94.6 0.094 2E-06 56.1 7.3 64 88-156 181-253 (483)
459 cd02040 NifH NifH gene encodes 94.4 0.072 1.6E-06 55.9 6.2 38 89-126 115-153 (270)
460 COG0572 Udk Uridine kinase [Nu 94.3 0.053 1.1E-06 54.3 4.4 33 1-33 1-33 (218)
461 TIGR01007 eps_fam capsular exo 94.2 0.11 2.5E-06 51.9 6.9 68 89-157 126-194 (204)
462 PRK01889 GTPase RsgA; Reviewed 94.1 0.058 1.3E-06 59.1 4.8 65 9-104 196-260 (356)
463 KOG2484|consensus 94.1 0.064 1.4E-06 57.6 4.8 28 6-33 250-277 (435)
464 PF13207 AAA_17: AAA domain; P 93.9 0.057 1.2E-06 48.9 3.7 24 10-33 1-24 (121)
465 TIGR01969 minD_arch cell divis 93.9 0.15 3.2E-06 52.7 7.3 66 89-156 107-173 (251)
466 PRK13849 putative crown gall t 93.8 0.13 2.9E-06 52.6 6.6 64 89-154 82-151 (231)
467 COG3523 IcmF Type VI protein s 93.8 0.067 1.5E-06 66.0 5.0 46 111-156 211-269 (1188)
468 KOG3887|consensus 93.8 0.062 1.4E-06 53.7 3.9 119 10-163 29-155 (347)
469 PRK05800 cobU adenosylcobinami 93.8 0.32 6.9E-06 47.3 8.8 24 10-33 3-26 (170)
470 TIGR01287 nifH nitrogenase iro 93.6 0.11 2.5E-06 54.6 5.7 63 90-152 115-183 (275)
471 COG1149 MinD superfamily P-loo 93.5 0.17 3.6E-06 52.0 6.5 64 91-156 164-227 (284)
472 COG0396 sufC Cysteine desulfur 93.5 0.1 2.2E-06 52.3 4.9 76 10-117 32-114 (251)
473 PRK13230 nitrogenase reductase 93.5 0.19 4.2E-06 53.0 7.3 63 90-152 116-183 (279)
474 PRK05480 uridine/cytidine kina 93.3 0.085 1.8E-06 53.1 4.1 26 7-32 5-30 (209)
475 TIGR03877 thermo_KaiC_1 KaiC d 93.3 0.26 5.6E-06 50.7 7.8 24 8-31 21-44 (237)
476 cd02019 NK Nucleoside/nucleoti 93.3 0.065 1.4E-06 43.6 2.6 22 10-31 1-22 (69)
477 PRK10751 molybdopterin-guanine 93.3 0.076 1.6E-06 51.6 3.5 26 6-31 4-29 (173)
478 PRK08118 topology modulation p 93.2 0.08 1.7E-06 51.4 3.6 25 9-33 2-26 (167)
479 cd03703 aeIF5B_II aeIF5B_II: T 93.2 0.46 9.9E-06 42.3 7.9 75 293-375 3-86 (110)
480 TIGR01968 minD_bact septum sit 93.2 0.19 4E-06 52.3 6.6 64 90-155 111-175 (261)
481 COG0703 AroK Shikimate kinase 93.1 0.18 3.9E-06 48.7 5.7 95 9-150 3-101 (172)
482 PF09186 DUF1949: Domain of un 93.1 0.17 3.7E-06 39.0 4.7 56 646-704 1-56 (56)
483 PF03205 MobB: Molybdopterin g 93.0 0.097 2.1E-06 49.2 3.6 22 10-31 2-23 (140)
484 PF13671 AAA_33: AAA domain; P 93.0 0.094 2E-06 49.0 3.6 23 11-33 2-24 (143)
485 PF07015 VirC1: VirC1 protein; 93.0 0.29 6.3E-06 49.5 7.2 65 89-155 82-152 (231)
486 PRK13232 nifH nitrogenase redu 92.9 0.19 4.2E-06 52.8 6.3 66 89-154 115-185 (273)
487 COG1136 SalX ABC-type antimicr 92.9 0.083 1.8E-06 53.4 3.2 19 10-28 33-51 (226)
488 cd01120 RecA-like_NTPases RecA 92.8 0.39 8.4E-06 45.5 7.7 22 11-32 2-23 (165)
489 PRK07261 topology modulation p 92.7 0.1 2.2E-06 50.8 3.6 23 10-32 2-24 (171)
490 PRK14530 adenylate kinase; Pro 92.7 0.11 2.4E-06 52.6 3.9 26 9-34 4-29 (215)
491 PRK05057 aroK shikimate kinase 92.7 0.12 2.7E-06 50.3 4.0 26 8-33 4-29 (172)
492 PRK12289 GTPase RsgA; Reviewed 92.5 0.18 3.8E-06 55.0 5.4 46 111-156 86-133 (352)
493 TIGR01360 aden_kin_iso1 adenyl 92.5 0.12 2.7E-06 50.7 3.9 28 7-34 2-29 (188)
494 KOG3859|consensus 92.5 0.32 7E-06 49.7 6.7 23 8-30 42-64 (406)
495 TIGR00235 udk uridine kinase. 92.3 0.13 2.9E-06 51.7 3.8 27 6-32 4-30 (207)
496 cd03238 ABC_UvrA The excision 92.2 0.11 2.4E-06 50.8 3.1 23 9-31 22-44 (176)
497 PRK04195 replication factor C 92.2 1.7 3.7E-05 49.8 13.1 26 8-33 39-64 (482)
498 cd01854 YjeQ_engC YjeQ/EngC. 92.1 0.14 3.1E-06 54.3 4.0 45 112-156 76-122 (287)
499 COG1126 GlnQ ABC-type polar am 92.1 0.12 2.5E-06 51.5 2.9 20 9-28 29-48 (240)
500 COG1618 Predicted nucleotide k 92.0 1 2.3E-05 42.8 9.0 24 8-31 5-28 (179)
No 1
>KOG0469|consensus
Probab=100.00 E-value=2e-161 Score=1250.57 Aligned_cols=751 Identities=83% Similarity=1.264 Sum_probs=720.2
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
+|.+..+|||+.+++|+|||||||+++|...+|.|+..++|.+|++|.+++|++|||||+++++++.|+-.+....+..
T Consensus 12 lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k- 90 (842)
T KOG0469|consen 12 LMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIK- 90 (842)
T ss_pred HhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhc-
Confidence 4778899999999999999999999999999999998899999999999999999999999999999975444433332
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
...+++++.|||||.|||+||++|+.+|||+.|||++|||+++|++.||+++++||...++..++|+|||||...++
T Consensus 91 ---~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLEL 167 (842)
T KOG0469|consen 91 ---QEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLEL 167 (842)
T ss_pred ---CCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhh
Confidence 22345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhceeeEEEecCCC-C-----C-Ccce--------------------------------------
Q psy16810 161 QLDAEDLYQTFQRIVENVNVIIATYSDDS-G-----P-MGEV-------------------------------------- 195 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~-~-----~-~~~~-------------------------------------- 195 (755)
+++.+++++.|+++++.+|.++..|+.+. + + .+.+
T Consensus 168 q~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~ 247 (842)
T KOG0469|consen 168 QLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGD 247 (842)
T ss_pred cCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcc
Confidence 99999999999999999999998876521 0 0 0111
Q ss_pred -----------------------------------EeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhc
Q psy16810 196 -----------------------------------RVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTW 240 (755)
Q Consensus 196 -----------------------------------~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~ 240 (755)
++++++.+...+++..|++++++.+..++...+++.|++.+|++|
T Consensus 248 ~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~w 327 (842)
T KOG0469|consen 248 NFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKW 327 (842)
T ss_pred cccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHh
Confidence 667888899999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecC
Q psy16810 241 LPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVAT 320 (755)
Q Consensus 241 ~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~ 320 (755)
+|.+++||++|.-+||||..++++|.+.+|+|+.+++.+.++++||+++|+++||+|+.+..+.|+|++|||||||++..
T Consensus 328 LPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~ 407 (842)
T KOG0469|consen 328 LPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFT 407 (842)
T ss_pred cchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCc
Q psy16810 321 GQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSP 400 (755)
Q Consensus 321 g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~P 400 (755)
|+++++.++||.+|++|+++.+.|++.+.|||+..++++.++||+|+++.|++++++++|||++.+..+.+..++|+..|
T Consensus 408 G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSP 487 (842)
T KOG0469|consen 408 GLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSP 487 (842)
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeec
Q psy16810 401 VVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 480 (755)
Q Consensus 401 v~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi 480 (755)
|++++||++++.|++||.++|++|+++||.+.+..+|+||++|.|.||||||||+++|++.|+++.++.|+|.|+||||+
T Consensus 488 VV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEtv 567 (842)
T KOG0469|consen 488 VVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETV 567 (842)
T ss_pred eEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcccCCceecCCCeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceee
Q psy16810 481 SEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLI 560 (755)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~ 560 (755)
++.++..|..+++++|++++++++|+++++.+.|+++++++++++|.+..++.++|+|+.+++++||||||+++|||+++
T Consensus 568 s~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll~ 647 (842)
T KOG0469|consen 568 SEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLLV 647 (842)
T ss_pred ccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeec
Q psy16810 561 DCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEP 640 (755)
Q Consensus 561 ~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP 640 (755)
|.++|++|+++|++++..|||||.++|||+|+-++||+|.+.|..+|+|++|+++||+++.+|++|+.+++.|+|+|+||
T Consensus 648 D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~EP 727 (842)
T KOG0469|consen 648 DQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQEP 727 (842)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCC
Q psy16810 641 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGD 720 (755)
Q Consensus 641 i~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~ 720 (755)
+|.|||+||++++|.||++|++|||++.+++...|++.+.|+|++|+.|+|||..+|||.|.|+|..+|.||||+++|+|
T Consensus 728 vylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~lpgd 807 (842)
T KOG0469|consen 728 VYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSILPGD 807 (842)
T ss_pred eEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeeccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhcCCCCCCCCcccccccC
Q psy16810 721 PTDPGSKPYNVVQETRKRKGLKEGLPDLQSYLDKL 755 (755)
Q Consensus 721 ~~~~~~~~~~~~~~~r~rkGl~~~~~~~~~~~~~~ 755 (755)
|++..+.+-+++.++||||||++.+|.++.|+|+|
T Consensus 808 p~dp~sk~~~iV~~~RKrkglke~~P~~~~y~Dkl 842 (842)
T KOG0469|consen 808 PLDPTSKPGQIVLATRKRKGLKEGVPDLDEYLDKL 842 (842)
T ss_pred CCCCCccchHHHHHHHHhcCCCCCCCChHHHhhcC
Confidence 99999999999999999999999999999999987
No 2
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=3.1e-142 Score=1267.71 Aligned_cols=751 Identities=66% Similarity=1.066 Sum_probs=664.8
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
||+++++||||||+||+|||||||+++|++.+|.++....|.++++|+.++|++||+||+++.+++.|..........+
T Consensus 12 ~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~- 90 (843)
T PLN00116 12 IMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFK- 90 (843)
T ss_pred HhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccc-
Confidence 5788999999999999999999999999999999998778888899999999999999999999999962110000000
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
...+.+++.|||||||||.||..++.+|++.+|+||+||||.+|++.||+.+|+++...++|+|+|+||||+...++
T Consensus 91 ---~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~ 167 (843)
T PLN00116 91 ---GERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
T ss_pred ---cccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhh
Confidence 00122478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhceeeEE----------EecCC------------------------------------------
Q psy16810 161 QLDAEDLYQTFQRIVENVNVIIA----------TYSDD------------------------------------------ 188 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v~~~~~----------~~~~~------------------------------------------ 188 (755)
++++++++..|.++++.+|..+. .+.+.
T Consensus 168 ~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~ 247 (843)
T PLN00116 168 QVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 247 (843)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhcc
Confidence 99999999999999999871111 11000
Q ss_pred ------CCC--Ccc------------------eEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC
Q psy16810 189 ------SGP--MGE------------------VRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP 242 (755)
Q Consensus 189 ------~~~--~~~------------------~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p 242 (755)
... ..+ .++++.+++.|++.++++++++++.++.+++....+.+++..+..|+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~ 327 (843)
T PLN00116 248 NFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLP 327 (843)
T ss_pred ceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcC
Confidence 000 000 034577888899999999998777888888766667778888899999
Q ss_pred ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCC
Q psy16810 243 AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQ 322 (755)
Q Consensus 243 ~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~ 322 (755)
+.+.|||+|++++|+|.++++.+...++.+...++.....+.|++++|++|+|||++++++.|++++|+|||||+|++||
T Consensus 328 ~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~ 407 (843)
T PLN00116 328 ASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGM 407 (843)
T ss_pred ChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCC
Confidence 99999999999999999887777766665543333334567899999999999999999988887999999999999999
Q ss_pred eEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCC--CccccccccccCCc
Q psy16810 323 KARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFK--DAHNLRVMKFSVSP 400 (755)
Q Consensus 323 ~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~--~~~~~~~~~~~~~P 400 (755)
.|+++++|++.+++++.+..+++++|.++|++++++++|+|||||++.|++++..+++||++.. .+..++++.++.+|
T Consensus 408 ~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~P 487 (843)
T PLN00116 408 KVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSP 487 (843)
T ss_pred EEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCc
Confidence 9999998888776655555689999999999999999999999999999987655577998776 45566777775589
Q ss_pred eEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhHHHHHHHHHHhhcc-ceeeEeeCcEEEEEee
Q psy16810 401 VVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELHLEICLKDLEEDHA-CIPIKKSDPVVSYRET 479 (755)
Q Consensus 401 v~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~f~-~vev~~~~p~V~yrET 479 (755)
+++++|||.+++|++||.+||++|++|||+|++.+++|||++|+||||||||+|++||+++|+ +|++++|+|+|+||||
T Consensus 488 v~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrET 567 (843)
T PLN00116 488 VVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRET 567 (843)
T ss_pred eEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEec
Confidence 999999999999999999999999999999999889999999999999999999999999996 8999999999999999
Q ss_pred ccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCcee
Q psy16810 480 VSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLL 559 (755)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l 559 (755)
|.++++..+.++.+++|++++++++|+++++.+.++.+.+...++.+.....+...++|+...++++|+|||+..++|++
T Consensus 568 I~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~~ 647 (843)
T PLN00116 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMV 647 (843)
T ss_pred ccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceEE
Confidence 99987766666778999999999999999988888888776665555555666678899999999999999998899999
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceee
Q psy16810 560 IDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLME 639 (755)
Q Consensus 560 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlE 639 (755)
++.+.|.+|.++++++|++||+||+++|||||+||+||+|+|+|+++|.++.++++++|++|+++||++||++|+|+|||
T Consensus 648 ~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~LlE 727 (843)
T PLN00116 648 VDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLLE 727 (843)
T ss_pred EECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEee
Confidence 99888889999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred cEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCC
Q psy16810 640 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPG 719 (755)
Q Consensus 640 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~ 719 (755)
|||+|||+||++++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+
T Consensus 728 Pi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~~v~~ 807 (843)
T PLN00116 728 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSS 807 (843)
T ss_pred ceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeEECCC
Confidence 99999999999999999999999999999999877776689999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCCCCCCcccccccC
Q psy16810 720 DPTDPGSKPYNVVQETRKRKGLKEGLPDLQSYLDKL 755 (755)
Q Consensus 720 ~~~~~~~~~~~~~~~~r~rkGl~~~~~~~~~~~~~~ 755 (755)
||++++|+||+||++|||||||++++|.+++|+|+|
T Consensus 808 dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~d~~ 843 (843)
T PLN00116 808 DPLEAGSQAAQLVADIRKRKGLKEQMPPLSEYEDKL 843 (843)
T ss_pred CCCCchhHHHHHHHHHHhhCCCCCCCCCHHHhcccC
Confidence 999999999999999999999999999999999986
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=2.5e-141 Score=1257.12 Aligned_cols=745 Identities=71% Similarity=1.128 Sum_probs=665.1
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
+|+++++||||||+||+|||||||+++|++.+|.+++...|+++++|++++|++|||||+++.+++.|.....
T Consensus 12 ~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~------- 84 (836)
T PTZ00416 12 IMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLE------- 84 (836)
T ss_pred HhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccc-------
Confidence 4678899999999999999999999999999999988788888889999999999999999999999962210
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
...+.+++.|||||||||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+|+|+||||+...++
T Consensus 85 ---~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~ 161 (836)
T PTZ00416 85 ---DGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILEL 161 (836)
T ss_pred ---cccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhc
Confidence 01122478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhceeeEE-------------------Ee------------------------------------
Q psy16810 161 QLDAEDLYQTFQRIVENVNVIIA-------------------TY------------------------------------ 185 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v~~~~~-------------------~~------------------------------------ 185 (755)
++++++++..|.++++.+|..+. -|
T Consensus 162 ~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~ 241 (836)
T PTZ00416 162 QLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGD 241 (836)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhcc
Confidence 99999999999999998873210 00
Q ss_pred ---cCCCCC--Cc----c----------------eEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhc
Q psy16810 186 ---SDDSGP--MG----E----------------VRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTW 240 (755)
Q Consensus 186 ---~~~~~~--~~----~----------------~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~ 240 (755)
...... .. . .++++++++.|++.+++++++++..++.++.....+.++++++++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~ 321 (836)
T PTZ00416 242 NFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKW 321 (836)
T ss_pred ccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHH
Confidence 000000 00 0 0456778899999999999988888888776555567888888999
Q ss_pred cCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecC
Q psy16810 241 LPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVAT 320 (755)
Q Consensus 241 ~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~ 320 (755)
+|+.++|||+|++++|+|.+++..+...++.+...+......+.|++++|++|+|||+.++++.|++++|+|||||+|+.
T Consensus 322 ~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~ 401 (836)
T PTZ00416 322 LPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVAT 401 (836)
T ss_pred hchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecC
Confidence 99999999999999999998776666555544333333345678999999999999999999999878999999999999
Q ss_pred CCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCc
Q psy16810 321 GQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSP 400 (755)
Q Consensus 321 g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~P 400 (755)
||.|+++++|++.+++|++..++|+++|.++|++..++++|+|||||+|.|++++..++|||++...+..+.++.++++|
T Consensus 402 g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~~~~~l~~i~~~~~P 481 (836)
T PTZ00416 402 GQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSETAHNIRDMKYSVSP 481 (836)
T ss_pred CCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCCCcccccccccCCCC
Confidence 99999999888877666555556999999999999999999999999999999866678899887766677777775589
Q ss_pred eEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeec
Q psy16810 401 VVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 480 (755)
Q Consensus 401 v~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi 480 (755)
+++++|||.+++|++||.+||++|++|||+|++++++|||++|+||||+|||+|++||+++|++|++++|+|+|+|||||
T Consensus 482 v~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI 561 (836)
T PTZ00416 482 VVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETV 561 (836)
T ss_pred eEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEe
Confidence 99999999999999999999999999999999988999999999999999999999999999789999999999999999
Q ss_pred cccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceee
Q psy16810 481 SEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLI 560 (755)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~ 560 (755)
++.++..+.+++++++++++++++|+++++.+.++.+........+.....+..+|+|+...++++|+|+|+..|+|+++
T Consensus 562 ~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~ 641 (836)
T PTZ00416 562 TEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLV 641 (836)
T ss_pred cccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEE
Confidence 99988888888888899999999999999888888877655545555555566789999999999999999999999999
Q ss_pred eccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeec
Q psy16810 561 DCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEP 640 (755)
Q Consensus 561 ~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP 640 (755)
|.+.+.+|.++++++|++||+||+++|||||+||+||+|+|+|+++|++..++++++|++|+++||++||++|+|+||||
T Consensus 642 ~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEP 721 (836)
T PTZ00416 642 DVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEP 721 (836)
T ss_pred ecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEee
Confidence 98888889999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred EEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCC
Q psy16810 641 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGD 720 (755)
Q Consensus 641 i~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~ 720 (755)
||+|||+||++++|+|++||++|||+|+++++.+|+..++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+|
T Consensus 722 i~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~d 801 (836)
T PTZ00416 722 MFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVPGD 801 (836)
T ss_pred eEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECCCC
Confidence 99999999999999999999999999999998778766899999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhcCCCCCCCCcccccccC
Q psy16810 721 PTDPGSKPYNVVQETRKRKGLKEGLPDLQSYLDKL 755 (755)
Q Consensus 721 ~~~~~~~~~~~~~~~r~rkGl~~~~~~~~~~~~~~ 755 (755)
||+++|+||+||++|||||||++++|++++|+|||
T Consensus 802 p~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~~~~ 836 (836)
T PTZ00416 802 PLEPGSKANEIVLSIRKRKGLKPEIPDLDNYLDKL 836 (836)
T ss_pred CCCchhHHHHHHHHHHHhCCCCCCCCCHHHhcccC
Confidence 99999999999999999999999999999999997
No 4
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-128 Score=1096.47 Aligned_cols=639 Identities=36% Similarity=0.540 Sum_probs=543.3
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCccc----ccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETR----FTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~----~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
.+++|||+|+||+|||||||+++||+++|.+++ .|+++ +||++++|++|||||+++++++.|+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----------- 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWK----------- 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-----------
Confidence 678999999999999999999999999999995 56555 9999999999999999999999996
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
.+++|||||||||+||..|+.++||++|+||+||||++|+++||+++|+||.++++|+++|||||||.++++
T Consensus 74 --------~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 74 --------GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADF 145 (697)
T ss_pred --------CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccCh
Confidence 149999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhceeeEE-----------------EecCC-CCCCcce-------------EeehhhhcccHHHH
Q psy16810 161 QLDAEDLYQTFQRIVENVNVIIA-----------------TYSDD-SGPMGEV-------------RVFDSIMNYKKEEA 209 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v~~~~~-----------------~~~~~-~~~~~~~-------------~l~e~v~~~~~e~l 209 (755)
...+++++.++...+..+|..+. .|... ......+ .+.+.+++.|++.+
T Consensus 146 ~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~ 225 (697)
T COG0480 146 YLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELM 225 (697)
T ss_pred hhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHH
Confidence 99999999988886655554332 12210 0000011 35667788887788
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHH-HhccC----------ChHHHHHHHHhcCCCCccccccchhhccCCCCCccc
Q psy16810 210 ESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLP----------AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEA 278 (755)
Q Consensus 210 ~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p----------~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 278 (755)
+.|++ |..++.+++. ..+.+... +.++| +.++|||++++|+|+|.+.+.. .+...++.
T Consensus 226 e~yl~--g~e~~~~~i~---~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~------~g~~~~~~ 294 (697)
T COG0480 226 EKYLE--GEEPTEEEIK---KALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPI------KGDLDDEI 294 (697)
T ss_pred HHHhc--CCCccHHHHH---HHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccc------cccCCccc
Confidence 88877 3444444432 22222222 33444 3589999999999999987732 23222221
Q ss_pred cccc-cccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceee
Q psy16810 279 AIGI-KNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEA 357 (755)
Q Consensus 279 ~~~~-~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~ 357 (755)
.... ..+++++|++|+|||+..+++.|+ ++|+|||||+|++||.|+ |.+.++++ +|++++.++|+++++
T Consensus 295 ~~~~~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~RvysGtl~~G~~v~----n~~~~~~e-----rv~~l~~~~~~~~~~ 364 (697)
T COG0480 295 EKAVLRKASDEGPLSALVFKIMTDPFVGK-LTFVRVYSGTLKSGSEVL----NSTKGKKE-----RVGRLLLMHGNEREE 364 (697)
T ss_pred cchhcccCCCCCceEEEEEEeEecCCCCe-EEEEEEeccEEcCCCEEE----eCCCCccE-----EEEEEEEccCCceee
Confidence 1111 134668999999999999999998 899999999999999999 55556666 899999999999999
Q ss_pred eccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-EC
Q psy16810 358 IEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IE 436 (755)
Q Consensus 358 v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~ 436 (755)
+++++||||+++.||+++ ..++|+|+......+..+.++ +||++++|+|++++|++||.+||++|++|||+|++. ++
T Consensus 365 v~~~~AG~I~a~~Gl~~~-~tGdTl~~~~~~v~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~ 442 (697)
T COG0480 365 VDEVPAGDIVALVGLKDA-TTGDTLCDENKPVILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDE 442 (697)
T ss_pred cccccCccEEEEEccccc-ccCCeeecCCCccccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcC
Confidence 999999999999999985 346799987756778899998 999999999999999999999999999999999997 79
Q ss_pred CCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeee----ecCCceeEEEEEEEeCCCCCcc
Q psy16810 437 ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLS----KSPNKHNRLFMKAAPLPDGLPE 512 (755)
Q Consensus 437 etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~----~~~~~~~~v~l~~~Pl~~~~~~ 512 (755)
||||++|+|||||||||+++||+++| ||++++++|+|+|||||.+.+.....+ ..+++|++++++++|++++..
T Consensus 443 Etge~iIsGmGELHLei~~drl~~~~-~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~- 520 (697)
T COG0480 443 ETGETIISGMGELHLEIIVDRLKREF-GVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSG- 520 (697)
T ss_pred CcccEEEEecchhhHHHHHHHHHhhc-CceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcc-
Confidence 99999999999999999999999999 999999999999999999887743333 357899999999999987641
Q ss_pred ccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCC
Q psy16810 513 DIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEE 592 (755)
Q Consensus 513 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~ 592 (755)
+.|. + ...|...++++.+++++||+||+++|||+||
T Consensus 521 -----------------------~~f~----~-----------------~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~ 556 (697)
T COG0480 521 -----------------------FEFV----D-----------------KIVGGVVPKEYIPAVEKGFREALKSGPLAGY 556 (697)
T ss_pred -----------------------eEEE----e-----------------ecccCcCchhhhHHHHHHHHHHHhcCCCCCC
Confidence 2221 0 0011123445669999999999999999999
Q ss_pred CeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeee
Q psy16810 593 NLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQ 672 (755)
Q Consensus 593 pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~ 672 (755)
||+||+|+|.|+++|++. ++..+|++|+++||++|+++|+|+||||||+|||++|++++|+|+++|++|||+|++++.
T Consensus 557 pv~dvkv~L~dgs~h~vd--ss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~ 634 (697)
T COG0480 557 PVVDVKVTLLDGSYHEVD--SSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQ 634 (697)
T ss_pred ceEeeEEEEEcCccccCC--CCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceee
Confidence 999999999999999855 567889999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCCCCCCCchHHHHHHHHhhcCC
Q psy16810 673 VAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQETRKRKGL 741 (755)
Q Consensus 673 ~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~~~~~~~~~~~~~~~r~rkGl 741 (755)
..++..++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|. |+|++++.+.|+|||+
T Consensus 635 ~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~------~~a~~ii~~~~~~~~~ 697 (697)
T COG0480 635 RPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPS------SVAEEIIAKRRKRKGL 697 (697)
T ss_pred ccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCH------HHHHHHHHHhhhhcCC
Confidence 76666789999999999999999999999999999999999999994 5799999999999986
No 5
>KOG0468|consensus
Probab=100.00 E-value=2.3e-127 Score=1024.20 Aligned_cols=738 Identities=42% Similarity=0.749 Sum_probs=677.6
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccc-cccCcccccCCchhhhhhccccccceEEEEeeeCcccccccc
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG-AKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFIT 79 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 79 (755)
||+++..+|||+++||-+||||+|++.|...++---+ ......+|+|.+..|++||+||++...++...
T Consensus 121 l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~---------- 190 (971)
T KOG0468|consen 121 LMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLS---------- 190 (971)
T ss_pred hccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEe----------
Confidence 6899999999999999999999999999887763221 12223479999999999999999999988775
Q ss_pred CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhc
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLE 159 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~ 159 (755)
..+++++.+|++|||||++|+.|+.++|+.+|++++|||+.+|++-+|+++++++.+.++|++++|||+||...+
T Consensus 191 -----D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilE 265 (971)
T KOG0468|consen 191 -----DSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILE 265 (971)
T ss_pred -----cCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHH
Confidence 234578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHhhhceeeEEEecCCCCC---------------------------------------------Ccc
Q psy16810 160 LQLDAEDLYQTFQRIVENVNVIIATYSDDSGP---------------------------------------------MGE 194 (755)
Q Consensus 160 ~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~---------------------------------------------~~~ 194 (755)
+++++.++|.+++.+++.+|..+..|..+.+. +|+
T Consensus 266 LkLPP~DAY~KLrHii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGd 345 (971)
T KOG0468|consen 266 LKLPPMDAYYKLRHIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGD 345 (971)
T ss_pred hcCChHHHHHHHHHHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhcc
Confidence 99999999999999999998555444322100 011
Q ss_pred e-------------------------------EeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCC
Q psy16810 195 V-------------------------------RVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPA 243 (755)
Q Consensus 195 ~-------------------------------~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~ 243 (755)
+ +++..+.+..++.+..++..+++.++.+++..+.+.+++-++.+++..
T Consensus 346 vYf~~ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~ 425 (971)
T KOG0468|consen 346 VYFHSKTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGI 425 (971)
T ss_pred ccccccccccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccc
Confidence 1 455566666677788888999999999999999999999999999987
Q ss_pred hHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCe
Q psy16810 244 GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQK 323 (755)
Q Consensus 244 g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~ 323 (755)
...+.|++++++|||.+..+.+....|.|+.+.........|++++|++.++.|+++..+.-.|.+|+||+||+++.|+.
T Consensus 426 ~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~ 505 (971)
T KOG0468|consen 426 ESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQD 505 (971)
T ss_pred hhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecce
Confidence 78899999999999999888777777888777777777888999999999999999988777889999999999999999
Q ss_pred EEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCC---ccccccccccCCc
Q psy16810 324 ARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKD---AHNLRVMKFSVSP 400 (755)
Q Consensus 324 v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~---~~~~~~~~~~~~P 400 (755)
|.+++.|++....|+.....|+++++..++++.+|++|+||.++.|.|+++..+++.|+++.+. ...++++.+...|
T Consensus 506 V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~ 585 (971)
T KOG0468|consen 506 VRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEP 585 (971)
T ss_pred eeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcc
Confidence 9999999998888887777899999999999999999999999999999999899999986543 3567788887799
Q ss_pred eEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeec
Q psy16810 401 VVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 480 (755)
Q Consensus 401 v~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi 480 (755)
|++++++|.++++++||.+||++.++.+|.+..+.+|+||++|.|.|||+|++++.+||+-|..|++++++|.|.|+||+
T Consensus 586 VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~ 665 (971)
T KOG0468|consen 586 VVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETV 665 (971)
T ss_pred eEEEEeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEee
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceee
Q psy16810 481 SEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLI 560 (755)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~ 560 (755)
.+++...|+..++++.++++|-+|||..++.++|++|.+.+..+.+..++++..+|+|+.+++++||+|||+.+|||+|+
T Consensus 666 vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~ 745 (971)
T KOG0468|consen 666 VETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILL 745 (971)
T ss_pred ecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceee
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred eccCCc----cchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCc
Q psy16810 561 DCTKGV----QYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPR 636 (755)
Q Consensus 561 ~~~~g~----~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~ 636 (755)
|.+... +.++.++++|.+||||++++||||+||+++|+|.|.|+.+.++..++++||++++||++|+.||+.|.|+
T Consensus 746 dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPr 825 (971)
T KOG0468|consen 746 DDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPR 825 (971)
T ss_pred cCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchh
Confidence 977543 5678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceee
Q psy16810 637 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQV 716 (755)
Q Consensus 637 LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~ 716 (755)
||||+|.|||++|.+++..|+..|++|||+|....+..|++.+.|+|++|+.|+|||.++||-.|+|+|.+++.|+||++
T Consensus 826 LmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~ 905 (971)
T KOG0468|consen 826 LMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRI 905 (971)
T ss_pred hcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC------------CchHHHHHHHHhhcCCCCCCCCccccccc
Q psy16810 717 LPGDPTDPG------------SKPYNVVQETRKRKGLKEGLPDLQSYLDK 754 (755)
Q Consensus 717 v~~~~~~~~------------~~~~~~~~~~r~rkGl~~~~~~~~~~~~~ 754 (755)
|||||++++ ++||+||.++||||||.+++ +.++|||+
T Consensus 906 VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsedv-S~~kffd~ 954 (971)
T KOG0468|consen 906 VPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSEDV-SINKFFDD 954 (971)
T ss_pred CCCCccccccccccCCCCCcchhHHHHHHHhhhhccccccc-ccCcccch
Confidence 999999985 79999999999999999999 99999985
No 6
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=2.3e-126 Score=1120.85 Aligned_cols=697 Identities=41% Similarity=0.685 Sum_probs=593.0
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
||++.++||||+|+||+|||||||+++|++.+|.+++...|+++++|+.++|++|||||+++.+++.|..
T Consensus 13 ~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~---------- 82 (731)
T PRK07560 13 LMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY---------- 82 (731)
T ss_pred HhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe----------
Confidence 5788899999999999999999999999999999987777778899999999999999999999999852
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
++++++|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+..+++
T Consensus 83 ------~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~ 156 (731)
T PRK07560 83 ------EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKEL 156 (731)
T ss_pred ------cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccc
Confidence 12478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhceeeEEEecCCC-------CC-CcceEeehhhhc---ccHH-------HHHHHHHHhCCCCCc
Q psy16810 161 QLDAEDLYQTFQRIVENVNVIIATYSDDS-------GP-MGEVRVFDSIMN---YKKE-------EAESLLSKLGIELKP 222 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~-------~~-~~~~~l~e~v~~---~~~e-------~l~~lle~~~~~l~~ 222 (755)
+..+++++..+..+++.+|.++..|..+. .+ .+++. +..... +..+ ..+.+++.+..
T Consensus 157 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~-~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~---- 231 (731)
T PRK07560 157 KLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVA-FGSALYNWAISVPMMQKTGIKFKDIIDYYEK---- 231 (731)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEe-eeecccccceeHHHHHHhCCCHHHHHHHHhc----
Confidence 99999999988887776654432221100 00 11110 111000 0000 00123332200
Q ss_pred cccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccC
Q psy16810 223 EDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTS 302 (755)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~ 302 (755)
+ ... -+++|+|+.+.|||+|++++|+|.++++.+...++.+...+......+.|++++|++|+|||+.+++
T Consensus 232 ~----~~~-----~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~ 302 (731)
T PRK07560 232 G----KQK-----ELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDP 302 (731)
T ss_pred C----CHH-----HHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcC
Confidence 0 001 1246799999999999999999998877666655554333322234567899999999999999999
Q ss_pred CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeeccee
Q psy16810 303 DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTI 382 (755)
Q Consensus 303 ~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl 382 (755)
+.|. ++|+|||||+|++||.|++.+. +.++ ++++++.++|++..+++++.|||||++.|+++.. .|+||
T Consensus 303 ~~G~-va~~RV~sGtL~~Gd~v~~~~~----~~~~-----~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~-~GdtL 371 (731)
T PRK07560 303 HAGE-VATGRVFSGTLRKGQEVYLVGA----KKKN-----RVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDAR-AGETV 371 (731)
T ss_pred CCCe-EEEEEEEEeEEcCCCEEEEcCC----CCce-----EeheehhhhcCCCceeeeECCCCEEEEEcccccc-cCCEE
Confidence 9997 9999999999999999996543 4343 7899999999999999999999999999998764 47799
Q ss_pred ecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-ECCCCceEEEeechhHHHHHHHHHHhh
Q psy16810 383 TTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IEESGEHIVAGAGELHLEICLKDLEED 461 (755)
Q Consensus 383 ~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLei~~~rL~~~ 461 (755)
++......++++...++|+++++|+|.++.|++||.+||++|++|||+|++. +++|||++|+||||||||++++||+++
T Consensus 372 ~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~ 451 (731)
T PRK07560 372 VSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRD 451 (731)
T ss_pred eCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 8876666677764334899999999999999999999999999999999997 679999999999999999999999999
Q ss_pred ccceeeEeeCcEEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhh---hcccc
Q psy16810 462 HACIPIKKSDPVVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLA---DKYEF 538 (755)
Q Consensus 462 f~~vev~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~ 538 (755)
| ++++++++|+|+|||||.++++. +..+++++|++++++++|++++..+.++.++.....+.+.. ..+. ++++|
T Consensus 452 ~-~vev~~~~p~V~yrETI~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 528 (731)
T PRK07560 452 Y-GIEVVTSEPIVVYRETVRGKSQV-VEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-KILREKLIEAGM 528 (731)
T ss_pred h-CCceEecCCEEEEEEecccCccc-eEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHH-HHHHHhhhhcCC
Confidence 9 99999999999999999988742 33457888999999999999998888887776544333333 3333 37899
Q ss_pred cccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCch
Q psy16810 539 DVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQI 618 (755)
Q Consensus 539 ~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~ 618 (755)
+...++++|+|+ ++|+|+|...|..+++++.++|++||+||+++|||||+||+||+|+|+|+++|.++.++++++|
T Consensus 529 ~~~~~~~i~~~~----~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~ 604 (731)
T PRK07560 529 DKDEAKRVWAIY----NGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQV 604 (731)
T ss_pred chhhhhceeecc----CCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchH
Confidence 999999999993 5799999888888999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHh
Q psy16810 619 IPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLR 698 (755)
Q Consensus 619 ~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lr 698 (755)
++|+++||++|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..++ .++|+|++|++|||||+++||
T Consensus 605 ~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~--~~~I~a~vP~~e~~gy~~~Lr 682 (731)
T PRK07560 605 IPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGD--MAIIEAEAPVAEMFGFAGEIR 682 (731)
T ss_pred HHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCCC--cEEEEEEEehHHhcCCchHHH
Confidence 999999999999999999999999999999999999999999999999999876333 589999999999999999999
Q ss_pred hhcCCcceeEeEecceeecCCCCCCCCCchHHHHHHHHhhcCCCCCCCCcccccc
Q psy16810 699 SNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQETRKRKGLKEGLPDLQSYLD 753 (755)
Q Consensus 699 s~T~G~g~~~~~f~~y~~v~~~~~~~~~~~~~~~~~~r~rkGl~~~~~~~~~~~~ 753 (755)
|+|+|+|+|+|+|+||++||+ ++|+++|.++||||||+++||.+++|+|
T Consensus 683 s~T~G~~~~~~~f~~y~~v~~------~~~~~ii~~~r~rKGl~~~~~~~~~~~~ 731 (731)
T PRK07560 683 SATEGRALWSTEFAGFEPVPD------SLQLDIVRQIRERKGLKPELPKPEDFLS 731 (731)
T ss_pred hhCcCCceEEEEeccceeCCH------HHHHHHHHHHHhhCCCCCCCCChhhhcC
Confidence 999999999999999999996 4699999999999999999999999986
No 7
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=5.8e-122 Score=1080.32 Aligned_cols=696 Identities=37% Similarity=0.599 Sum_probs=586.7
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
||++.+++|||+|+||+|||||||+++|++.+|.+++...|+++++|+.++|++||+||.++.+++.|.
T Consensus 12 ~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~----------- 80 (720)
T TIGR00490 12 LMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE----------- 80 (720)
T ss_pred HhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe-----------
Confidence 578889999999999999999999999999999998877777788999999999999999998886654
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
.+++++++||||||||.+|..++.++++.+|+||+|+|+.+|++.||+.+|+++...++|.++|+||||+..+++
T Consensus 81 -----~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~ 155 (720)
T TIGR00490 81 -----YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINEL 155 (720)
T ss_pred -----ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchh
Confidence 123589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHH------h-CCCCCccccccchHHHH
Q psy16810 161 QLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSK------L-GIELKPEDKEKDGKALL 233 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~------~-~~~l~~~~~~~~~~~l~ 233 (755)
+...++++..|..+++.++..+..+..+. ..+ .+.+...+.+...++.+.+- + +..++.+++. +.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~--~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~---~~~~ 229 (720)
T TIGR00490 156 KLTPQELQERFIKIITEVNKLIKAMAPEE-FRD--KWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIY---KYCK 229 (720)
T ss_pred cCCHHHHHHHHhhhhHHHHhhhhccCCHH-Hhh--ceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHH---HHHH
Confidence 99999999999999988876653321110 000 11233334444444444330 0 0111111111 0000
Q ss_pred H---HHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEE
Q psy16810 234 K---VVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAF 310 (755)
Q Consensus 234 ~---~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~ 310 (755)
. .-+..|+|+.++|||+|++|+|+|.+++..+...++.+...++.....+.|++++|++++|||+..+++.|. ++|
T Consensus 230 ~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~ 308 (720)
T TIGR00490 230 EDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE-VAV 308 (720)
T ss_pred hccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE-EEE
Confidence 0 012368999999999999999999887666655444432222222345679999999999999999999998 999
Q ss_pred EEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCc-c
Q psy16810 311 GRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDA-H 389 (755)
Q Consensus 311 ~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~-~ 389 (755)
+|||||+|++||.|++.++ ++++ +|++++.++|.+.+++++|.|||||++.|++++. +|+||++.... .
T Consensus 309 ~RV~sGtL~~G~~l~~~~~----~~~~-----kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~-~GdtL~~~~~~~~ 378 (720)
T TIGR00490 309 GRLYSGTIRPGMEVYIVDR----KAKA-----RIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAV-AGETICTTVENIT 378 (720)
T ss_pred EEEEeCEEcCCCEEEEcCC----CCee-----EeeEEEEeccCCccCccEECCCCEEEEECccccc-cCceeecCCcccc
Confidence 9999999999999997653 4444 7999999999999999999999999999998763 57799876543 3
Q ss_pred ccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeE
Q psy16810 390 NLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 468 (755)
Q Consensus 390 ~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~ 468 (755)
.++++...++|+++++|+|.+++|+++|.+||++|++|||+|++. +++|||++|+||||||||++++||+++| +++++
T Consensus 379 ~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~-~vev~ 457 (720)
T TIGR00490 379 PFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY-GLDVE 457 (720)
T ss_pred cCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh-CCcee
Confidence 345553234899999999999999999999999999999999997 6899999999999999999999999999 99999
Q ss_pred eeCcEEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCC-CchhhhhhhhhhhcccccccccceEE
Q psy16810 469 KSDPVVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNP-RDDFKIRGRYLADKYEFDVTEARKIW 547 (755)
Q Consensus 469 ~~~p~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 547 (755)
+++|+|+|||||++.++. ...+.+++|++++++++|+++++.+.|+++.+.. ....+.+...+ ..++|+..+++++|
T Consensus 458 ~~~P~V~YrETi~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 535 (720)
T TIGR00490 458 TSPPIVVYRETVTGTSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLL-IEAGMDSEEAARVE 535 (720)
T ss_pred ecCCEEEEEEeccccccc-eEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHH-HhcCCchhhhcCEE
Confidence 999999999999988762 1233477899999999999999988998887643 23445566666 46899999999999
Q ss_pred EeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHH
Q psy16810 548 SFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLY 627 (755)
Q Consensus 548 ~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~ 627 (755)
+|+ ++|+|+|...|..+++++++||++||+||+++||||||||+||+|+|+|+++|.+..++++++|++|+++||+
T Consensus 536 ~~~----~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~ 611 (720)
T TIGR00490 536 EYY----EGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIF 611 (720)
T ss_pred Eec----CCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHH
Confidence 996 4799999888889999999999999999999999999999999999999999987777888999999999999
Q ss_pred HHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCccee
Q psy16810 628 ASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFP 707 (755)
Q Consensus 628 ~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~ 707 (755)
+|+++|+|+||||||+|||+||++++|+|++||++|||+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|
T Consensus 612 ~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~ 689 (720)
T TIGR00490 612 AAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG--DMVTIIAKAPVAEMFGFAGAIRGATSGRCLW 689 (720)
T ss_pred HHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCC--CcEEEEEEEehHHhcCCcHHHHhhCCCCceE
Confidence 99999999999999999999999999999999999999999887432 3589999999999999999999999999999
Q ss_pred EeEecceeecCCCCCCCCCchHHHHHHHHhhcCCCCC
Q psy16810 708 QCVFDHWQVLPGDPTDPGSKPYNVVQETRKRKGLKEG 744 (755)
Q Consensus 708 ~~~f~~y~~v~~~~~~~~~~~~~~~~~~r~rkGl~~~ 744 (755)
+|+|+||+++|++ ++++++.++||||||+++
T Consensus 690 ~~~f~~y~~vp~~------~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 690 STEHAGFELVPQN------LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred EEEecccccCCHH------HHHHHHHHHHhhcCCCCC
Confidence 9999999999965 599999999999999875
No 8
>KOG0465|consensus
Probab=100.00 E-value=1.7e-123 Score=993.70 Aligned_cols=623 Identities=29% Similarity=0.456 Sum_probs=528.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc--ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA--KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
+++|||+|++|.|+||||+++++||++|.+..- ..|....||+++.|+.|||||++++.++.|.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-------------- 102 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-------------- 102 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--------------
Confidence 479999999999999999999999999987742 2233568999999999999999999999996
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc---
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL--- 160 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~--- 160 (755)
++.||+||||||+||..||++||++.||||+|+|++.|+++||+.+|+|+.++++|.|.|||||||.++++
T Consensus 103 ------~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~ 176 (721)
T KOG0465|consen 103 ------DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRT 176 (721)
T ss_pred ------cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred ---------------cCCHHHHHHHHHHHhhhceeeEEEecCCCCC---Ccce-------------EeehhhhcccHHHH
Q psy16810 161 ---------------QLDAEDLYQTFQRIVENVNVIIATYSDDSGP---MGEV-------------RVFDSIMNYKKEEA 209 (755)
Q Consensus 161 ---------------~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~---~~~~-------------~l~e~v~~~~~e~l 209 (755)
+++. .....|.+++|.++....+|..+.+. .+++ .|+|.+++.|+++.
T Consensus 177 l~~i~~kl~~~~a~vqiPi-g~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~ 255 (721)
T KOG0465|consen 177 LNQIRTKLNHKPAVVQIPI-GSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLA 255 (721)
T ss_pred HHHHHhhcCCchheeEccc-cccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 1211 11236788888888888888654421 1122 56677788887777
Q ss_pred HHHHHHhCCCCCccccccchHHHHHH-HHHhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCccc
Q psy16810 210 ESLLSKLGIELKPEDKEKDGKALLKV-VMRTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEA 278 (755)
Q Consensus 210 ~~lle~~~~~l~~~~~~~~~~~l~~~-~~~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 278 (755)
+.+||. ...+.+++. ..++++ +.++++|+ +++|||+|++|||+|.|..++.+.+ ... .++
T Consensus 256 e~fLee--~~ps~~~l~---~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~k--e~~-~~e- 326 (721)
T KOG0465|consen 256 EMFLEE--EEPSAQQLK---AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNK--ETN-SKE- 326 (721)
T ss_pred HHHhcc--CCCCHHHHH---HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhccccccc--CCC-Ccc-
Confidence 777774 334333332 233333 34678883 4899999999999999988776541 111 111
Q ss_pred cccccccCCC-CCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceee
Q psy16810 279 AIGIKNCDPN-APLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEA 357 (755)
Q Consensus 279 ~~~~~~~~~~-~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~ 357 (755)
........+ .||++++||+..+++ |. ++|+|||+|+|++||.|| |.++++++ ++++|++||+...++
T Consensus 327 -kv~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRvYqG~L~kG~~iy----N~rtgKKv-----rv~RL~rmHa~~med 394 (721)
T KOG0465|consen 327 -KVTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRVYQGTLSKGDTIY----NVRTGKKV-----RVGRLVRMHANDMED 394 (721)
T ss_pred -ceEeccCCCCCceeeeEEEeeecCc-cc-eEEEEEeeeeecCCcEEE----ecCCCcee-----EhHHHhHhcccccch
Confidence 122222223 399999999999999 88 999999999999999999 88889887 899999999999999
Q ss_pred eccccCCCeEEeccccceeeecceeecC-CCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-E
Q psy16810 358 IEDVPSGNICGLVGVDQFLVKTGTITTF-KDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-I 435 (755)
Q Consensus 358 v~~a~AGdIvai~gl~~~~~~~gTl~~~-~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~ 435 (755)
|+++.||||||+.|++ + ..|+|+++. .....+..+.+| +||++++|+|.+..|.+++.+||.++.+|||||++. +
T Consensus 395 V~~v~AG~I~alfGid-c-asGDTftd~~~~~~~m~si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d 471 (721)
T KOG0465|consen 395 VNEVLAGDICALFGID-C-ASGDTFTDKQNLALSMESIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLD 471 (721)
T ss_pred hhhhhccceeeeeccc-c-ccCceeccCccccceeeeeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEec
Confidence 9999999999999995 3 457799987 445667788876 999999999999999999999999999999999997 8
Q ss_pred CCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeeec----CCceeEEEEEEEeCCCCCc
Q psy16810 436 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKS----PNKHNRLFMKAAPLPDGLP 511 (755)
Q Consensus 436 ~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~~----~~~~~~v~l~~~Pl~~~~~ 511 (755)
+|+||++|+|||||||||..+||+++| |+++.+++|+|+|||||+.+++..+.||. .+++.++.-.++|+|.+..
T Consensus 472 ~E~kqTvIsGMGELHLEIy~eRl~rEy-~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~ 550 (721)
T KOG0465|consen 472 PEMKQTVISGMGELHLEIYVERLVREY-KVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSN 550 (721)
T ss_pred cccccchhhccchhhHHHHHHHHHHHh-CCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCC
Confidence 999999999999999999999999999 99999999999999999999998887764 6778899999999986532
Q ss_pred cccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccC
Q psy16810 512 EDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSE 591 (755)
Q Consensus 512 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~ 591 (755)
+. +. +.+.+.|...+.++.|++++||.+++++|||.|
T Consensus 551 ~~----------------------~e---------------------F~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~g 587 (721)
T KOG0465|consen 551 EK----------------------FE---------------------FSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIG 587 (721)
T ss_pred ce----------------------EE---------------------EEecccCCCCchhHHHHHHHHHHHHHhcCCccC
Confidence 11 11 112223444566777999999999999999999
Q ss_pred CCeeeEEEEEEeecccc-cccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeee
Q psy16810 592 ENLRGVRFNIHDVTLHA-DAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 670 (755)
Q Consensus 592 ~pv~~v~v~l~d~~~~~-~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~ 670 (755)
+|+.|+++.|.||.+|+ |+... .|+.|++.|+++||.+|+|++|||||+|||++|++++|.|+++|++|+|.|.+.
T Consensus 588 hpl~~~r~~l~Dga~h~vds~el---af~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~ 664 (721)
T KOG0465|consen 588 HPLSNLRIVLQDGAHHPVDSSEL---AFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGI 664 (721)
T ss_pred CcccceEEEEecCCcCcccccHH---HHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecc
Confidence 99999999999999998 44333 388999999999999999999999999999999999999999999999999998
Q ss_pred eecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCCC
Q psy16810 671 MQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPT 722 (755)
Q Consensus 671 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~~ 722 (755)
+..++ .++|.|.+|+++||||+++|||+|+|+|.|+|+|++|+++|.+.+
T Consensus 665 d~~~~--~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq 714 (721)
T KOG0465|consen 665 DSSED--YKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQ 714 (721)
T ss_pred cCCCc--eEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHH
Confidence 86555 589999999999999999999999999999999999999998863
No 9
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=4.1e-111 Score=985.93 Aligned_cols=625 Identities=31% Similarity=0.443 Sum_probs=511.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc--ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA--KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
+++||||+|+||+|||||||+++|++.+|.+... ..+.++++|+.++|++||+|++++..++.|+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~------------- 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-------------
Confidence 5789999999999999999999999999987642 1223568999999999999999999999995
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccC
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQL 162 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~ 162 (755)
++++||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+...++..
T Consensus 74 -------~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~ 146 (693)
T PRK00007 74 -------DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYR 146 (693)
T ss_pred -------CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999998643221
Q ss_pred CHHHHHHHHHH-----------------HhhhceeeEEEecCC-CCC-C--cc-------------eEeehhhhcccHHH
Q psy16810 163 DAEDLYQTFQR-----------------IVENVNVIIATYSDD-SGP-M--GE-------------VRVFDSIMNYKKEE 208 (755)
Q Consensus 163 ~~~~~~~~~~~-----------------ii~~v~~~~~~~~~~-~~~-~--~~-------------~~l~e~v~~~~~e~ 208 (755)
..+++.+.+.. +++.+......|... .+. . .+ -++++.+++.|+++
T Consensus 147 ~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~l 226 (693)
T PRK00007 147 VVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEEL 226 (693)
T ss_pred HHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 11222222111 111111111122110 000 0 00 04567888999999
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCcc
Q psy16810 209 AESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDE 277 (755)
Q Consensus 209 l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~ 277 (755)
+++|++ +..++.+++. ..+.+.++ +.|+|+ .+.|||+|++++|+|.+++..... ...+.
T Consensus 227 le~yle--~~~l~~~~l~---~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~ 296 (693)
T PRK00007 227 MEKYLE--GEELTEEEIK---AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGI-----LPDGE 296 (693)
T ss_pred HHHHhC--cCCCCHHHHH---HHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhccccccc-----CCCcc
Confidence 999998 5667665544 23344444 578884 378999999999999876542200 00111
Q ss_pred ccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceee
Q psy16810 278 AAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEA 357 (755)
Q Consensus 278 ~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~ 357 (755)
.....+.|++++|++|+|||+.++++.|+ ++|+|||||+|++||.|+ |.+.++++ +|++++.++|+++.+
T Consensus 297 ~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~sGtl~~g~~v~----~~~~~~~e-----ki~~l~~~~g~~~~~ 366 (693)
T PRK00007 297 EEEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVYSGVLESGSYVL----NSTKGKKE-----RIGRILQMHANKREE 366 (693)
T ss_pred ccceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEE----eCCCCcee-----EeceeEEeccCCccc
Confidence 12334678999999999999999999998 999999999999999999 54555555 799999999999999
Q ss_pred eccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-EC
Q psy16810 358 IEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IE 436 (755)
Q Consensus 358 v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~ 436 (755)
++++.|||||++.|++++ ..++||++.+.+..++++.++ .|+++++|+|.++.|.+||.+||++|++|||+|++. ++
T Consensus 367 v~~~~aGdI~~i~gl~~~-~~GdtL~~~~~~~~l~~~~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~ 444 (693)
T PRK00007 367 IKEVRAGDIAAAVGLKDT-TTGDTLCDEKNPIILESMEFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDE 444 (693)
T ss_pred ccccCCCcEEEEeCCccC-CcCCEeeCCCCccccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 999999999999999885 346699887766667777775 899999999999999999999999999999999997 68
Q ss_pred CCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeee----cCCceeEEEEEEEeCCCCCcc
Q psy16810 437 ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSK----SPNKHNRLFMKAAPLPDGLPE 512 (755)
Q Consensus 437 etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~----~~~~~~~v~l~~~Pl~~~~~~ 512 (755)
+|||++|+||||||||+|++||+++| ++++++++|+|+|||||++.++....++ ..++|..++++++|++++..
T Consensus 445 etge~~l~g~GelHLei~~~rL~~~~-~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~- 522 (693)
T PRK00007 445 ETGQTIIAGMGELHLDIIVDRMKREF-KVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKG- 522 (693)
T ss_pred CCCCEEEEEecHHhHHHHHHHHHHHh-CCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCC-
Confidence 99999999999999999999999999 9999999999999999998866433332 23456789999999875421
Q ss_pred ccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCC
Q psy16810 513 DIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEE 592 (755)
Q Consensus 513 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~ 592 (755)
+.|. +...|....++++++|++||+||+++|||||+
T Consensus 523 -----------------------~~f~---------------------~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~ 558 (693)
T PRK00007 523 -----------------------YEFV---------------------NKIVGGVIPKEYIPAVDKGIQEAMESGVLAGY 558 (693)
T ss_pred -----------------------cEEe---------------------ecccCCcCcHHHHHHHHHHHHHHHhcCCcCCC
Confidence 1111 11223345678889999999999999999999
Q ss_pred CeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeee
Q psy16810 593 NLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQ 672 (755)
Q Consensus 593 pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~ 672 (755)
||+||+|+|+|+++|+.. .+.++|..|+++||++|+++|+|+||||||+|||+||++++|+||++|++|||+|.++++
T Consensus 559 pv~~v~v~l~d~~~~~~d--s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~ 636 (693)
T PRK00007 559 PVVDVKVTLFDGSYHDVD--SSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMED 636 (693)
T ss_pred ceeeEEEEEEecccCCCC--CcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccc
Confidence 999999999999999722 234679999999999999999999999999999999999999999999999999999886
Q ss_pred cCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCC
Q psy16810 673 VAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 721 (755)
Q Consensus 673 ~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~ 721 (755)
.++ .+.|+|.+|++|||||+++|||+|+|+|+|+++|+||++||++.
T Consensus 637 ~~~--~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 683 (693)
T PRK00007 637 RGG--AKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNV 683 (693)
T ss_pred cCC--cEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHH
Confidence 544 47999999999999999999999999999999999999999764
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-110 Score=983.34 Aligned_cols=621 Identities=30% Similarity=0.439 Sum_probs=514.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc--ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA--KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
++++||||+|+||+|||||||+++|++.+|.+.+. ..+.++++|+.++|++||+|++++..++.|+
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------ 71 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------ 71 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC------------
Confidence 35789999999999999999999999999987642 1223568999999999999999999999995
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhccc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~ 161 (755)
+++++|||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+...++
T Consensus 72 --------~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~- 142 (691)
T PRK12739 72 --------GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADF- 142 (691)
T ss_pred --------CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH-
Confidence 89999999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCHHHHHHHHHHHhhh---------------------ceeeEEEecCC-CCC-C--cc-------------eEeehhhhc
Q psy16810 162 LDAEDLYQTFQRIVEN---------------------VNVIIATYSDD-SGP-M--GE-------------VRVFDSIMN 203 (755)
Q Consensus 162 ~~~~~~~~~~~~ii~~---------------------v~~~~~~~~~~-~~~-~--~~-------------~~l~e~v~~ 203 (755)
.+....+...+.. +......|... .+. . .+ .++++.+++
T Consensus 143 ---~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 219 (691)
T PRK12739 143 ---FRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAE 219 (691)
T ss_pred ---HHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 2233333332221 11111112111 000 0 00 055678889
Q ss_pred ccHHHHHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCC
Q psy16810 204 YKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEG 272 (755)
Q Consensus 204 ~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~ 272 (755)
.|++.+++|++. ..++.+++. ..+.+.+. +.|+|+ .+.|||+|++++|+|.+++..+......
T Consensus 220 ~dd~lle~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~- 293 (691)
T PRK12739 220 VDEELMEKYLEG--EEITEEEIK---AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDT- 293 (691)
T ss_pred cCHHHHHHHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCC-
Confidence 999999999974 455554433 23344444 578884 3899999999999998766544321110
Q ss_pred CCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEecc
Q psy16810 273 PHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMG 352 (755)
Q Consensus 273 ~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g 352 (755)
. ....+.|++++||+++|||++++++.|+ ++|+|||||+|++||.|+ |.++++++ ++++++.++|
T Consensus 294 ----~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGtL~~g~~v~----~~~~~~~~-----~v~~l~~~~g 358 (691)
T PRK12739 294 ----E-EEIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYSGVLESGSYVL----NTTKGKKE-----RIGRLLQMHA 358 (691)
T ss_pred ----C-cceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEeeeEEcCCCEEE----eCCCCceE-----EecceEEEec
Confidence 1 1235678999999999999999999998 999999999999999998 55556555 7999999999
Q ss_pred CceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceE
Q psy16810 353 RYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQ 432 (755)
Q Consensus 353 ~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~ 432 (755)
++..+++++.|||||+|.|+++. ..++||++...+..++++.++ +|+++++|+|.+++|++||.+||++|++|||+|+
T Consensus 359 ~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~~l~~~~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~ 436 (691)
T PRK12739 359 NKREEIKEVYAGDIAAAVGLKDT-TTGDTLCDEKAPIILESMEFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFR 436 (691)
T ss_pred CCcccccccCCCCEEEEeCCCcc-cCCCEEeCCCCccccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEE
Confidence 99999999999999999999985 345599887766677777775 8999999999999999999999999999999999
Q ss_pred EE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeeec----CCceeEEEEEEEeCC
Q psy16810 433 CI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKS----PNKHNRLFMKAAPLP 507 (755)
Q Consensus 433 v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~~----~~~~~~v~l~~~Pl~ 507 (755)
+. +++|||++|+||||||||+|++||+++| ++++++++|+|+|||||.+.++....++. .+++..++++++|++
T Consensus 437 v~~~~etge~il~g~GelHLei~~~rL~~~f-~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~ 515 (691)
T PRK12739 437 VETDEETGQTIISGMGELHLDIIVDRMKREF-KVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNE 515 (691)
T ss_pred EEEcCCCCCEEEEEecHHHHHHHHHHHHHHh-CCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECC
Confidence 97 6899999999999999999999999999 99999999999999999988765444432 356778999999987
Q ss_pred CCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcC
Q psy16810 508 DGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEG 587 (755)
Q Consensus 508 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~G 587 (755)
++.. +.+.+...|..++++++++|++||+||+++|
T Consensus 516 ~~~~---------------------------------------------~~~~~~i~~g~~~~~~~~av~~G~~~a~~~G 550 (691)
T PRK12739 516 EGKG---------------------------------------------FEFVNKIVGGVIPKEYIPAVEKGLEEAMKNG 550 (691)
T ss_pred CCCC---------------------------------------------cEEEEeccCCcCcHHHHHHHHHHHHHHHhcC
Confidence 5421 1122222344567889999999999999999
Q ss_pred CccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhccccee
Q psy16810 588 VLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 667 (755)
Q Consensus 588 pl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I 667 (755)
||||+||+||+|+|+|+++|+..+ +.++|++|+++||++|+++|+|+||||||+|||+||++++|+||++|++|||+|
T Consensus 551 pL~g~pv~~v~v~l~d~~~h~~~s--~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i 628 (691)
T PRK12739 551 VLAGYPMVDVKATLYDGSYHDVDS--SELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQI 628 (691)
T ss_pred CcCCCceeeEEEEEEEeccCCCCC--cHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeE
Confidence 999999999999999999997332 346789999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCC
Q psy16810 668 FEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 721 (755)
Q Consensus 668 ~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~ 721 (755)
+++++.+++ +.|+|.+|++|+|||+++||++|+|+|+|+++|+||+++|++.
T Consensus 629 ~~~~~~~~~--~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~ 680 (691)
T PRK12739 629 QGMEARGGA--QIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNI 680 (691)
T ss_pred ECccccCCc--EEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHH
Confidence 998876664 6899999999999999999999999999999999999999754
No 11
>KOG0467|consensus
Probab=100.00 E-value=1.2e-110 Score=913.28 Aligned_cols=714 Identities=40% Similarity=0.674 Sum_probs=590.6
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
+++.+.|||||+++|+|||||||+++|+..+|.|+++.+|+.|++|++++|+.||||++++.+++..
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~------------- 69 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH------------- 69 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-------------
Confidence 4567899999999999999999999999999999999999999999999999999999999999765
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhccc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~ 161 (755)
++|.+||||+|||+||.+++.+|.+.+|+|+++||+++|++.||..++|||+..++.+|+|||||||...+++
T Consensus 70 -------~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~ 142 (887)
T KOG0467|consen 70 -------KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELK 142 (887)
T ss_pred -------CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHh
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhceeeEEEecCCC-----------------CC-Ccce----------------------------
Q psy16810 162 LDAEDLYQTFQRIVENVNVIIATYSDDS-----------------GP-MGEV---------------------------- 195 (755)
Q Consensus 162 ~~~~~~~~~~~~ii~~v~~~~~~~~~~~-----------------~~-~~~~---------------------------- 195 (755)
+++.++|.++.++++.+|..+..|..+. ++ .+++
T Consensus 143 lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~ 222 (887)
T KOG0467|consen 143 LSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKD 222 (887)
T ss_pred cChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhh
Confidence 9999999999999999987654221100 00 1111
Q ss_pred ------------------------------------------Eeeh-hhhcccHHHHHHHHHHhCCCCCccccccchHHH
Q psy16810 196 ------------------------------------------RVFD-SIMNYKKEEAESLLSKLGIELKPEDKEKDGKAL 232 (755)
Q Consensus 196 ------------------------------------------~l~e-~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l 232 (755)
.+|+ .+.+.|.+.+++....+++.+.+.++. .+
T Consensus 223 ~al~k~lwgd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~l 298 (887)
T KOG0467|consen 223 AALLKFLWGDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NL 298 (887)
T ss_pred hhhhhhhccceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HH
Confidence 2223 233445667777777778777666554 68
Q ss_pred HHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCC---CccccccccccCCCCCeEEEEEeeeccCCCC----
Q psy16810 233 LKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPH---DDEAAIGIKNCDPNAPLMMYVSKMVPTSDKG---- 305 (755)
Q Consensus 233 ~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G---- 305 (755)
+.+++++|+|..++.+-+++.++|+|.+.+..+...+...+. +.......+.|++++|..++|.|++..+.+-
T Consensus 299 l~~im~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~ 378 (887)
T KOG0467|consen 299 LDAIMSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQS 378 (887)
T ss_pred HHHHHHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchh
Confidence 889999999999999999999999999999888776654321 1112344566899999999999998765332
Q ss_pred ceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecC
Q psy16810 306 RFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTF 385 (755)
Q Consensus 306 ~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~ 385 (755)
++++++||||||++.||.||+.++ .+...+.+...+|.++|+++|++..+.+++++|+++++.| .....+.+|+|+.
T Consensus 379 ~l~~~ari~sgTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~ 455 (887)
T KOG0467|consen 379 RLLAFARIFSGTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSK 455 (887)
T ss_pred hheeeeeeccCceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceeccc
Confidence 257999999999999999999876 3333444555689999999999999999999999999999 6677788999987
Q ss_pred CCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhHHHHHHHHHHhhccce
Q psy16810 386 KDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELHLEICLKDLEEDHACI 465 (755)
Q Consensus 386 ~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~f~~v 465 (755)
..+.++....|...|.++++|+|.++.++++|.++|+.|...||++++..+++||+++...||+|||.|+.+|++ |+++
T Consensus 456 ~~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-fa~i 534 (887)
T KOG0467|consen 456 VPCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-FAKI 534 (887)
T ss_pred CCCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-hhce
Confidence 554444446666789999999999999999999999999999999999989999999999999999999999999 9999
Q ss_pred eeEeeCcEEEEEeeccccccce-------eeeecCCceeEEEEEEEeCCCCCccccccCCCCCCc-------------hh
Q psy16810 466 PIKKSDPVVSYRETVSEESDQV-------CLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRD-------------DF 525 (755)
Q Consensus 466 ev~~~~p~V~yrETi~~~~~~~-------~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~-------------~~ 525 (755)
++++++|.|+||||+.+.+... .....+.+..++.+++.|++..+.+.+.++.....+ ..
T Consensus 535 ~i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~ 614 (887)
T KOG0467|consen 535 EISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQ 614 (887)
T ss_pred EEEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccc
Confidence 9999999999999996654321 001112233478888899887666655443221110 00
Q ss_pred h-------hhhhhhhhccccc------ccccceEEEeCcCCCCCceeeeccCCcc--------chHHHHHHHHHHHHHHH
Q psy16810 526 K-------IRGRYLADKYEFD------VTEARKIWSFGPDGTGPNLLIDCTKGVQ--------YLNEIKDSVVAGFQWAA 584 (755)
Q Consensus 526 ~-------~~~~~~~~~~~~~------~~~~~~i~~~gp~~~~~~~l~~~~~g~~--------~~~~~~~~i~~G~~~a~ 584 (755)
+ .....+...+.+. ..+..++|+|||.+.|||+|++...... |...+..++..||+.++
T Consensus 615 k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~ 694 (887)
T KOG0467|consen 615 KGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLAT 694 (887)
T ss_pred cccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhh
Confidence 0 0000111111100 1122678999999999999998654332 33336689999999999
Q ss_pred HcCCccCCCeeeEEEEEEeecccc-cccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcc
Q psy16810 585 KEGVLSEENLRGVRFNIHDVTLHA-DAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 663 (755)
Q Consensus 585 ~~Gpl~~~pv~~v~v~l~d~~~~~-~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~R 663 (755)
..||||.||++|++|.+..+.... ++.....||++.|++.+||+|++...|||+.|||.|+|++..+++|+||.+|++|
T Consensus 695 ~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR 774 (887)
T KOG0467|consen 695 SSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKR 774 (887)
T ss_pred ccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhh
Confidence 999999999999999999855433 2222334899999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCCCCCC----------------Cc
Q psy16810 664 RGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPTDPG----------------SK 727 (755)
Q Consensus 664 rg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~~~~~----------------~~ 727 (755)
+|+|+++++.+|+++|.|+|.+|+.|+|||+.++|..|+|.|+.++.|||||.++.||||.+ |+
T Consensus 775 ~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~ 854 (887)
T KOG0467|consen 775 HGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENI 854 (887)
T ss_pred cchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999964 99
Q ss_pred hHHHHHHHHhhcCCCC
Q psy16810 728 PYNVVQETRKRKGLKE 743 (755)
Q Consensus 728 ~~~~~~~~r~rkGl~~ 743 (755)
||.||+++||||||..
T Consensus 855 ArkYMdaVRRRKGLfV 870 (887)
T KOG0467|consen 855 ARKYMDAVRRRKGLFV 870 (887)
T ss_pred HHHHHHHHHhhcCCch
Confidence 9999999999999963
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=5.5e-108 Score=961.31 Aligned_cols=619 Identities=29% Similarity=0.431 Sum_probs=509.7
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
+.++||||+|+||+|||||||+++|++.+|.+.+. ..| ++++|+.+.|++||+|++++..++.|+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g-~~~~D~~~~e~~rgiti~~~~~~~~~~----------- 73 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG-AATMDWMEQEKERGITITSAATTVFWK----------- 73 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC-ccccCCCHHHHhcCCCEecceEEEEEC-----------
Confidence 34679999999999999999999999999987642 223 368999999999999999999999995
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
+++++|||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+++|+||+|+..+++
T Consensus 74 ---------~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~ 144 (689)
T TIGR00484 74 ---------GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANF 144 (689)
T ss_pred ---------CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred cCCHHHHHHHHHHHhh---------------------hceeeEEEecCCCCC---Ccc-------------eEeehhhhc
Q psy16810 161 QLDAEDLYQTFQRIVE---------------------NVNVIIATYSDDSGP---MGE-------------VRVFDSIMN 203 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~---------------------~v~~~~~~~~~~~~~---~~~-------------~~l~e~v~~ 203 (755)
......+...+. .+......|..+.+. ... .++.|++++
T Consensus 145 ----~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 220 (689)
T TIGR00484 145 ----LRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAE 220 (689)
T ss_pred ----HHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 233333333222 111111222211110 000 045678899
Q ss_pred ccHHHHHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCC
Q psy16810 204 YKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEG 272 (755)
Q Consensus 204 ~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~ 272 (755)
.|++++++|++ |..++.+++. ..+.++++ +.++|+ .+.|||+|++++|+|.+++.....
T Consensus 221 ~dd~lle~yle--~~~~~~~~l~---~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~----- 290 (689)
T TIGR00484 221 FDEELMEKYLE--GEELTIEEIK---NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGI----- 290 (689)
T ss_pred cCHHHHHHHhC--CCCCCHHHHH---HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhccccccc-----
Confidence 99999999998 4556555433 23444443 566773 389999999999999765432210
Q ss_pred CCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEecc
Q psy16810 273 PHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMG 352 (755)
Q Consensus 273 ~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g 352 (755)
..+......+.|++++||+|+|||+.++++.|+ ++|+|||||+|+.||.|+ |.+.++++ ++++++.++|
T Consensus 291 -~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~RV~sGtL~~g~~v~----~~~~~~~~-----~i~~l~~~~g 359 (689)
T TIGR00484 291 -DPDTEKEIERKASDDEPFSALAFKVATDPFVGQ-LTFVRVYSGVLKSGSYVK----NSRKNKKE-----RVGRLVKMHA 359 (689)
T ss_pred -CCCCCceeeecCCCCCceEEEEEEeeecCCCCe-EEEEEEEEeEEcCCCEEE----eCCCCceE-----EecceEEeec
Confidence 001111234578999999999999999999997 999999999999999999 55555555 7899999999
Q ss_pred CceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceE
Q psy16810 353 RYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQ 432 (755)
Q Consensus 353 ~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~ 432 (755)
++..+++++.|||||++.|++++ .+++||++......++++.++ +|+++++|+|.++.|.+||.+||++|++|||+|+
T Consensus 360 ~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~~~~~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~ 437 (689)
T TIGR00484 360 NNREEIKEVRAGDICAAIGLKDT-TTGDTLCDPKIDVILERMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFR 437 (689)
T ss_pred CCcccccccCCCCEEEEcCCCCC-CCCCEEeCCCCccccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEE
Confidence 99999999999999999999876 457799987766667777775 8999999999999999999999999999999999
Q ss_pred EE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeee----cCCceeEEEEEEEeCC
Q psy16810 433 CI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSK----SPNKHNRLFMKAAPLP 507 (755)
Q Consensus 433 v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~----~~~~~~~v~l~~~Pl~ 507 (755)
+. +++|||++|+||||||||||++||+++| ++++++++|+|+|||||.+.++....++ ..++|+.++++++|++
T Consensus 438 v~~~~etge~il~g~GelHLei~~~~L~~~~-~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~ 516 (689)
T TIGR00484 438 TFTDPETGQTIIAGMGELHLDIIVDRMKREF-KVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLE 516 (689)
T ss_pred EEECCCCCCEEEEEeeHHHHHHHHHHHHHHh-CCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECC
Confidence 97 6899999999999999999999999999 9999999999999999998876533333 2345779999999987
Q ss_pred CCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcC
Q psy16810 508 DGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEG 587 (755)
Q Consensus 508 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~G 587 (755)
++- +.|. +...+....+++.++|++||+||+++|
T Consensus 517 ~~g-------------------------~~~~---------------------~~i~~g~~~~~~~~av~~g~~~a~~~G 550 (689)
T TIGR00484 517 PKG-------------------------YEFV---------------------NEIKGGVIPREYIPAVDKGLQEAMESG 550 (689)
T ss_pred CCC-------------------------cEEE---------------------EeccCCcCCHHHHHHHHHHHHHHHhcC
Confidence 531 1111 001122345678899999999999999
Q ss_pred CccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhccccee
Q psy16810 588 VLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 667 (755)
Q Consensus 588 pl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I 667 (755)
||||+||+||+|+|+|+++|+..+ +.++|++|+++||++|+++|+|+||||||+|||+||++++|+|+++|++|||+|
T Consensus 551 pL~g~pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i 628 (689)
T TIGR00484 551 PLAGYPVVDIKATLFDGSYHDVDS--SEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGII 628 (689)
T ss_pred CcCCCceeeEEEEEEEeecCCCCC--CHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeE
Confidence 999999999999999999996322 346788999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCC
Q psy16810 668 FEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 721 (755)
Q Consensus 668 ~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~ 721 (755)
++++..++ .+.|+|++|++|+|||+++||++|+|+|+|+++|+||++||+++
T Consensus 629 ~~~~~~~~--~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 680 (689)
T TIGR00484 629 EGMEARGN--VQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSV 680 (689)
T ss_pred ecccccCC--cEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHH
Confidence 98876443 58999999999999999999999999999999999999999875
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=5e-106 Score=947.63 Aligned_cols=624 Identities=31% Similarity=0.460 Sum_probs=515.6
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
..+++|||+|+||+|+|||||+++|++.+|.+... ..| ++++|+.+.|++||+|+.++..++.|+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~-~~~~d~~~~e~~r~~ti~~~~~~~~~~----------- 71 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG-TTVTDWMPQEQERGITIESAATSCDWD----------- 71 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC-cccCCCCHHHHhcCCCcccceEEEEEC-----------
Confidence 34689999999999999999999999999987642 223 467999999999999999999999995
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
+++++|||||||.||..++.++++.+|++++|+|+++|++.|++.+|+++...++|+++|+||+|+.++++
T Consensus 72 ---------~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~ 142 (687)
T PRK13351 72 ---------NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADL 142 (687)
T ss_pred ---------CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999988655
Q ss_pred cCCHHHHHHHHHHHhhhc-----------------eeeEEEecCCC--CC--Ccce-------------EeehhhhcccH
Q psy16810 161 QLDAEDLYQTFQRIVENV-----------------NVIIATYSDDS--GP--MGEV-------------RVFDSIMNYKK 206 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v-----------------~~~~~~~~~~~--~~--~~~~-------------~l~e~v~~~~~ 206 (755)
....++++..+..-...+ ......|.... +. ..++ ++++.+++.|+
T Consensus 143 ~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (687)
T PRK13351 143 FKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDD 222 (687)
T ss_pred HHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCH
Confidence 444444443333211111 11111221110 00 0000 45678889999
Q ss_pred HHHHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCC
Q psy16810 207 EEAESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHD 275 (755)
Q Consensus 207 e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~ 275 (755)
+.++++++ +..++.+++. ..+.+.+. +.|+|+ .+.|||+|++++|+|.+++..+... +
T Consensus 223 ~lle~~l~--~~~l~~~~l~---~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~---~--- 291 (687)
T PRK13351 223 ELLELYLE--GEELSAEQLR---APLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK---D--- 291 (687)
T ss_pred HHHHHHhC--CCCCCHHHHH---HHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC---C---
Confidence 99999997 5667766543 23344433 678884 3689999999999998665433221 0
Q ss_pred ccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCce
Q psy16810 276 DEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYV 355 (755)
Q Consensus 276 ~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~ 355 (755)
+. ....+.|++++|++++|||++++++.|+ ++|+|||||+|++||+|++.+ +++.+ ++++++.++|.+.
T Consensus 292 ~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGtl~~g~~v~~~~----~~~~~-----~i~~i~~~~g~~~ 360 (687)
T PRK13351 292 NG-KPVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVYSGTLRAGSQLYNGT----GGKRE-----KVGRLFRLQGNKR 360 (687)
T ss_pred CC-CceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEeEEEEcCCCEEEeCC----CCCce-----EeeeEEEEccCCe
Confidence 00 0123568999999999999999999998 899999999999999999654 34444 7899999999999
Q ss_pred eeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-
Q psy16810 356 EAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI- 434 (755)
Q Consensus 356 ~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~- 434 (755)
.+++++.||||+++.|+++.. .++||++......++++.++ +|+++++|+|.+++|.++|.+||++|++|||+|++.
T Consensus 361 ~~v~~~~aGdI~~i~gl~~~~-~gdtl~~~~~~~~~~~~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 438 (687)
T PRK13351 361 EEVDRAKAGDIVAVAGLKELE-TGDTLHDSADPVLLELLTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEE 438 (687)
T ss_pred eECCccCCCCEEEEECcccCc-cCCEEeCCCCccccCCCCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999999999999863 47799887665566666664 899999999999999999999999999999999997
Q ss_pred ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeee----cCCceeEEEEEEEeCCCCC
Q psy16810 435 IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSK----SPNKHNRLFMKAAPLPDGL 510 (755)
Q Consensus 435 ~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~----~~~~~~~v~l~~~Pl~~~~ 510 (755)
++||||++|+||||||||++++||+++| ++++++++|+|+|||||++.++....++ ..+++.+++++++|++++.
T Consensus 439 ~~etge~ii~g~GelHLei~~~rL~~~~-~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~ 517 (687)
T PRK13351 439 DEETGQTILSGMGELHLEVALERLRREF-KLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGA 517 (687)
T ss_pred CCCCCCEEEEEecHHHHHHHHHHHHHHh-CCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCC
Confidence 6799999999999999999999999999 8999999999999999998876544333 2345679999999987542
Q ss_pred ccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCcc
Q psy16810 511 PEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLS 590 (755)
Q Consensus 511 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~ 590 (755)
. +++.+...|..+.++++++|++||+||+++||||
T Consensus 518 g---------------------------------------------~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~ 552 (687)
T PRK13351 518 G---------------------------------------------FIFVSKVVGGAIPEELIPAVEKGIREALASGPLA 552 (687)
T ss_pred C---------------------------------------------cEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 1 2222222334567889999999999999999999
Q ss_pred CCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeee
Q psy16810 591 EENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 670 (755)
Q Consensus 591 ~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~ 670 (755)
|+||+||+|+|+|+++|.+.+ +.++|++|+++||++|+++|+|+||||||+|||+||++++|+|+++|++|||+|+++
T Consensus 553 ~~pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~ 630 (687)
T PRK13351 553 GYPVTDLRVTVLDGKYHPVDS--SESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGT 630 (687)
T ss_pred CCceeeEEEEEEEecCCCCCC--CHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEece
Confidence 999999999999999997543 368899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCC
Q psy16810 671 MQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 721 (755)
Q Consensus 671 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~ 721 (755)
+..+++. +.|+|.+|++|||||+++|||+|+|+|+|+|+|+||++||+++
T Consensus 631 ~~~~~~~-~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 680 (687)
T PRK13351 631 EPRGDGE-VLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAV 680 (687)
T ss_pred ecCCCcE-EEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHH
Confidence 8766653 3499999999999999999999999999999999999999876
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=5.3e-99 Score=887.14 Aligned_cols=608 Identities=32% Similarity=0.483 Sum_probs=498.3
Q ss_pred EeCCCCChHHHHHHHHHhcCCcccc--ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCCe
Q psy16810 14 IAHVDHGKSTLTDSLVSKAGIIAGA--KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGF 91 (755)
Q Consensus 14 iGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (755)
+||+|||||||+++|++.+|.+... ..+..+++|+.+.|++||+|+.++..++.|. ++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--------------------~~ 60 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--------------------GH 60 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--------------------CE
Confidence 6999999999999999999988752 1122368999999999999999999999995 89
Q ss_pred EEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHHHHHHH
Q psy16810 92 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDLYQTF 171 (755)
Q Consensus 92 ~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~~~~~~ 171 (755)
.++|||||||.+|..++.++++.+|++++|+|++.|...++..+|+++...++|+++|+||+|+...+ ..+..+.+
T Consensus 61 ~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~----~~~~~~~l 136 (668)
T PRK12740 61 KINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGAD----FFRVLAQL 136 (668)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC----HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997643 23333344
Q ss_pred HHHhhh---------------------ceeeEEEecCCCCCCc--c-------------eEeehhhhcccHHHHHHHHHH
Q psy16810 172 QRIVEN---------------------VNVIIATYSDDSGPMG--E-------------VRVFDSIMNYKKEEAESLLSK 215 (755)
Q Consensus 172 ~~ii~~---------------------v~~~~~~~~~~~~~~~--~-------------~~l~e~v~~~~~e~l~~lle~ 215 (755)
...+.. +....+.|. +..... . -.+++.+++.|++.+++|++.
T Consensus 137 ~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~ 215 (668)
T PRK12740 137 QEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYD-EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEG 215 (668)
T ss_pred HHHHCCCceeEEecccCCCCceEEEECccceEEEec-CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC
Confidence 333221 111111121 100000 0 034566788888888888874
Q ss_pred hCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccc
Q psy16810 216 LGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKN 284 (755)
Q Consensus 216 ~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (755)
..++.+++.. .+.+.+. +.|+|+ .+.|||+|++++|+|.++++.. +.. ........
T Consensus 216 --~~l~~~~~~~---~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~------~~~--~~~~~~~~ 282 (668)
T PRK12740 216 --EELSEEEIKA---GLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVD------GED--GEEGAELA 282 (668)
T ss_pred --CCCCHHHHHH---HHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccc------CCC--Cccccccc
Confidence 4555554432 2333333 678885 4789999999999997654321 100 01123456
Q ss_pred cCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCC
Q psy16810 285 CDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSG 364 (755)
Q Consensus 285 ~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AG 364 (755)
|++++|++|+|||++++++.|. ++|+|||||+|++||+|++.+ +++++ ++++++.++|++.++++++.||
T Consensus 283 ~~~~~~l~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v~~~~----~~~~~-----~i~~l~~l~g~~~~~v~~~~aG 352 (668)
T PRK12740 283 PDPDGPLVALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTLYNSG----TGKKE-----RVGRLYRMHGKQREEVDEAVAG 352 (668)
T ss_pred cCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEeCC----CCCcE-----EecceeeecCCCccccCccCCC
Confidence 8999999999999999999997 999999999999999999654 23343 7899999999999999999999
Q ss_pred CeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-ECCCCceEE
Q psy16810 365 NICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IEESGEHIV 443 (755)
Q Consensus 365 dIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il 443 (755)
|||++.|++.. .+++||++......++++.++ +|+++++|+|.+++|.++|.+||++|++|||+|++. +++|||++|
T Consensus 353 dI~~i~gl~~~-~~Gdtl~~~~~~~~~~~~~~~-~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l 430 (668)
T PRK12740 353 DIVAVAKLKDA-ATGDTLCDKGDPILLEPMEFP-EPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTIL 430 (668)
T ss_pred CEEEEeccCcc-CCCCEEeCCCCccccCCCCCC-CcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEE
Confidence 99999999864 456799877666677777776 899999999999999999999999999999999998 579999999
Q ss_pred EeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeeec----CCceeEEEEEEEeCCCCCccccccCCC
Q psy16810 444 AGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKS----PNKHNRLFMKAAPLPDGLPEDIDKGEV 519 (755)
Q Consensus 444 ~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~~----~~~~~~v~l~~~Pl~~~~~~~i~~~~~ 519 (755)
+||||||||++++||+++| ++++.+++|+|+|||||.++++....+.. .+++.+++++++|++++..
T Consensus 431 ~g~GelhLei~~~~L~~~~-~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~-------- 501 (668)
T PRK12740 431 SGMGELHLDVALERLKREY-GVEVETGPPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEG-------- 501 (668)
T ss_pred EEecHHHHHHHHHHHHHHh-CceeEecCCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCc--------
Confidence 9999999999999999999 99999999999999999988665433332 3355689999999986421
Q ss_pred CCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEE
Q psy16810 520 NPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRF 599 (755)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v 599 (755)
+.|. +...+..+.+++.++|++||++|+++|||||+||+||+|
T Consensus 502 ----------------~~f~---------------------~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v 544 (668)
T PRK12740 502 ----------------FEFV---------------------DKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKV 544 (668)
T ss_pred ----------------eEEe---------------------ecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEE
Confidence 1111 111223456788899999999999999999999999999
Q ss_pred EEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccE
Q psy16810 600 NIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMF 679 (755)
Q Consensus 600 ~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~ 679 (755)
+|+|+.+|... .+.++|++|+++||++|+++|+|+||||||+|||++|++++|+|+++|++|||+|++++..+++ +
T Consensus 545 ~l~~~~~~~~~--s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~ 620 (668)
T PRK12740 545 TLTDGSYHSVD--SSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGG--D 620 (668)
T ss_pred EEEecccccCC--CCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCC--E
Confidence 99999998632 3456799999999999999999999999999999999999999999999999999998876553 7
Q ss_pred EEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCC
Q psy16810 680 VVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 721 (755)
Q Consensus 680 ~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~ 721 (755)
.|+|++|++|||||+++||++|+|+|+|++.|+||+++|+++
T Consensus 621 ~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~ 662 (668)
T PRK12740 621 VVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNV 662 (668)
T ss_pred EEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCCHHH
Confidence 999999999999999999999999999999999999999765
No 15
>KOG0464|consensus
Probab=100.00 E-value=1.6e-95 Score=743.42 Aligned_cols=619 Identities=26% Similarity=0.367 Sum_probs=479.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
.++|||+|++|+|+||||.+++++|.+|.+... ..|. +++|++..|++|||||+++++.|.|+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgd-tvtdfla~erergitiqsaav~fdwk------------- 100 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGD-TVTDFLAIERERGITIQSAAVNFDWK------------- 100 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCc-hHHHHHHHHHhcCceeeeeeeecccc-------------
Confidence 468999999999999999999999999998852 4454 57999999999999999999999995
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccC
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQL 162 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~ 162 (755)
+|+||+||||||+||.-|+++++|+.||++.|+|++.|+++||.++|+|+.++++|.++|+||||+..++|..
T Consensus 101 -------g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~ 173 (753)
T KOG0464|consen 101 -------GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFEN 173 (753)
T ss_pred -------cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877765
Q ss_pred CHHHHHHHHHH------------------HhhhceeeEEEe--cCCCC-CCcce-------------------Eeehhhh
Q psy16810 163 DAEDLYQTFQR------------------IVENVNVIIATY--SDDSG-PMGEV-------------------RVFDSIM 202 (755)
Q Consensus 163 ~~~~~~~~~~~------------------ii~~v~~~~~~~--~~~~~-~~~~~-------------------~l~e~v~ 202 (755)
..+.+.+++.. .++.+......| +.+.+ .+.+- .+.++++
T Consensus 174 avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qla 253 (753)
T KOG0464|consen 174 AVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLA 253 (753)
T ss_pred HHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHh
Confidence 55544443321 111111000111 11111 01110 3445556
Q ss_pred cccHHHHHHHHHHhCCCC---CccccccchHHHHHH-HHHhccC----------ChHHHHHHHHhcCCCCccccccchhh
Q psy16810 203 NYKKEEAESLLSKLGIEL---KPEDKEKDGKALLKV-VMRTWLP----------AGEALLQMIAIHLPSPVVAQKYRMEM 268 (755)
Q Consensus 203 ~~~~e~l~~lle~~~~~l---~~~~~~~~~~~l~~~-~~~~~~p----------~g~~LLd~i~~~lPsP~~~~~~~~~~ 268 (755)
+.+++.-..+++.+.++. +.+++. ..+... ...+..| +.++|||++.-|+|||.++.. .+..
T Consensus 254 d~~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeerny-eflq 329 (753)
T KOG0464|consen 254 DLDADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNY-EFLQ 329 (753)
T ss_pred hccHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcch-HHHh
Confidence 666666666776664432 222222 112221 1234445 248999999999999976543 2222
Q ss_pred ccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEE
Q psy16810 269 LYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTI 348 (755)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~ 348 (755)
+| ...++++.||+.+|..+|. ++|.|+|||+++.+..+++. +....| .+.+++
T Consensus 330 wy-----------------kddlcalafkvlhdkqrg~-l~fmriysgsi~~~~ai~ni----n~~~se-----~~~kl~ 382 (753)
T KOG0464|consen 330 WY-----------------KDDLCALAFKVLHDKQRGP-LSFMRIYSGSIHNNLAIFNI----NGMCSE-----GILKLF 382 (753)
T ss_pred hh-----------------hhhHHHHhhhhhcccccCc-eeEEEEecccccCceeeeec----cccccc-----chHhhh
Confidence 22 3458999999999999998 99999999999999999944 334444 689999
Q ss_pred EeccCceeeeccccCCCeEEeccccceeeecceeecCCCc------------------------cccccccccCCceEEE
Q psy16810 349 LMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDA------------------------HNLRVMKFSVSPVVRV 404 (755)
Q Consensus 349 ~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~------------------------~~~~~~~~~~~Pv~~~ 404 (755)
...++++.+++++.||+|...+||++. ++|+|+.+++.. ..+..+..| .|||++
T Consensus 383 ~pfade~~~i~qlsagnialt~glk~t-atgdtivaskasa~aa~qk~~~egekk~~q~~daerll~agie~p-d~vffc 460 (753)
T KOG0464|consen 383 LPFADEHREIEQLSAGNIALTAGLKHT-ATGDTIVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFC 460 (753)
T ss_pred ccchhhhhhhhhcccccEEEEecceee-ccCCeEEecchhHHHHHHHhhccchhhccCCccccceeeecccCC-CceEEE
Confidence 999999999999999999999999986 457788765421 123456665 899999
Q ss_pred EEeeCCCCChhhHHHHHHHhHhcCCceEEE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeecccc
Q psy16810 405 AVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEE 483 (755)
Q Consensus 405 ~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~ 483 (755)
.|||.+...++.+..||+.|.+||||+.++ +.+|||+++.||||||+|++.+||+++| |+++.+++.+|+|||+|.+.
T Consensus 461 ~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~gelhie~ihdrikrey-~ldtfig~lqvayre~i~~~ 539 (753)
T KOG0464|consen 461 CIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMGELHIEAIHDRIKREY-GLDTFIGKLQVAYREMILEE 539 (753)
T ss_pred eccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccchhhHHHHHHHHHhhc-CchheehhHHHHHHHHHHHH
Confidence 999999999999999999999999999998 8999999999999999999999999999 99999999999999999886
Q ss_pred ccceeee---ecCCcee-EEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCcee
Q psy16810 484 SDQVCLS---KSPNKHN-RLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLL 559 (755)
Q Consensus 484 ~~~~~~~---~~~~~~~-~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l 559 (755)
....... -+..+|- -+.+++.|.+... ++. .++++|+. |....
T Consensus 540 lr~t~~ld~~lgdkk~~~~velear~~~tqa-------~ip------------~kkiefe~----------~es~n---- 586 (753)
T KOG0464|consen 540 LRATAKLDDGLGDKKHLEFVELEARLEETQA-------HIP------------FKKIEFEL----------AESAN---- 586 (753)
T ss_pred hhhhhhhhccccccccceEEEEEeeeccccc-------ccc------------ceeEEeec----------ccccc----
Confidence 5432111 0122221 2444444433211 000 01122210 10000
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceee
Q psy16810 560 IDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLME 639 (755)
Q Consensus 560 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlE 639 (755)
.| .+.--..+|+.|+..||..|||+|+|+++|+++|..+.+|.... .+..+.+++++|+.+|+.+|.-.|+|
T Consensus 587 ----~~--~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~--n~alisac~qkcvqealkkad~~l~e 658 (753)
T KOG0464|consen 587 ----EG--LLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKI--NPALISACAQKCVQEALKKADKQLLE 658 (753)
T ss_pred ----ch--hhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcC--CHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 11 12112489999999999999999999999999999999986432 23456778999999999999999999
Q ss_pred cEEEEEEEeec-cchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecC
Q psy16810 640 PVYLCEIQCPE-VAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718 (755)
Q Consensus 640 Pi~~~eI~~p~-~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~ 718 (755)
|+|+++|++-. +++..|+++|.+|||++.+.+..+.+...+|.|.+|++|..||++.||.+|+|-|.|.++|++|+.|.
T Consensus 659 plm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn 738 (753)
T KOG0464|consen 659 PLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMN 738 (753)
T ss_pred hhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcC
Confidence 99999999865 99999999999999999988876666556799999999999999999999999999999999999997
Q ss_pred CC
Q psy16810 719 GD 720 (755)
Q Consensus 719 ~~ 720 (755)
++
T Consensus 739 ~~ 740 (753)
T KOG0464|consen 739 EH 740 (753)
T ss_pred hH
Confidence 65
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.2e-79 Score=700.71 Aligned_cols=468 Identities=27% Similarity=0.458 Sum_probs=384.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
||||+|+||+|||||||+++|++.+|.+.....-..+++|+.++|++|||||.++..++.|+
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~------------------ 62 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN------------------ 62 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC------------------
Confidence 79999999999999999999999999887543223468999999999999999999999995
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHHH
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDL 167 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~~ 167 (755)
+++|||||||||.||..++.++++.+|+|++|||+.+|++.||+.+|+++...++|+|+|+||||+..+ ...+.
T Consensus 63 --~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a----~~~~v 136 (594)
T TIGR01394 63 --GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSA----RPDEV 136 (594)
T ss_pred --CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCc----CHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999652 22333
Q ss_pred HHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChHHH
Q psy16810 168 YQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEAL 247 (755)
Q Consensus 168 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~~L 247 (755)
...+......+.. ..+. . .+. +. ..+...|+.....+.. -.....|
T Consensus 137 ~~ei~~l~~~~g~-----~~e~--l-~~p----vl--------~~SA~~g~~~~~~~~~--------------~~gi~~L 182 (594)
T TIGR01394 137 VDEVFDLFAELGA-----DDEQ--L-DFP----IV--------YASGRAGWASLDLDDP--------------SDNMAPL 182 (594)
T ss_pred HHHHHHHHHhhcc-----cccc--c-cCc----EE--------echhhcCcccccCccc--------------ccCHHHH
Confidence 3333333221110 0000 0 000 00 0000001100000000 0023679
Q ss_pred HHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEc
Q psy16810 248 LQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIM 327 (755)
Q Consensus 248 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~ 327 (755)
|+++++++|+|. .++++||+++||+++++++.|+ ++++||+||+|++||.|++.
T Consensus 183 ld~Iv~~lP~P~-------------------------~~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~ 236 (594)
T TIGR01394 183 FDAIVRHVPAPK-------------------------GDLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALM 236 (594)
T ss_pred HHHHHHhCCCCC-------------------------CCCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEe
Confidence 999999999983 2457899999999999999998 99999999999999999976
Q ss_pred cCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEe
Q psy16810 328 GPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVE 407 (755)
Q Consensus 328 ~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~Ie 407 (755)
+.+ ++. ...+|++++.+.|.++.++++|.|||||+++|+++.. .|+|||+...+..++++.++ +|+++++++
T Consensus 237 ~~~---~~~---~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~-~Gdtl~~~~~~~~l~~~~~~-~P~~~~~~~ 308 (594)
T TIGR01394 237 KRD---GTI---ENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDIN-IGETIADPEVPEALPTITVD-EPTLSMTFS 308 (594)
T ss_pred cCC---Cce---eEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccC-CCCEEeCCCccccCCCCCCC-CCeEEEEEE
Confidence 431 211 1127999999999999999999999999999998853 36699998887788888876 899999999
Q ss_pred eCCC---CChhh------HHHHHHHhHhcCCceEEE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEE
Q psy16810 408 PKNP---ADLPK------LVEGLKRLSKSDPMVQCI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR 477 (755)
Q Consensus 408 P~~~---~d~~k------L~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yr 477 (755)
|.+. +++.| |.++|.+++++||+|++. +++|+|++|+|||||||+|+++||+++ |+|+.+++|+|+||
T Consensus 309 ~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre--g~e~~~~~P~V~yr 386 (594)
T TIGR01394 309 VNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE--GFELQVGRPQVIYK 386 (594)
T ss_pred ecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc--CceEEEeCCEEEEE
Confidence 9754 44444 999999999999999997 688999999999999999999999998 89999999999999
Q ss_pred eeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCc
Q psy16810 478 ETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPN 557 (755)
Q Consensus 478 ETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~ 557 (755)
| |.
T Consensus 387 e-i~---------------------------------------------------------------------------- 389 (594)
T TIGR01394 387 E-ID---------------------------------------------------------------------------- 389 (594)
T ss_pred e-CC----------------------------------------------------------------------------
Confidence 8 41
Q ss_pred eeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCce
Q psy16810 558 LLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRL 637 (755)
Q Consensus 558 ~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~L 637 (755)
| +|
T Consensus 390 -------g----------------------------------------------------------------------~l 392 (594)
T TIGR01394 390 -------G----------------------------------------------------------------------KK 392 (594)
T ss_pred -------C----------------------------------------------------------------------eE
Confidence 1 57
Q ss_pred eecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeec
Q psy16810 638 MEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 717 (755)
Q Consensus 638 lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v 717 (755)
|||||+++|.||++++|+||++|++|||+|+++++.++. ..+|+|.+|++|++||.++|||+|+|+|+|++.|+||+++
T Consensus 393 lEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~~-~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~ 471 (594)
T TIGR01394 393 LEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNG-RTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPW 471 (594)
T ss_pred ECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCCC-EEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeC
Confidence 999999999999999999999999999999999975432 5799999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy16810 718 PGDPTDP 724 (755)
Q Consensus 718 ~~~~~~~ 724 (755)
|++....
T Consensus 472 ~~~i~~~ 478 (594)
T TIGR01394 472 KGEIETR 478 (594)
T ss_pred CCcCCCC
Confidence 9887554
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=6.8e-78 Score=684.68 Aligned_cols=466 Identities=26% Similarity=0.416 Sum_probs=381.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++||||+|+||+|||||||+++|++.+|.+.+...-..+++|+.++|++||+|+.+...++.|+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~---------------- 66 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN---------------- 66 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC----------------
Confidence 4799999999999999999999999999887532223478999999999999999999999885
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
+++|||||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+.+...++|.++|+||+|+..+++....+
T Consensus 67 ----~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ 142 (607)
T PRK10218 67 ----DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVD 142 (607)
T ss_pred ----CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998654332223
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCC-CCccccccchHHHHHHHHHhccCCh
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIE-LKPEDKEKDGKALLKVVMRTWLPAG 244 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~-l~~~~~~~~~~~l~~~~~~~~~p~g 244 (755)
++ ..+...++... .. .++.++- ++ ...|+. +..++.. ...
T Consensus 143 ei----~~l~~~l~~~~-----~~---~~~PVi~-~S-----------A~~G~~~~~~~~~~---------------~~i 183 (607)
T PRK10218 143 QV----FDLFVNLDATD-----EQ---LDFPIVY-AS-----------ALNGIAGLDHEDMA---------------EDM 183 (607)
T ss_pred HH----HHHHhccCccc-----cc---cCCCEEE-eE-----------hhcCcccCCccccc---------------cch
Confidence 33 22221111100 00 0000000 00 000110 0000000 012
Q ss_pred HHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeE
Q psy16810 245 EALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324 (755)
Q Consensus 245 ~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v 324 (755)
.+|||+|++++|+|. +++++||+++|||++++++.|+ ++++||+||+|+.||.|
T Consensus 184 ~~Lld~Ii~~iP~P~-------------------------~~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v 237 (607)
T PRK10218 184 TPLYQAIVDHVPAPD-------------------------VDLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQV 237 (607)
T ss_pred HHHHHHHHHhCCCCC-------------------------CCCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEE
Confidence 579999999999993 3467899999999999999998 99999999999999999
Q ss_pred EEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEE
Q psy16810 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRV 404 (755)
Q Consensus 325 ~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~ 404 (755)
++.+. .++. ...+|++++.+.|.++.++++|.|||||+++|+++.. .++|||+...+..++.+.++ +|++++
T Consensus 238 ~~~~~---~~~~---~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~-~GdTl~~~~~~~~l~~~~~~-~P~~~~ 309 (607)
T PRK10218 238 TIIDS---EGKT---RNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELN-ISDTVCDTQNVEALPALSVD-EPTVSM 309 (607)
T ss_pred EEecC---CCcE---eeEEEEEEEEEecCCceECCEEcCCCEEEEECccccc-cCcEEecCCCcccCCCCCCC-CCeEEE
Confidence 96532 1221 1127999999999999999999999999999999864 36699988777778888876 899999
Q ss_pred EEeeCC---CCChhhHHH---HHHHhHh---cCCceEEE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEE
Q psy16810 405 AVEPKN---PADLPKLVE---GLKRLSK---SDPMVQCI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVV 474 (755)
Q Consensus 405 ~IeP~~---~~d~~kL~~---aL~~L~~---eDPsl~v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V 474 (755)
++.|.+ .+|+.|+.. +|++|.+ +||+|++. +++|+|++|+|||||||+|+++||+++ |+|+.+++|+|
T Consensus 310 ~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre--g~e~~~~~P~V 387 (607)
T PRK10218 310 FFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE--GFELAVSRPKV 387 (607)
T ss_pred EEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC--CceEEEeCCEE
Confidence 999999 789999855 5566665 99999997 688999999999999999999999999 89999999999
Q ss_pred EEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCC
Q psy16810 475 SYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGT 554 (755)
Q Consensus 475 ~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~ 554 (755)
+|||| ++
T Consensus 388 ~yret-----~g-------------------------------------------------------------------- 394 (607)
T PRK10218 388 IFREI-----DG-------------------------------------------------------------------- 394 (607)
T ss_pred EEEEE-----CC--------------------------------------------------------------------
Confidence 99998 11
Q ss_pred CCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcC
Q psy16810 555 GPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTAC 634 (755)
Q Consensus 555 ~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~ 634 (755)
+
T Consensus 395 ---------~---------------------------------------------------------------------- 395 (607)
T PRK10218 395 ---------R---------------------------------------------------------------------- 395 (607)
T ss_pred ---------E----------------------------------------------------------------------
Confidence 0
Q ss_pred CceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecce
Q psy16810 635 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHW 714 (755)
Q Consensus 635 ~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y 714 (755)
.||||++++|.||++++|+||++|++|||++++++..++ ....|+|.+|++|++||.++|||+|+|+|.|++.|+||
T Consensus 396 --klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~-~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y 472 (607)
T PRK10218 396 --KQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGK-GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHY 472 (607)
T ss_pred --EeCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCC-CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCc
Confidence 059999999999999999999999999999999997533 25799999999999999999999999999999999999
Q ss_pred eecC-CCC
Q psy16810 715 QVLP-GDP 721 (755)
Q Consensus 715 ~~v~-~~~ 721 (755)
+++| |+.
T Consensus 473 ~~~~~g~~ 480 (607)
T PRK10218 473 DDVRPGEV 480 (607)
T ss_pred cCCCCCCC
Confidence 9999 654
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.9e-76 Score=677.31 Aligned_cols=468 Identities=28% Similarity=0.431 Sum_probs=380.0
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
...++||||+|+||+|||||||+++|++.+|.+++...+ ..++|+.++|++||+|++++.+++.|..
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~------------ 68 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA------------ 68 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc------------
Confidence 346789999999999999999999999999998864433 4689999999999999999999999951
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccC
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQL 162 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~ 162 (755)
.++.++.+||||||||.||..++.++++.+|++|+|||+++|++.||...|..+...++|+|+|+||+|+...+
T Consensus 69 ---~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~--- 142 (600)
T PRK05433 69 ---KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD--- 142 (600)
T ss_pred ---cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc---
Confidence 12347899999999999999999999999999999999999999999999999999999999999999986421
Q ss_pred CHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC
Q psy16810 163 DAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP 242 (755)
Q Consensus 163 ~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p 242 (755)
..+....+... ++... . + +. ..+...|.
T Consensus 143 -~~~v~~ei~~~---lg~~~-----~-----~------vi--------~iSAktG~------------------------ 170 (600)
T PRK05433 143 -PERVKQEIEDV---IGIDA-----S-----D------AV--------LVSAKTGI------------------------ 170 (600)
T ss_pred -HHHHHHHHHHH---hCCCc-----c-----e------EE--------EEecCCCC------------------------
Confidence 11111111111 00000 0 0 00 00000000
Q ss_pred ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCC
Q psy16810 243 AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQ 322 (755)
Q Consensus 243 ~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~ 322 (755)
+...|++++++.+|+|. .++++||+++||+++.+++.|. ++++||++|+|++||
T Consensus 171 GI~~Ll~~I~~~lp~P~-------------------------~~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd 224 (600)
T PRK05433 171 GIEEVLEAIVERIPPPK-------------------------GDPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGD 224 (600)
T ss_pred CHHHHHHHHHHhCcccc-------------------------CCCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCC
Confidence 12579999999999983 2457899999999999999998 999999999999999
Q ss_pred eEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec-cc---cceeeecceeecCCCc--cccccccc
Q psy16810 323 KARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV-GV---DQFLVKTGTITTFKDA--HNLRVMKF 396 (755)
Q Consensus 323 ~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~-gl---~~~~~~~gTl~~~~~~--~~~~~~~~ 396 (755)
.|++.+ +++.+ ++.+++.+.+ +..+++++.||||+++. |+ ++.. .|+||++...+ ..++++.+
T Consensus 225 ~i~~~~----~~~~~-----~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~-~Gdtl~~~~~~~~~~l~~~~~ 293 (600)
T PRK05433 225 KIKMMS----TGKEY-----EVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDAR-VGDTITLAKNPAEEPLPGFKE 293 (600)
T ss_pred EEEEec----CCceE-----EEEEeeccCC-CceECcEEcCCCEEEEecccccccccC-CCCEEECCCCccccCCCCCCC
Confidence 999654 34443 6888886554 78999999999998875 44 4432 35699877654 35667766
Q ss_pred cCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEe-----echhHHHHHHHHHHhhccceeeEeeC
Q psy16810 397 SVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAG-----AGELHLEICLKDLEEDHACIPIKKSD 471 (755)
Q Consensus 397 ~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g-----~GElHLei~~~rL~~~f~~vev~~~~ 471 (755)
+ +|+++++|+|.+.+|.++|.+||++|++|||||.+. +||+|.++.| ||+|||||+++||+++| |+++.+++
T Consensus 294 ~-~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~-~~~v~~~~ 370 (600)
T PRK05433 294 V-KPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF-DLDLITTA 370 (600)
T ss_pred C-CcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh-CceEEEec
Confidence 5 899999999999999999999999999999999997 7899999999 99999999999999999 99999999
Q ss_pred cEEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCc
Q psy16810 472 PVVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGP 551 (755)
Q Consensus 472 p~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp 551 (755)
|.|+||||+++... +.+ +
T Consensus 371 P~V~Yreti~~g~~---------------~~~-----------------------------------~------------ 388 (600)
T PRK05433 371 PSVVYEVTLTDGEV---------------IEV-----------------------------------D------------ 388 (600)
T ss_pred CEEEEEEEEeCCcE---------------EEE-----------------------------------E------------
Confidence 99999999975200 000 0
Q ss_pred CCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHH
Q psy16810 552 DGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLL 631 (755)
Q Consensus 552 ~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~ 631 (755)
+ | .|+| |+...
T Consensus 389 ------------------~-----------------p-~~~p---------------ds~~~------------------ 399 (600)
T PRK05433 389 ------------------N-----------------P-SKLP---------------DPGKI------------------ 399 (600)
T ss_pred ------------------C-----------------c-ccCC---------------Ccccc------------------
Confidence 0 1 1222 11110
Q ss_pred hcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhh-cCchHHHhhhcCCcceeEeE
Q psy16810 632 TACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNES-FGFTADLRSNTGGQAFPQCV 710 (755)
Q Consensus 632 ~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~g~~~~~ 710 (755)
.+||||||+++|.+|++++|+||+++++|||++++++..++ ...|+|.+|++|+ ++|.++|||+|+|+|+|.++
T Consensus 400 ---~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~--~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~ 474 (600)
T PRK05433 400 ---EEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGN--RVELTYELPLAEIVFDFFDRLKSVSRGYASLDYE 474 (600)
T ss_pred ---ceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecCC--eEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEE
Confidence 18999999999999999999999999999999999997654 5799999999999 99999999999999999999
Q ss_pred ecceeec
Q psy16810 711 FDHWQVL 717 (755)
Q Consensus 711 f~~y~~v 717 (755)
|+||++.
T Consensus 475 ~~~Y~~~ 481 (600)
T PRK05433 475 FIGYRES 481 (600)
T ss_pred ECCcccc
Confidence 9999975
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.1e-75 Score=668.06 Aligned_cols=465 Identities=29% Similarity=0.425 Sum_probs=378.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++||||+|+||+|||||||+++|++.+|.++....+ ..++|+.++|++||+|+.+..+++.|..
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~--------------- 64 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA--------------- 64 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc---------------
Confidence 369999999999999999999999999998864333 4689999999999999999999999851
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
.++..+.++|||||||.||..++.++++.+|++|+|+|+++|++.||..+|..+...++|+|+|+||+|+... ..+
T Consensus 65 ~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~----~~~ 140 (595)
T TIGR01393 65 KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSA----DPE 140 (595)
T ss_pred CCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCcc----CHH
Confidence 1123589999999999999999999999999999999999999999999999888899999999999998642 112
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChH
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGE 245 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~ 245 (755)
+....+.... +... . + +. ..+.+.|. +..
T Consensus 141 ~~~~el~~~l---g~~~-----~-----~------vi--------~vSAktG~------------------------GI~ 169 (595)
T TIGR01393 141 RVKKEIEEVI---GLDA-----S-----E------AI--------LASAKTGI------------------------GIE 169 (595)
T ss_pred HHHHHHHHHh---CCCc-----c-----e------EE--------EeeccCCC------------------------CHH
Confidence 2212221111 1000 0 0 00 00000011 125
Q ss_pred HHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEE
Q psy16810 246 ALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKAR 325 (755)
Q Consensus 246 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~ 325 (755)
.|++.+++++|+|. .++++||+++||+++.+++.|. ++++||++|+|++||+|+
T Consensus 170 ~Lle~I~~~lp~p~-------------------------~~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~ 223 (595)
T TIGR01393 170 EILEAIVKRVPPPK-------------------------GDPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIR 223 (595)
T ss_pred HHHHHHHHhCCCCC-------------------------CCCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEE
Confidence 78999999999983 2457899999999999999998 999999999999999999
Q ss_pred EccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec-c---ccceeeecceeecCCCc--cccccccccCC
Q psy16810 326 IMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV-G---VDQFLVKTGTITTFKDA--HNLRVMKFSVS 399 (755)
Q Consensus 326 i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~~~~gTl~~~~~~--~~~~~~~~~~~ 399 (755)
+.+. ++.+ ++.++..+.+.. .+++++.||||+++. | +++.. .|+||++.+.+ ..++++.++ +
T Consensus 224 ~~~~----~~~~-----~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~-~Gdtl~~~~~~~~~~l~~~~~~-~ 291 (595)
T TIGR01393 224 FMST----GKEY-----EVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVR-VGDTITHVKNPAKEPLPGFKEV-K 291 (595)
T ss_pred EecC----CCee-----EEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccC-CCCEEECCCCccccCCCCCcCC-C
Confidence 6543 4443 688888676655 899999999998875 4 44432 36699887654 356677765 8
Q ss_pred ceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEe-----echhHHHHHHHHHHhhccceeeEeeCcEE
Q psy16810 400 PVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAG-----AGELHLEICLKDLEEDHACIPIKKSDPVV 474 (755)
Q Consensus 400 Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g-----~GElHLei~~~rL~~~f~~vev~~~~p~V 474 (755)
|+++++|+|.+.+|.++|.+||++|++|||||.+. .||+|.+++| ||+|||||+++||+++| |+++.+++|.|
T Consensus 292 P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~g~lG~lHlei~~erL~re~-~~~v~~~~P~V 369 (595)
T TIGR01393 292 PMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE-PESSPALGFGFRCGFLGLLHMEIIQERLEREF-NLDLITTAPSV 369 (595)
T ss_pred cEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE-ecCCcccccccEEeeeeHHHHHHHHHHHHHHh-CCeeEEecCEE
Confidence 99999999999999999999999999999999997 4889888885 99999999999999999 99999999999
Q ss_pred EEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCC
Q psy16810 475 SYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGT 554 (755)
Q Consensus 475 ~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~ 554 (755)
+||||+++.. .+++
T Consensus 370 ~Yreti~~g~---------------~~~~--------------------------------------------------- 383 (595)
T TIGR01393 370 IYRVYLTNGE---------------VIEV--------------------------------------------------- 383 (595)
T ss_pred EEEEEecCCc---------------EEEE---------------------------------------------------
Confidence 9999987410 0100
Q ss_pred CCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcC
Q psy16810 555 GPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTAC 634 (755)
Q Consensus 555 ~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~ 634 (755)
.+ | .|+|+.++ -
T Consensus 384 --------------~~-----------------p-~~~p~~~~------------------------------------~ 395 (595)
T TIGR01393 384 --------------DN-----------------P-SDLPDPGK------------------------------------I 395 (595)
T ss_pred --------------EC-----------------c-ccCCCccc------------------------------------c
Confidence 00 2 26666541 1
Q ss_pred CceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhh-cCchHHHhhhcCCcceeEeEecc
Q psy16810 635 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNES-FGFTADLRSNTGGQAFPQCVFDH 713 (755)
Q Consensus 635 ~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~g~~~~~f~~ 713 (755)
|.||||||+++|.+|++++|+||+++++|||++++++..++. ...|+|.+|++|+ ++|.++|||+|+|.|+|.++|+|
T Consensus 396 ~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~-~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~ 474 (595)
T TIGR01393 396 EHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPN-RVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIG 474 (595)
T ss_pred cceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCC-eEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECC
Confidence 799999999999999999999999999999999999975433 4799999999997 99999999999999999999999
Q ss_pred eee
Q psy16810 714 WQV 716 (755)
Q Consensus 714 y~~ 716 (755)
|++
T Consensus 475 Y~~ 477 (595)
T TIGR01393 475 YRP 477 (595)
T ss_pred ccc
Confidence 997
No 20
>KOG0462|consensus
Probab=100.00 E-value=6.9e-69 Score=569.21 Aligned_cols=471 Identities=30% Similarity=0.416 Sum_probs=381.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+++||++|++|+|||||||+++||..+|.+++ ..+..+++|+...||+|||||++...++.|.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~-~~~q~q~LDkl~vERERGITIkaQtasify~~--------------- 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDN-NIGQEQVLDKLQVERERGITIKAQTASIFYKD--------------- 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCC-CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---------------
Confidence 68999999999999999999999999998876 34556799999999999999999999999971
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
+..|.+||||||||+||..||.++|.+||||||||||++|+++||...+..|.++|+.+|.|+||+|+..+ +++
T Consensus 122 --~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a----dpe 195 (650)
T KOG0462|consen 122 --GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA----DPE 195 (650)
T ss_pred --CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC----CHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999984 556
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChH
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGE 245 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~ 245 (755)
....++..+.+..+... ...+.+.|.. ++
T Consensus 196 ~V~~q~~~lF~~~~~~~---------------------------i~vSAK~G~~------------------------v~ 224 (650)
T KOG0462|consen 196 RVENQLFELFDIPPAEV---------------------------IYVSAKTGLN------------------------VE 224 (650)
T ss_pred HHHHHHHHHhcCCccce---------------------------EEEEeccCcc------------------------HH
Confidence 65555554443321100 0111222322 25
Q ss_pred HHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEE
Q psy16810 246 ALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKAR 325 (755)
Q Consensus 246 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~ 325 (755)
.||++|++.+|+|. ...++||++++|..+.|.+.|. ++++||..|.+++||+|.
T Consensus 225 ~lL~AII~rVPpP~-------------------------~~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~ 278 (650)
T KOG0462|consen 225 ELLEAIIRRVPPPK-------------------------GIRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQ 278 (650)
T ss_pred HHHHHHHhhCCCCC-------------------------CCCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEE
Confidence 69999999999994 2458999999999999999998 999999999999999998
Q ss_pred EccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEecc-ccceeeecceeecCCCcc---ccccccccCCce
Q psy16810 326 IMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVG-VDQFLVKTGTITTFKDAH---NLRVMKFSVSPV 401 (755)
Q Consensus 326 i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~g-l~~~~~~~gTl~~~~~~~---~~~~~~~~~~Pv 401 (755)
.+. ++++ |+.+.-.++....-...+++...+|+|++..+ +++..+ |+|++...... .++..+ +..|+
T Consensus 279 ~~~----t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~I-GdTi~~~~~~~~v~tl~~~~-~~~pM 349 (650)
T KOG0462|consen 279 SAA----TGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQI-GDTIAHKSVTKAVETLPGFE-PTKPM 349 (650)
T ss_pred Eee----cCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccccc-cceeeecccCcccCcCCCCC-CCcce
Confidence 543 3433 34445555556555666677778888888877 777654 77998765322 233333 34799
Q ss_pred EEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCC---Cc-eEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEE
Q psy16810 402 VRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEES---GE-HIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR 477 (755)
Q Consensus 402 ~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~et---ge-~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yr 477 (755)
+++...|.+.+|...|.+++.+|+.+|+++.+..+.+ |+ +.+.+.|.|||+|.++||+++| |.++-+++|.|+||
T Consensus 350 vFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey-g~elivt~PtV~Yr 428 (650)
T KOG0462|consen 350 VFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY-GAELIVTPPTVPYR 428 (650)
T ss_pred EEeccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc-CceeeecCCcceEE
Confidence 9999999999999999999999999999999975444 33 6999999999999999999999 99999999999999
Q ss_pred eeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCc
Q psy16810 478 ETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPN 557 (755)
Q Consensus 478 ETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~ 557 (755)
=-..+..+.. ...|
T Consensus 429 ~~~~~~~~~~------------------------------------------------------------i~np------ 442 (650)
T KOG0462|consen 429 VVYSNGDEIL------------------------------------------------------------ISNP------ 442 (650)
T ss_pred EEecCCceee------------------------------------------------------------ecCh------
Confidence 5433221100 0001
Q ss_pred eeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCce
Q psy16810 558 LLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRL 637 (755)
Q Consensus 558 ~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~L 637 (755)
..|+ |-... .-.
T Consensus 443 --------~~fp---------------------------------------~~~~v---------------------~~~ 454 (650)
T KOG0462|consen 443 --------ALFP---------------------------------------DPSDV---------------------KEF 454 (650)
T ss_pred --------hhCC---------------------------------------Ccccc---------------------hhh
Confidence 0011 00000 135
Q ss_pred eecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcC-chHHHhhhcCCcceeEeEecceee
Q psy16810 638 MEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFG-FTADLRSNTGGQAFPQCVFDHWQV 716 (755)
Q Consensus 638 lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~g-y~~~Lrs~T~G~g~~~~~f~~y~~ 716 (755)
|||+...+|.+|++++|.|+..++.|||...++...+++ ...++-++|++|+.| |-..|.|.|+|.|+|..+|++|+
T Consensus 455 lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~n-r~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~- 532 (650)
T KOG0462|consen 455 LEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGN-RVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ- 532 (650)
T ss_pred cCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCC-eEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc-
Confidence 899999999999999999999999999999999987776 689999999999999 99999999999999999999999
Q ss_pred cCCCCC
Q psy16810 717 LPGDPT 722 (755)
Q Consensus 717 v~~~~~ 722 (755)
++|..
T Consensus 533 -~sdLv 537 (650)
T KOG0462|consen 533 -ASDLV 537 (650)
T ss_pred -cccce
Confidence 55543
No 21
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-67 Score=543.93 Aligned_cols=465 Identities=27% Similarity=0.464 Sum_probs=385.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
..+|||||++|+|||||||++.||..+|.......-.-++||+...|++|||||-+....+.|+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 4799999999999999999999999999988654444578999999999999999999999995
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
+++||++|||||.||-+|+++.|...|+++|+|||.+|+++||+.+++.|.+.|++.|+||||+|++.+ .++
T Consensus 67 ----~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~A----rp~ 138 (603)
T COG1217 67 ----GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDA----RPD 138 (603)
T ss_pred ----CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCC----CHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999974 455
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHH-HH---HHHhCCC-CCccccccchHHHHHHHHHhc
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAE-SL---LSKLGIE-LKPEDKEKDGKALLKVVMRTW 240 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~-~l---le~~~~~-l~~~~~~~~~~~l~~~~~~~~ 240 (755)
+......++...+.. +++.++ .+ +..-|+. ++.++... .
T Consensus 139 ~Vvd~vfDLf~~L~A------------------------~deQLdFPivYAS~~~G~a~~~~~~~~~---~--------- 182 (603)
T COG1217 139 EVVDEVFDLFVELGA------------------------TDEQLDFPIVYASARNGTASLDPEDEAD---D--------- 182 (603)
T ss_pred HHHHHHHHHHHHhCC------------------------ChhhCCCcEEEeeccCceeccCcccccc---c---------
Confidence 544433333322211 111100 00 0000110 11111000 0
Q ss_pred cCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecC
Q psy16810 241 LPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVAT 320 (755)
Q Consensus 241 ~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~ 320 (755)
-.+|+++|.+|.|.|. .+.++||.++|+..-+++|.|+ +..+||++|++++
T Consensus 183 ---m~pLfe~I~~hvp~P~-------------------------~~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~ 233 (603)
T COG1217 183 ---MAPLFETILDHVPAPK-------------------------GDLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKP 233 (603)
T ss_pred ---hhHHHHHHHHhCCCCC-------------------------CCCCCCeEEEEEeeccccccce-eEEEEEecCcccC
Confidence 1579999999999994 3678999999999999999998 9999999999999
Q ss_pred CCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCc
Q psy16810 321 GQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSP 400 (755)
Q Consensus 321 g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~P 400 (755)
||.|.++.. .+..+ .-+|.+++-+.|=++.++++|.|||||||+|+++..+ ++|+|++..+..++.+... +|
T Consensus 234 ~q~V~~i~~---~g~~~---~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~i-gdTi~d~~~~~aLp~l~iD-eP 305 (603)
T COG1217 234 NQQVALIKS---DGTTE---NGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINI-GDTICDPDNPEALPALSVD-EP 305 (603)
T ss_pred CCeEEEEcC---CCcEE---eeEEEeeeeccceeeeecccccccCEEEEcCcccccc-cccccCCCCccCCCCcccC-CC
Confidence 999998753 23332 2379999999999999999999999999999998654 6799999998899988876 89
Q ss_pred eEEEEEeeCCC----C-----ChhhHHHHHHHhHhcCCceEEEE-CCCCceEEEeechhHHHHHHHHHHhhccceeeEee
Q psy16810 401 VVRVAVEPKNP----A-----DLPKLVEGLKRLSKSDPMVQCII-EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKS 470 (755)
Q Consensus 401 v~~~~IeP~~~----~-----d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLei~~~rL~~~f~~vev~~~ 470 (755)
.+++.+...+. . ...++.+.|.+-.+.+-+|++.. ++-..+.++|-|||||-|+++.+|++ |.|+.+|
T Consensus 306 TlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE--GfEl~Vs 383 (603)
T COG1217 306 TLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE--GFELQVS 383 (603)
T ss_pred ceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc--ceEEEec
Confidence 99998874332 1 24578999999999999999985 44488999999999999999999998 8999999
Q ss_pred CcEEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeC
Q psy16810 471 DPVVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFG 550 (755)
Q Consensus 471 ~p~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 550 (755)
.|+|.||| |- +
T Consensus 384 rP~Vi~ke-id----G---------------------------------------------------------------- 394 (603)
T COG1217 384 RPEVIIKE-ID----G---------------------------------------------------------------- 394 (603)
T ss_pred CceEEEEe-cC----C----------------------------------------------------------------
Confidence 99999998 31 0
Q ss_pred cCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHH
Q psy16810 551 PDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASL 630 (755)
Q Consensus 551 p~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~ 630 (755)
T Consensus 395 -------------------------------------------------------------------------------- 394 (603)
T COG1217 395 -------------------------------------------------------------------------------- 394 (603)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeE
Q psy16810 631 LTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCV 710 (755)
Q Consensus 631 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~ 710 (755)
.++||+-.+.|-||+++.|.|+..|..|+|...+|.+.++ .+.++...+|.+-+.||.+++-++|+|.|.....
T Consensus 395 -----~~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~-G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~ 468 (603)
T COG1217 395 -----VKCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGK-GRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHS 468 (603)
T ss_pred -----cCcCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCCC-CeEEEEEEccCcceeccchheeeccccceeeeec
Confidence 1246888889999999999999999999999999987543 3689999999999999999999999999999999
Q ss_pred ecceeecCCCCCCC
Q psy16810 711 FDHWQVLPGDPTDP 724 (755)
Q Consensus 711 f~~y~~v~~~~~~~ 724 (755)
|+||+|..++.-..
T Consensus 469 F~~Y~p~~g~i~~R 482 (603)
T COG1217 469 FDHYRPVKGEIGGR 482 (603)
T ss_pred cccccccccccccc
Confidence 99999998865443
No 22
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.1e-65 Score=579.15 Aligned_cols=420 Identities=25% Similarity=0.334 Sum_probs=333.7
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---c---cCcccccCCchhhhhhccccccceEEEEeeeCccccc
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---K---AGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMV 76 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~---~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 76 (755)
...+++|||+|+||+|||||||+++|++.+|.++.. . .+++.++|+++.|++||+|+.++..++.|+
T Consensus 5 ~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~------- 77 (526)
T PRK00741 5 QEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR------- 77 (526)
T ss_pred chhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC-------
Confidence 345689999999999999999999999999988742 1 233456899999999999999999999995
Q ss_pred cccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 77 FITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 77 ~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
++++||||||||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+||+|+.
T Consensus 78 -------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 78 -------------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD 144 (526)
T ss_pred -------------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcccCCHHHHHHHHHHHhhhceeeEEEecCCC--CCCc------------------ceEeehhhhcccHHHHHHHHHHh
Q psy16810 157 LLELQLDAEDLYQTFQRIVENVNVIIATYSDDS--GPMG------------------EVRVFDSIMNYKKEEAESLLSKL 216 (755)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~--~~~~------------------~~~l~e~v~~~~~e~l~~lle~~ 216 (755)
+++ ..++...++..+.. ...+..|+... .+.| ...+.+.+++.|+++++++++.-
T Consensus 145 ~a~----~~~~l~~i~~~l~~-~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~ 219 (526)
T PRK00741 145 GRE----PLELLDEIEEVLGI-ACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGED 219 (526)
T ss_pred ccC----HHHHHHHHHHHhCC-CCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhccc
Confidence 743 23333333333221 22222222111 1111 11345668888888888887631
Q ss_pred C-------CCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCccc
Q psy16810 217 G-------IELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEA 278 (755)
Q Consensus 217 ~-------~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 278 (755)
. ..+..++.. .....++. +.++|+ .+.|||+|++++|+|.++....
T Consensus 220 ~~~~l~~~lel~~~~~~---~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~------------- 283 (526)
T PRK00741 220 LAEQLREELELVQGASN---EFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE------------- 283 (526)
T ss_pred HHHHHHHHHHhhhhccc---chhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc-------------
Confidence 0 011111110 11123333 567783 4899999999999997543210
Q ss_pred cccccccCCCCCeEEEEEeeec---cCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCce
Q psy16810 279 AIGIKNCDPNAPLMMYVSKMVP---TSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYV 355 (755)
Q Consensus 279 ~~~~~~~~~~~pl~~~V~K~~~---~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~ 355 (755)
....+ .+.||+++|||+.+ +++.|+ ++|+|||||+|++|+.|+ |.++++++ ++++++.++|.++
T Consensus 284 --~~~~~-~~~~~~~~VFK~~~~m~~~~~gr-lafvRV~sG~l~~g~~v~----~~~~~k~~-----ri~~~~~~~g~~~ 350 (526)
T PRK00741 284 --REVEP-TEEKFSGFVFKIQANMDPKHRDR-IAFVRVCSGKFEKGMKVR----HVRTGKDV-----RISNALTFMAQDR 350 (526)
T ss_pred --eeecC-CCCceEEEEEEEEecCCCCcCce-EEEEEEeccEECCCCEEE----eccCCceE-----EecceEEEecCCc
Confidence 00112 34679999999984 568898 999999999999999999 66667766 7999999999999
Q ss_pred eeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-
Q psy16810 356 EAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI- 434 (755)
Q Consensus 356 ~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~- 434 (755)
+++++|.||||+++.|++++. .|+||++.+ +..++++.++ +|+++++|+|+++.|.+||.+||++|++||| +++.
T Consensus 351 ~~v~~a~aGDIv~v~~l~~~~-~GDTL~~~~-~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~ 426 (526)
T PRK00741 351 EHVEEAYAGDIIGLHNHGTIQ-IGDTFTQGE-KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFR 426 (526)
T ss_pred eECceeCCCCEEEEECCCCCc-cCCCccCCC-ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEE
Confidence 999999999999999999864 366998765 5567777776 8999999999999999999999999999995 8886
Q ss_pred ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeecc
Q psy16810 435 IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVS 481 (755)
Q Consensus 435 ~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~ 481 (755)
+++|||++|+|||||||||+++||+++| |+++.+++|+|++-.-|.
T Consensus 427 ~~~t~e~il~g~G~lhleV~~~RL~~ey-~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 427 PLDNNDLILGAVGQLQFEVVAHRLKNEY-NVEAIYEPVGVATARWVE 472 (526)
T ss_pred CCCCCCEEEEEEeHHHHHHHHHHHHHHh-CCEEEEecCCccEEEEEe
Confidence 7899999999999999999999999999 999999999999988775
No 23
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.4e-65 Score=529.11 Aligned_cols=467 Identities=28% Similarity=0.431 Sum_probs=373.6
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
..++|||++|++|+|||||||+++|+..+|.++.+.. +..++|+++.|++|||||++..+.+.|..
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem-~~Q~LDsMdiERERGITIKaq~v~l~Yk~------------- 70 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREM-RAQVLDSMDIERERGITIKAQAVRLNYKA------------- 70 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHH-HHHhhhhhhhHhhcCceEEeeEEEEEEEe-------------
Confidence 4578999999999999999999999999999986433 34689999999999999999999999972
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCC
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLD 163 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~ 163 (755)
+++..|.+||||||||+||..||.++|.+|.||+|||||+.|+++||..-.-+|.+.++.+|-|+||+|++.+ +
T Consensus 71 --~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A----d 144 (603)
T COG0481 71 --KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA----D 144 (603)
T ss_pred --CCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC----C
Confidence 2346899999999999999999999999999999999999999999999999999999999999999999874 5
Q ss_pred HHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCC
Q psy16810 164 AEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPA 243 (755)
Q Consensus 164 ~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~ 243 (755)
++...+.+++++.. +.+.....+.+.|..+
T Consensus 145 pervk~eIe~~iGi---------------------------d~~dav~~SAKtG~gI----------------------- 174 (603)
T COG0481 145 PERVKQEIEDIIGI---------------------------DASDAVLVSAKTGIGI----------------------- 174 (603)
T ss_pred HHHHHHHHHHHhCC---------------------------CcchheeEecccCCCH-----------------------
Confidence 56665555554332 1111112222323322
Q ss_pred hHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCe
Q psy16810 244 GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQK 323 (755)
Q Consensus 244 g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~ 323 (755)
+.+|++|++.+|+|. .++++|+.|++|+.+.|++.|. ++++||+.|++++||+
T Consensus 175 -~~iLe~Iv~~iP~P~-------------------------g~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdk 227 (603)
T COG0481 175 -EDVLEAIVEKIPPPK-------------------------GDPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDK 227 (603)
T ss_pred -HHHHHHHHhhCCCCC-------------------------CCCCCcceEEEEeccccccceE-EEEEEEeeceecCCCE
Confidence 679999999999993 4678999999999999999997 9999999999999999
Q ss_pred EEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe-ccc---cceeeecceeecCCC--cccccccccc
Q psy16810 324 ARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL-VGV---DQFLVKTGTITTFKD--AHNLRVMKFS 397 (755)
Q Consensus 324 v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai-~gl---~~~~~~~gTl~~~~~--~~~~~~~~~~ 397 (755)
|..+.. +++. .|..+-.+.- ...+++++.||+++-+ +|+ .+..+ |||++...+ ..++++.+-
T Consensus 228 i~~m~t----g~~y-----~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~V-GDTiT~~~~p~~e~LpGfk~- 295 (603)
T COG0481 228 IRMMST----GKEY-----EVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARV-GDTITLASNPATEPLPGFKE- 295 (603)
T ss_pred EEEEec----CCEE-----EEEEEeeccC-CccccccccCCceeEEEEeeeecccCcc-cceEeccCCCccccCCCCCc-
Confidence 998753 4443 3445444443 6688999999999754 344 44433 668874332 345555554
Q ss_pred CCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCce-----EEEeechhHHHHHHHHHHhhccceeeEeeCc
Q psy16810 398 VSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEH-----IVAGAGELHLEICLKDLEEDHACIPIKKSDP 472 (755)
Q Consensus 398 ~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~-----il~g~GElHLei~~~rL~~~f~~vev~~~~p 472 (755)
..|++++.+.|.+..|.+.|.+||.+|...|-+|.+.. ||.+- -..-+|-|||||+.+||+|+| ++++-...|
T Consensus 296 ~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~-EtS~ALGfGfRcGFLGlLHmeiiqERLeREf-~ldlI~TaP 373 (603)
T COG0481 296 VKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEP-ETSQALGFGFRCGFLGLLHMEIIQERLEREF-DLDLITTAP 373 (603)
T ss_pred CCceEEEeecccChhHHHHHHHHHHhcccccceeeecc-ccchhccCceeehhhhHHHHHHHHHHHHHhh-CcceEecCC
Confidence 38999999999999999999999999999999998863 34332 333389999999999999999 999999999
Q ss_pred EEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcC
Q psy16810 473 VVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPD 552 (755)
Q Consensus 473 ~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~ 552 (755)
.|.|+=..++..+. .+ . .|
T Consensus 374 sV~Y~v~~~~g~~~-----------~i----~---------------------------------------------NP- 392 (603)
T COG0481 374 SVVYKVELTDGEEI-----------EV----D---------------------------------------------NP- 392 (603)
T ss_pred ceEEEEEEcCCcEE-----------Ee----c---------------------------------------------Ch-
Confidence 99999665432211 00 0 00
Q ss_pred CCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHh
Q psy16810 553 GTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLT 632 (755)
Q Consensus 553 ~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~ 632 (755)
. .+|-. ++
T Consensus 393 -------------s------------------------~~P~~--------------------~~--------------- 400 (603)
T COG0481 393 -------------S------------------------DLPDP--------------------NK--------------- 400 (603)
T ss_pred -------------H------------------------hCCCh--------------------hh---------------
Confidence 0 01100 00
Q ss_pred cCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhh-cCchHHHhhhcCCcceeEeEe
Q psy16810 633 ACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNES-FGFTADLRSNTGGQAFPQCVF 711 (755)
Q Consensus 633 a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~g~~~~~f 711 (755)
=-.+.||+.+++|.+|++|+|.||...+.+||...+++..+.. .+.++-.+|++|+ ++|-..|.|.|+|.|+|..+|
T Consensus 401 -I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~-rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~ 478 (603)
T COG0481 401 -IEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQN-RVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEF 478 (603)
T ss_pred -hheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCc-eEEEEEecchHHHHHHHhHhhhccccceeeecccc
Confidence 0146799999999999999999999999999999999876544 6899999999997 599999999999999999999
Q ss_pred cceee
Q psy16810 712 DHWQV 716 (755)
Q Consensus 712 ~~y~~ 716 (755)
.+|++
T Consensus 479 ~~y~~ 483 (603)
T COG0481 479 IGYRE 483 (603)
T ss_pred ccccc
Confidence 99996
No 24
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.2e-63 Score=562.81 Aligned_cols=414 Identities=24% Similarity=0.334 Sum_probs=318.5
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---c-cC--cccccCCchhhhhhccccccceEEEEeeeCccccc
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---K-AG--ETRFTDTRKDEQERCITIKSTAISMYFELDDKDMV 76 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~-~g--~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 76 (755)
....++|||+|+||+|||||||+++|++.+|.+... . .| ..+++|+.+.|++||+|+.++...+.|+
T Consensus 6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~------- 78 (527)
T TIGR00503 6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR------- 78 (527)
T ss_pred hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC-------
Confidence 445789999999999999999999999999988742 1 12 1357999999999999999999999985
Q ss_pred cccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 77 FITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 77 ~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
++++||||||||.||..++.++++.+|+||+|||++.|+..||+.+|+.+...++|+++|+||+|+.
T Consensus 79 -------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 79 -------------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred -------------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhcccCCHHHHHHHHHHHhhhceeeEEEecC--CCCC------------------CcceEeehhhhcccH---------H
Q psy16810 157 LLELQLDAEDLYQTFQRIVENVNVIIATYSD--DSGP------------------MGEVRVFDSIMNYKK---------E 207 (755)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~--~~~~------------------~~~~~l~e~v~~~~~---------e 207 (755)
.+ +..++...++.....- .....|.. +... .+.....+.+.+.++ +
T Consensus 146 ~~----~~~~ll~~i~~~l~~~-~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 220 (527)
T TIGR00503 146 IR----DPLELLDEVENELKIN-CAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSD 220 (527)
T ss_pred CC----CHHHHHHHHHHHhCCC-CccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHH
Confidence 53 4455555555544321 11111110 0000 000011111111111 1
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCc
Q psy16810 208 EAESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDD 276 (755)
Q Consensus 208 ~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~ 276 (755)
.++++.+.+ +.+...+-..+ .+++. +.++|+ .+.|||++++++|+|.++....
T Consensus 221 ~~~~~~~~l-e~~~~~~~~~~----~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~----------- 284 (527)
T TIGR00503 221 LAQQLRDEL-ELVEGASNEFD----LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT----------- 284 (527)
T ss_pred HHHHHHHHH-HHHhhhccccC----HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc-----------
Confidence 122221111 00111000111 12222 567773 4899999999999997543110
Q ss_pred cccccccccCCCCCeEEEEEeeec--c-CCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccC
Q psy16810 277 EAAIGIKNCDPNAPLMMYVSKMVP--T-SDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGR 353 (755)
Q Consensus 277 ~~~~~~~~~~~~~pl~~~V~K~~~--~-~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~ 353 (755)
....+ .++||+++|||+.+ | ++.|+ ++|+|||||+|++|++|+ |.++++++ ++++++.++|.
T Consensus 285 ----~~~~~-~~~~~~~~VFK~~~~mdp~~~gr-iaf~RV~sG~l~~g~~v~----~~~~~k~~-----ri~~~~~~~g~ 349 (527)
T TIGR00503 285 ----RTVEP-TEEKFSGFVFKIQANMDPKHRDR-VAFMRVVSGKYEKGMKLK----HVRTGKDV-----VISDALTFMAG 349 (527)
T ss_pred ----eecCC-CCCCeeEEEEEEEeccCcccCce-EEEEEEeeeEEcCCCEEE----ecCCCCcE-----EecchhhhhcC
Confidence 01122 46789999999988 7 58998 999999999999999999 66667766 89999999999
Q ss_pred ceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEE
Q psy16810 354 YVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQC 433 (755)
Q Consensus 354 ~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v 433 (755)
+++++++|.|||||++.|++++. .|+||++. ....++++.++ +|+++++|+|+++.|++||.+||++|++||| +++
T Consensus 350 ~~~~v~~a~aGDI~~~~~~~~~~-~GDtl~~~-~~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v 425 (527)
T TIGR00503 350 DREHVEEAYAGDIIGLHNHGTIQ-IGDTFTQG-EKIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQV 425 (527)
T ss_pred CceEcceeCCCCEEEEECCCCcc-cCCEecCC-CceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEE
Confidence 99999999999999999999864 36699884 45667777775 8999999999999999999999999999998 888
Q ss_pred E-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEE
Q psy16810 434 I-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR 477 (755)
Q Consensus 434 ~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yr 477 (755)
. +++|+|++|+|||||||||+++||+++| ||++.+++|+|+.-
T Consensus 426 ~~~~~t~e~il~g~GelhleV~~~RL~~ey-~v~v~~~~~~v~~~ 469 (527)
T TIGR00503 426 FRPLDNNDLIVGAVGVLQFDVVVYRLKEEY-NVEARYEPVNVATA 469 (527)
T ss_pred EEcCCCCCEEEEEEeHHHHHHHHHHHHHHh-CCeEEEeCCCceEE
Confidence 6 7899999999999999999999999999 99999999999853
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-51 Score=422.28 Aligned_cols=409 Identities=25% Similarity=0.362 Sum_probs=306.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccc------cccCcccccCCchhhhhhccccccceEEEEeeeCcccccccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG------AKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFIT 79 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~------~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 79 (755)
.+-|++|||.|+|+|||||++.||...|+|.. ++.++...+|+++.|++|||+|.+++..|.|.
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~---------- 79 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA---------- 79 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC----------
Confidence 35699999999999999999999999988873 23344457999999999999999999999985
Q ss_pred CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhc
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLE 159 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~ 159 (755)
++.+||+|||||.||+..+.+.|.++|.||+||||..|+++||..+++-|+..++|++-|||||||.+
T Consensus 80 ----------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~-- 147 (528)
T COG4108 80 ----------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG-- 147 (528)
T ss_pred ----------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc--
Confidence 89999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCHHHHHHHHHHHhhhceeeEEEecCCCC--CCc-------ceEeehhh-----------hcccHHHHH---------
Q psy16810 160 LQLDAEDLYQTFQRIVENVNVIIATYSDDSG--PMG-------EVRVFDSI-----------MNYKKEEAE--------- 210 (755)
Q Consensus 160 ~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~--~~~-------~~~l~e~v-----------~~~~~e~l~--------- 210 (755)
.++-++...+++.+.. ...+..|+-+.+ +.| .+.+|+.- .+.+...+.
T Consensus 148 --rdP~ELLdEiE~~L~i-~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 224 (528)
T COG4108 148 --RDPLELLDEIEEELGI-QCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAE 224 (528)
T ss_pred --CChHHHHHHHHHHhCc-ceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHH
Confidence 5667777766666553 333344533321 111 12233221 111111111
Q ss_pred HHHHHhCCCCCcc-ccccchHHHHHHHH-HhccC----------ChHHHHHHHHhcCCCCccccccchhhccCCCCCccc
Q psy16810 211 SLLSKLGIELKPE-DKEKDGKALLKVVM-RTWLP----------AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEA 278 (755)
Q Consensus 211 ~lle~~~~~l~~~-~~~~~~~~l~~~~~-~~~~p----------~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 278 (755)
.+.+.+ +|-.+ -...+ ..++. ....| +++.+|++++++.|+|..+....-
T Consensus 225 ~~~ee~--EL~~~a~~~Fd----~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~------------ 286 (528)
T COG4108 225 QLREEL--ELVQGAGNEFD----LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTR------------ 286 (528)
T ss_pred HHHHHH--HHHHhhccccC----HHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcC------------
Confidence 111111 00000 00000 01111 23344 248999999999999975543210
Q ss_pred cccccccCC-CCCeEEEEEeeeccC---CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCc
Q psy16810 279 AIGIKNCDP-NAPLMMYVSKMVPTS---DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRY 354 (755)
Q Consensus 279 ~~~~~~~~~-~~pl~~~V~K~~~~~---~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~ 354 (755)
...+ +..|.+||||+..+- ++-+ ++|.||.||.+..|+++. ..++|+.- +++.-..+++++
T Consensus 287 -----~v~p~e~kfsGFVFKIQANMDp~HRDR-IAFmRv~SGkferGMkv~----h~rtGK~~-----~ls~~~~f~A~d 351 (528)
T COG4108 287 -----EVEPTEDKFSGFVFKIQANMDPKHRDR-IAFMRVCSGKFERGMKVT----HVRTGKDV-----KLSDALTFMAQD 351 (528)
T ss_pred -----cccCCCCccceEEEEEEcCCCcccccc-eeEEEeccccccCCceee----eeecCCce-----EecchHhhhhhh
Confidence 1122 344999999997642 3444 999999999999999998 55667664 677778899999
Q ss_pred eeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE
Q psy16810 355 VEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI 434 (755)
Q Consensus 355 ~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~ 434 (755)
++.+++|.||||++|..-..+.+ |||++.. ....+.++.. ..|-++..|..+++....+|.+||.+|++|--.=-++
T Consensus 352 Re~ve~A~aGDIIGl~nhG~~~I-GDT~t~G-e~l~f~giP~-FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~ 428 (528)
T COG4108 352 RETVEEAYAGDIIGLHNHGTIQI-GDTFTEG-EKLKFTGIPN-FAPELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFK 428 (528)
T ss_pred hhhhhhccCCCeEeccCCCceee-cceeecC-ceeeecCCCC-CCHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEe
Confidence 99999999999999987666554 7798876 4566666643 2688888999999999999999999999996443334
Q ss_pred ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEE
Q psy16810 435 IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 476 (755)
Q Consensus 435 ~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~y 476 (755)
...+.+.||...|.||+|++.+||+++| ++++.+.+..++.
T Consensus 429 p~~~~d~IlGAVG~LQFeV~~~RL~~EY-~ve~~~e~~~~~~ 469 (528)
T COG4108 429 PLDGNDLILGAVGQLQFEVVQARLKNEY-NVEAVFEPVNFST 469 (528)
T ss_pred cCCCCCceEEeeeeeehHHHHHHHHhhh-CCeEEEeeccceE
Confidence 6678999999999999999999999999 9999887665544
No 26
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=7.1e-39 Score=310.79 Aligned_cols=174 Identities=49% Similarity=0.887 Sum_probs=166.0
Q ss_pred CcEEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeC
Q psy16810 471 DPVVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFG 550 (755)
Q Consensus 471 ~p~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 550 (755)
+|.|+|||||.+.+...+..+++++|++++++++||++++.+.|++|.+....+.+.+.+++.++|+|+..++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 59999999999988878889999999999999999999999999999999888899999999999999999999999999
Q ss_pred cCCCCCceeeeccC----CccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHH
Q psy16810 551 PDGTGPNLLIDCTK----GVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVL 626 (755)
Q Consensus 551 p~~~~~~~l~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~ 626 (755)
|+..|||+|+|.+. +.+|+++++++|++||+||+++|||||+||+||+|+|.|+.+|.|..+++++|+++|+|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99999999999776 55788999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHhcCCceeecEEEE
Q psy16810 627 YASLLTACPRLMEPVYLC 644 (755)
Q Consensus 627 ~~a~~~a~~~LlEPi~~~ 644 (755)
++|+++|+|+||||||+|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999985
No 27
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=6e-35 Score=323.52 Aligned_cols=298 Identities=24% Similarity=0.369 Sum_probs=210.9
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
+.+.+..+||+++||+|||||||+++|++..|.++.........+|+.++|++||+|++++...+.|+
T Consensus 6 ~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~------------ 73 (409)
T CHL00071 6 FERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE------------ 73 (409)
T ss_pred ccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC------------
Confidence 45567889999999999999999999999998876544444557999999999999999987766553
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchhhhcc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRALLEL 160 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~~~~~ 160 (755)
+.+++|||||||.+|..++.++++.+|+|++|||+.+|++.||++++.++...++| +|+++||||+...+
T Consensus 74 --------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~- 144 (409)
T CHL00071 74 --------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE- 144 (409)
T ss_pred --------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH-
Confidence 67899999999999999999999999999999999999999999999999999999 56899999985311
Q ss_pred cCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhc
Q psy16810 161 QLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTW 240 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~ 240 (755)
...+.+...+...+..+.. ..+. +.+ -.++... |.++...... . ..-...|
T Consensus 145 -~~~~~~~~~l~~~l~~~~~-----~~~~-----~~i-i~~Sa~~-----------g~n~~~~~~~-----~-~~~~~~w 195 (409)
T CHL00071 145 -ELLELVELEVRELLSKYDF-----PGDD-----IPI-VSGSALL-----------ALEALTENPK-----I-KRGENKW 195 (409)
T ss_pred -HHHHHHHHHHHHHHHHhCC-----CCCc-----ceE-EEcchhh-----------cccccccCcc-----c-cccCCch
Confidence 0011122233333332211 0000 000 0000000 1111000000 0 0001256
Q ss_pred cCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecC
Q psy16810 241 LPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVAT 320 (755)
Q Consensus 241 ~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~ 320 (755)
+..+..||+++.+++|+|. .+.++||+++|++++..++.|. +++|||++|+++.
T Consensus 196 ~~~~~~ll~~l~~~~~~p~-------------------------~~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l~~ 249 (409)
T CHL00071 196 VDKIYNLMDAVDSYIPTPE-------------------------RDTDKPFLMAIEDVFSITGRGT-VATGRIERGTVKV 249 (409)
T ss_pred hhhHHHHHHHHHhhCCCCC-------------------------CCCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEEee
Confidence 6666889999999888773 1346899999999999999998 8999999999999
Q ss_pred CCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cccceeeecc-eeecCC
Q psy16810 321 GQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GVDQFLVKTG-TITTFK 386 (755)
Q Consensus 321 g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~~g-Tl~~~~ 386 (755)
||.|.+.+.+ .+.. .+|..+... .+++++|.|||+|++. +++...++.| .|++.+
T Consensus 250 Gd~v~i~p~~--~~~~-----~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 250 GDTVEIVGLR--ETKT-----TTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred CCEEEEeeCC--CCcE-----EEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 9999887532 1111 256776543 2578999999999664 6653224445 666643
No 28
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-35 Score=304.42 Aligned_cols=286 Identities=29% Similarity=0.420 Sum_probs=209.5
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-----ccccCCchhhhhhccccccceEEEE
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-----TRFTDTRKDEQERCITIKSTAISMY 67 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~ 67 (755)
...+...|++++||+|||||||+++|||.+|.++.+ ..|+ ..+||+.++||+||+||+.+...|.
T Consensus 2 ~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 2 ASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 345678899999999999999999999999999852 2343 2469999999999999999888776
Q ss_pred eeeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-------ceehHHHHHHHHH
Q psy16810 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-------VCVQTETVLRQAI 140 (755)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~~ 140 (755)
- +.+.++++|||||.||..+|+.+.+.||.|||||||..| +..||++|+-+++
T Consensus 82 t--------------------~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~ 141 (428)
T COG5256 82 T--------------------DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLAR 141 (428)
T ss_pred c--------------------CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHH
Confidence 5 377899999999999999999999999999999999998 8999999999999
Q ss_pred HcCCc-eEEEEeccchhhhcccCCHHHHHHHHHHHhhhceeeEEE--ecCCCCCCcceEeehhhhcccHHHHHHHHHHhC
Q psy16810 141 AERIK-PVLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIAT--YSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLG 217 (755)
Q Consensus 141 ~~~ip-~iv~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~--~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~ 217 (755)
.+|+. .||+|||||... |. +++|+.+.+.++..... |..+.-. |-.++.+. |
T Consensus 142 tlGi~~lIVavNKMD~v~------wd--e~rf~ei~~~v~~l~k~~G~~~~~v~------FIPiSg~~-----------G 196 (428)
T COG5256 142 TLGIKQLIVAVNKMDLVS------WD--EERFEEIVSEVSKLLKMVGYNPKDVP------FIPISGFK-----------G 196 (428)
T ss_pred hcCCceEEEEEEcccccc------cC--HHHHHHHHHHHHHHHHHcCCCccCCe------EEeccccc-----------C
Confidence 99995 578899999864 22 23455555544321111 1111100 11112211 1
Q ss_pred CCCCccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEe
Q psy16810 218 IELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSK 297 (755)
Q Consensus 218 ~~l~~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K 297 (755)
.++.... + ...||- |..||+++- .+..|. ..-++||++.|.+
T Consensus 197 ~Nl~~~s-~----------~~pWY~-GpTLleaLd-~~~~p~-------------------------~~~d~Plr~pI~~ 238 (428)
T COG5256 197 DNLTKKS-E----------NMPWYK-GPTLLEALD-QLEPPE-------------------------RPLDKPLRLPIQD 238 (428)
T ss_pred CcccccC-c----------CCcCcc-CChHHHHHh-ccCCCC-------------------------CCCCCCeEeEeee
Confidence 1221110 0 235664 578999886 555552 1137899999999
Q ss_pred eeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccce
Q psy16810 298 MVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQF 375 (755)
Q Consensus 298 ~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~ 375 (755)
++...+.|. +..+||-+|.|++||+|++.+.+ ... .|+.+. + ..++++.+.|||.+.+ .|++..
T Consensus 239 v~~i~~~gt-v~vGrVEsG~i~~g~~v~~~p~~----~~~-----evksie-~---~~~~~~~a~~GD~i~~~vrgv~~~ 304 (428)
T COG5256 239 VYSISGIGT-VPVGRVESGVIKPGQKVTFMPAG----VVG-----EVKSIE-M---HHEEISQAEPGDNVGFNVRGVEKN 304 (428)
T ss_pred EEEecCCce-EEEEEEeeeeeccCCEEEEecCc----ceE-----EEeeee-e---cccccccCCCCCeEEEEecCCchh
Confidence 999888998 89999999999999999998753 211 345553 2 2588999999999876 465554
Q ss_pred eeecceeecC
Q psy16810 376 LVKTGTITTF 385 (755)
Q Consensus 376 ~~~~gTl~~~ 385 (755)
.++.|.++..
T Consensus 305 dI~~Gdv~~~ 314 (428)
T COG5256 305 DIRRGDVIGH 314 (428)
T ss_pred ccCCccEecc
Confidence 4666766544
No 29
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.9e-34 Score=318.07 Aligned_cols=282 Identities=25% Similarity=0.370 Sum_probs=200.5
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
..++.+||+++||+|||||||+++|+...+............+|..++|++||+|++++...+.+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~--------------- 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET--------------- 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC---------------
Confidence 34678999999999999999999998654322111111123689999999999999887655443
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchhhhcccC
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRALLELQL 162 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~~~~~~~ 162 (755)
+++.++|||||||.+|..++.++++.+|+|++|||+.+|++.||+++|.++...++|. |+++||||+..
T Consensus 73 -----~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~----- 142 (394)
T PRK12736 73 -----EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD----- 142 (394)
T ss_pred -----CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc-----
Confidence 3678999999999999999999999999999999999999999999999999999995 68899999852
Q ss_pred CHHHHHH----HHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q psy16810 163 DAEDLYQ----TFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMR 238 (755)
Q Consensus 163 ~~~~~~~----~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~ 238 (755)
.++.++ .+...+..+.. ..+. ..+ + .++... |.. ...
T Consensus 143 -~~~~~~~i~~~i~~~l~~~~~-----~~~~---~~i--i-~vSa~~-----------g~~----------------~~~ 183 (394)
T PRK12736 143 -DEELLELVEMEVRELLSEYDF-----PGDD---IPV--I-RGSALK-----------ALE----------------GDP 183 (394)
T ss_pred -hHHHHHHHHHHHHHHHHHhCC-----CcCC---ccE--E-Eeeccc-----------ccc----------------CCC
Confidence 122221 22222222110 0000 000 0 000000 000 002
Q ss_pred hccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEe
Q psy16810 239 TWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKV 318 (755)
Q Consensus 239 ~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL 318 (755)
.|++.+..|++++.+++|+|. .+.++||+++|+++|.+++.|. +++|||.+|+|
T Consensus 184 ~~~~~i~~Ll~~l~~~lp~~~-------------------------~~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l 237 (394)
T PRK12736 184 KWEDAIMELMDAVDEYIPTPE-------------------------RDTDKPFLMPVEDVFTITGRGT-VVTGRVERGTV 237 (394)
T ss_pred cchhhHHHHHHHHHHhCCCCC-------------------------CCCCCCeEEEEEEEEecCCcEE-EEEEEEeecEE
Confidence 466566889999999999773 1346899999999999999998 89999999999
Q ss_pred cCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceeeecc-eeecCC
Q psy16810 319 ATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLVKTG-TITTFK 386 (755)
Q Consensus 319 ~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~~g-Tl~~~~ 386 (755)
+.||.|++++.+. +.. .+|+++... ..++++|.|||++++ .|++...+..| +|++.+
T Consensus 238 ~~gd~v~i~p~~~--~~~-----~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 238 KVGDEVEIVGIKE--TQK-----TVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred ecCCEEEEecCCC--CeE-----EEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 9999999876421 111 256666532 468999999999966 67653224444 677653
No 30
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2e-34 Score=320.51 Aligned_cols=289 Identities=24% Similarity=0.345 Sum_probs=200.9
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccc---------cC-c-----ccccCCchhhhhhccccccceEEE
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAK---------AG-E-----TRFTDTRKDEQERCITIKSTAISM 66 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~---------~g-~-----~~~~d~~~~E~~rgiTi~~~~~~~ 66 (755)
|...+..+||+++||+|||||||+++||+.+|.+++.. .+ + .+++|+.++|++||+||+.+...+
T Consensus 1 ~~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~ 80 (447)
T PLN00043 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF 80 (447)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence 34457789999999999999999999999999887531 11 1 247999999999999999987777
Q ss_pred EeeeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-------ehHHHHHHHH
Q psy16810 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQA 139 (755)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-------~qt~~~~~~~ 139 (755)
.|+ ++.+||||||||.||..++.++++.+|+||+|||+.+|.. .||+++|.++
T Consensus 81 ~~~--------------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~ 140 (447)
T PLN00043 81 ETT--------------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 140 (447)
T ss_pred cCC--------------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHH
Confidence 664 8899999999999999999999999999999999999842 7999999999
Q ss_pred HHcCCce-EEEEeccchhhhcc-cCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhC
Q psy16810 140 IAERIKP-VLFMNKMDRALLEL-QLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLG 217 (755)
Q Consensus 140 ~~~~ip~-iv~iNKiD~~~~~~-~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~ 217 (755)
..+++|. |+++||||+...++ +...+++.+.+...+..+.. ..+ ++. +-.++... |
T Consensus 141 ~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~-----~~~-----~~~-~ipiSa~~-----------G 198 (447)
T PLN00043 141 FTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY-----NPD-----KIP-FVPISGFE-----------G 198 (447)
T ss_pred HHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCC-----Ccc-----cce-EEEEeccc-----------c
Confidence 9999975 77899999852111 00111222222222222110 000 000 00011111 1
Q ss_pred CCCCccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEe
Q psy16810 218 IELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSK 297 (755)
Q Consensus 218 ~~l~~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K 297 (755)
.++.... -...|+. |..||+++.+ +|.|. .+.++||++.|..
T Consensus 199 ~ni~~~~-----------~~~~Wy~-g~tLl~~l~~-i~~p~-------------------------~~~~~plr~~I~~ 240 (447)
T PLN00043 199 DNMIERS-----------TNLDWYK-GPTLLEALDQ-INEPK-------------------------RPSDKPLRLPLQD 240 (447)
T ss_pred ccccccc-----------cCCcccc-hHHHHHHHhh-cCCCc-------------------------cccCCCcEEEEEE
Confidence 1111000 0013553 4678888865 55442 1246899999999
Q ss_pred eeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cccce
Q psy16810 298 MVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GVDQF 375 (755)
Q Consensus 298 ~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~ 375 (755)
++..++.|. ++.|||.+|++++||.|.+.+. +.. .+|..+.. ...++++|.|||.+++. +++..
T Consensus 241 v~~~~g~G~-vv~G~V~~G~l~~Gd~v~~~P~----~~~-----~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~ 306 (447)
T PLN00043 241 VYKIGGIGT-VPVGRVETGVIKPGMVVTFGPT----GLT-----TEVKSVEM----HHESLQEALPGDNVGFNVKNVAVK 306 (447)
T ss_pred EEEeCCcEE-EEEEEEECCEEeeCCEEEEcCC----CCE-----EEEEEEEE----CCeEeCEecCCCeEEEEECCCCHh
Confidence 999999997 8999999999999999998754 222 15666643 34789999999998873 55332
Q ss_pred eeecc-eeec
Q psy16810 376 LVKTG-TITT 384 (755)
Q Consensus 376 ~~~~g-Tl~~ 384 (755)
.+..| .|++
T Consensus 307 ~i~rG~vl~~ 316 (447)
T PLN00043 307 DLKRGYVASN 316 (447)
T ss_pred hCCCccEEcc
Confidence 24455 4454
No 31
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=5.4e-34 Score=317.99 Aligned_cols=294 Identities=23% Similarity=0.387 Sum_probs=208.7
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
+++.+.++||+++||+|||||||+++|++.+|.+......+..++|+.++|++||+|++++...+.|+
T Consensus 75 ~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~------------ 142 (478)
T PLN03126 75 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE------------ 142 (478)
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC------------
Confidence 34467799999999999999999999999999887654445567999999999999999887777664
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchhhhcc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRALLEL 160 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~~~~~ 160 (755)
+++++|||||||.+|..++.++++.+|+|++|||+.+|+..||+++|.++..+++| +|+++||||+..
T Consensus 143 --------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~--- 211 (478)
T PLN03126 143 --------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD--- 211 (478)
T ss_pred --------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC---
Confidence 77999999999999999999999999999999999999999999999999999999 567999999853
Q ss_pred cCCHHHHHH----HHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q psy16810 161 QLDAEDLYQ----TFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVV 236 (755)
Q Consensus 161 ~~~~~~~~~----~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~ 236 (755)
.++.++ .+..++..+. |.... +.++ .++..+.. ..+.. ...+...
T Consensus 212 ---~~~~~~~i~~~i~~~l~~~g-----~~~~~-----~~~v-p~Sa~~g~---n~~~~-~~~~~~g------------- 260 (478)
T PLN03126 212 ---DEELLELVELEVRELLSSYE-----FPGDD-----IPII-SGSALLAL---EALME-NPNIKRG------------- 260 (478)
T ss_pred ---HHHHHHHHHHHHHHHHHhcC-----CCcCc-----ceEE-EEEccccc---ccccc-ccccccC-------------
Confidence 222222 3333333221 00000 0000 00000000 00000 0000000
Q ss_pred HHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEe
Q psy16810 237 MRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSG 316 (755)
Q Consensus 237 ~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sG 316 (755)
...|+..+..|++++.++.|.|. .+.+.||+++|..+|..++.|. ++.|+|.+|
T Consensus 261 ~~~wy~~i~~Ll~~l~~~~~~p~-------------------------r~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V~sG 314 (478)
T PLN03126 261 DNKWVDKIYELMDAVDSYIPIPQ-------------------------RQTDLPFLLAVEDVFSITGRGT-VATGRVERG 314 (478)
T ss_pred CCchhhhHHHHHHHHHHhCCCCC-------------------------CccccceeeEEEEEEEeCCceE-EEEEEEEcC
Confidence 01455445679999988877662 1246799999999999999997 899999999
Q ss_pred EecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceeeecc-eeecCC
Q psy16810 317 KVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLVKTG-TITTFK 386 (755)
Q Consensus 317 tL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~~g-Tl~~~~ 386 (755)
++++||.|++.+.+ .... .+|..|... ..+++.|.|||.+++ .+++...+..| .|++.+
T Consensus 315 ~i~~Gd~v~i~p~~--~~~~-----~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 315 TVKVGETVDIVGLR--ETRS-----TTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred eEecCCEEEEecCC--CceE-----EEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 99999999987531 0111 246666433 378999999999888 46554333444 666643
No 32
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-34 Score=285.17 Aligned_cols=267 Identities=27% Similarity=0.406 Sum_probs=191.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
.++.+-||+.+||+|||||||+.+|..................|..|+|++|||||+.+.+...-
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet--------------- 72 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET--------------- 72 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec---------------
Confidence 45678999999999999999999995443211111122233468899999999999988765443
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchhhhcccC
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRALLELQL 162 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~~~~~~~ 162 (755)
.+.++..+|||||.||.++|+.+.+.+|+|||||+|.+|.++||++|+.++++.|+|. ++|+||+|...
T Consensus 73 -----~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd----- 142 (394)
T COG0050 73 -----ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD----- 142 (394)
T ss_pred -----CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC-----
Confidence 4678899999999999999999999999999999999999999999999999999987 56899999863
Q ss_pred CHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHH--Hhc
Q psy16810 163 DAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM--RTW 240 (755)
Q Consensus 163 ~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~--~~~ 240 (755)
.+++.. ++ ..++..||+.|+.. .++.-.-....+++.. ..|
T Consensus 143 -d~elle----lV------------------------------emEvreLLs~y~f~--gd~~Pii~gSal~ale~~~~~ 185 (394)
T COG0050 143 -DEELLE----LV------------------------------EMEVRELLSEYGFP--GDDTPIIRGSALKALEGDAKW 185 (394)
T ss_pred -cHHHHH----HH------------------------------HHHHHHHHHHcCCC--CCCcceeechhhhhhcCCcch
Confidence 122211 10 12233455555321 1110000001111111 124
Q ss_pred cCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecC
Q psy16810 241 LPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVAT 320 (755)
Q Consensus 241 ~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~ 320 (755)
......||+++-+|+|.|. .+.++||++.|-.+++..+.|. ++++||-.|+|+.
T Consensus 186 ~~~i~eLm~avd~yip~Pe-------------------------r~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkv 239 (394)
T COG0050 186 EAKIEELMDAVDSYIPTPE-------------------------RDIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKV 239 (394)
T ss_pred HHHHHHHHHHHHhcCCCCC-------------------------CcccccccccceeeEEEcCcee-EEEEEEeeeeecc
Confidence 4345789999999999993 3457999999999999999998 9999999999999
Q ss_pred CCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe
Q psy16810 321 GQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369 (755)
Q Consensus 321 g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai 369 (755)
|+.+.+.|-. .+. +....-.-..++..++..|||.+++
T Consensus 240 g~eveivG~~-~~~----------kttvtgvemfrk~ld~~~AGdnvg~ 277 (394)
T COG0050 240 GEEVEIVGIK-ETQ----------KTTVTGVEMFRKLLDEGQAGDNVGV 277 (394)
T ss_pred CCEEEEeccc-ccc----------eeEEEhHHHHHHHHhccccCCCcce
Confidence 9999987642 111 1112222233456788999999765
No 33
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.5e-33 Score=311.31 Aligned_cols=282 Identities=23% Similarity=0.379 Sum_probs=197.9
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
++.++.+||+++||+|||||||+++|++......+........+|..++|++||+|++++...+.+
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-------------- 72 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-------------- 72 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC--------------
Confidence 455778999999999999999999998653321111111134689999999999999987665543
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE-EEEeccchhhhccc
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LFMNKMDRALLELQ 161 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-v~iNKiD~~~~~~~ 161 (755)
++++++|||||||.+|..++.++++.+|+|++|||+.+|+..||++++..+...++|.+ +++||||+..
T Consensus 73 ------~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~---- 142 (394)
T TIGR00485 73 ------ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD---- 142 (394)
T ss_pred ------CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC----
Confidence 36789999999999999999999999999999999999999999999999999999986 5899999853
Q ss_pred CCHHHHHH----HHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q psy16810 162 LDAEDLYQ----TFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM 237 (755)
Q Consensus 162 ~~~~~~~~----~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~ 237 (755)
.++.++ .+...+..... ... ++.++. ++.. .|..- .
T Consensus 143 --~~~~~~~~~~~i~~~l~~~~~-----~~~-----~~~ii~-vSa~-----------~g~~g----------------~ 182 (394)
T TIGR00485 143 --DEELLELVEMEVRELLSEYDF-----PGD-----DTPIIR-GSAL-----------KALEG----------------D 182 (394)
T ss_pred --HHHHHHHHHHHHHHHHHhcCC-----Ccc-----CccEEE-Cccc-----------ccccc----------------C
Confidence 222221 22222222110 000 000000 0000 00000 0
Q ss_pred HhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeE
Q psy16810 238 RTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGK 317 (755)
Q Consensus 238 ~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGt 317 (755)
..|+..+..||+++.+.+|.|. .+.++||+++|+++|..++.|. +++|||.+|+
T Consensus 183 ~~~~~~~~~ll~~l~~~~~~~~-------------------------~~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~ 236 (394)
T TIGR00485 183 AEWEAKILELMDAVDEYIPTPE-------------------------RETDKPFLMPIEDVFSITGRGT-VVTGRVERGI 236 (394)
T ss_pred CchhHhHHHHHHHHHhcCCCCC-------------------------CCCCCCeEEEEEEEEeeCCceE-EEEEEEEeeE
Confidence 1233334678999988888773 1346899999999999999998 8999999999
Q ss_pred ecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceeeecc-eeecC
Q psy16810 318 VATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLVKTG-TITTF 385 (755)
Q Consensus 318 L~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~~g-Tl~~~ 385 (755)
+++||.|++.+.. .++. .+|+.+... ..++++|.|||+|++ .|++...++.| +|++.
T Consensus 237 l~~gd~v~i~p~~--~~~~-----~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~ 296 (394)
T TIGR00485 237 VKVGEEVEIVGLK--DTRK-----TTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKP 296 (394)
T ss_pred EeCCCEEEEecCC--CCcE-----EEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecC
Confidence 9999999987531 1111 156666542 367899999999976 56643223444 67664
No 34
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=9.7e-34 Score=315.37 Aligned_cols=290 Identities=24% Similarity=0.332 Sum_probs=201.9
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccc------------cCcc---cccCCchhhhhhccccccceEEE
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAK------------AGET---RFTDTRKDEQERCITIKSTAISM 66 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~------------~g~~---~~~d~~~~E~~rgiTi~~~~~~~ 66 (755)
|.+.++..||+++||+|||||||+++|++.+|.+++.. .|+. .++|+.++|++||+|++.+...+
T Consensus 1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 34567789999999999999999999999999887521 2222 35999999999999999988877
Q ss_pred EeeeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-------eehHHHHHHHH
Q psy16810 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-------CVQTETVLRQA 139 (755)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-------~~qt~~~~~~~ 139 (755)
.|+ ++.++|||||||.+|..++.++++.+|+|++|||+.+|+ ..||+++|.++
T Consensus 81 ~~~--------------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~ 140 (446)
T PTZ00141 81 ETP--------------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA 140 (446)
T ss_pred ccC--------------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH
Confidence 764 889999999999999999999999999999999999998 48999999999
Q ss_pred HHcCCce-EEEEeccchhhhccc-CCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhC
Q psy16810 140 IAERIKP-VLFMNKMDRALLELQ-LDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLG 217 (755)
Q Consensus 140 ~~~~ip~-iv~iNKiD~~~~~~~-~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~ 217 (755)
..+|+|. |++|||||+...++. ...+++.+.+...+..+.. ..+. +.+ -.++... |
T Consensus 141 ~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~-----~~~~-----~~~-ipiSa~~-----------g 198 (446)
T PTZ00141 141 FTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGY-----NPEK-----VPF-IPISGWQ-----------G 198 (446)
T ss_pred HHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCC-----Cccc-----ceE-EEeeccc-----------C
Confidence 9999986 589999996542211 0112222222222221110 0000 000 0001100 1
Q ss_pred CCCCccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEe
Q psy16810 218 IELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSK 297 (755)
Q Consensus 218 ~~l~~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K 297 (755)
..+.... -...|+- |..|++++... +.|. .+.++||+++|..
T Consensus 199 ~ni~~~~-----------~~~~Wy~-G~tL~~~l~~~-~~~~-------------------------~~~~~p~r~~I~~ 240 (446)
T PTZ00141 199 DNMIEKS-----------DNMPWYK-GPTLLEALDTL-EPPK-------------------------RPVDKPLRLPLQD 240 (446)
T ss_pred CCcccCC-----------CCCcccc-hHHHHHHHhCC-CCCC-------------------------cCCCCCeEEEEEE
Confidence 1111000 0114653 46799988554 4441 1236899999999
Q ss_pred eeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cccce
Q psy16810 298 MVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GVDQF 375 (755)
Q Consensus 298 ~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~ 375 (755)
++..++.|. ++.|||.+|+|+.||+|.+++.+ .. .+|..|... ..++++|.|||.|++. +++..
T Consensus 241 v~~v~g~Gt-vv~G~V~~G~l~~Gd~v~i~P~~----~~-----~~VksI~~~----~~~~~~a~aG~~v~i~L~~i~~~ 306 (446)
T PTZ00141 241 VYKIGGIGT-VPVGRVETGILKPGMVVTFAPSG----VT-----TEVKSVEMH----HEQLAEAVPGDNVGFNVKNVSVK 306 (446)
T ss_pred EEecCCceE-EEEEEEEcceEecCCEEEEccCC----cE-----EEEEEEEec----CcccCEECCCCEEEEEECCCCHH
Confidence 999999998 89999999999999999987642 21 256666432 3689999999998874 44322
Q ss_pred eeecc-eeecC
Q psy16810 376 LVKTG-TITTF 385 (755)
Q Consensus 376 ~~~~g-Tl~~~ 385 (755)
.+..| .|++.
T Consensus 307 ~v~rG~vl~~~ 317 (446)
T PTZ00141 307 DIKRGYVASDS 317 (446)
T ss_pred HcCCceEEecC
Confidence 23444 55543
No 35
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.7e-34 Score=301.10 Aligned_cols=223 Identities=35% Similarity=0.538 Sum_probs=174.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
||+|+||+|||||||+++|++.+|.+++. ..| ++++|+.++|++||+|++++..++.|+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~-~~~~D~~~~E~~rgiti~~~~~~~~~~----------------- 62 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG-GATMDFMEQERERGITIQSAATTCFWK----------------- 62 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC-ccccCCCccccCCCcCeeccEEEEEEC-----------------
Confidence 89999999999999999999999987742 233 568999999999999999999999995
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAED 166 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~ 166 (755)
+++++|||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+.+.+.++|+++|+||+|+.++++....++
T Consensus 63 ---~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~ 139 (270)
T cd01886 63 ---DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQ 139 (270)
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999976432211222
Q ss_pred HHHHH-----------------HHHhhhceeeEEEecCCCCC-Cc--ce-------------EeehhhhcccHHHHHHHH
Q psy16810 167 LYQTF-----------------QRIVENVNVIIATYSDDSGP-MG--EV-------------RVFDSIMNYKKEEAESLL 213 (755)
Q Consensus 167 ~~~~~-----------------~~ii~~v~~~~~~~~~~~~~-~~--~~-------------~l~e~v~~~~~e~l~~ll 213 (755)
+...+ .++++.+....+.|..+.+. .. ++ .++|.+++.|++++++|+
T Consensus 140 l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl 219 (270)
T cd01886 140 IREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYL 219 (270)
T ss_pred HHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh
Confidence 22222 22223333333344221111 00 11 567889999999999999
Q ss_pred HHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCC
Q psy16810 214 SKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSP 258 (755)
Q Consensus 214 e~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP 258 (755)
+ +..++.+++. ..+.+++. +.++|+ ...|||++++|+|+|
T Consensus 220 ~--~~~~~~~el~---~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 220 E--GEEITEEEIK---AAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred C--CCCCCHHHHH---HHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 8 4677777654 44555555 678883 379999999999998
No 36
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=100.00 E-value=2e-34 Score=282.08 Aligned_cols=173 Identities=69% Similarity=1.140 Sum_probs=160.4
Q ss_pred CcEEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeC
Q psy16810 471 DPVVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFG 550 (755)
Q Consensus 471 ~p~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 550 (755)
+|.|+|||||.+.+...+..+++++|++++++++|||..+.+.|+++........+.+.+.+.++++|+..++++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 59999999999888777888999999999999999999999999999887776666667777789999988899999999
Q ss_pred cCCCCCceeeeccCCccc----hHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHH
Q psy16810 551 PDGTGPNLLIDCTKGVQY----LNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVL 626 (755)
Q Consensus 551 p~~~~~~~l~~~~~g~~~----~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~ 626 (755)
|++.|||+|+|.+.+.++ ++++.++|++||++|+++|||||+||+||+|+|.|+.+|.+..+++++++++|+|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 999999999998888777 8899999999999999999999999999999999999998767788999999999999
Q ss_pred HHHHHhcCCceeecEEE
Q psy16810 627 YASLLTACPRLMEPVYL 643 (755)
Q Consensus 627 ~~a~~~a~~~LlEPi~~ 643 (755)
++||++|+|+||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999994
No 37
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=6.6e-33 Score=305.97 Aligned_cols=285 Identities=22% Similarity=0.357 Sum_probs=202.5
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
+..++.+||+++||+|||||||+++|++..+............+|+.++|++||+|++++...+.+
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-------------- 72 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-------------- 72 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC--------------
Confidence 345678999999999999999999999855422211111234689999999999999987665544
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE-EEEeccchhhhccc
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LFMNKMDRALLELQ 161 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-v~iNKiD~~~~~~~ 161 (755)
++.+++|||||||.+|..++.+++..+|+|++|||+.+|+..||++++.++...++|.+ +++||||+..
T Consensus 73 ------~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~---- 142 (396)
T PRK12735 73 ------ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD---- 142 (396)
T ss_pred ------CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc----
Confidence 36789999999999999999999999999999999999999999999999999999976 5799999852
Q ss_pred CCHHHHHH----HHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q psy16810 162 LDAEDLYQ----TFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM 237 (755)
Q Consensus 162 ~~~~~~~~----~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~ 237 (755)
.++.+. .+...+..+.. ..+ ++.++ ..+...|.+.+. .
T Consensus 143 --~~~~~~~~~~ei~~~l~~~~~-----~~~-----~~~ii------------~~Sa~~g~n~~~--------------~ 184 (396)
T PRK12735 143 --DEELLELVEMEVRELLSKYDF-----PGD-----DTPII------------RGSALKALEGDD--------------D 184 (396)
T ss_pred --hHHHHHHHHHHHHHHHHHcCC-----CcC-----ceeEE------------ecchhccccCCC--------------C
Confidence 122221 22222222110 000 00000 000000111100 0
Q ss_pred HhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeE
Q psy16810 238 RTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGK 317 (755)
Q Consensus 238 ~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGt 317 (755)
..|++.+..|++++.+.+|.|. .+.++||+++|..+|..++.|. ++.|||.+|+
T Consensus 185 ~~w~~~~~~Ll~~l~~~~~~p~-------------------------~~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~ 238 (396)
T PRK12735 185 EEWEAKILELMDAVDSYIPEPE-------------------------RAIDKPFLMPIEDVFSISGRGT-VVTGRVERGI 238 (396)
T ss_pred CcccccHHHHHHHHHhcCCCCC-------------------------ccCCCCeEEEEEEEEecCCceE-EEEEEEEecE
Confidence 2466667899999999998773 1346899999999999999997 8999999999
Q ss_pred ecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceeeecc-eeecCC
Q psy16810 318 VATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLVKTG-TITTFK 386 (755)
Q Consensus 318 L~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~~g-Tl~~~~ 386 (755)
++.||+|++++.+ ..++ .+|..+.. ..+++++|.|||.+++ .|++...+..| .|++.+
T Consensus 239 i~~gd~v~i~p~~--~~~~-----~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 239 VKVGDEVEIVGIK--ETQK-----TTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred EeCCCEEEEecCC--CCeE-----EEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 9999999988642 1111 14666543 2478999999999888 56654334444 676643
No 38
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.5e-32 Score=302.76 Aligned_cols=289 Identities=22% Similarity=0.312 Sum_probs=200.9
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
.+.+..+||+++||+|||||||+++|++...............+|+.++|++||+|++++...+.+
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-------------- 72 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-------------- 72 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC--------------
Confidence 345678999999999999999999999854321111111223689999999999999987665444
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE-EEEeccchhhhccc
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LFMNKMDRALLELQ 161 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-v~iNKiD~~~~~~~ 161 (755)
++++++|||||||.+|..++.+++..+|++++|||+.+|++.||+++|.++...++|.+ +++||+|+...+
T Consensus 73 ------~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~-- 144 (396)
T PRK00049 73 ------EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE-- 144 (396)
T ss_pred ------CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH--
Confidence 36789999999999999999999999999999999999999999999999999999986 589999985310
Q ss_pred CCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhcc
Q psy16810 162 LDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWL 241 (755)
Q Consensus 162 ~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~ 241 (755)
...+.+...+...+..+.. ..+.- .+ -.++.. .+...+ ....|+
T Consensus 145 ~~~~~~~~~i~~~l~~~~~-----~~~~~---~i---v~iSa~-----------~g~~~~--------------~~~~w~ 188 (396)
T PRK00049 145 ELLELVEMEVRELLSKYDF-----PGDDT---PI---IRGSAL-----------KALEGD--------------DDEEWE 188 (396)
T ss_pred HHHHHHHHHHHHHHHhcCC-----CccCC---cE---EEeecc-----------cccCCC--------------Cccccc
Confidence 0001111222222222110 00000 00 000000 000000 012455
Q ss_pred CChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCC
Q psy16810 242 PAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATG 321 (755)
Q Consensus 242 p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g 321 (755)
..+..||+++.+++|.|. .+.++||+++|..+|..++.|. ++.|||.+|++++|
T Consensus 189 ~~~~~ll~~l~~~~~~p~-------------------------~~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~g 242 (396)
T PRK00049 189 KKILELMDAVDSYIPTPE-------------------------RAIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVG 242 (396)
T ss_pred ccHHHHHHHHHhcCCCCC-------------------------CCCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecC
Confidence 556789999999998773 1236899999999999999997 89999999999999
Q ss_pred CeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceeeecc-eeecCC
Q psy16810 322 QKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLVKTG-TITTFK 386 (755)
Q Consensus 322 ~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~~g-Tl~~~~ 386 (755)
|.|++++.+. ++. .+|+.+... .+++++|.|||.+++ .|++...+..| .+++.+
T Consensus 243 d~v~i~p~~~--~~~-----~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 243 EEVEIVGIRD--TQK-----TTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred CEEEEeecCC--Cce-----EEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 9999876421 111 146666432 368999999999888 56543223344 676643
No 39
>KOG0460|consensus
Probab=100.00 E-value=2.9e-33 Score=282.06 Aligned_cols=286 Identities=27% Similarity=0.384 Sum_probs=192.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+.+-||+-|||+|||||||+.++..-.......+.-+..-.|..|+|+.|||||+++.+ .|+
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHv--eYe--------------- 113 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHV--EYE--------------- 113 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeee--eee---------------
Confidence 456789999999999999999988432111100011223347889999999999987654 443
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchhhhcccCC
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRALLELQLD 163 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~~~~~~~~ 163 (755)
....++.-+|||||.||+++|+.+...+|+|||||.|++|.++||++|+.+|++-|++. ++|+||.|... +
T Consensus 114 ---Ta~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-----d 185 (449)
T KOG0460|consen 114 ---TAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD-----D 185 (449)
T ss_pred ---ccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC-----C
Confidence 13556778999999999999999999999999999999999999999999999999976 66899999862 1
Q ss_pred HHHHHHHHH-HHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC
Q psy16810 164 AEDLYQTFQ-RIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP 242 (755)
Q Consensus 164 ~~~~~~~~~-~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p 242 (755)
++..+..+ ++.+.++. +-|+.+..+ + +... .|++--|. +-+... +
T Consensus 186 -~e~leLVEmE~RElLse--~gf~Gd~~P---v-----I~GS------AL~ALeg~-----~peig~------------~ 231 (449)
T KOG0460|consen 186 -PEMLELVEMEIRELLSE--FGFDGDNTP---V-----IRGS------ALCALEGR-----QPEIGL------------E 231 (449)
T ss_pred -HHHHHHHHHHHHHHHHH--cCCCCCCCC---e-----eecc------hhhhhcCC-----CccccH------------H
Confidence 22111100 11111111 011111100 0 0000 11110010 000000 0
Q ss_pred ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCC
Q psy16810 243 AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQ 322 (755)
Q Consensus 243 ~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~ 322 (755)
....|||++-+|+|.|. .+-+.||++.|-.+|+.+++|. ++.||+-.|+|++|+
T Consensus 232 aI~kLldavDsyip~P~-------------------------R~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~ 285 (449)
T KOG0460|consen 232 AIEKLLDAVDSYIPTPE-------------------------RDLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGD 285 (449)
T ss_pred HHHHHHHHHhccCCCcc-------------------------cccCCCceeehhheeeecCCce-EEEEEEeecccccCC
Confidence 12569999999999993 3457899999999999999999 899999999999999
Q ss_pred eEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceeeecc-eeecCC
Q psy16810 323 KARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLVKTG-TITTFK 386 (755)
Q Consensus 323 ~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~~g-Tl~~~~ 386 (755)
++.+.|.|.+ ++..+.-....+..+++|.|||-+++ .|++.-.++.| .++.++
T Consensus 286 e~eivG~~~~-----------lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pG 341 (449)
T KOG0460|consen 286 EVEIVGHNKT-----------LKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPG 341 (449)
T ss_pred EEEEeccCcc-----------eeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCC
Confidence 9999875422 12222222334467899999999876 57665445666 444443
No 40
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=2.9e-33 Score=286.97 Aligned_cols=218 Identities=33% Similarity=0.484 Sum_probs=172.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
||+++||+|+|||||+++|++.+|.+.+. ..| ++++|+.++|++||+|+.++...+.|+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~-~~~~D~~~~e~~rg~ti~~~~~~~~~~----------------- 62 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG-TTRTDTMELERQRGITIFSAVASFQWE----------------- 62 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC-cccCCCchhHhhCCCceeeeeEEEEEC-----------------
Confidence 89999999999999999999999988752 223 467999999999999999999999995
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAED 166 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~ 166 (755)
+++++|||||||.+|..++.++++.+|++++|+|+.+|++.|++.+|+++.+.++|+++|+||+|+..+++ .+
T Consensus 63 ---~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~----~~ 135 (237)
T cd04168 63 ---DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADL----EK 135 (237)
T ss_pred ---CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCH----HH
Confidence 78999999999999999999999999999999999999999999999999999999999999999986433 34
Q ss_pred HHHHHHHHhhhceeeEEEecC---CCCCC--cceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHH-Hhc
Q psy16810 167 LYQTFQRIVENVNVIIATYSD---DSGPM--GEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM-RTW 240 (755)
Q Consensus 167 ~~~~~~~ii~~v~~~~~~~~~---~~~~~--~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~ 240 (755)
....++..+.. ...+.++.. ..... ...+++|.+++.|+++|++|++ +..++.+++. ..+.+++. +++
T Consensus 136 ~~~~i~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~--~~~~~~~el~---~~l~~~~~~~~~ 209 (237)
T cd04168 136 VYQEIKEKLSS-DIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLE--GGPIEELELD---NELSARIAKRKV 209 (237)
T ss_pred HHHHHHHHHCC-CeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhC--CCCCCHHHHH---HHHHHHHHhCCe
Confidence 44433333322 111111110 00000 0125778999999999999998 4677777654 34555555 678
Q ss_pred cCC----------hHHHHHHHHhcCCCC
Q psy16810 241 LPA----------GEALLQMIAIHLPSP 258 (755)
Q Consensus 241 ~p~----------g~~LLd~i~~~lPsP 258 (755)
+|+ ...|||++++++|+|
T Consensus 210 ~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 210 FPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred EEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 883 489999999999998
No 41
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=5.1e-32 Score=300.95 Aligned_cols=284 Identities=24% Similarity=0.326 Sum_probs=195.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+.++||+++||+|||||||+++|+................+|..++|++||+|++++...+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~---------------- 121 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET---------------- 121 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC----------------
Confidence 4568999999999999999999996432111111111223589999999999999987766554
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchhhhcccCC
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRALLELQLD 163 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~~~~~~~~ 163 (755)
++++++|||||||.+|..++.+++..+|++++|||+.+|++.||++++.++...++|. |+++||||+..
T Consensus 122 ----~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------ 191 (447)
T PLN03127 122 ----AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------ 191 (447)
T ss_pred ----CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------
Confidence 3679999999999999999999999999999999999999999999999999999996 68899999853
Q ss_pred HHHHHHHH----HHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHh
Q psy16810 164 AEDLYQTF----QRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRT 239 (755)
Q Consensus 164 ~~~~~~~~----~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~ 239 (755)
.++..+.+ ...+..+. |..+ .+.++ .++. +...-|..... .
T Consensus 192 ~~~~~~~i~~~i~~~l~~~~-----~~~~-----~vpii-p~Sa--------~sa~~g~n~~~-----~----------- 236 (447)
T PLN03127 192 DEELLELVEMELRELLSFYK-----FPGD-----EIPII-RGSA--------LSALQGTNDEI-----G----------- 236 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhC-----CCCC-----cceEE-Eecc--------ceeecCCCccc-----c-----------
Confidence 22222222 22222111 0000 00000 0000 00000000000 0
Q ss_pred ccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEec
Q psy16810 240 WLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVA 319 (755)
Q Consensus 240 ~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~ 319 (755)
+ ..+..|++++.+++|.|. .+.++||+++|..+|..++.|. ++.|||.+|+++
T Consensus 237 ~-~~i~~Ll~~l~~~lp~p~-------------------------r~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~ 289 (447)
T PLN03127 237 K-NAILKLMDAVDEYIPEPV-------------------------RVLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIK 289 (447)
T ss_pred c-chHHHHHHHHHHhCCCCC-------------------------cccccceEeeEEEEEEcCCceE-EEEEEEEccEEe
Confidence 0 013579999999999773 1246799999999999999997 899999999999
Q ss_pred CCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceeeecc-eeecC
Q psy16810 320 TGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLVKTG-TITTF 385 (755)
Q Consensus 320 ~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~~g-Tl~~~ 385 (755)
+||.|++++++.....+ .+|..+... ..++++|.|||.+++ .|++...+..| .|++.
T Consensus 290 ~Gd~v~i~p~~~~g~~~-----~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 290 VGEEVEIVGLRPGGPLK-----TTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred cCCEEEEcccCCCCcEE-----EEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 99999988642210111 256666433 357899999999887 56654334445 66654
No 42
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=5.9e-33 Score=280.60 Aligned_cols=167 Identities=66% Similarity=1.025 Sum_probs=151.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
|||+|+||+|||||||+++|++.+|.++....|+.+++|+.++|++||+||+++.+++.|+..+.. ..++
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~----------~~~~ 70 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED----------KADG 70 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc----------ccCC
Confidence 899999999999999999999999998877778888999999999999999999999999632110 1123
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHHHH
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDLY 168 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~~~ 168 (755)
.++.++|||||||.+|..++..+++.+|+|++|||+.+|+..||+.+|+++...++|+++|+||+|+...++++++++.+
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~ 150 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAY 150 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHhhhceeeEEEe
Q psy16810 169 QTFQRIVENVNVIIATY 185 (755)
Q Consensus 169 ~~~~~ii~~v~~~~~~~ 185 (755)
.++.++++.+|.++..+
T Consensus 151 ~~~~~ii~~~n~~i~~~ 167 (222)
T cd01885 151 QRLARIIEQVNAIIGTY 167 (222)
T ss_pred HHHHHHHHHHhHHHHhc
Confidence 99999999998765444
No 43
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=1.8e-32 Score=285.64 Aligned_cols=226 Identities=25% Similarity=0.351 Sum_probs=171.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---c----cCcccccCCchhhhhhccccccceEEEEeeeCcccccccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---K----AGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFIT 79 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~----~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 79 (755)
++|||+|+||+|+|||||+++|++.+|.+.+. . .| ++++|+.++|++||+|+.++...+.|+
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~-~t~~D~~~~e~~rg~si~~~~~~~~~~---------- 69 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRK-HATSDWMEIEKQRGISVTSSVMQFEYR---------- 69 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCC-CccCCCcHHHHhCCCCeEEEEEEEeeC----------
Confidence 57999999999999999999999999988753 1 23 347999999999999999999999995
Q ss_pred CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhc
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLE 159 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~ 159 (755)
+++++|||||||.+|..++..+++.+|++|+|+|++.|++.|++.+|+++...++|+++|+||+|+..++
T Consensus 70 ----------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 70 ----------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD 139 (267)
T ss_pred ----------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999997644
Q ss_pred ccCCHHHHHHHH-----------------HHHhhhceeeEEEecCC-CC-CCc----ceEeehhhhcccHHHHHHHHHHh
Q psy16810 160 LQLDAEDLYQTF-----------------QRIVENVNVIIATYSDD-SG-PMG----EVRVFDSIMNYKKEEAESLLSKL 216 (755)
Q Consensus 160 ~~~~~~~~~~~~-----------------~~ii~~v~~~~~~~~~~-~~-~~~----~~~l~e~v~~~~~e~l~~lle~~ 216 (755)
+....+++...+ .++++.+....+.|..+ .+ ... .-.+.|.+++.+++++++|++
T Consensus 140 ~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e-- 217 (267)
T cd04169 140 PLELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLRE-- 217 (267)
T ss_pred HHHHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhC--
Confidence 211122222222 12233333334444221 11 000 013447889999999999888
Q ss_pred CCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCC
Q psy16810 217 GIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSP 258 (755)
Q Consensus 217 ~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP 258 (755)
+..++.++.. ..+.+++. +.++|+ .+.|||+|++|+|+|
T Consensus 218 ~~~~~~~~~~---~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 218 ELELLEGAGP---EFDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred CCccchhhhH---HHhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 3455544422 23344444 678883 489999999999998
No 44
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.98 E-value=2.4e-31 Score=298.40 Aligned_cols=286 Identities=21% Similarity=0.242 Sum_probs=193.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccc----------cCcc-------cccCCchhhhhhccccccceEEEE
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAK----------AGET-------RFTDTRKDEQERCITIKSTAISMY 67 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-------~~~d~~~~E~~rgiTi~~~~~~~~ 67 (755)
.+...||+|+||+|||||||+++||+.+|.+++.. .|++ .++|+.++|++||+||+++...+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 45678999999999999999999999999987521 4543 379999999999999998877776
Q ss_pred eeeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-e
Q psy16810 68 FELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-P 146 (755)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ 146 (755)
|+ +++++|||||||.+|..++..+++.+|+|++|||+.+|+..||++++..+...++| +
T Consensus 104 ~~--------------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~i 163 (474)
T PRK05124 104 TE--------------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHL 163 (474)
T ss_pred cC--------------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCce
Confidence 64 78999999999999999999999999999999999999999999999999999975 6
Q ss_pred EEEEeccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccc
Q psy16810 147 VLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKE 226 (755)
Q Consensus 147 iv~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~ 226 (755)
|+++||||+...+ .....++...+...+..+.. + . . ..+ -.++.. .|..+... .
T Consensus 164 IvvvNKiD~~~~~-~~~~~~i~~~l~~~~~~~~~----~-~-~---~~i---ipvSA~-----------~g~ni~~~--~ 217 (474)
T PRK05124 164 VVAVNKMDLVDYS-EEVFERIREDYLTFAEQLPG----N-L-D---IRF---VPLSAL-----------EGDNVVSQ--S 217 (474)
T ss_pred EEEEEeeccccch-hHHHHHHHHHHHHHHHhcCC----C-C-C---ceE---EEEEee-----------cCCCcccc--c
Confidence 7899999986311 00011222222222221110 0 0 0 000 000100 01111100 0
Q ss_pred cchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCc
Q psy16810 227 KDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGR 306 (755)
Q Consensus 227 ~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~ 306 (755)
. ...|+ .|..|++++ +.+|.|. .+.+.||++.|..++...+...
T Consensus 218 --------~-~~~wy-~G~tLl~~L-~~i~~~~-------------------------~~~~~p~r~~I~~v~~~~~~~~ 261 (474)
T PRK05124 218 --------E-SMPWY-SGPTLLEVL-ETVDIQR-------------------------VVDAQPFRFPVQYVNRPNLDFR 261 (474)
T ss_pred --------c-ccccc-chhhHHHHH-hhcCCCC-------------------------CCCCCCceeeEEEEEecCCccc
Confidence 0 01455 346788855 4566552 1246799998888764322222
Q ss_pred eeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceee-ecceeecC
Q psy16810 307 FYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLV-KTGTITTF 385 (755)
Q Consensus 307 ~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~-~~gTl~~~ 385 (755)
-..|||.+|+|+.||+|++.+. +.. .+|+.|... ..+++.|.|||.|++.--+...+ +|+.|++.
T Consensus 262 -g~~G~V~sG~l~~Gd~v~i~P~----~~~-----~~VksI~~~----~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~ 327 (474)
T PRK05124 262 -GYAGTLASGVVKVGDRVKVLPS----GKE-----SNVARIVTF----DGDLEEAFAGEAITLVLEDEIDISRGDLLVAA 327 (474)
T ss_pred -ceEEEEEeEEEecCCEEEEecC----Cce-----EEEEEEEEc----CccccCcCCCCEEEEEeCCccccCCccEEECC
Confidence 2469999999999999998764 222 256776533 24689999999998864222113 34477765
Q ss_pred C
Q psy16810 386 K 386 (755)
Q Consensus 386 ~ 386 (755)
.
T Consensus 328 ~ 328 (474)
T PRK05124 328 D 328 (474)
T ss_pred C
Confidence 4
No 45
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.98 E-value=3.3e-31 Score=308.32 Aligned_cols=313 Identities=19% Similarity=0.259 Sum_probs=223.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+|+||+|||||||+++|... .+ . ....+|||+..+...+.|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~--~v----------~----~~e~~GIT~~iga~~v~~~---------------- 335 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT--NV----------A----AGEAGGITQHIGAYQVETN---------------- 335 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--Cc----------c----ccccCceeeeccEEEEEEC----------------
Confidence 35689999999999999999999431 11 1 1124689998888878774
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
++.|+|||||||.+|...+.++++.+|++|||||+.+|+.+||.++|.++...++|+||++||||+... +..
T Consensus 336 ----~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a----~~e 407 (787)
T PRK05306 336 ----GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGA----NPD 407 (787)
T ss_pred ----CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccccc----CHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999652 222
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChH
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGE 245 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~ 245 (755)
.+...+.. .+.....|.. .+.++. ++... |. +..
T Consensus 408 ~V~~eL~~----~~~~~e~~g~------~vp~vp-vSAkt-----------G~------------------------GI~ 441 (787)
T PRK05306 408 RVKQELSE----YGLVPEEWGG------DTIFVP-VSAKT-----------GE------------------------GID 441 (787)
T ss_pred HHHHHHHH----hcccHHHhCC------CceEEE-EeCCC-----------CC------------------------Cch
Confidence 22222211 0000000000 000000 00000 00 113
Q ss_pred HHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEE
Q psy16810 246 ALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKAR 325 (755)
Q Consensus 246 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~ 325 (755)
.|++.+.... +. + ...++++.|+.++||+++.+++.|. ++++||++|+|+.||.|+
T Consensus 442 eLle~I~~~~----e~----~---------------~l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv 497 (787)
T PRK05306 442 ELLEAILLQA----EV----L---------------ELKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVV 497 (787)
T ss_pred HHHHhhhhhh----hh----h---------------hcccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEE
Confidence 4555554211 00 0 0124567899999999999999998 999999999999999998
Q ss_pred EccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCc-----------------
Q psy16810 326 IMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDA----------------- 388 (755)
Q Consensus 326 i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~----------------- 388 (755)
+. + +.++++.+.+....++++|.|||+|+|.||++.-..|+||+...+.
T Consensus 498 ~g-~-------------~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~ 563 (787)
T PRK05306 498 AG-T-------------TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREK 563 (787)
T ss_pred EC-C-------------cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 52 1 3567777888777899999999999999998853446688733211
Q ss_pred -------ccccccccc----CCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhH
Q psy16810 389 -------HNLRVMKFS----VSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELH 450 (755)
Q Consensus 389 -------~~~~~~~~~----~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElH 450 (755)
..+..+..+ ..+.+.+.|.+...+..+.|..+|.+|..+++.+.+ +-.|.|.+.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i--------~~~~vG~it 628 (787)
T PRK05306 564 KLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI--------IHSGVGAIT 628 (787)
T ss_pred HhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE--------EeeccCCCC
Confidence 011111101 113689999999999999999999999999999976 445677774
No 46
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.98 E-value=1.4e-31 Score=296.11 Aligned_cols=280 Identities=21% Similarity=0.263 Sum_probs=188.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccc----------cCcc-------cccCCchhhhhhccccccceEEEEeeeCc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAK----------AGET-------RFTDTRKDEQERCITIKSTAISMYFELDD 72 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-------~~~d~~~~E~~rgiTi~~~~~~~~~~~~~ 72 (755)
||+++||+|||||||+++||+.+|.+++.. .|++ +++|+.++|++||+|++.+...+.|+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 799999999999999999999999988632 4443 47999999999999999998888774
Q ss_pred cccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEe
Q psy16810 73 KDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMN 151 (755)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iN 151 (755)
+++++|||||||.+|..++..+++.+|+|++|||+.+|++.||+++|..+...++| +|+|+|
T Consensus 79 -----------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviN 141 (406)
T TIGR02034 79 -----------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVN 141 (406)
T ss_pred -----------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999986 577999
Q ss_pred ccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHH
Q psy16810 152 KMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKA 231 (755)
Q Consensus 152 KiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~ 231 (755)
|||+...+ ....+++...+..++...... ++.+ -.++... |..+....
T Consensus 142 K~D~~~~~-~~~~~~i~~~~~~~~~~~~~~------------~~~i-ipiSA~~-----------g~ni~~~~------- 189 (406)
T TIGR02034 142 KMDLVDYD-EEVFENIKKDYLAFAEQLGFR------------DVTF-IPLSALK-----------GDNVVSRS------- 189 (406)
T ss_pred ecccccch-HHHHHHHHHHHHHHHHHcCCC------------CccE-EEeeccc-----------CCCCcccc-------
Confidence 99986411 000111222222222211100 0000 0011111 11111000
Q ss_pred HHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEE
Q psy16810 232 LLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFG 311 (755)
Q Consensus 232 l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~ 311 (755)
-...|+ .|..|++++.. +|.|. .+.++||++.|..++.....+. -..|
T Consensus 190 ----~~~~wy-~g~tL~~~L~~-~~~~~-------------------------~~~~~p~r~~i~~v~~~~~~~~-g~~G 237 (406)
T TIGR02034 190 ----ESMPWY-SGPTLLEILET-VEVER-------------------------DAQDLPLRFPVQYVNRPNLDFR-GYAG 237 (406)
T ss_pred ----cCCCcc-chhHHHHHHHh-cCCCC-------------------------CcCCCCcccceEEEeecCCCcE-EEEE
Confidence 001354 23567777754 44442 1235788887777654332222 2569
Q ss_pred EEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeee-cceeecCC
Q psy16810 312 RVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVK-TGTITTFK 386 (755)
Q Consensus 312 RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~-~gTl~~~~ 386 (755)
+|.+|+|++||.|++.+.+ .. .+|+.+... ..++++|.|||.+++.--+...+. |+.|++++
T Consensus 238 ~v~~G~l~~gd~v~i~P~~----~~-----~~VksI~~~----~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~ 300 (406)
T TIGR02034 238 TIASGSVHVGDEVVVLPSG----RS-----SRVARIVTF----DGDLEQARAGQAVTLTLDDEIDISRGDLLAAAD 300 (406)
T ss_pred EEecceeecCCEEEEeCCC----cE-----EEEEEEEEC----CcccCEeCCCCEEEEEECCccccCCccEEEcCC
Confidence 9999999999999987642 21 256666433 257999999999988532211123 44666653
No 47
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=1.1e-30 Score=292.16 Aligned_cols=282 Identities=25% Similarity=0.387 Sum_probs=200.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccc----------cCc-----ccccCCchhhhhhccccccceEEEEeee
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAK----------AGE-----TRFTDTRKDEQERCITIKSTAISMYFEL 70 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 70 (755)
+...||+++||+|||||||+++|++.+|.++... .|+ .+++|+.++|++||+|++.....+.|+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 5679999999999999999999999999987531 233 246899999999999999988887774
Q ss_pred CccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCC--cceehHHHHHHHHHHcCCc-eE
Q psy16810 71 DDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS--GVCVQTETVLRQAIAERIK-PV 147 (755)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~--g~~~qt~~~~~~~~~~~ip-~i 147 (755)
++.++|||||||.+|..++.++++.+|++++|||+++ |+..||++++.++...++| ++
T Consensus 83 -------------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~ii 143 (425)
T PRK12317 83 -------------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLI 143 (425)
T ss_pred -------------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEE
Confidence 7899999999999999999999999999999999999 9999999999999999984 78
Q ss_pred EEEeccchhhhcccCCHH---HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccc
Q psy16810 148 LFMNKMDRALLELQLDAE---DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPED 224 (755)
Q Consensus 148 v~iNKiD~~~~~~~~~~~---~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~ 224 (755)
+++||+|+.. .+.+ ...+.+..++...... .+ .+.++ .++....+.+++..+
T Consensus 144 vviNK~Dl~~----~~~~~~~~~~~~i~~~l~~~g~~-----~~-----~~~ii-~iSA~~g~gi~~~~~---------- 198 (425)
T PRK12317 144 VAINKMDAVN----YDEKRYEEVKEEVSKLLKMVGYK-----PD-----DIPFI-PVSAFEGDNVVKKSE---------- 198 (425)
T ss_pred EEEEcccccc----ccHHHHHHHHHHHHHHHHhhCCC-----cC-----cceEE-EeecccCCCcccccc----------
Confidence 8999999864 1111 1222233322221100 00 00000 011111111111100
Q ss_pred cccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCC
Q psy16810 225 KEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDK 304 (755)
Q Consensus 225 ~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~ 304 (755)
...|+. |..|++++. .+|.|. .+.++||+++|..++..++.
T Consensus 199 ------------~~~wy~-g~~L~~~l~-~~~~~~-------------------------~~~~~p~r~~i~~~~~~~g~ 239 (425)
T PRK12317 199 ------------NMPWYN-GPTLLEALD-NLKPPE-------------------------KPTDKPLRIPIQDVYSISGV 239 (425)
T ss_pred ------------CCCccc-HHHHHHHHh-cCCCCc-------------------------cccCCCcEEEEEEEEeeCCC
Confidence 014653 477999874 466652 12468999999999999999
Q ss_pred CceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceeeecc-e
Q psy16810 305 GRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLVKTG-T 381 (755)
Q Consensus 305 G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~~g-T 381 (755)
|. ++.|||.+|+++.||.|++.+.+ .. .+|..|... ..+++.|.|||.|++ .+++...+..| .
T Consensus 240 G~-vv~G~v~~G~v~~Gd~v~i~P~~----~~-----~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~~~i~rG~v 305 (425)
T PRK12317 240 GT-VPVGRVETGVLKVGDKVVFMPAG----VV-----GEVKSIEMH----HEELPQAEPGDNIGFNVRGVGKKDIKRGDV 305 (425)
T ss_pred eE-EEEEEEeeccEecCCEEEECCCC----Ce-----EEEEEEEEC----CcccCEECCCCeEEEEECCCCHHHccCccE
Confidence 98 89999999999999999987643 11 156666432 368999999999877 35542223334 5
Q ss_pred eecC
Q psy16810 382 ITTF 385 (755)
Q Consensus 382 l~~~ 385 (755)
+++.
T Consensus 306 l~~~ 309 (425)
T PRK12317 306 CGHP 309 (425)
T ss_pred ecCC
Confidence 5554
No 48
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.97 E-value=2.7e-30 Score=288.80 Aligned_cols=286 Identities=26% Similarity=0.379 Sum_probs=201.5
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-----ccccCCchhhhhhccccccceEEE
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-----TRFTDTRKDEQERCITIKSTAISM 66 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~ 66 (755)
|...+.++||+++||+|||||||+++|++.+|.++.. ..|+ ..++|..++|++||+|++.+...+
T Consensus 1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 4456789999999999999999999999999988642 1222 246899999999999999988877
Q ss_pred EeeeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc---ceehHHHHHHHHHHcC
Q psy16810 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG---VCVQTETVLRQAIAER 143 (755)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g---~~~qt~~~~~~~~~~~ 143 (755)
.|. ++.++|+|||||.+|...+..+++.+|++++|||+++| ...||.+++..+...+
T Consensus 81 ~~~--------------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~ 140 (426)
T TIGR00483 81 ETD--------------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG 140 (426)
T ss_pred ccC--------------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC
Confidence 764 78999999999999999999999999999999999999 8899999888888888
Q ss_pred C-ceEEEEeccchhhhcccCCHH---HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCC
Q psy16810 144 I-KPVLFMNKMDRALLELQLDAE---DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIE 219 (755)
Q Consensus 144 i-p~iv~iNKiD~~~~~~~~~~~---~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~ 219 (755)
+ |+|+++||+|+.. .+.+ +....+...++...... . .+.++. ++..+.+.+++...
T Consensus 141 ~~~iIVviNK~Dl~~----~~~~~~~~~~~ei~~~~~~~g~~~-----~-----~~~~i~-iSA~~g~ni~~~~~----- 200 (426)
T TIGR00483 141 INQLIVAINKMDSVN----YDEEEFEAIKKEVSNLIKKVGYNP-----D-----TVPFIP-ISAWNGDNVIKKSE----- 200 (426)
T ss_pred CCeEEEEEEChhccC----ccHHHHHHHHHHHHHHHHHcCCCc-----c-----cceEEE-eecccccccccccc-----
Confidence 7 4678999999853 1222 22233333333221100 0 000000 01111111111100
Q ss_pred CCccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeee
Q psy16810 220 LKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMV 299 (755)
Q Consensus 220 l~~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~ 299 (755)
...|+- |..|++++.. +|+|. .+.++||+++|..++
T Consensus 201 -----------------~~~w~~-g~~l~~~l~~-~~~~~-------------------------~~~~~p~r~~i~~v~ 236 (426)
T TIGR00483 201 -----------------NTPWYK-GKTLLEALDA-LEPPE-------------------------KPTDKPLRIPIQDVY 236 (426)
T ss_pred -----------------CCcccc-chHHHHHHhc-CCCCC-------------------------CccCCCcEEEEEEEE
Confidence 013553 4679999854 55552 124689999999999
Q ss_pred ccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccceee
Q psy16810 300 PTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQFLV 377 (755)
Q Consensus 300 ~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~ 377 (755)
..++.|. ++.|||.+|+++.||.|.+.+.+ .. .+|+.|... ..++++|.|||+|++ .+++...+
T Consensus 237 ~~~g~G~-vv~G~v~~G~i~~gd~v~i~P~~----~~-----~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~~~~i 302 (426)
T TIGR00483 237 SITGVGT-VPVGRVETGVLKPGDKVVFEPAG----VS-----GEVKSIEMH----HEQIEQAEPGDNIGFNVRGVSKKDI 302 (426)
T ss_pred ecCCCeE-EEEEEEccceeecCCEEEECCCC----cE-----EEEEEEEEC----CcccCEEcCCCEEEEEECCCChhhc
Confidence 9999998 89999999999999999987642 21 256666432 367999999999887 45433223
Q ss_pred ecc-eeecC
Q psy16810 378 KTG-TITTF 385 (755)
Q Consensus 378 ~~g-Tl~~~ 385 (755)
..| .|++.
T Consensus 303 ~rG~vl~~~ 311 (426)
T TIGR00483 303 RRGDVCGHP 311 (426)
T ss_pred ccceEEecC
Confidence 444 55543
No 49
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.97 E-value=2.9e-30 Score=286.00 Aligned_cols=264 Identities=20% Similarity=0.245 Sum_probs=178.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEe-eeC--ccccccccCCC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYF-ELD--DKDMVFITNPD 82 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~-~~~--~~~~~~~~~~~ 82 (755)
....||+++||+|||||||+++|.. ..+|.+++|++|||||+.+...+.| .++ ..+..+...++
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg-------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~ 98 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSG-------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS 98 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhC-------------CCcccchhhHHhCCchhccccccccccCcccCCcccccccCC
Confidence 4568999999999999999999931 2578899999999999988776643 110 00000000000
Q ss_pred ----ccc------cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-ceehHHHHHHHHHHcCCc-eEEEE
Q psy16810 83 ----QTA------KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-VCVQTETVLRQAIAERIK-PVLFM 150 (755)
Q Consensus 83 ----~~~------~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~ip-~iv~i 150 (755)
... ...-.+.++|||||||.+|.+++.++++.+|+|++||||.+| +++||++++..+...++| .|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 99 SKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred CcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 000 001135899999999999999999999999999999999997 799999999999999996 57899
Q ss_pred eccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchH
Q psy16810 151 NKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGK 230 (755)
Q Consensus 151 NKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~ 230 (755)
||||+.. .++....+..+.+. +..+... .
T Consensus 179 NKiDlv~------~~~~~~~~~ei~~~-----------------------------------l~~~~~~--~-------- 207 (460)
T PTZ00327 179 NKIDLVK------EAQAQDQYEEIRNF-----------------------------------VKGTIAD--N-------- 207 (460)
T ss_pred ecccccC------HHHHHHHHHHHHHH-----------------------------------HHhhccC--C--------
Confidence 9999853 22222222222111 1110000 0
Q ss_pred HHHHHHHHhccC-------ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccC-
Q psy16810 231 ALLKVVMRTWLP-------AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTS- 302 (755)
Q Consensus 231 ~l~~~~~~~~~p-------~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~- 302 (755)
..++| ....|++++.+.+|.|. .+.++||+++|..+|...
T Consensus 208 -------~~iipVSA~~G~nI~~Ll~~L~~~lp~~~-------------------------r~~~~p~r~~Idr~F~V~~ 255 (460)
T PTZ00327 208 -------APIIPISAQLKYNIDVVLEYICTQIPIPK-------------------------RDLTSPPRMIVIRSFDVNK 255 (460)
T ss_pred -------CeEEEeeCCCCCCHHHHHHHHHhhCCCCC-------------------------CCCCCCcEEEEEEEEeecc
Confidence 00111 12578888888888772 134679999999877543
Q ss_pred -------CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCccccc----ccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 303 -------DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLY----EKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 303 -------~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~----~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
+.|. ++.|+|.+|++++||.|.+.+.+.......++. ..+|..|.. ...++++|.|||.++|.
T Consensus 256 ~g~~~~~~~Gt-Vv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~----~~~~v~~a~aG~~vai~ 329 (460)
T PTZ00327 256 PGEDIENLKGG-VAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA----ENNELQYAVPGGLIGVG 329 (460)
T ss_pred cCCcccCCceE-EEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE----CCeECCEEcCCCEEEEE
Confidence 3677 899999999999999999987532100011110 124666643 34789999999999985
No 50
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.4e-30 Score=255.29 Aligned_cols=335 Identities=22% Similarity=0.278 Sum_probs=225.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEE-eeeCcccccccc------
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMY-FELDDKDMVFIT------ 79 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~------ 79 (755)
..-||+++||+|||||||+.+|. ..++|.+.+|.+|||||+....... |+|.+ |...+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~Als-------------GvwT~~hseElkRgitIkLGYAd~~i~kC~~--c~~~~~y~~~~ 73 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALS-------------GVWTDRHSEELKRGITIKLGYADAKIYKCPE--CYRPECYTTEP 73 (415)
T ss_pred cceEeeeeeecccchhhheehhh-------------ceeeechhHHHhcCcEEEeccccCceEeCCC--CCCCcccccCC
Confidence 46899999999999999999992 2479999999999999998865544 33222 21111
Q ss_pred -CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHHcCCc-eEEEEeccchh
Q psy16810 80 -NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAERIK-PVLFMNKMDRA 156 (755)
Q Consensus 80 -~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~ip-~iv~iNKiD~~ 156 (755)
|+.......--+++.|+|+|||.-++..|.++...+|+|+|||+|++.+ |+||++|+-.+.-.|++ +|++.||+|+.
T Consensus 74 ~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 74 KCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred CCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 1111111123468999999999999999999999999999999999875 99999999999999984 57899999994
Q ss_pred hhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q psy16810 157 LLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVV 236 (755)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~ 236 (755)
+.+++.+++++|.+.+.-. +++. .-+...++..+.+
T Consensus 154 ------~~E~AlE~y~qIk~FvkGt-------------------~Ae~--aPIIPiSA~~~~N----------------- 189 (415)
T COG5257 154 ------SRERALENYEQIKEFVKGT-------------------VAEN--APIIPISAQHKAN----------------- 189 (415)
T ss_pred ------cHHHHHHHHHHHHHHhccc-------------------ccCC--CceeeehhhhccC-----------------
Confidence 6678888888877765321 1111 0111222211111
Q ss_pred HHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCC--------CCcee
Q psy16810 237 MRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSD--------KGRFY 308 (755)
Q Consensus 237 ~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~--------~G~~l 308 (755)
.+.|+++|.+++|.|. .|.++|.+++|.+.|.... .|. +
T Consensus 190 -------IDal~e~i~~~IptP~-------------------------rd~~~~p~m~v~RSFDVNkPGt~~~~L~GG-V 236 (415)
T COG5257 190 -------IDALIEAIEKYIPTPE-------------------------RDLDKPPRMYVARSFDVNKPGTPPEELKGG-V 236 (415)
T ss_pred -------HHHHHHHHHHhCCCCc-------------------------cCCCCCceEEEEeecccCCCCCCHHHccCc-e
Confidence 2679999999999993 4678899999999886432 455 7
Q ss_pred EEEEEEEeEecCCCeEEEccCCCCCCCccccccccc-ceEEEeccCceeeeccccCCCeEEe-ccccceeeecceeecCC
Q psy16810 309 AFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAI-QRTILMMGRYVEAIEDVPSGNICGL-VGVDQFLVKTGTITTFK 386 (755)
Q Consensus 309 ~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i-~~l~~~~g~~~~~v~~a~AGdIvai-~gl~~~~~~~gTl~~~~ 386 (755)
.-|-+..|.|+.||.+.+.+.- ...+..+.....+ ..+..++ ....++++|.+|-.+++ ++|+.+++++|-|+..-
T Consensus 237 iGGsl~~G~l~vGDEIEIrPGi-~v~k~~k~~~~pi~T~i~Sl~-ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V 314 (415)
T COG5257 237 IGGSLVQGVLRVGDEIEIRPGI-VVEKGGKTVWEPITTEIVSLQ-AGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQV 314 (415)
T ss_pred ecceeeeeeEecCCeEEecCCe-EeecCCceEEEEeeEEEEEEE-eCCeeeeeccCCceEEEecccCcchhhhhhhcccc
Confidence 7899999999999999986531 1111111111111 2222222 33478999999999988 48988888777665421
Q ss_pred CccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechh
Q psy16810 387 DAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGEL 449 (755)
Q Consensus 387 ~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GEl 449 (755)
. ..+. .+| +...++.+|.. -|.++.-.+-.+++..-.++|.++.-.|--
T Consensus 315 ~--G~pG-~lP-pv~~~~~ie~~----------LL~RvvG~~~e~kvepik~~E~Lml~VGta 363 (415)
T COG5257 315 V--GKPG-TLP-PVWTSIRIEYH----------LLERVVGTKEELKVEPIKTNEVLMLNVGTA 363 (415)
T ss_pred c--cCCC-CCC-CceEEEEEEee----------ehhhhhCcccccccccccCCCeEEEEeecc
Confidence 1 1111 122 33445555531 234444445556666556788888776643
No 51
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=7.2e-29 Score=283.12 Aligned_cols=311 Identities=20% Similarity=0.298 Sum_probs=215.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+.++|+++||+|||||||+++|... . +. .+..+|+|+......+.|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~--~----------v~----~~e~~GIT~~ig~~~v~~~----------------- 132 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKT--K----------VA----QGEAGGITQHIGAYHVENE----------------- 132 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhC--C----------cc----cccCCceeecceEEEEEEC-----------------
Confidence 4579999999999999999999432 1 11 1223578888777777774
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAED 166 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~ 166 (755)
++..++|||||||.+|...+.++++.+|++|+|+|+.+|+++||.++|+++...++|+|+++||+|+... .+++
T Consensus 133 --~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~----~~e~ 206 (587)
T TIGR00487 133 --DGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA----NPDR 206 (587)
T ss_pred --CCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC----CHHH
Confidence 2338999999999999999999999999999999999999999999999999999999999999999652 2333
Q ss_pred HHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChHH
Q psy16810 167 LYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEA 246 (755)
Q Consensus 167 ~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~~ 246 (755)
+...+.. .+.....|.. .+.++. ++....+. .+.
T Consensus 207 v~~~L~~----~g~~~~~~~~------~~~~v~-iSAktGeG-----------------------------------I~e 240 (587)
T TIGR00487 207 VKQELSE----YGLVPEDWGG------DTIFVP-VSALTGDG-----------------------------------IDE 240 (587)
T ss_pred HHHHHHH----hhhhHHhcCC------CceEEE-EECCCCCC-----------------------------------hHH
Confidence 3222211 0000000000 000000 01000011 133
Q ss_pred HHHHHHhc--CCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeE
Q psy16810 247 LLQMIAIH--LPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324 (755)
Q Consensus 247 LLd~i~~~--lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v 324 (755)
|++.+... ++.+ ..+++.|+.++|++++.+++.|. ++++||++|+|+.||.|
T Consensus 241 Ll~~I~~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~i 294 (587)
T TIGR00487 241 LLDMILLQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIV 294 (587)
T ss_pred HHHhhhhhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEE
Confidence 44444311 1110 13567899999999999999998 99999999999999999
Q ss_pred EEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCc----------------
Q psy16810 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDA---------------- 388 (755)
Q Consensus 325 ~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~---------------- 388 (755)
.+.+. . .+|..++...| ..+++|.||++|.+.|++.....|+++....+.
T Consensus 295 v~~~~------~-----~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~ 360 (587)
T TIGR00487 295 VVGAA------Y-----GRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQ 360 (587)
T ss_pred EECCC------c-----cEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 86431 1 14555554444 568999999999999998753446676532111
Q ss_pred --------cccccccc----cCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhH
Q psy16810 389 --------HNLRVMKF----SVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELH 450 (755)
Q Consensus 389 --------~~~~~~~~----~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElH 450 (755)
..+..+.. ...|.+.+.|++...+..++|.++|.+|..++|++.+. -.|.|.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~--------~~~vG~i~ 426 (587)
T TIGR00487 361 KALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI--------HSGVGGIT 426 (587)
T ss_pred HhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE--------EeecCCCc
Confidence 00111110 01388999999999999999999999999999999873 44577764
No 52
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.96 E-value=1e-28 Score=259.51 Aligned_cols=219 Identities=32% Similarity=0.465 Sum_probs=169.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
||+|+||+|+|||||+++|++.+|.+.+. ..| ++.+|+.++|++|++|+.++...+.|+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~r~~ti~~~~~~~~~~----------------- 62 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG-TTVSDYDPEEIKRKMSISTSVAPLEWK----------------- 62 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC-cccCCCCHHHHhhcccccceeEEEEEC-----------------
Confidence 79999999999999999999999887642 233 457899999999999999999999885
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAED 166 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~ 166 (755)
++.+++||||||.+|..++..+++.+|++++|+|++.|...+|..+|+++...++|.++|+||+|+...++ .+
T Consensus 63 ---~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~----~~ 135 (268)
T cd04170 63 ---GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADF----DK 135 (268)
T ss_pred ---CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCH----HH
Confidence 78999999999999999999999999999999999999999999999999999999999999999986432 33
Q ss_pred HHHHHHHHhhh---------------------ceeeEEEecCCCCC-Ccc-------------eEeehhhhcccHHHHHH
Q psy16810 167 LYQTFQRIVEN---------------------VNVIIATYSDDSGP-MGE-------------VRVFDSIMNYKKEEAES 211 (755)
Q Consensus 167 ~~~~~~~ii~~---------------------v~~~~~~~~~~~~~-~~~-------------~~l~e~v~~~~~e~l~~ 211 (755)
....++..... +....+.|..+... ... -.+.|.+++.|++++++
T Consensus 136 ~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~ 215 (268)
T cd04170 136 TLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEK 215 (268)
T ss_pred HHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 33333332221 11111122111000 000 05668889999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCC
Q psy16810 212 LLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSP 258 (755)
Q Consensus 212 lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP 258 (755)
|++ +..++.+++. ..+.+++. +.++|+ .+.|||++.+++|+|
T Consensus 216 yl~--~~~~~~~~l~---~~l~~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 216 YLE--GGELTEEELH---AGLRRALRAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HhC--CCCCCHHHHH---HHHHHHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 998 4677776654 34555555 567773 489999999999998
No 53
>KOG0458|consensus
Probab=99.96 E-value=4.4e-28 Score=261.96 Aligned_cols=286 Identities=27% Similarity=0.375 Sum_probs=204.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-----ccccCCchhhhhhccccccceEEEEee
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-----TRFTDTRKDEQERCITIKSTAISMYFE 69 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 69 (755)
++...|.+++||+|+|||||+++|||..|.++.+ ..|+ .+++|...+||+||+|+..+...|.-
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes- 252 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES- 252 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-
Confidence 3457899999999999999999999999999853 2333 23589999999999999988877653
Q ss_pred eCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-------eehHHHHHHHHHHc
Q psy16810 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-------CVQTETVLRQAIAE 142 (755)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~ 142 (755)
+.+.++|+|+|||.||..+|+++...+|.|+|||||+.|. ..||++|...++.+
T Consensus 253 -------------------~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L 313 (603)
T KOG0458|consen 253 -------------------KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL 313 (603)
T ss_pred -------------------CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc
Confidence 4789999999999999999999999999999999999774 57999999999999
Q ss_pred CC-ceEEEEeccchhhhcccCCHHHHHHHHHHHhhhceeeE-EE--ecCCCCCCcceEeehhhhcccHHHHHHHHHHhCC
Q psy16810 143 RI-KPVLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVII-AT--YSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGI 218 (755)
Q Consensus 143 ~i-p~iv~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~-~~--~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~ 218 (755)
|+ ..||+|||||... |. +.+|..|...++.++ .. |.+..-. |-.+++. .|.
T Consensus 314 gi~qlivaiNKmD~V~------Ws--q~RF~eIk~~l~~fL~~~~gf~es~v~------FIPiSGl-----------~Ge 368 (603)
T KOG0458|consen 314 GISQLIVAINKMDLVS------WS--QDRFEEIKNKLSSFLKESCGFKESSVK------FIPISGL-----------SGE 368 (603)
T ss_pred CcceEEEEeecccccC------cc--HHHHHHHHHHHHHHHHHhcCcccCCcc------eEecccc-----------cCC
Confidence 99 5688999999853 33 245555555544322 11 1111000 0011111 122
Q ss_pred CCCccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEee
Q psy16810 219 ELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKM 298 (755)
Q Consensus 219 ~l~~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~ 298 (755)
+|...+.. .-...||- |..||+.|-. +-.|. .+.+.||++-|..+
T Consensus 369 NL~k~~~~--------~~l~~WY~-Gp~LL~~id~-~~~p~-------------------------~~~~kPl~ltIsdi 413 (603)
T KOG0458|consen 369 NLIKIEQE--------NELSQWYK-GPTLLSQIDS-FKIPE-------------------------RPIDKPLRLTISDI 413 (603)
T ss_pred cccccccc--------hhhhhhhc-CChHHHHHhh-ccCCC-------------------------CcccCCeEEEhhhe
Confidence 22211100 02357874 3679999876 44442 11356999999999
Q ss_pred eccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--ccccee
Q psy16810 299 VPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GVDQFL 376 (755)
Q Consensus 299 ~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~~ 376 (755)
+..+..| +.++|||.||.+.+||+||++++ ... ..|..+. +...+...+.|||-|.+. |+....
T Consensus 414 ~~~~~~~-~~i~gkiesG~iq~gqkl~i~~s----~e~-----~~vk~l~----~~~~~~~~a~AGD~Vsl~L~~i~~n~ 479 (603)
T KOG0458|consen 414 YPLPSSG-VSISGKIESGYIQPGQKLYIMTS----RED-----ATVKGLT----SNDEPKTWAVAGDNVSLKLPGILPNL 479 (603)
T ss_pred eecCCCe-eEEEEEEeccccccCCEEEEecC----cce-----EEEEeee----cCCCcceeEeeCCEEEEecCccChhh
Confidence 9999888 48999999999999999999764 111 1344442 234678899999998764 655555
Q ss_pred eecceeec
Q psy16810 377 VKTGTITT 384 (755)
Q Consensus 377 ~~~gTl~~ 384 (755)
+.+|.+.+
T Consensus 480 v~~g~i~~ 487 (603)
T KOG0458|consen 480 VQVGDIAD 487 (603)
T ss_pred cccceeee
Confidence 66675544
No 54
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.96 E-value=3.9e-28 Score=283.51 Aligned_cols=283 Identities=21% Similarity=0.262 Sum_probs=190.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCcc-------cccCCchhhhhhccccccceEEEEee
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGET-------RFTDTRKDEQERCITIKSTAISMYFE 69 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~~-------~~~d~~~~E~~rgiTi~~~~~~~~~~ 69 (755)
...||+|+||+|||||||+++|++.+|.+... ..|++ .++|..++|++||+|++.+...+.|+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 45679999999999999999999999998742 35553 46899999999999999988877774
Q ss_pred eCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEE
Q psy16810 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVL 148 (755)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv 148 (755)
+.+++|||||||.+|..++..++..+|++++|||+.+|+..||++++..+...++| +|+
T Consensus 103 --------------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iiv 162 (632)
T PRK05506 103 --------------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVL 162 (632)
T ss_pred --------------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEE
Confidence 77899999999999999999999999999999999999999999999999999975 577
Q ss_pred EEeccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccc
Q psy16810 149 FMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKD 228 (755)
Q Consensus 149 ~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~ 228 (755)
++||+|+...+ +...+++...+..+...... + ++.++ .++... |..+....
T Consensus 163 vvNK~D~~~~~-~~~~~~i~~~i~~~~~~~~~-------~-----~~~ii-piSA~~-----------g~ni~~~~---- 213 (632)
T PRK05506 163 AVNKMDLVDYD-QEVFDEIVADYRAFAAKLGL-------H-----DVTFI-PISALK-----------GDNVVTRS---- 213 (632)
T ss_pred EEEecccccch-hHHHHHHHHHHHHHHHHcCC-------C-----CccEE-EEeccc-----------CCCccccc----
Confidence 99999985310 00011122222222222110 0 00000 001000 11111000
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCcee
Q psy16810 229 GKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFY 308 (755)
Q Consensus 229 ~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l 308 (755)
. ...|+ .|..|++++.. +|.|. ...++||++.|..++...+... -
T Consensus 214 -----~--~~~wy-~g~tL~~~l~~-~~~~~-------------------------~~~~~p~r~~i~~v~~~~~~~~-g 258 (632)
T PRK05506 214 -----A--RMPWY-EGPSLLEHLET-VEIAS-------------------------DRNLKDFRFPVQYVNRPNLDFR-G 258 (632)
T ss_pred -----c--CCCcc-cHhHHHHHHhc-CCCCC-------------------------CcCCCCceeeEEEEEecCCCce-E
Confidence 0 01344 24678887754 44431 1236799998887765332222 3
Q ss_pred EEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecc-eeecCC
Q psy16810 309 AFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTG-TITTFK 386 (755)
Q Consensus 309 ~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~g-Tl~~~~ 386 (755)
..|+|.+|+|++||+|.+.+.+ .. .+|+.|... ..++++|.|||.|++.--+...+..| .|++.+
T Consensus 259 ~~G~v~~G~l~~gd~v~i~P~~----~~-----~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~ 324 (632)
T PRK05506 259 FAGTVASGVVRPGDEVVVLPSG----KT-----SRVKRIVTP----DGDLDEAFAGQAVTLTLADEIDISRGDMLARAD 324 (632)
T ss_pred EEEEEecceeecCCEEEEcCCC----ce-----EEEEEEEEC----CceeCEEcCCCeEEEEecCccccCCccEEecCC
Confidence 5699999999999999987642 22 256776533 35689999999999853222223344 777654
No 55
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.96 E-value=1.7e-27 Score=274.87 Aligned_cols=257 Identities=22% Similarity=0.235 Sum_probs=181.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+.++|+|+||+|||||||+++|....... +..+|+|.......+.|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~--------------- 290 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY--------------- 290 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe---------------
Confidence 467999999999999999999996533221 2236888877776666641
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
+..++.|+|||||||.+|...+.++++.+|++|+|||+.+|+++||.++|+.+...++|+|+++||+|+... ...
T Consensus 291 -~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~----~~e 365 (742)
T CHL00189 291 -KDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA----NTE 365 (742)
T ss_pred -cCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc----CHH
Confidence 113689999999999999999999999999999999999999999999999999999999999999999652 122
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC-Ch
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP-AG 244 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p-~g 244 (755)
++...+... +.. .+.++....--.. +.... +.
T Consensus 366 ~v~~eL~~~----~ll-------------------------------~e~~g~~vpvv~V------------SAktG~GI 398 (742)
T CHL00189 366 RIKQQLAKY----NLI-------------------------------PEKWGGDTPMIPI------------SASQGTNI 398 (742)
T ss_pred HHHHHHHHh----ccc-------------------------------hHhhCCCceEEEE------------ECCCCCCH
Confidence 222211110 000 0000100000000 00000 11
Q ss_pred HHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeE
Q psy16810 245 EALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324 (755)
Q Consensus 245 ~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v 324 (755)
..|++.++.+...+. ..++++.|+.++|+++..+++.|. ++++||++|+|+.||.|
T Consensus 399 deLle~I~~l~e~~~-----------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~v 454 (742)
T CHL00189 399 DKLLETILLLAEIED-----------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDII 454 (742)
T ss_pred HHHHHhhhhhhhhhc-----------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEE
Confidence 456666654422110 023567899999999999999998 99999999999999999
Q ss_pred EEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceee
Q psy16810 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTIT 383 (755)
Q Consensus 325 ~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~ 383 (755)
++.+ +.++++.+.+....++++|.|||+|+|.||+.....|+++.
T Consensus 455 v~g~--------------~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~ 499 (742)
T CHL00189 455 VIGT--------------SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQ 499 (742)
T ss_pred EECC--------------cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEE
Confidence 8532 24566777777788999999999999999965433355654
No 56
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.95 E-value=5.2e-27 Score=259.62 Aligned_cols=273 Identities=23% Similarity=0.302 Sum_probs=177.9
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
.+.+...||+++||+|||||||+++|. + .++|.+++|++||+|+..+...+.|.... ...+.+...
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~---~----------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~-~~~~~~~~~ 69 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALT---G----------VWTDRHSEELKRGITIRLGYADATIRKCP-DCEEPEAYT 69 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhh---C----------eecccCHhHHhcCcEEEeccccccccccc-ccCcccccc
Confidence 344567999999999999999999992 1 36899999999999999877666653100 000000000
Q ss_pred -c------cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHHcCC-ceEEEEecc
Q psy16810 83 -Q------TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAERI-KPVLFMNKM 153 (755)
Q Consensus 83 -~------~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~i-p~iv~iNKi 153 (755)
. .......+.++|+|||||.+|..++.++++.+|++++|||+.+|. ..||..++..+...++ |+++++||+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 70 TEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 0 000011478999999999999999999999999999999999998 8999999999988887 478899999
Q ss_pred chhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHH
Q psy16810 154 DRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALL 233 (755)
Q Consensus 154 D~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~ 233 (755)
|+.. .++....+..+...+... + .. .+.++. ++... |.
T Consensus 150 Dl~~------~~~~~~~~~~i~~~l~~~---~-~~-----~~~ii~-vSA~~-----------g~--------------- 187 (411)
T PRK04000 150 DLVS------KERALENYEQIKEFVKGT---V-AE-----NAPIIP-VSALH-----------KV--------------- 187 (411)
T ss_pred cccc------chhHHHHHHHHHHHhccc---c-CC-----CCeEEE-EECCC-----------Cc---------------
Confidence 9853 112111122111111000 0 00 000000 00000 00
Q ss_pred HHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccC--------CCC
Q psy16810 234 KVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTS--------DKG 305 (755)
Q Consensus 234 ~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~--------~~G 305 (755)
..+.|++.+...+|.|. .+.++||+++|.++|... +.|
T Consensus 188 ---------gI~~L~~~L~~~l~~~~-------------------------~~~~~~~r~~I~~~f~v~~~g~~~~~~~G 233 (411)
T PRK04000 188 ---------NIDALIEAIEEEIPTPE-------------------------RDLDKPPRMYVARSFDVNKPGTPPEKLKG 233 (411)
T ss_pred ---------CHHHHHHHHHHhCCCCC-------------------------CCCCCCceEEEEeeeeecCCCccccCCcc
Confidence 11567888888787662 123679999999987433 456
Q ss_pred ceeEEEEEEEeEecCCCeEEEccCCC-CCCCccccc--ccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 306 RFYAFGRVFSGKVATGQKARIMGPNY-IPGKKEDLY--EKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 306 ~~l~~~RV~sGtL~~g~~v~i~~~n~-~~~~~e~~~--~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
. ++.|||.+|+|++||.|.+.+.+. ..+....+. ..+|+.|.. ...++++|.|||.+++.
T Consensus 234 ~-Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~----~~~~~~~a~~G~~v~i~ 296 (411)
T PRK04000 234 G-VIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA----GGEKVEEARPGGLVGVG 296 (411)
T ss_pred e-EEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEE----CCEECCEEcCCCEEEEE
Confidence 6 799999999999999999986421 000000000 114566542 24789999999998885
No 57
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.95 E-value=1.3e-26 Score=266.78 Aligned_cols=252 Identities=21% Similarity=0.237 Sum_probs=176.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++||+|||||||+++|.. ..+|..++|++||+||..+...+... +
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg-------------~~~dr~~eE~~rGiTI~l~~~~~~~~-------------------~ 49 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITG-------------VNADRLPEEKKRGMTIDLGYAYWPQP-------------------D 49 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhC-------------CCCccchhcccCCceEEeeeEEEecC-------------------C
Confidence 589999999999999999932 13688899999999998765544332 3
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchhhhcccCCHHHHH
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRALLELQLDAEDLY 168 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~~~~~~~~~~~~~ 168 (755)
+..++|||||||.+|..++.+++..+|++++|||+.+|+.+||++++..+...++|. |+++||+|+...+ ..+...
T Consensus 50 g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~---~~~~v~ 126 (614)
T PRK10512 50 GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA---RIAEVR 126 (614)
T ss_pred CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHH---HHHHHH
Confidence 567999999999999999999999999999999999999999999999999999986 7899999985310 001111
Q ss_pred HHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC-ChHHH
Q psy16810 169 QTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP-AGEAL 247 (755)
Q Consensus 169 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p-~g~~L 247 (755)
..+.. ++...+... ...-. .+.... +...|
T Consensus 127 ~ei~~--------------------------------------~l~~~~~~~--~~ii~---------VSA~tG~gI~~L 157 (614)
T PRK10512 127 RQVKA--------------------------------------VLREYGFAE--AKLFV---------TAATEGRGIDAL 157 (614)
T ss_pred HHHHH--------------------------------------HHHhcCCCC--CcEEE---------EeCCCCCCCHHH
Confidence 11111 111111000 00000 000000 11457
Q ss_pred HHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEc
Q psy16810 248 LQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIM 327 (755)
Q Consensus 248 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~ 327 (755)
++.+..+. .|. .+.++||+++|..+|..++.|. ++.|+|.+|+++.||+|.+.
T Consensus 158 ~~~L~~~~-~~~-------------------------~~~~~~~rl~Id~vf~v~G~Gt-VvtGtv~sG~l~~Gd~v~i~ 210 (614)
T PRK10512 158 REHLLQLP-ERE-------------------------HAAQHRFRLAIDRAFTVKGAGL-VVTGTALSGEVKVGDTLWLT 210 (614)
T ss_pred HHHHHHhh-ccc-------------------------cCcCCCceEEEEEEeccCCCeE-EEEEEEecceEecCCEEEEc
Confidence 77776543 331 1236799999999999999998 89999999999999999987
Q ss_pred cCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--cc-ccceeee-cceeecC
Q psy16810 328 GPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VG-VDQFLVK-TGTITTF 385 (755)
Q Consensus 328 ~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~g-l~~~~~~-~gTl~~~ 385 (755)
+. +.. .+|..+.. ...++++|.|||.+++ .| ++...++ |+.+++.
T Consensus 211 p~----~~~-----~~VrsIq~----~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~ 259 (614)
T PRK10512 211 GV----NKP-----MRVRGLHA----QNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLAD 259 (614)
T ss_pred CC----CCc-----EEEEEEec----CCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCC
Confidence 53 221 14555532 2368999999999987 34 4322233 4466654
No 58
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.95 E-value=3.9e-28 Score=241.54 Aligned_cols=132 Identities=42% Similarity=0.546 Sum_probs=119.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccc--cCcccccCCchhhhhhccccccceEEEE--eeeCccccccccCC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAK--AGETRFTDTRKDEQERCITIKSTAISMY--FELDDKDMVFITNP 81 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~--~~~~~~~~~~~~~~ 81 (755)
+++|||+++||+|||||||+++|++..+.+.... .+..+++|..++|++||+|++++...+. +
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~------------- 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE------------- 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-------------
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-------------
Confidence 4799999999999999999999999999877421 1223468999999999999999988887 5
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.++|||||||.+|..++.++++.+|+||+|||+.+|++.||+++++++..+++|+|+|+||||+..
T Consensus 68 -------~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 68 -------NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE 136 (188)
T ss_dssp -------SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH
T ss_pred -------cccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh
Confidence 489999999999999999999999999999999999999999999999999999999999999999974
No 59
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.95 E-value=5.9e-26 Score=251.53 Aligned_cols=270 Identities=24% Similarity=0.299 Sum_probs=177.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc-c
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ-T 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (755)
+...||+++||+|||||||+++|.. .++|.+++|++||+|++.+...+.|... ..+.+.+.... .
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~-------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTG-------------VWTDTHSEELKRGISIRLGYADAEIYKC-PECDGPECYTTEP 67 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhC-------------eecccCHhHHHcCceeEecccccccccc-cccCccccccccc
Confidence 3567999999999999999999921 2589999999999999988776665311 00100000000 0
Q ss_pred c------cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHHcCCc-eEEEEeccchh
Q psy16810 85 A------KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAERIK-PVLFMNKMDRA 156 (755)
Q Consensus 85 ~------~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~ip-~iv~iNKiD~~ 156 (755)
. ....+..++|||||||.+|..++.++++.+|++++|||+.+|. +.||++++..+...+++ +++++||+|+.
T Consensus 68 ~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 68 VCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 0 0012578999999999999999999999999999999999998 99999999999989875 78899999985
Q ss_pred hhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q psy16810 157 LLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVV 236 (755)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~ 236 (755)
. .+.....+.++.+.+... +... ..++ .++.. .|.
T Consensus 148 ~------~~~~~~~~~~i~~~l~~~---~~~~------~~ii-~vSA~-----------~g~------------------ 182 (406)
T TIGR03680 148 S------KEKALENYEEIKEFVKGT---VAEN------APII-PVSAL-----------HNA------------------ 182 (406)
T ss_pred C------HHHHHHHHHHHHhhhhhc---ccCC------CeEE-EEECC-----------CCC------------------
Confidence 3 122211222221111000 0000 0000 00000 000
Q ss_pred HHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccC--------CCCcee
Q psy16810 237 MRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTS--------DKGRFY 308 (755)
Q Consensus 237 ~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~--------~~G~~l 308 (755)
....|++.+..++|.|. .+.+.||+++|..+|... ++|. +
T Consensus 183 ------gi~~L~e~L~~~l~~~~-------------------------~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~-V 230 (406)
T TIGR03680 183 ------NIDALLEAIEKFIPTPE-------------------------RDLDKPPLMYVARSFDVNKPGTPPEKLKGG-V 230 (406)
T ss_pred ------ChHHHHHHHHHhCCCCC-------------------------CCCCCCcEEEEEEEEeecCCCccccCCcee-E
Confidence 11568888888888662 124679999999988543 3566 7
Q ss_pred EEEEEEEeEecCCCeEEEccCCCC-CCCccccc--ccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 309 AFGRVFSGKVATGQKARIMGPNYI-PGKKEDLY--EKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 309 ~~~RV~sGtL~~g~~v~i~~~n~~-~~~~e~~~--~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
+.|||.+|+|++||.|.+.+.+.. .+....+. ..+|..|.. ...++++|.|||.+++.
T Consensus 231 v~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~----~~~~~~~a~~G~~v~i~ 291 (406)
T TIGR03680 231 IGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA----GGYKVEEARPGGLVGVG 291 (406)
T ss_pred EEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEE----CCEECCEEcCCCEEEEe
Confidence 899999999999999999864210 00000000 014555543 34789999999999973
No 60
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.94 E-value=5.7e-27 Score=233.19 Aligned_cols=129 Identities=31% Similarity=0.398 Sum_probs=112.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..||+++||+|||||||+++|++.+....+.+......+|+.++|++||+|++++...+.|+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~------------------ 63 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA------------------ 63 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC------------------
Confidence 47999999999999999999998754322212122346899999999999999987776653
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~ 156 (755)
+++++|||||||.+|..++.++++.+|+|++|||+.+|+..||+++|+.+.+.++| +|+|+||||+.
T Consensus 64 --~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 64 --NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred --CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999998 57899999985
No 61
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.9e-26 Score=233.42 Aligned_cols=311 Identities=23% Similarity=0.289 Sum_probs=204.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-------ccccCCchhhhhhccccccceEEEEe
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-------TRFTDTRKDEQERCITIKSTAISMYF 68 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-------~~~~d~~~~E~~rgiTi~~~~~~~~~ 68 (755)
+..-++..+|++|.|||||+++|||.+..+-.. +.|+ .-..|-.+.||+.||||+.+...|.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456788999999999999999999998866421 1121 11468889999999999987665543
Q ss_pred eeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-E
Q psy16810 69 ELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-V 147 (755)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-i 147 (755)
...++.+.|||||..|.++|..+.+-||.||++|||..|+..||++|--.+..+|++. +
T Consensus 84 --------------------~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvv 143 (431)
T COG2895 84 --------------------EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVV 143 (431)
T ss_pred --------------------ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEE
Confidence 4788999999999999999999999999999999999999999999999999999976 6
Q ss_pred EEEeccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCcccccc
Q psy16810 148 LFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEK 227 (755)
Q Consensus 148 v~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~ 227 (755)
+.+||||+.+ ++.+ .|..|...........+- .......++.-.|.++-.
T Consensus 144 vAVNKmDLvd----y~e~----~F~~I~~dy~~fa~~L~~-----------------~~~~~IPiSAl~GDNV~~----- 193 (431)
T COG2895 144 VAVNKMDLVD----YSEE----VFEAIVADYLAFAAQLGL-----------------KDVRFIPISALLGDNVVS----- 193 (431)
T ss_pred EEEeeecccc----cCHH----HHHHHHHHHHHHHHHcCC-----------------CcceEEechhccCCcccc-----
Confidence 6899999975 3322 333333322110000000 000001122211222110
Q ss_pred chHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccC--CCC
Q psy16810 228 DGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTS--DKG 305 (755)
Q Consensus 228 ~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~--~~G 305 (755)
+.-...|+- |..||+.+-..-.. .....+||+..|..+.... ++|
T Consensus 194 ------~s~~mpWY~-GptLLe~LE~v~i~--------------------------~~~~~~~~RfPVQ~V~Rp~~dfRG 240 (431)
T COG2895 194 ------KSENMPWYK-GPTLLEILETVEIA--------------------------DDRSAKAFRFPVQYVNRPNLDFRG 240 (431)
T ss_pred ------cccCCCccc-CccHHHHHhhcccc--------------------------ccccccceeeceEEecCCCCcccc
Confidence 000123553 35666655211110 1123567888888875432 333
Q ss_pred ceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecc-eeec
Q psy16810 306 RFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTG-TITT 384 (755)
Q Consensus 306 ~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~g-Tl~~ 384 (755)
--|+|-||++++||.|.++++ |+.. +|+++..+.| ++++|.||+-|.+.=-+++.+..| .|+.
T Consensus 241 ---yaGtiasG~v~~Gd~vvvlPs----G~~s-----~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~~ 304 (431)
T COG2895 241 ---YAGTIASGSVKVGDEVVVLPS----GKTS-----RVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIVA 304 (431)
T ss_pred ---cceeeeccceecCCeEEEccC----CCee-----eEEEEeccCC----chhhccCCceEEEEEcceeecccCcEEEc
Confidence 358999999999999999876 4332 6888887765 478999999998864444444444 6666
Q ss_pred CCCccccccccccCCceEEEEEeeCCCCChhhH
Q psy16810 385 FKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKL 417 (755)
Q Consensus 385 ~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL 417 (755)
.... +...-.|. .-++++.=+|..++..-+|
T Consensus 305 ~~~~-~~~~~~f~-A~vvWm~~~pl~pGr~Y~l 335 (431)
T COG2895 305 ADAP-PAVADAFD-ADVVWMDEEPLLPGRSYDL 335 (431)
T ss_pred cCCC-cchhhhcc-eeEEEecCCCCCCCceEEE
Confidence 5443 22333443 5678887778776654433
No 62
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.7e-26 Score=239.20 Aligned_cols=235 Identities=26% Similarity=0.328 Sum_probs=173.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+..||+|||||||+.++. ...+|..++|++||+||+.+...+.. .
T Consensus 2 ii~t~GhidHgkT~L~~alt-------------g~~~d~l~EekKRG~TiDlg~~y~~~--------------------~ 48 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT-------------GGVTDRLPEEKKRGITIDLGFYYRKL--------------------E 48 (447)
T ss_pred eEEEeeeeeccchhhhhhhc-------------ccccccchhhhhcCceEeeeeEeccC--------------------C
Confidence 68999999999999999982 23578999999999999977655444 3
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchhhhcccCCHHHHH
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRALLELQLDAEDLY 168 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~~~~~~~~~~~~~ 168 (755)
++.+.|||+|||+||...+..++...|+|++|||+.+|+++||.+|+..+..+|++. ++|+||+|+.. .+.+.
T Consensus 49 d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d------~~r~e 122 (447)
T COG3276 49 DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVD------EARIE 122 (447)
T ss_pred CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccccc------HHHHH
Confidence 669999999999999999999999999999999999999999999999999999988 99999999964 33444
Q ss_pred HHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChHHHH
Q psy16810 169 QTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEALL 248 (755)
Q Consensus 169 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~~LL 248 (755)
..+.+++.... |.. ..+...+...|.. ...|-
T Consensus 123 ~~i~~Il~~l~-----l~~-------------------~~i~~~s~~~g~G------------------------I~~Lk 154 (447)
T COG3276 123 QKIKQILADLS-----LAN-------------------AKIFKTSAKTGRG------------------------IEELK 154 (447)
T ss_pred HHHHHHHhhcc-----ccc-------------------ccccccccccCCC------------------------HHHHH
Confidence 44444444332 000 0000111111110 12222
Q ss_pred HHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEcc
Q psy16810 249 QMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMG 328 (755)
Q Consensus 249 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~ 328 (755)
+.+.+.+- +. ..+.++||+.+|...|...+.|. ++.|.++||+++.||.+++.+
T Consensus 155 ~~l~~L~~-~~------------------------e~d~~~~fri~IDraFtVKGvGT-VVtGtv~sG~V~v~D~L~l~p 208 (447)
T COG3276 155 NELIDLLE-EI------------------------ERDEQKPFRIAIDRAFTVKGVGT-VVTGTVLSGEVKVGDKLYLSP 208 (447)
T ss_pred HHHHHhhh-hh------------------------hhccCCceEEEEeeEEEeccccE-EEEeEEeeeeEEECCEEEEec
Confidence 22222111 10 13568999999999999999999 899999999999999999875
Q ss_pred CCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 329 PNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 329 ~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
- ++.- +|.+|. ..-+++++|.||+.|++.
T Consensus 209 ~----~k~v-----~VRsIq----~~d~d~~~a~AG~RVgLa 237 (447)
T COG3276 209 I----NKEV-----RVRSIQ----AHDVDVEEAKAGQRVGLA 237 (447)
T ss_pred C----CCeE-----EEEeee----ecCcchhhccccceeeee
Confidence 3 3322 444442 223689999999999884
No 63
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=228.17 Aligned_cols=303 Identities=21% Similarity=0.288 Sum_probs=208.6
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
+.....+|+..||+|||||||+.+| .+|..++...++..++|..++|.+||.|-..+..-+-|.. ++.....|..+.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~d-gk~~rlknPld~ 189 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDD-GKVVRLKNPLDE 189 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEE--EecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecC-CceEeecCcccH
Confidence 3456789999999999999999999 5677776555566789999999999999888877777764 333332221111
Q ss_pred c----ccCCCCeEEEEEcCCCCcccHHHHHHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 84 T----AKNEKGFLINLIDSPGHVDFSSEVTAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~----~~~~~~~~i~lIDtPGh~df~~~~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
. ..+..+..+.|+||-||.-|.+.++++| ...|+.+|||.|.+|++..|++|+..+..+++|+|++++|+|...
T Consensus 190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc
Confidence 1 1133467899999999999999999999 577999999999999999999999999999999999999999854
Q ss_pred hcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q psy16810 158 LELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM 237 (755)
Q Consensus 158 ~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~ 237 (755)
.+ ......+.+..++..++.++... ...++.......-+.+..+ .+.+.
T Consensus 270 dd---r~~~v~~ei~~~Lk~v~Rip~~v----------------k~~~d~v~aa~a~k~~~~v------------vPi~~ 318 (527)
T COG5258 270 DD---RFQGVVEEISALLKRVGRIPLIV----------------KDTDDVVLAAKAMKAGRGV------------VPIFY 318 (527)
T ss_pred HH---HHHHHHHHHHHHHHHhcccceee----------------eccchhHHhhhhhhcCCce------------EEEEE
Confidence 11 11222233333333343332211 1111111111111111100 00000
Q ss_pred -HhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEe
Q psy16810 238 -RTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSG 316 (755)
Q Consensus 238 -~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sG 316 (755)
++....|-.||+.+...||.-. ..+.++||.+||.|+|+..++|. ++.+-|-||
T Consensus 319 tSsVTg~GldlL~e~f~~Lp~rr------------------------~~~d~g~flmYId~iYsVtGVGt-VvsGsV~~G 373 (527)
T COG5258 319 TSSVTGEGLDLLDEFFLLLPKRR------------------------RWDDEGPFLMYIDKIYSVTGVGT-VVSGSVKSG 373 (527)
T ss_pred EecccCccHHHHHHHHHhCCccc------------------------ccCCCCCeEEEEEeeEEEeeeEE-EEeeeEEee
Confidence 1111235678888888887531 13567899999999999999998 899999999
Q ss_pred EecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccccc
Q psy16810 317 KVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGVDQ 374 (755)
Q Consensus 317 tL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~ 374 (755)
.|+.||+|++.+ +. .| ++.+.+|++|- ..+..|++|.||+|+.+ .|.+.
T Consensus 374 ~l~~gd~vllGP-~~-~G---~fr~v~vkSIe----mh~~rvdsa~aG~iig~Al~gv~~ 424 (527)
T COG5258 374 ILHVGDTVLLGP-FK-DG---KFREVVVKSIE----MHHYRVDSAKAGSIIGIALKGVEK 424 (527)
T ss_pred eeccCCEEEEcc-CC-CC---cEEEEEEEEEE----EeeEEeccccCCcEEEEEecccCH
Confidence 999999999753 22 22 23444566653 23478999999999765 46543
No 64
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.93 E-value=3.2e-25 Score=254.65 Aligned_cols=250 Identities=25% Similarity=0.306 Sum_probs=173.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
||+++||+|||||||+++|... .+|..++|++||+|+......+.++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~-------------~~d~~~eE~~rGiTid~~~~~~~~~-------------------- 48 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGI-------------AADRLPEEKKRGMTIDLGFAYFPLP-------------------- 48 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCc-------------cCcCChhHhcCCceEEeEEEEEEeC--------------------
Confidence 8999999999999999999421 2577889999999998877666663
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchhhhcccCCHHHHH
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRALLELQLDAEDLY 168 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~~~~~~~~~~~~~ 168 (755)
++.++|||||||.+|..++..++..+|++++|||+++|+++||.+++..+...++| +|+++||+|+...+ ..+...
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~---~~~~~~ 125 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE---EIKRTE 125 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH---HHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999 99999999985311 001112
Q ss_pred HHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChHHHH
Q psy16810 169 QTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEALL 248 (755)
Q Consensus 169 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~~LL 248 (755)
..+..++..... ... ..++ .++... |..+ ..|.
T Consensus 126 ~ei~~~l~~~~~-----~~~------~~ii-~vSA~t-----------G~GI------------------------~eL~ 158 (581)
T TIGR00475 126 MFMKQILNSYIF-----LKN------AKIF-KTSAKT-----------GQGI------------------------GELK 158 (581)
T ss_pred HHHHHHHHHhCC-----CCC------CcEE-EEeCCC-----------CCCc------------------------hhHH
Confidence 222222221100 000 0000 000000 0000 1222
Q ss_pred HHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEcc
Q psy16810 249 QMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMG 328 (755)
Q Consensus 249 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~ 328 (755)
+.+...++... ....++||+++|..+|..++.|. ++.|+|.+|+++.||+|.+.+
T Consensus 159 ~~L~~l~~~~~------------------------~~~~~~p~r~~Id~~f~v~G~Gt-Vv~G~v~~G~i~~Gd~l~i~P 213 (581)
T TIGR00475 159 KELKNLLESLD------------------------IKRIQKPLRMAIDRAFKVKGAGT-VVTGTAFSGEVKVGDNLRLLP 213 (581)
T ss_pred HHHHHHHHhCC------------------------CcCcCCCcEEEEEEEEecCCcEE-EEEEEEecceEecCCEEEECC
Confidence 22222211100 00136799999999999999998 899999999999999999876
Q ss_pred CCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cccceeeecc
Q psy16810 329 PNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GVDQFLVKTG 380 (755)
Q Consensus 329 ~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~~g 380 (755)
.+ .. .+|..|.. + ..++++|.|||.|++. |++...+..|
T Consensus 214 ~~----~~-----~~Vr~iq~-~---~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 214 IN----HE-----VRVKAIQA-Q---NQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred CC----ce-----EEEeEEEE-C---CccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 42 22 25666653 3 3679999999999883 5554334555
No 65
>KOG1145|consensus
Probab=99.92 E-value=2.2e-24 Score=230.33 Aligned_cols=252 Identities=23% Similarity=0.319 Sum_probs=176.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+.+.|.|+||+|||||||+++|-.. .+...+. .|||...++++..++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks--~VAA~E~--------------GGITQhIGAF~V~~p---------------- 198 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKS--SVAAGEA--------------GGITQHIGAFTVTLP---------------- 198 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhC--ceehhhc--------------CCccceeceEEEecC----------------
Confidence 35689999999999999999999322 2222222 379998888887775
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
++..|+|+|||||.-|.....++..++|.+||||.|.+|+.+||.+.+..|+..++|+|+.|||+|++++ +++
T Consensus 199 ---~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a----~pe 271 (683)
T KOG1145|consen 199 ---SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA----NPE 271 (683)
T ss_pred ---CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC----CHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999873 445
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChH
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGE 245 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~ 245 (755)
..++.+- .. ......| -|+++++. ++....+.+..
T Consensus 272 kv~~eL~---~~-gi~~E~~------GGdVQvip-iSAl~g~nl~~---------------------------------- 306 (683)
T KOG1145|consen 272 KVKRELL---SQ-GIVVEDL------GGDVQVIP-ISALTGENLDL---------------------------------- 306 (683)
T ss_pred HHHHHHH---Hc-CccHHHc------CCceeEEE-eecccCCChHH----------------------------------
Confidence 4443332 11 0000001 01111110 01000111111
Q ss_pred HHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEE
Q psy16810 246 ALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKAR 325 (755)
Q Consensus 246 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~ 325 (755)
|.+++.-.. + ..-.+.+|++|+-++|.....++++|. ++.+-|-.|||++|+.|.
T Consensus 307 -L~eaill~A----e-------------------~mdLkA~p~g~~eg~VIES~vdkg~G~-~aT~iVkrGTLkKG~vlV 361 (683)
T KOG1145|consen 307 -LEEAILLLA----E-------------------VMDLKADPKGPAEGWVIESSVDKGRGP-VATVIVKRGTLKKGSVLV 361 (683)
T ss_pred -HHHHHHHHH----H-------------------HhhcccCCCCCceEEEEEeeecCCccc-eeEEEEeccccccccEEE
Confidence 222221000 0 000134678999999999999999998 899999999999999886
Q ss_pred EccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecc
Q psy16810 326 IMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTG 380 (755)
Q Consensus 326 i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~g 380 (755)
. | +.. -++..++ ...-.++++|.||.-+-|.|+++.-+-|+
T Consensus 362 ~-G------~~w----~KVr~l~---D~nGk~i~~A~Ps~pv~V~GwkdlP~aGD 402 (683)
T KOG1145|consen 362 A-G------KSW----CKVRALF---DHNGKPIDEATPSQPVEVLGWKDLPIAGD 402 (683)
T ss_pred E-e------chh----hhhhhhh---hcCCCCccccCCCCceEeecccCCCCCCc
Confidence 3 2 221 1344444 33447899999999999999988654444
No 66
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.92 E-value=2.6e-24 Score=218.37 Aligned_cols=159 Identities=45% Similarity=0.720 Sum_probs=138.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccc---cccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAG---AKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
|||+|+||+|+|||||+++|++.++.+.. ...+.++++|..++|++||+|+.+....+.|..
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~--------------- 65 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD--------------- 65 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc---------------
Confidence 89999999999999999999999998763 344556789999999999999999999988851
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
.++..+.+++||||||.+|...+..+++.+|++|+|+|+.++...+++.+++.+...++|.++++||+|+...+..++..
T Consensus 66 ~~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~ 145 (213)
T cd04167 66 SKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPN 145 (213)
T ss_pred CCCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHH
Confidence 11246899999999999999999999999999999999999999999999998888899999999999998666667777
Q ss_pred HHHHHHHHHhhhceeeE
Q psy16810 166 DLYQTFQRIVENVNVII 182 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~ 182 (755)
+.+..+.++++.+|..+
T Consensus 146 ~~~~~l~~~i~~~n~~~ 162 (213)
T cd04167 146 DAYFKLRHIIDEVNNII 162 (213)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877554
No 67
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.8e-23 Score=225.23 Aligned_cols=256 Identities=24% Similarity=0.309 Sum_probs=175.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+.+.|+++||+|||||||++.+-. ..+...++ -|||..-.+..+.++.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~--t~Va~~Ea--------------GGITQhIGA~~v~~~~---------------- 51 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRK--TNVAAGEA--------------GGITQHIGAYQVPLDV---------------- 51 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhc--CccccccC--------------CceeeEeeeEEEEecc----------------
Confidence 557899999999999999999922 22222233 4788888888777630
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAED 166 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~ 166 (755)
.+...|+|||||||.-|+....++..++|.|+||||+.+|+++||.+.+..++..++|+++++||||+..+ .+..
T Consensus 52 -~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~----np~~ 126 (509)
T COG0532 52 -IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA----NPDK 126 (509)
T ss_pred -CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC----CHHH
Confidence 02468999999999999999999999999999999999999999999999999999999999999999853 2333
Q ss_pred HHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChHH
Q psy16810 167 LYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEA 246 (755)
Q Consensus 167 ~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~~ 246 (755)
....+.+. ......|+.+ + .+-.++....+.+ ..
T Consensus 127 v~~el~~~----gl~~E~~gg~------v-~~VpvSA~tg~Gi-----------------------------------~e 160 (509)
T COG0532 127 VKQELQEY----GLVPEEWGGD------V-IFVPVSAKTGEGI-----------------------------------DE 160 (509)
T ss_pred HHHHHHHc----CCCHhhcCCc------e-EEEEeeccCCCCH-----------------------------------HH
Confidence 22222211 1111111110 0 0000111111111 34
Q ss_pred HHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEE
Q psy16810 247 LLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARI 326 (755)
Q Consensus 247 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i 326 (755)
||+++.-. ++..+ .+.+++.|..+.|.-+.-+++.|. ++.+-|+.|||+.||.|..
T Consensus 161 LL~~ill~------aev~e-----------------lka~~~~~a~gtviE~~~dkG~G~-vatviv~~GtL~~GD~iv~ 216 (509)
T COG0532 161 LLELILLL------AEVLE-----------------LKANPEGPARGTVIEVKLDKGLGP-VATVIVQDGTLKKGDIIVA 216 (509)
T ss_pred HHHHHHHH------HHHHh-----------------hhcCCCCcceEEEEEEEeccCCCc-eEEEEEecCeEecCCEEEE
Confidence 45544310 00000 124678899999999999999998 8999999999999999986
Q ss_pred ccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceee
Q psy16810 327 MGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTIT 383 (755)
Q Consensus 327 ~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~ 383 (755)
.+. -+++..+.-....+++.+.++--+-+.|++....-+|...
T Consensus 217 g~~--------------~g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~ 259 (509)
T COG0532 217 GGE--------------YGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFI 259 (509)
T ss_pred ccC--------------CCceEEeehhcCCCccccCCCCCeEEeccccccccCceEE
Confidence 432 1233444445557788888887788888887555455443
No 68
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.91 E-value=3.3e-24 Score=218.32 Aligned_cols=128 Identities=32% Similarity=0.389 Sum_probs=114.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccc----------cCcc-----cccCCchhhhhhccccccceEEEEeeeCccc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAK----------AGET-----RFTDTRKDEQERCITIKSTAISMYFELDDKD 74 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-----~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 74 (755)
||+++||+|||||||+++|++.+|.+++.. .|+. .++|+.++|++||+|++++...+.|.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 899999999999999999999999987532 2432 37999999999999999999998885
Q ss_pred cccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCC-------cceehHHHHHHHHHHcCC-ce
Q psy16810 75 MVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS-------GVCVQTETVLRQAIAERI-KP 146 (755)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~-------g~~~qt~~~~~~~~~~~i-p~ 146 (755)
++.++|||||||.+|..++..+++.+|++|+|||+++ ++..|+.+++..+...++ |+
T Consensus 76 ---------------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 140 (219)
T cd01883 76 ---------------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQL 140 (219)
T ss_pred ---------------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeE
Confidence 7899999999999999999999999999999999998 577899999998888885 67
Q ss_pred EEEEeccchhh
Q psy16810 147 VLFMNKMDRAL 157 (755)
Q Consensus 147 iv~iNKiD~~~ 157 (755)
++|+||||+..
T Consensus 141 iivvNK~Dl~~ 151 (219)
T cd01883 141 IVAVNKMDDVT 151 (219)
T ss_pred EEEEEcccccc
Confidence 78999999973
No 69
>KOG0461|consensus
Probab=99.91 E-value=3.1e-23 Score=209.60 Aligned_cols=261 Identities=20% Similarity=0.297 Sum_probs=175.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
--|++++||+|||||||+.+|.. .|++...|.++...+||||.+.+.-.+..... .....
T Consensus 7 n~N~GiLGHvDSGKTtLarals~---------~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~p-----------arLpq 66 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSE---------LGSTAAFDKHPQSTERGITLDLGFSTMTVLSP-----------ARLPQ 66 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHh---------hccchhhccCCcccccceeEeecceeeecccc-----------cccCc
Confidence 37999999999999999999943 34566789999999999999877554443210 11122
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHHH
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDL 167 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~~ 167 (755)
+..-+++|||||||...++.++.+....|.+++|||+..|.+.||.+++-....+-.+.++++||+|... ..+-
T Consensus 67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lp------E~qr 140 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLP------ENQR 140 (522)
T ss_pred cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEecccccc------chhh
Confidence 3457899999999999999999999999999999999999999999999999999999999999999842 2222
Q ss_pred HHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChHHH
Q psy16810 168 YQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEAL 247 (755)
Q Consensus 168 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~~L 247 (755)
..++......+...+. ..+..++..+.+ ++..+.-.-++. .+.|
T Consensus 141 ~ski~k~~kk~~KtLe----~t~f~g~~PI~~-vsa~~G~~~~~~-------------------------------i~eL 184 (522)
T KOG0461|consen 141 ASKIEKSAKKVRKTLE----STGFDGNSPIVE-VSAADGYFKEEM-------------------------------IQEL 184 (522)
T ss_pred hhHHHHHHHHHHHHHH----hcCcCCCCceeE-EecCCCccchhH-------------------------------HHHH
Confidence 2222222111110000 000000000000 010110000000 1233
Q ss_pred HHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEc
Q psy16810 248 LQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIM 327 (755)
Q Consensus 248 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~ 327 (755)
.+++...+-.| +.|+++||.++|...+...+.|. +..|.|.+|.++.|+.|.+.
T Consensus 185 ~e~l~s~if~P-------------------------~Rd~~gpflm~vDHCF~IKGQGT-V~TGTvl~G~~~ln~~iE~P 238 (522)
T KOG0461|consen 185 KEALESRIFEP-------------------------KRDEEGPFLMAVDHCFAIKGQGT-VLTGTVLRGVLRLNTEIEFP 238 (522)
T ss_pred HHHHHHhhcCC-------------------------CcCCCCCeEEEeeeeEEeccCce-EEeeeEEEeEEecCcEEeec
Confidence 44443222223 25788999999999999999998 89999999999999999864
Q ss_pred cCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe
Q psy16810 328 GPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369 (755)
Q Consensus 328 ~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai 369 (755)
.-| .+ ++++.+ ...+.+|.+|.+||..++
T Consensus 239 AL~----e~-----rkVKsl----qmf~~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 239 ALN----EK-----RKVKSL----QMFKQRVTSAAAGDRAGF 267 (522)
T ss_pred ccc----hh-----hhhhhH----HHHhhhhhhhhcccceee
Confidence 321 11 134443 234467999999999765
No 70
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.90 E-value=5.2e-24 Score=179.61 Aligned_cols=80 Identities=59% Similarity=1.085 Sum_probs=76.4
Q ss_pred ecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecC
Q psy16810 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718 (755)
Q Consensus 639 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~ 718 (755)
||||+|||+||++++|+|+++|++|||+|++++..+++..+.|+|++|++|+|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998877776558999999999999999999999999999999999999986
No 71
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.89 E-value=1.7e-23 Score=211.48 Aligned_cols=128 Identities=26% Similarity=0.257 Sum_probs=113.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCcccccc---------------CcccccCCchhhhhhccccccceEEEEeeeCccc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKA---------------GETRFTDTRKDEQERCITIKSTAISMYFELDDKD 74 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~---------------g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 74 (755)
||+|+||+|||||||+++|++.+|.+..... ....++|+.++|++||+|+++....+.|+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 6999999999999999999999999873211 11357999999999999999998888774
Q ss_pred cccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEecc
Q psy16810 75 MVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKM 153 (755)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKi 153 (755)
+..++|+|||||.+|..++..+++.+|++|+|+|+++|+..|++.++..+...++| +|+|+||+
T Consensus 76 ---------------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~ 140 (208)
T cd04166 76 ---------------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKM 140 (208)
T ss_pred ---------------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEch
Confidence 77999999999999999999999999999999999999999999999999888876 56689999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 141 D~~~ 144 (208)
T cd04166 141 DLVD 144 (208)
T ss_pred hccc
Confidence 9863
No 72
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.88 E-value=1e-21 Score=225.11 Aligned_cols=133 Identities=28% Similarity=0.265 Sum_probs=89.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+...|+|+||+|||||||+++|...... ...+| |+|...++..+.+........... ....
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g--------------~itq~ig~~~~~~~~~~~~~~~~~--~~~~ 65 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAG--------------GITQHIGATEVPIDVIEKIAGPLK--KPLP 65 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCC--------------ceEEeeceeeccccccccccceec--cccc
Confidence 35568999999999999999999543211 11222 222222211111110000000000 0000
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
....-..++|+|||||.+|...+.++++.+|++++|+|+.+|++.||.+++..+...++|+++++||+|+.
T Consensus 66 ~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 66 IKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred cccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 00000127999999999999999999999999999999999999999999999999999999999999985
No 73
>KOG0459|consensus
Probab=99.88 E-value=1.3e-22 Score=209.79 Aligned_cols=283 Identities=22% Similarity=0.319 Sum_probs=193.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-----ccccCCchhhhhhccccccceEEEEee
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-----TRFTDTRKDEQERCITIKSTAISMYFE 69 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 69 (755)
++...|+.++||+|+||||+-+.+++.+|.++.+ +.++ ++++|+..+|+++|-|+..+...|.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4668899999999999999999999999988853 1222 346999999999999999998887653
Q ss_pred eCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-------eehHHHHHHHHHHc
Q psy16810 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-------CVQTETVLRQAIAE 142 (755)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~ 142 (755)
..+++++|+|||.-|..+|+.++..+|.+++|++|..|- ..||+++..+++..
T Consensus 156 --------------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~ 215 (501)
T KOG0459|consen 156 --------------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA 215 (501)
T ss_pred --------------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh
Confidence 678999999999999999999999999999999998664 35999999999999
Q ss_pred CCce-EEEEeccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCC
Q psy16810 143 RIKP-VLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELK 221 (755)
Q Consensus 143 ~ip~-iv~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~ 221 (755)
++.. |++|||||-+..++.. + ++.++.+. +..+|..+|....
T Consensus 216 gv~~lVv~vNKMddPtvnWs~--e----Ry~E~~~k-------------------------------~~~fLr~~g~n~~ 258 (501)
T KOG0459|consen 216 GVKHLIVLINKMDDPTVNWSN--E----RYEECKEK-------------------------------LQPFLRKLGFNPK 258 (501)
T ss_pred ccceEEEEEEeccCCccCcch--h----hHHHHHHH-------------------------------HHHHHHHhcccCC
Confidence 9965 7899999987644321 1 12222111 1122222221111
Q ss_pred ccccc-----cchHHHHHHH--HHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEE
Q psy16810 222 PEDKE-----KDGKALLKVV--MRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMY 294 (755)
Q Consensus 222 ~~~~~-----~~~~~l~~~~--~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 294 (755)
.+-.. ..+..+.... ...|+- |..+|..+-+ +|++ +.+.++|+++.
T Consensus 259 ~d~~f~p~sg~tG~~~k~~~~s~cpwy~-gp~fl~~ld~-l~~~-------------------------~R~~~GP~~~p 311 (501)
T KOG0459|consen 259 PDKHFVPVSGLTGANVKDRTDSVCPWYK-GPIFLEYLDE-LPHL-------------------------ERILNGPIRCP 311 (501)
T ss_pred CCceeeecccccccchhhcccccCCccc-CCccceehhc-cCcc-------------------------cccCCCCEEee
Confidence 00000 0000000000 012221 1223333322 4433 23568999999
Q ss_pred EEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--ccc
Q psy16810 295 VSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VGV 372 (755)
Q Consensus 295 V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~gl 372 (755)
|..-+.+ .|. +.+|+|-||+++.||.+.+++.+. .- .|..|| ++-.+++++.+||.+-+ .|+
T Consensus 312 I~~Kykd--mGT-vv~GKvEsGsi~kg~~lvvMPnk~---~v------eV~~I~----~ddvE~~~~~pGenvk~rlkgi 375 (501)
T KOG0459|consen 312 VANKYKD--MGT-VVGGKVESGSIKKGQQLVVMPNKT---NV------EVLGIY----SDDVETDRVAPGENVKLRLKGI 375 (501)
T ss_pred hhhhccc--cce-EEEEEecccceecCCeEEEccCCc---ce------EEEEEe----cccceeeeccCCcceEEEeccc
Confidence 9887765 577 899999999999999999987421 11 344444 22478999999999766 477
Q ss_pred cceeeecc-eeecCCC
Q psy16810 373 DQFLVKTG-TITTFKD 387 (755)
Q Consensus 373 ~~~~~~~g-Tl~~~~~ 387 (755)
+.-.+..| .||++.+
T Consensus 376 eeedi~~GfiL~~~~n 391 (501)
T KOG0459|consen 376 EEEDISPGFILCSPNN 391 (501)
T ss_pred chhhccCceEEecCCC
Confidence 76556667 6666543
No 74
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=1.7e-21 Score=194.76 Aligned_cols=131 Identities=40% Similarity=0.670 Sum_probs=115.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
++|||+++|++|+|||||+++|++.++.+.....-..+.+|+.+.|..+|+|+......+.|+
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------------- 63 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK----------------- 63 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC-----------------
Confidence 489999999999999999999998777665432112356888999999999999888877774
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++.++|+|||||.+|...+..+++.+|++++|+|++++...+++.+++.+...++|+++++||+|+..
T Consensus 64 ---~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 64 ---DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 78999999999999999999999999999999999999989998888888888999999999999864
No 75
>KOG0466|consensus
Probab=99.86 E-value=3.7e-22 Score=198.78 Aligned_cols=285 Identities=21% Similarity=0.270 Sum_probs=190.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEE-EeeeCccccccccCC---
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISM-YFELDDKDMVFITNP--- 81 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~-~~~~~~~~~~~~~~~--- 81 (755)
+...||+.+||+.|||||++.++ +|. -+-.++.|-+|.|||+...... .|+++++.|....+.
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAi---SGv----------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAI---SGV----------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeeeecceeccccCcceeeeee---ccc----------eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 34789999999999999999987 221 2334677999999999885443 477666555432221
Q ss_pred -----Cccc-----cCC---CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHHcCCce-
Q psy16810 82 -----DQTA-----KNE---KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAERIKP- 146 (755)
Q Consensus 82 -----~~~~-----~~~---~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~ip~- 146 (755)
+... ..+ --.++.|+|||||.-++..|..+..++|+|+++|.+++.. ++||.+|+....-++++.
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 0000 000 1256889999999999999999999999999999999864 899999999999999865
Q ss_pred EEEEeccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccc
Q psy16810 147 VLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKE 226 (755)
Q Consensus 147 iv~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~ 226 (755)
+++.||+|+. ..+++.++++++...+... +++. .-+...+++++.++
T Consensus 183 iilQNKiDli------~e~~A~eq~e~I~kFi~~t-------------------~ae~--aPiiPisAQlkyNI------ 229 (466)
T KOG0466|consen 183 IILQNKIDLI------KESQALEQHEQIQKFIQGT-------------------VAEG--APIIPISAQLKYNI------ 229 (466)
T ss_pred EEEechhhhh------hHHHHHHHHHHHHHHHhcc-------------------ccCC--CceeeehhhhccCh------
Confidence 6789999994 4566666776666554211 1110 11223333333322
Q ss_pred cchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeecc-----
Q psy16810 227 KDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPT----- 301 (755)
Q Consensus 227 ~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~----- 301 (755)
+.+.+.|++++|-|. .|...|..+.|.+.|..
T Consensus 230 ------------------d~v~eyivkkIPvPv-------------------------Rdf~s~prlIVIRSFDVNkPG~ 266 (466)
T KOG0466|consen 230 ------------------DVVCEYIVKKIPVPV-------------------------RDFTSPPRLIVIRSFDVNKPGS 266 (466)
T ss_pred ------------------HHHHHHHHhcCCCCc-------------------------cccCCCCcEEEEEeeccCCCCc
Confidence 578999999999884 23345666667666543
Q ss_pred ---CCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec-cccceee
Q psy16810 302 ---SDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV-GVDQFLV 377 (755)
Q Consensus 302 ---~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~-gl~~~~~ 377 (755)
.-.|. ++-+-+..|.|+.||.+.+-+.-++.+...++.++.|-.-..+.-.++.+.+.|.+|-.+++. .++..+.
T Consensus 267 ev~~lkGg-vaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlc 345 (466)
T KOG0466|consen 267 EVDDLKGG-VAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLC 345 (466)
T ss_pred hhhcccCc-cccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchh
Confidence 23466 789999999999999999866444444333443332211112222466788899999887763 4444333
Q ss_pred ecc
Q psy16810 378 KTG 380 (755)
Q Consensus 378 ~~g 380 (755)
+.|
T Consensus 346 raD 348 (466)
T KOG0466|consen 346 RAD 348 (466)
T ss_pred hhh
Confidence 333
No 76
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.85 E-value=8.6e-22 Score=168.77 Aligned_cols=83 Identities=39% Similarity=0.625 Sum_probs=77.9
Q ss_pred eeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceee
Q psy16810 637 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQV 716 (755)
Q Consensus 637 LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~ 716 (755)
||||||+++|.||++++|+|+++|++|||.|.+++..++ .+.|+|.+|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~--~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGG--AQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCC--cEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 699999999999999999999999999999998885433 589999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy16810 717 LPGDP 721 (755)
Q Consensus 717 v~~~~ 721 (755)
+|+++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 99765
No 77
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=3e-20 Score=183.05 Aligned_cols=133 Identities=40% Similarity=0.632 Sum_probs=115.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
|||+++||+|+|||||+++|+...|.+... .....++|+.+.|+.+|+|..+..+.+.|.. .+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~---------------~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKA---------------KDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEec---------------CCC
Confidence 899999999999999999999998877642 2234578999999999999998888777741 012
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.++|+|||||.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++++||+|+..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 478899999999999999999999999999999999999988998888888888999999999999854
No 78
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.84 E-value=3e-21 Score=166.71 Aligned_cols=85 Identities=36% Similarity=0.615 Sum_probs=78.3
Q ss_pred ceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEeccee
Q psy16810 636 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ 715 (755)
Q Consensus 636 ~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~ 715 (755)
+||||||+++|.+|++++|+|+++|++|||.|++++.. +...+.|+|.+|+++++||..+||++|+|+|.|++.|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 58999999999999999999999999999999999887 33468999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy16810 716 VLPGDP 721 (755)
Q Consensus 716 ~v~~~~ 721 (755)
++++++
T Consensus 80 ~~~~~~ 85 (89)
T PF00679_consen 80 PVPGDI 85 (89)
T ss_dssp EESHHH
T ss_pred ECCCCh
Confidence 999875
No 79
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=1.4e-20 Score=191.41 Aligned_cols=144 Identities=25% Similarity=0.269 Sum_probs=114.9
Q ss_pred EEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC----cccc
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD----QTAK 86 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 86 (755)
|+++||.++|||||+.+|.. +..+.........+|.+.+|.+||+|+..+...+.|...+....+..... ....
T Consensus 2 v~~~G~~~~GKttl~~~~~~--~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred EEEECCCCCCHHHHHHHHHh--CCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 78999999999999999964 44443333334578999999999999887776676665443322221110 0122
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
...++.++|||||||.+|.+++.++++ .+|++++|||+..|...|+++++.++...++|+++++||+|+.
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 335789999999999999999999996 7999999999999999999999999999999999999999984
No 80
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=1.5e-19 Score=206.45 Aligned_cols=133 Identities=28% Similarity=0.247 Sum_probs=92.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+...|+|+||+|||||||+++|....- ....+ +|+|.......+.+......+.... .....
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~--------------ggiTq~iG~~~v~~~~~~~~~~~~~--~~~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV--AKREA--------------GGITQHIGATEIPMDVIEGICGDLL--KKFKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc--ccccC--------------CceecccCeeEeeeccccccccccc--ccccc
Confidence 456799999999999999999965421 11112 3344443333333321100000000 00000
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+.+...++|+|||||.+|...+.++++.+|++++|+|+.+|+..||.+++..+...++|+++++||+|+..
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 00112489999999999999999999999999999999999999999999999999999999999999863
No 81
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.84 E-value=4.5e-21 Score=162.36 Aligned_cols=80 Identities=65% Similarity=1.193 Sum_probs=75.9
Q ss_pred ecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecC
Q psy16810 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718 (755)
Q Consensus 639 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~ 718 (755)
||||+++|++|++++|+|+++|++|||.|++++..+++..+.|+|.+|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999998876555568999999999999999999999999999999999999986
No 82
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.83 E-value=6.4e-21 Score=160.46 Aligned_cols=78 Identities=29% Similarity=0.591 Sum_probs=74.2
Q ss_pred ecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecC
Q psy16810 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718 (755)
Q Consensus 639 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~ 718 (755)
||||+++|+||++++|+|+++|++|||+|.+++..++ .+.|+|++|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGED--EFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCC--eEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 8999999999999999999999999999999986543 58999999999999999999999999999999999999986
No 83
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=2.9e-20 Score=187.06 Aligned_cols=136 Identities=26% Similarity=0.248 Sum_probs=105.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCcccc-ccc------cCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDM-VFI------TNP 81 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~-~~~------~~~ 81 (755)
+|||++||+|||||||+++|. ..++|+.+.|++||+|++.+...+.|....... ... +..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~-------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS-------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh-------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 599999999999999999992 134788999999999999998888874111000 000 000
Q ss_pred Cccc------cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-ceehHHHHHHHHHHcCC-ceEEEEecc
Q psy16810 82 DQTA------KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-VCVQTETVLRQAIAERI-KPVLFMNKM 153 (755)
Q Consensus 82 ~~~~------~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~i-p~iv~iNKi 153 (755)
.... .....++++|||||||.+|..++.++++.+|++++|+|+.++ ...|+..+|..+...++ |+++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 0000 011248999999999999999999999999999999999984 78899999988888887 578899999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 148 Dl~~ 151 (203)
T cd01888 148 DLVK 151 (203)
T ss_pred hccC
Confidence 9853
No 84
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.82 E-value=1.2e-20 Score=158.71 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=73.8
Q ss_pred ecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecC
Q psy16810 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718 (755)
Q Consensus 639 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~ 718 (755)
||||+|+|+||++++|+|+++|++|||.|.+++..+ +.+.|+|.+|++|++||.++||++|+|+|+|+++|+||++|+
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999888654 358999999999999999999999999999999999999984
No 85
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.82 E-value=1.6e-20 Score=155.86 Aligned_cols=72 Identities=44% Similarity=0.716 Sum_probs=67.4
Q ss_pred CceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeC
Q psy16810 399 SPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSD 471 (755)
Q Consensus 399 ~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~ 471 (755)
+|+++++|+|.+++|.++|.+||++|++|||+|++. +++|||++|+||||+||||+++||+++| |++|++++
T Consensus 3 ~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~-~v~v~~~~ 75 (75)
T PF14492_consen 3 PPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF-GVEVEFGK 75 (75)
T ss_dssp S-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT-CEBEEEE-
T ss_pred CCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH-CCeeEecC
Confidence 899999999999999999999999999999999997 7899999999999999999999999999 99999974
No 86
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.81 E-value=2.6e-20 Score=156.99 Aligned_cols=78 Identities=36% Similarity=0.636 Sum_probs=74.0
Q ss_pred ecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecC
Q psy16810 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718 (755)
Q Consensus 639 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~ 718 (755)
||||+|+|+||++++|+|+++|++|||.|.+++..++ .+.|+|.+|++|++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGG--WKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCC--cEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 8999999999999999999999999999999886543 57999999999999999999999999999999999999986
No 87
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.81 E-value=5.1e-20 Score=168.98 Aligned_cols=97 Identities=27% Similarity=0.354 Sum_probs=84.4
Q ss_pred ccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCC
Q psy16810 536 YEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGG 615 (755)
Q Consensus 536 ~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~ 615 (755)
++|+...++.+|+++|...++|++.+...+.++++++.++|++||++|+++|||+||||+||+|+|.|+.+|. .++++
T Consensus 24 ~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~ 101 (120)
T PF03764_consen 24 YGGKRQFAKVILRVEPLEGGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE--VDSSP 101 (120)
T ss_dssp CTSSEEEEEEEEEEEETSTSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--TTBSH
T ss_pred hCCCCceEEEEEEEeecccCCceeeeccccccccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecC--CcCCH
Confidence 5666667778888888767789999988888899999999999999999999999999999999999999997 45667
Q ss_pred CchHHHHHHHHHHHHHhcC
Q psy16810 616 GQIIPTTRRVLYASLLTAC 634 (755)
Q Consensus 616 ~~~~~a~~~a~~~a~~~a~ 634 (755)
++|++|+++||++||++|+
T Consensus 102 ~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 102 GAFRAAARRAFREALKKAG 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8899999999999999985
No 88
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.80 E-value=1.1e-19 Score=153.23 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=73.3
Q ss_pred ecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeec
Q psy16810 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 717 (755)
Q Consensus 639 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v 717 (755)
||||+++|.||++++|+|+++|++|||.|.+++..++ ..+.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~-~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGN-GRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCC-CEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 8999999999999999999999999999999887542 35799999999999999999999999999999999999975
No 89
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.79 E-value=9.7e-19 Score=174.59 Aligned_cols=133 Identities=29% Similarity=0.385 Sum_probs=108.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.||+++||+|+|||||+++|+...+ +..+|...+|++||+|+.....++.|........ ......
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~------~~~~~~ 65 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRE------LINPGE 65 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEecccccccc------cccccc
Confidence 3899999999999999999976421 2457888999999999999888888752110000 000122
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.++.++++|||||.+|..++..+++.+|++++|+|+.+|...++...+..+...++|+++++||+|+.
T Consensus 66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 47899999999999999999999999999999999999999999888888888899999999999985
No 90
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.79 E-value=1.6e-19 Score=152.67 Aligned_cols=79 Identities=41% Similarity=0.643 Sum_probs=74.6
Q ss_pred ecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecC
Q psy16810 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 718 (755)
Q Consensus 639 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~ 718 (755)
||||+++|+||++++|+|+++|++|||.|.+++..+ +..+.|+|.+|++|++||.++||++|+|+|++++.|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999988654 3468999999999999999999999999999999999999985
No 91
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.78 E-value=3e-19 Score=150.72 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=72.7
Q ss_pred ecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhh-cCchHHHhhhcCCcceeEeEecceeec
Q psy16810 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNES-FGFTADLRSNTGGQAFPQCVFDHWQVL 717 (755)
Q Consensus 639 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~g~~~~~f~~y~~v 717 (755)
|||++++|.||++++|+|+++|++|||.|++++..++. .+.|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~-~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDAN-RVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCC-eEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 89999999999999999999999999999999865432 4799999999999 699999999999999999999999975
No 92
>KOG0463|consensus
Probab=99.73 E-value=1.5e-17 Score=170.04 Aligned_cols=309 Identities=17% Similarity=0.220 Sum_probs=198.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC-----c
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD-----Q 83 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~-----~ 83 (755)
..|+++|.+|+|||||+..|.+ |.+++.+..-..-+..+++|.+.|-|.+...--+-|...++..+..+.+. .
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 4689999999999999999844 55655333223346788999999999887766666765444433322111 0
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhccc
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~ 161 (755)
..++..-..|+|||..||..|.+.+..++. ..|...++|.++.|+...|++++.+|..+.+|+++|++|||.+.+++
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANi- 290 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANI- 290 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHH-
Confidence 112223568999999999999999999984 77999999999999999999999999999999999999999976431
Q ss_pred CCHHHHHHHHHHHhhh--ceeeEEEe-cCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q psy16810 162 LDAEDLYQTFQRIVEN--VNVIIATY-SDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMR 238 (755)
Q Consensus 162 ~~~~~~~~~~~~ii~~--v~~~~~~~-~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~ 238 (755)
.++-.+.+.+++.. ...++... +.+ + +.-+..++..+.+-.+.. + +
T Consensus 291 --LqEtmKll~rllkS~gcrK~PvlVrs~D-----D--Vv~~A~NF~Ser~CPIFQ-----v-----------------S 339 (641)
T KOG0463|consen 291 --LQETMKLLTRLLKSPGCRKLPVLVRSMD-----D--VVHAAVNFPSERVCPIFQ-----V-----------------S 339 (641)
T ss_pred --HHHHHHHHHHHhcCCCcccCcEEEeccc-----c--eEEeeccCccccccceEE-----e-----------------c
Confidence 22333334444333 11111000 000 0 011111111110000000 0 0
Q ss_pred hccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEe
Q psy16810 239 TWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKV 318 (755)
Q Consensus 239 ~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL 318 (755)
.....--+||.+..+.+|... ..+.+.|.-..|.++|..|++|. ++-+...+|++
T Consensus 340 NVtG~NL~LLkmFLNlls~R~------------------------~~~E~~PAeFQIDD~Y~VpGVGT-vvSGT~L~GtI 394 (641)
T KOG0463|consen 340 NVTGTNLPLLKMFLNLLSLRR------------------------QLNENDPAEFQIDDIYWVPGVGT-VVSGTLLSGTI 394 (641)
T ss_pred cccCCChHHHHHHHhhcCccc------------------------ccccCCCcceeecceEecCCcce-EeecceeeeeE
Confidence 000111368888888876532 12346788889999999999998 89999999999
Q ss_pred cCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeE--Eeccccceeeecc-eeecC
Q psy16810 319 ATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNIC--GLVGVDQFLVKTG-TITTF 385 (755)
Q Consensus 319 ~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIv--ai~gl~~~~~~~g-Tl~~~ 385 (755)
+.+|.+.+.+ ..+ | ++-...|+ ...+++-+|..+.+|+-. |+.+++...++-| .+.++
T Consensus 395 rLND~LlLGP-d~~-G---~F~pI~iK----SIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp 455 (641)
T KOG0463|consen 395 RLNDILLLGP-DSN-G---DFMPIPIK----SIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSP 455 (641)
T ss_pred EeccEEEecC-CCC-C---Ceeeeehh----hhhhccccceEEeccchhhhHhhhcchhhhhcceEEecC
Confidence 9999987643 211 1 11111222 335677889999999984 5556665445555 44443
No 93
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.71 E-value=1.4e-16 Score=157.86 Aligned_cols=128 Identities=44% Similarity=0.593 Sum_probs=110.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
||+++|.+|+|||||+++|+...............+++....|..+|+|+......+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 60 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP-------------------- 60 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--------------------
Confidence 699999999999999999998876654333333356788888999999998776666663
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+..++||||||+.+|......+++.+|++++|+|+.++...+....+..+...++|+++++||+|+..
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 67899999999999999999999999999999999999988999988888888999999999999864
No 94
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.70 E-value=3.3e-16 Score=186.87 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=161.0
Q ss_pred hHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCCeEEEEEcCCC
Q psy16810 21 KSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPG 100 (755)
Q Consensus 21 KTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPG 100 (755)
||||+++|-..+ -.++..+|||.+.++..+.++.....+....... ....+-..++||||||
T Consensus 474 KTtLLD~iR~t~----------------v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~--~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 474 NTTLLDKIRKTR----------------VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLL--KAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccHHHHHhCCC----------------cccccCCCceeccceEEEEecccccccccccccc--cccCCcCcEEEEECCC
Confidence 999999993221 1334567999999988887752111110000000 0001123489999999
Q ss_pred CcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCH-HH----HHHHHHHHh
Q psy16810 101 HVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDA-ED----LYQTFQRIV 175 (755)
Q Consensus 101 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~-~~----~~~~~~~ii 175 (755)
|.+|...+.++++.+|++++|+|+.+|++.||.+++..+...++|+++++||+|+... +.... .. +..+.+...
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~-~~~~~~~~~~~~~~~q~~~~~ 614 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPG-WNISEDEPFLLNFNEQDQHAL 614 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccc-cccccchhhhhhhhhhHHHHH
Confidence 9999998889999999999999999999999999999999999999999999998521 11100 11 111111111
Q ss_pred hhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHH---HHHhCCCCCccccccchHHHHHHHHHhccCC-------hH
Q psy16810 176 ENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESL---LSKLGIELKPEDKEKDGKALLKVVMRTWLPA-------GE 245 (755)
Q Consensus 176 ~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~l---le~~~~~l~~~~~~~~~~~l~~~~~~~~~p~-------g~ 245 (755)
+.+. +.+..+ +.+.|.. .+.... ....- -.-.++|+ ..
T Consensus 615 ~el~---------------------------~~l~~v~~~L~~~G~~--~e~~~~-~~d~~--~~v~iVpVSA~tGeGId 662 (1049)
T PRK14845 615 TELE---------------------------IKLYELIGKLYELGFD--ADRFDR-VQDFT--RTVAIVPVSAKTGEGIP 662 (1049)
T ss_pred HHHH---------------------------HHHHHHhhHHHhcCcc--hhhhhh-hhhcC--CCceEEEEEcCCCCCHH
Confidence 1110 000011 1111211 000000 00000 00012231 25
Q ss_pred HHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEE
Q psy16810 246 ALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKAR 325 (755)
Q Consensus 246 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~ 325 (755)
.|++++....+.-.+. ....++++|+.+.|..++.+++.|. ++.++|++|+|++||.|.
T Consensus 663 ~Ll~~l~~l~~~~l~~--------------------~L~~~~~~~~~g~VlEv~~~kG~G~-vvt~iv~~G~Lk~GD~iv 721 (1049)
T PRK14845 663 ELLMMVAGLAQKYLEE--------------------RLKLNVEGYAKGTILEVKEEKGLGT-TIDAIIYDGTLRRGDTIV 721 (1049)
T ss_pred HHHHHHHHhhHHhhhh--------------------hhccCCCCceEEEEEEEEEecCcee-EEEEEEEcCEEecCCEEE
Confidence 6666664322110000 0123567899999999999999998 899999999999999999
Q ss_pred EccCCCCCCCcccccccccceEEEe--------ccCceeeeccccCCCeEEec--cccce
Q psy16810 326 IMGPNYIPGKKEDLYEKAIQRTILM--------MGRYVEAIEDVPSGNICGLV--GVDQF 375 (755)
Q Consensus 326 i~~~n~~~~~~e~~~~~~i~~l~~~--------~g~~~~~v~~a~AGdIvai~--gl~~~ 375 (755)
+.+.+ + . ...+|..+... .+.....++++.|+.-|-|. ||+..
T Consensus 722 ~g~~~---~-~---i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~ 774 (1049)
T PRK14845 722 VGGPD---D-V---IVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV 774 (1049)
T ss_pred EccCC---C-c---ceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc
Confidence 86531 1 0 01145555422 11234577888887766663 77664
No 95
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.69 E-value=1.5e-16 Score=153.87 Aligned_cols=116 Identities=29% Similarity=0.349 Sum_probs=95.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
||+++|++|+|||||+++|... ..+..+.|..+++|+......+.+. .
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~-------------------~ 49 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLP-------------------S 49 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEec-------------------C
Confidence 7999999999999999999421 1233455667788887665555442 2
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCC-ceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI-KPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-p~iv~iNKiD~~~ 157 (755)
++.+++|||||+.+|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+..
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 5689999999999999999999999999999999999988899888777777777 8999999999864
No 96
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.67 E-value=5.1e-16 Score=140.66 Aligned_cols=113 Identities=16% Similarity=0.188 Sum_probs=86.5
Q ss_pred EEEEeeccccccceeeeecCCc--eeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCc
Q psy16810 474 VSYRETVSEESDQVCLSKSPNK--HNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGP 551 (755)
Q Consensus 474 V~yrETi~~~~~~~~~~~~~~~--~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp 551 (755)
|+|||||+++++...+....++ +.+++++++|++++.. +.|
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g~g------------------------~~f------------- 43 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRGSG------------------------LQY------------- 43 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCCCC------------------------cEE-------------
Confidence 6899999998875333333344 7899999999875421 111
Q ss_pred CCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHH
Q psy16810 552 DGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLL 631 (755)
Q Consensus 552 ~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~ 631 (755)
.+...+..++.++.++|++||++|+++||| |+||.||+|+|.|+++|+.. ++...|+.|+++|+++|+.
T Consensus 44 --------~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~--ss~~af~~Aa~~a~~~a~~ 112 (115)
T cd01684 44 --------ESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPV--STAADFRELTPRVLRQALK 112 (115)
T ss_pred --------EEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCC--CCHHHHHHHHHHHHHHHHH
Confidence 111123346788889999999999999999 99999999999999999732 2345688999999999999
Q ss_pred hcC
Q psy16810 632 TAC 634 (755)
Q Consensus 632 ~a~ 634 (755)
+|+
T Consensus 113 ~a~ 115 (115)
T cd01684 113 KAG 115 (115)
T ss_pred hcC
Confidence 874
No 97
>KOG1143|consensus
Probab=99.67 E-value=2.4e-16 Score=161.44 Aligned_cols=292 Identities=18% Similarity=0.193 Sum_probs=193.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCccc-ccCCchhhhhhccccccceEEEEeeeCccccccccCCC-cccc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETR-FTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD-QTAK 86 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~-~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (755)
-.++++|..|+|||||++.|. -|..++. .|+.+ -+..+++|...|-|...+.-.+-|+..++..+|.+... ....
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--QgeLDnG-~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--QGELDNG-NGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEecCcccCcceeeeeee--cccccCC-CCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 357999999999999999883 3555542 23333 46789999999999888777777887777777665432 2234
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDA 164 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~ 164 (755)
+..+..++|||..||..|.+.++.+|. ..|.|++||+|..|+...|++|+.++..+++|++++++|||+... ...
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~---~~~ 321 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDR---QGL 321 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccc---hhH
Confidence 445789999999999999999999997 459999999999999999999999999999999999999999641 112
Q ss_pred HHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC--
Q psy16810 165 EDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP-- 242 (755)
Q Consensus 165 ~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p-- 242 (755)
+...+.+..++........ .......++.+....+.. ...++|
T Consensus 322 ~~tv~~l~nll~~~Gc~kv---------------p~~Vt~~ddAv~Aaq~~~--------------------s~nivPif 366 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKV---------------PKRVTTKDDAVKAAQELC--------------------SGNIVPIF 366 (591)
T ss_pred HHHHHHHHHHHhhcCcccc---------------ceEeechHHHHHHHHHhc--------------------cCCceeEE
Confidence 2333333333333211100 001111122222222111 112333
Q ss_pred -------ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEE
Q psy16810 243 -------AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFS 315 (755)
Q Consensus 243 -------~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~s 315 (755)
.|-.||..+.+.+|+...+. .+.. -...|.-..|..+|..|++|. ++-+-+-+
T Consensus 367 ~vSsVsGegl~ll~~fLn~Lsp~~~~~-e~~~------------------L~q~~~eFqvdEiy~Vp~VG~-VVGG~Ls~ 426 (591)
T KOG1143|consen 367 AVSSVSGEGLRLLRTFLNCLSPAGTAE-ERIQ------------------LVQLPAEFQVDEIYNVPHVGQ-VVGGMLSE 426 (591)
T ss_pred EEeecCccchhHHHHHHhhcCCcCChH-HHHH------------------HhcCcceeeHhHeecCCcccc-cccceeee
Confidence 13457777777776543221 1110 113456677888999999998 88999999
Q ss_pred eEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 316 GKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 316 GtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
|.++.|+.+.+.+. ..|.-++ .++..|. +.+.++-.+.||+-..++
T Consensus 427 G~l~Eg~~~~vGP~--~DG~F~~---itV~sI~----Rnr~acrvvraGqaAsls 472 (591)
T KOG1143|consen 427 GQLHEGADVLVGPM--KDGTFEK---ITVGSIR----RNRQACRVVRAGQAASLS 472 (591)
T ss_pred ceeccCceeEeecC--CCCceeE---EEeeeee----ccccceeeecCccceeee
Confidence 99999999987542 1222222 2344443 455677788888876553
No 98
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.65 E-value=8.6e-16 Score=140.13 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=88.5
Q ss_pred EEeeccccccceeeeec----CCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCc
Q psy16810 476 YRETVSEESDQVCLSKS----PNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGP 551 (755)
Q Consensus 476 yrETi~~~~~~~~~~~~----~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp 551 (755)
|||||.++++....+.. .+++.+++++++|++++.
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~----------------------------------------- 39 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGS----------------------------------------- 39 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCCC-----------------------------------------
Confidence 89999988764333322 456789999999986431
Q ss_pred CCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHH
Q psy16810 552 DGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLL 631 (755)
Q Consensus 552 ~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~ 631 (755)
+|.+++...+..+++++.++|++||++|+++|||||+||+|++|+|.++.+|.+ .+.+++|++|+++||++||+
T Consensus 40 ----~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~~al~ 113 (116)
T cd01680 40 ----GVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFESAAQ 113 (116)
T ss_pred ----CcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHHHHHH
Confidence 133333334445678899999999999999999999999999999999999864 34567899999999999999
Q ss_pred hcC
Q psy16810 632 TAC 634 (755)
Q Consensus 632 ~a~ 634 (755)
+|+
T Consensus 114 ~a~ 116 (116)
T cd01680 114 KAG 116 (116)
T ss_pred hcC
Confidence 874
No 99
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.64 E-value=9.6e-16 Score=133.84 Aligned_cols=94 Identities=40% Similarity=0.707 Sum_probs=78.2
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
++++|||+.++|+.|.+++|+|||||+|++||.|++++++.+.+..++....+|++++.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999998555999999999999999999876544333222223347999999999999999999999999999
Q ss_pred cccceeeecceeec
Q psy16810 371 GVDQFLVKTGTITT 384 (755)
Q Consensus 371 gl~~~~~~~gTl~~ 384 (755)
|+++..++.+|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99998887778763
No 100
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.63 E-value=9.7e-16 Score=131.01 Aligned_cols=84 Identities=20% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeE
Q psy16810 288 NAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNIC 367 (755)
Q Consensus 288 ~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIv 367 (755)
++||+++|||+.++++.|+ ++|+|||||+|++||.|++. + ++.+ ++++++.++|.++.++++|.|||||
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~----~-~~~~-----~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 1 ESELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVN----R-EEKI-----KITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CCCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeC----C-CcEE-----EeceeEEEeCCCeEECcEECCCCEE
Confidence 3699999999999999998 99999999999999999843 2 3333 7899999999999999999999999
Q ss_pred Eeccccceeeecceee
Q psy16810 368 GLVGVDQFLVKTGTIT 383 (755)
Q Consensus 368 ai~gl~~~~~~~gTl~ 383 (755)
++.|++++. .++||+
T Consensus 70 ai~gl~~~~-~Gdtl~ 84 (85)
T cd03690 70 ILTGLKGLR-VGDVLG 84 (85)
T ss_pred EEECCCCCc-CccccC
Confidence 999998853 355764
No 101
>COG1159 Era GTPase [General function prediction only]
Probab=99.60 E-value=2.2e-14 Score=146.11 Aligned_cols=116 Identities=28% Similarity=0.335 Sum_probs=95.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+.--|||+|.+|+|||||+++|+...-+|.+.++.+|| -+-+||..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-------~~I~GI~t--------------------------- 50 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR-------NRIRGIVT--------------------------- 50 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh-------hheeEEEE---------------------------
Confidence 34568999999999999999999888888877777765 12233322
Q ss_pred CCCCeEEEEEcCCCCc--------ccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHV--------DFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~--------df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++++|.|+||||.- -...++..++..+|.+++|||+.++.....+.++.+.+..+.|+|+++||+|+..
T Consensus 51 -~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 51 -TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred -cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 147899999999983 2456677889999999999999999999999999999887889999999999864
No 102
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.60 E-value=8.1e-15 Score=142.44 Aligned_cols=116 Identities=32% Similarity=0.384 Sum_probs=89.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
++|+++|+.++|||||+++|+... .. . ...+++|.......+.+. ..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~--~~----------~----~~~~~~t~~~~~~~~~~~-----------------~~ 47 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN--VA----------A----GEAGGITQHIGAFEVPAE-----------------VL 47 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc--cc----------c----ccCCCeEEeeccEEEecc-----------------cC
Confidence 469999999999999999995421 11 0 012234433322222221 01
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.++++||||+.+|......+++.+|++++|+|++++...++...+..+...++|+++++||+|+..
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 267899999999999988888899999999999999999988999888888889999999999999863
No 103
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.59 E-value=4.9e-15 Score=126.40 Aligned_cols=83 Identities=29% Similarity=0.407 Sum_probs=71.6
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
|+++|||++++++.|+ ++|+|||||+|++||.|++.. .++++ ++++++.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~----~~~~~-----~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTN----TGKKE-----RISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECC----CCCEE-----EeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999998 999999999999999999653 23333 7899999999999999999999999999
Q ss_pred cccceeeecceeec
Q psy16810 371 GVDQFLVKTGTITT 384 (755)
Q Consensus 371 gl~~~~~~~gTl~~ 384 (755)
|+++.. .++|+++
T Consensus 71 gl~~~~-~Gdtl~~ 83 (83)
T cd04092 71 GLKQTR-TGDTLVT 83 (83)
T ss_pred CCCCcc-cCCEEeC
Confidence 998853 3568763
No 104
>KOG1144|consensus
Probab=99.59 E-value=1.7e-14 Score=159.00 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=92.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-+.+||+||+|+|||-|++.|-..+- . +.-..|||.+..+..|.-. +..............+
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNV-q---------------egeaggitqqIgAt~fp~~--ni~e~tk~~~~~~K~~ 536 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNV-Q---------------EGEAGGITQQIGATYFPAE--NIREKTKELKKDAKKR 536 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccc-c---------------cccccceeeeccccccchH--HHHHHHHHHHhhhhhh
Confidence 45789999999999999999844211 1 1112345554444433221 0000000000000000
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.+---+.+||||||..|..-..++...||.||+|||...|+.+||.+-+.+++..+.|+||.+||+||.-
T Consensus 537 ~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 537 LKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred cCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc
Confidence 1122478899999999999999999999999999999999999999999999999999999999999973
No 105
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.56 E-value=1.9e-14 Score=131.05 Aligned_cols=112 Identities=20% Similarity=0.242 Sum_probs=87.3
Q ss_pred EEeeccccccceeeee----cCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCc
Q psy16810 476 YRETVSEESDQVCLSK----SPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGP 551 (755)
Q Consensus 476 yrETi~~~~~~~~~~~----~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp 551 (755)
|||||+++++....++ ..+++.+++++++|++++..
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g~g---------------------------------------- 40 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGSG---------------------------------------- 40 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCCCC----------------------------------------
Confidence 8999999876433322 24557799999999875421
Q ss_pred CCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHH
Q psy16810 552 DGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLL 631 (755)
Q Consensus 552 ~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~ 631 (755)
|.+.+...+.+++.++.++|.+||++|+++|||+|+||+||+|+|.++.+|+.. .++.+|++|+++|+++|+.
T Consensus 41 -----~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~--s~~~~~~~aa~~a~~~al~ 113 (116)
T cd01434 41 -----FEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVD--SSEMAFKIAARMAFKEAFK 113 (116)
T ss_pred -----CEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCC--CCHHHHHHHHHHHHHHHHH
Confidence 122223345567889999999999999999999999999999999999999622 2356799999999999999
Q ss_pred hcC
Q psy16810 632 TAC 634 (755)
Q Consensus 632 ~a~ 634 (755)
+|+
T Consensus 114 ~a~ 116 (116)
T cd01434 114 KAK 116 (116)
T ss_pred hcC
Confidence 874
No 106
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.55 E-value=1.6e-14 Score=123.28 Aligned_cols=81 Identities=28% Similarity=0.416 Sum_probs=70.3
Q ss_pred EEEEeeec---cCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe
Q psy16810 293 MYVSKMVP---TSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369 (755)
Q Consensus 293 ~~V~K~~~---~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai 369 (755)
++|||+.+ +|+.|+ ++|+|||||+|++||.|++. +.++++ ++++|+.++|.+..+++++.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~----~~~~~~-----kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHV----RLGKEV-----RLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEc----CCCCEE-----EeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 58999999 999998 89999999999999999953 334443 789999999999999999999999999
Q ss_pred ccccceeeecceeec
Q psy16810 370 VGVDQFLVKTGTITT 384 (755)
Q Consensus 370 ~gl~~~~~~~gTl~~ 384 (755)
.|++++. .++||++
T Consensus 71 ~gl~~~~-~Gdtl~~ 84 (85)
T cd03689 71 VNPGNFQ-IGDTLTE 84 (85)
T ss_pred ECCCCcc-ccCEeeC
Confidence 9999854 3668874
No 107
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.54 E-value=5e-14 Score=129.14 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=83.1
Q ss_pred EEEEeeccccccceeeee----cCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEe
Q psy16810 474 VSYRETVSEESDQVCLSK----SPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSF 549 (755)
Q Consensus 474 V~yrETi~~~~~~~~~~~----~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 549 (755)
|+|||||+++++....++ ..+++.+++++++|++++... .+.+ .|
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~----------------------~~~i---------~~ 49 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSP----------------------VELI---------EL 49 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCC----------------------Ccee---------Ee
Confidence 689999999866433322 245678999999998754200 0000 01
Q ss_pred CcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHH
Q psy16810 550 GPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYAS 629 (755)
Q Consensus 550 gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a 629 (755)
. +. .+...+.++.++|++|++.|+++|||+|+||+||+|+|.++.+|...+ ...++.|++.|+++|
T Consensus 50 ~----------~~-~~~~~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~s---~~~~~~Aa~~a~~~a 115 (120)
T cd01693 50 A----------NS-AIEVLLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTS---PTMISACASQCVQKA 115 (120)
T ss_pred c----------Cc-cCCcChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCCC---HHHHHHHHHHHHHHH
Confidence 0 00 122356788899999999999999999999999999999999996422 123457799999999
Q ss_pred HHhcC
Q psy16810 630 LLTAC 634 (755)
Q Consensus 630 ~~~a~ 634 (755)
|.+|+
T Consensus 116 l~~a~ 120 (120)
T cd01693 116 LKSAG 120 (120)
T ss_pred HHhcc
Confidence 98874
No 108
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.53 E-value=2.7e-14 Score=121.85 Aligned_cols=82 Identities=27% Similarity=0.430 Sum_probs=71.0
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
|+|+|||+.++++.|+ ++|+|||||+|++||.|++.. .++++ ++++++.++|.+..+++++.|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~----~~~~~-----~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNST----KGKKE-----RVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECC----CCcEE-----EeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999999998 999999999999999999653 23333 6899999999999999999999999999
Q ss_pred cccceeeecceee
Q psy16810 371 GVDQFLVKTGTIT 383 (755)
Q Consensus 371 gl~~~~~~~gTl~ 383 (755)
|+++.. .++|++
T Consensus 71 g~~~~~-~Gdtl~ 82 (83)
T cd04088 71 GLKDTA-TGDTLC 82 (83)
T ss_pred CCCCCc-cCCEee
Confidence 998843 355775
No 109
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.52 E-value=4.4e-14 Score=119.82 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=69.1
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
|+|+|||+.+++. |+ ++|+|||||+|++||.|++.. .++++ ++.+++.++|.++.+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~----~~~~~-----~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVR----TGKKV-----RVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcC----CCCEE-----EEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999987 98 999999999999999999543 34444 7899999999999999999999999999
Q ss_pred cccceeeecceee
Q psy16810 371 GVDQFLVKTGTIT 383 (755)
Q Consensus 371 gl~~~~~~~gTl~ 383 (755)
|++ . ..++||+
T Consensus 70 g~~-~-~~Gdtl~ 80 (81)
T cd04091 70 GID-C-ASGDTFT 80 (81)
T ss_pred CCC-c-ccCCEec
Confidence 997 4 3466875
No 110
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.51 E-value=1.4e-13 Score=155.12 Aligned_cols=115 Identities=23% Similarity=0.260 Sum_probs=90.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|++|+|||||+++|+.....+... ..|.|..+....+.+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~------------------ 218 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFER------------------ 218 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEE------------------
Confidence 45799999999999999999998754433322 234555544344444
Q ss_pred CCCCeEEEEEcCCCCccc-----------HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 87 NEKGFLINLIDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df-----------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
++..++|+||||+.+. ...+.++++.+|++|+|+|+.+|...|+..+++++.+.+.|+++++||+|+
T Consensus 219 --~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl 296 (435)
T PRK00093 219 --DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDL 296 (435)
T ss_pred --CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 3678999999997432 123556889999999999999999999999999999999999999999998
Q ss_pred h
Q psy16810 156 A 156 (755)
Q Consensus 156 ~ 156 (755)
.
T Consensus 297 ~ 297 (435)
T PRK00093 297 V 297 (435)
T ss_pred C
Confidence 5
No 111
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=4.1e-13 Score=126.82 Aligned_cols=139 Identities=24% Similarity=0.270 Sum_probs=101.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..-.|+++|+.|+||||+++++......+......+ +.... .|..|+.-...++.+.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~----~s~k~--kr~tTva~D~g~~~~~----------------- 65 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS----VSGKG--KRPTTVAMDFGSIELD----------------- 65 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccc----ccccc--ccceeEeecccceEEc-----------------
Confidence 346899999999999999999987765443211100 00000 2334443333333332
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC-CceEEEEeccchhhhcccCCHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-IKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
+++.+.|.|||||..|...+.-.++.+++||++||++.+.....+.+++...... +|.+|++||.|+..+ .+++
T Consensus 66 --~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a---~ppe 140 (187)
T COG2229 66 --EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA---LPPE 140 (187)
T ss_pred --CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC---CCHH
Confidence 3589999999999999999999999999999999999988776677888887777 999999999999874 5666
Q ss_pred HHHHHHHH
Q psy16810 166 DLYQTFQR 173 (755)
Q Consensus 166 ~~~~~~~~ 173 (755)
++.+.+..
T Consensus 141 ~i~e~l~~ 148 (187)
T COG2229 141 KIREALKL 148 (187)
T ss_pred HHHHHHHh
Confidence 66554443
No 112
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=148.11 Aligned_cols=113 Identities=25% Similarity=0.270 Sum_probs=95.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+.|+|+|.+|+|||||.++|+...-+|....+|.|| +.......|.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTR---------------Dr~y~~~~~~------------------- 49 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTR---------------DRIYGDAEWL------------------- 49 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCcc---------------CCccceeEEc-------------------
Confidence 789999999999999999998877777665666544 3333455674
Q ss_pred CCeEEEEEcCCCCccc---------HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDF---------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df---------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
++.+.+|||+|..+. ..++..|+..||.+|+|||+.+|+.++.+.+.+.++..++|+|+|+||+|..
T Consensus 50 -~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 50 -GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred -CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 778999999999743 2457779999999999999999999999999999998889999999999974
No 113
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.49 E-value=1.3e-13 Score=120.17 Aligned_cols=90 Identities=59% Similarity=1.003 Sum_probs=71.4
Q ss_pred eEEEEEeeeccC-CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe
Q psy16810 291 LMMYVSKMVPTS-DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369 (755)
Q Consensus 291 l~~~V~K~~~~~-~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai 369 (755)
++++|||+.+++ +.|+ ++|+|||||+|++||.|++..++...+.++.....++++++.++|.+..++++|.|||||++
T Consensus 1 ~v~~v~Ki~~~~~~~g~-la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGGF-IAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCEE-EEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999999 7776 99999999999999999977643221111112223789999999999999999999999999
Q ss_pred ccccceeeecceee
Q psy16810 370 VGVDQFLVKTGTIT 383 (755)
Q Consensus 370 ~gl~~~~~~~gTl~ 383 (755)
.|+++ ++.|+++
T Consensus 80 ~g~~~--~~~g~~~ 91 (93)
T cd03700 80 VGLDQ--LKSGTTA 91 (93)
T ss_pred ECCcc--CceEeEe
Confidence 99987 3456544
No 114
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=1.1e-13 Score=132.69 Aligned_cols=111 Identities=23% Similarity=0.240 Sum_probs=83.0
Q ss_pred EEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCCe
Q psy16810 12 SVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGF 91 (755)
Q Consensus 12 ~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (755)
+++|++|+|||||+++|+......... ..+.|.........+ .++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~--------------------~~~ 45 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED---------------TPGVTRDRIYGEAEW--------------------GGR 45 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC---------------CCCceeCceeEEEEE--------------------CCe
Confidence 589999999999999996432111100 112333222223333 367
Q ss_pred EEEEEcCCCCcccHH--------HHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 92 LINLIDSPGHVDFSS--------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 92 ~i~lIDtPGh~df~~--------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++++||||+.++.. +....++.+|++++|+|+..+...++..+++++...++|+++++||+|+..
T Consensus 46 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred EEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 899999999988644 556788999999999999998888888888888888999999999999864
No 115
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.49 E-value=2.5e-13 Score=131.98 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=80.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
||+++|+.|+|||||+++|....+.. .+. ... ....|+......+.+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~----~~~------~~~--~~~~t~~~~~~~~~~~-------------------- 48 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY----KGL------PPS--KITPTVGLNIGTIEVG-------------------- 48 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc----cCC------ccc--ccCCccccceEEEEEC--------------------
Confidence 79999999999999999996543210 010 000 1122333333344442
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-ehHHHHHHHH----HHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-VQTETVLRQA----IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-~qt~~~~~~~----~~~~ip~iv~iNKiD~~~ 157 (755)
+..++++||||+.+|.......++.+|++++|+|+.+.-. .+....+..+ ...++|+++++||+|+..
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 6899999999999999989999999999999999987532 1122223322 235789999999999864
No 116
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.48 E-value=1.1e-12 Score=138.16 Aligned_cols=111 Identities=29% Similarity=0.230 Sum_probs=80.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
-|+++|++|+|||||+++|+...-.+.+..+++|+. ..+|+ .+. +
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-------~i~~i---------~~~-------------------~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-------RISGI---------HTT-------------------G 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-------cEEEE---------EEc-------------------C
Confidence 489999999999999999976543333334443321 01111 111 3
Q ss_pred CeEEEEEcCCCCccc--------HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDF--------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df--------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+.++.|+||||+.+. ...+..+++.+|++++|+|++.+...+ +.++..+...+.|+++++||+|+.
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 568999999998542 334567889999999999999876554 666777778899999999999985
No 117
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.48 E-value=3.9e-13 Score=151.32 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=90.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|++|+|||||+++|+.....+.... .|.|..+....+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~---------------~gtt~~~~~~~~~~~----------------- 218 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDI---------------AGTTRDSIDIPFERN----------------- 218 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCC---------------CCceECcEeEEEEEC-----------------
Confidence 346899999999999999999976543332212 244554444444442
Q ss_pred CCCCeEEEEEcCCCCcccH-----------HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 87 NEKGFLINLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~-----------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
+..+.++||||+.++. ..+..+++.+|++|+|+|+.+|...|+..+++++.+.++|+++++||+|+
T Consensus 219 ---~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 219 ---GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDL 295 (429)
T ss_pred ---CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECccc
Confidence 5689999999985542 23456789999999999999999999999999999999999999999998
Q ss_pred h
Q psy16810 156 A 156 (755)
Q Consensus 156 ~ 156 (755)
.
T Consensus 296 ~ 296 (429)
T TIGR03594 296 V 296 (429)
T ss_pred C
Confidence 5
No 118
>PRK15494 era GTPase Era; Provisional
Probab=99.48 E-value=1.2e-12 Score=141.82 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=83.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|++|+|||||+++|+...-.+.....++| .......+.+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tT---------------r~~~~~~~~~------------------ 97 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTT---------------RSIITGIITL------------------ 97 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCc---------------cCcEEEEEEe------------------
Confidence 4569999999999999999999754332222222222 1111112223
Q ss_pred CCCCeEEEEEcCCCCccc--------HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDF--------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df--------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++++++|+||||..+. ......+++.+|++++|+|+.++....+..++..+...+.|.|+|+||+|+..
T Consensus 98 --~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 98 --KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred --CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 3678999999998542 23334568899999999999998877777777777888899999999999853
No 119
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.46 E-value=2.3e-13 Score=116.92 Aligned_cols=85 Identities=27% Similarity=0.463 Sum_probs=70.7
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
|.|+|||+..+++.|+ ++|+|||||+|++||.|++...+ +. ....++++++.++|.+..+++++.||||+++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~---~~---~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD---GK---IEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC---CC---EEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 5799999999999998 99999999999999999976432 10 11126889999999999999999999999999
Q ss_pred cccceeeecceee
Q psy16810 371 GVDQFLVKTGTIT 383 (755)
Q Consensus 371 gl~~~~~~~gTl~ 383 (755)
|+++.. .++||+
T Consensus 74 gl~~~~-~Gdtl~ 85 (86)
T cd03691 74 GIEDIT-IGDTIC 85 (86)
T ss_pred CCCCCc-ccceec
Confidence 998753 355764
No 120
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.46 E-value=4.8e-13 Score=130.13 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=84.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.++|+++|++|+|||||+++|+.....+... .++.|.......+.+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~------------------- 47 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD---------------IAGTTRDSIDVPFEY------------------- 47 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC---------------CCCCccCceeeEEEE-------------------
Confidence 4689999999999999999996543222111 123333332223333
Q ss_pred CCCeEEEEEcCCCCcccH-----------HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~-----------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
++..+++|||||+.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+.
T Consensus 48 -~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 48 -DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred -CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 25678999999985541 234557789999999999999988888888888888899999999999986
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 127 ~ 127 (174)
T cd01895 127 E 127 (174)
T ss_pred C
Confidence 4
No 121
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=8.8e-13 Score=141.75 Aligned_cols=116 Identities=24% Similarity=0.318 Sum_probs=98.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
....|||+|.+|+|||||+++|+.....+....+|+|+ ++-...+.|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTR---------------D~I~~~~e~------------------ 223 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR---------------DSIDIEFER------------------ 223 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccc---------------cceeeeEEE------------------
Confidence 35789999999999999999999888888777777644 444445555
Q ss_pred CCCCeEEEEEcCCCCc----------cc-HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 87 NEKGFLINLIDSPGHV----------DF-SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~----------df-~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
++.++.||||.|.. .| ...+..|+..+|.+++|+||.+|+..|.+.+..++.+.|.+.++++||.|.
T Consensus 224 --~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl 301 (444)
T COG1160 224 --DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDL 301 (444)
T ss_pred --CCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 38899999999983 23 245778999999999999999999999999999999999999999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 302 ~~ 303 (444)
T COG1160 302 VE 303 (444)
T ss_pred CC
Confidence 54
No 122
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=4.5e-13 Score=130.01 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=80.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..++|+++|+.|+|||||+++|+. +... + +....++.......+.+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~--~~~~----------~----~~~~t~~~~~~~~~~~~~----------------- 48 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS--GTFS----------E----RQGNTIGVDFTMKTLEIE----------------- 48 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCc----------c----cCCCccceEEEEEEEEEC-----------------
Confidence 468999999999999999999854 2111 0 000111111122233332
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HH---HcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AI---AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~---~~~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+.+|.......++.+|++++|+|+++....+....|.. .. ..++|+++|+||+|+..
T Consensus 49 -~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 49 -GKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred -CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 123688999999999999988999999999999999998765554444432 22 24689999999999864
No 123
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.41 E-value=6.1e-13 Score=114.16 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=66.0
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
|+|+|||+.++++.|+ ++|+|||||+|++||.|++.. .++++ ++++++.+ +.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~----~~~~~-----~i~~l~~~-~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMS----TGKEY-----EVEEVGIF-RPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEec----CCCeE-----EEEEEEEE-CCCccCCceECCCCEEEEE
Confidence 5799999999999998 899999999999999998543 34444 68899954 7778999999999999996
Q ss_pred -c---ccceeeecceee
Q psy16810 371 -G---VDQFLVKTGTIT 383 (755)
Q Consensus 371 -g---l~~~~~~~gTl~ 383 (755)
| ++++. .++||+
T Consensus 70 ~g~~~l~~~~-~Gdtl~ 85 (86)
T cd03699 70 AGIKTVKDAR-VGDTIT 85 (86)
T ss_pred ccccccCccc-cccEee
Confidence 4 55543 355876
No 124
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.41 E-value=9.2e-13 Score=148.31 Aligned_cols=113 Identities=23% Similarity=0.248 Sum_probs=90.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+|+|++|+|||||+++|+.....+.... .|+|.......+.|.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~---------------~g~t~d~~~~~~~~~-------------------- 45 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDT---------------PGVTRDRKYGDAEWG-------------------- 45 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCC---------------CCcccCceEEEEEEC--------------------
Confidence 389999999999999999975443222112 244544444555664
Q ss_pred CeEEEEEcCCCCc--------ccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHV--------DFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~--------df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+..+++|||||+. .+...+..+++.+|++++|+|+.+|.......+++.+++.++|+++|+||+|...
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 7789999999983 4556678899999999999999999999999999999999999999999999864
No 125
>PRK00089 era GTPase Era; Reviewed
Probab=99.41 E-value=5.1e-12 Score=134.74 Aligned_cols=115 Identities=25% Similarity=0.293 Sum_probs=83.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+--.|+++|++|+|||||+++|+...-.+.....++++ .. +...+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~----------------~~-i~~i~~----------------- 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR----------------HR-IRGIVT----------------- 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc----------------cc-EEEEEE-----------------
Confidence 45689999999999999999997643333222222211 00 011111
Q ss_pred CCCCeEEEEEcCCCCccc--------HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 87 NEKGFLINLIDSPGHVDF--------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df--------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.++.++.|+||||+.+. ...+..++..+|++++|+|+..+.......++..+...+.|+++++||+|+.
T Consensus 50 -~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 50 -EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred -cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 13578999999998553 3455668889999999999999777777777777777789999999999985
No 126
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=3.9e-12 Score=144.25 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=87.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..++|+++|++|+|||||+++|+.....+....+ |.|.......+.+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~---------------gtT~d~~~~~~~~------------------ 256 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVA---------------GTTVDPVDSLIEL------------------ 256 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCC---------------CccCCcceEEEEE------------------
Confidence 4689999999999999999999754332222222 3444333333444
Q ss_pred CCCCeEEEEEcCCCCc---------ccHHHH--HHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 87 NEKGFLINLIDSPGHV---------DFSSEV--TAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~---------df~~~~--~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
++..+.|+||||.. +|...+ ..+++.+|++|+|+|++++...|...++..+...++|+|+|+||+|+
T Consensus 257 --~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 257 --GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred --CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 26788999999962 333332 34678999999999999999999999999888899999999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 335 ~~ 336 (472)
T PRK03003 335 VD 336 (472)
T ss_pred CC
Confidence 53
No 127
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=1.4e-12 Score=147.79 Aligned_cols=118 Identities=21% Similarity=0.298 Sum_probs=89.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
..++++|+|+|.+|+|||||+++|+.....+.... .|+|.......+.|
T Consensus 35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~---------------~gvT~d~~~~~~~~---------------- 83 (472)
T PRK03003 35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDV---------------PGVTRDRVSYDAEW---------------- 83 (472)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCC---------------CCCCEeeEEEEEEE----------------
Confidence 34578999999999999999999975432222111 24444433333344
Q ss_pred ccCCCCeEEEEEcCCCCcc--------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 85 AKNEKGFLINLIDSPGHVD--------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~d--------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+++.++|+||||+.. |...+..+++.+|++|+|+|++.+.......++..+...++|+++|+||+|+.
T Consensus 84 ----~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 84 ----NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred ----CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 367899999999863 45556778999999999999999988777788888888999999999999985
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 160 ~ 160 (472)
T PRK03003 160 R 160 (472)
T ss_pred c
Confidence 4
No 128
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.39 E-value=1.6e-12 Score=123.30 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=78.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+++|.+|+|||||.++|......+. ..+ |.|+......+.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~-n~p---------------G~Tv~~~~g~~~~~------------------- 45 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVG-NWP---------------GTTVEKKEGIFKLG------------------- 45 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEE-EST---------------TSSSEEEEEEEEET-------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceec-CCC---------------CCCeeeeeEEEEec-------------------
Confidence 3699999999999999999966442221 122 56666555555553
Q ss_pred CCeEEEEEcCCCCcccH----HH--HHHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFS----SE--VTAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~----~~--~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+..+.|||+||.-++. .| +...+ ...|++++|+||+. ..+...+..++.+.++|+++++||+|...
T Consensus 46 -~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 46 -DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp -TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred -CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 6899999999964432 12 22233 47899999999987 35666777888999999999999999975
No 129
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39 E-value=1.3e-12 Score=127.15 Aligned_cols=119 Identities=17% Similarity=0.238 Sum_probs=83.3
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccc--cceEEEEeeeCcccccccc
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIK--STAISMYFELDDKDMVFIT 79 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~ 79 (755)
|++.+..++|+++|+.|+|||||+++|.. +.... ..+.|+. .....+.+.
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~---------- 52 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP----------------GQGATIGVDFMIKTVEIK---------- 52 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHh--CCCCC----------------CCCCceeeEEEEEEEEEC----------
Confidence 55556789999999999999999999853 11110 0122222 112223332
Q ss_pred CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH----HHHHHcCCceEEEEeccch
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL----RQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~ip~iv~iNKiD~ 155 (755)
+....+.++||||+.+|.......++.+|++++|+|+..+...+....| +.....++|.+++.||+|+
T Consensus 53 --------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~ 124 (169)
T cd04114 53 --------GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124 (169)
T ss_pred --------CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 1235688999999999999999999999999999999877544433334 2223346899999999998
Q ss_pred h
Q psy16810 156 A 156 (755)
Q Consensus 156 ~ 156 (755)
.
T Consensus 125 ~ 125 (169)
T cd04114 125 A 125 (169)
T ss_pred c
Confidence 5
No 130
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.39 E-value=2.3e-12 Score=126.99 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=79.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+|+|+.|+|||||+++|+..... . .+.+ ..|.|.... .|.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~-------~~~~------~~~~t~~~~----~~~---------------- 61 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-A-------RTSK------TPGRTQLIN----FFE---------------- 61 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c-------cccC------CCCcceEEE----EEE----------------
Confidence 56789999999999999999999653211 0 0000 012222111 121
Q ss_pred cCCCCeEEEEEcCCCCc----------ccHHHHHHHhh---hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEec
Q psy16810 86 KNEKGFLINLIDSPGHV----------DFSSEVTAALR---VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNK 152 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~----------df~~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNK 152 (755)
.+..+.|+||||+. +|...+...++ .+|++++|+|+..+...++..+++.+...++|+++++||
T Consensus 62 ---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK 138 (179)
T TIGR03598 62 ---VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTK 138 (179)
T ss_pred ---eCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 01268999999963 24333334444 468999999999999999988889999999999999999
Q ss_pred cchh
Q psy16810 153 MDRA 156 (755)
Q Consensus 153 iD~~ 156 (755)
+|+.
T Consensus 139 ~D~~ 142 (179)
T TIGR03598 139 ADKL 142 (179)
T ss_pred cccC
Confidence 9985
No 131
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=2.6e-12 Score=144.81 Aligned_cols=113 Identities=23% Similarity=0.247 Sum_probs=87.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+.|+|+|++|+|||||+++|+.....+.... -|+|.......+.|.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~---------------~~~t~d~~~~~~~~~------------------- 47 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADT---------------PGVTRDRIYGEAEWL------------------- 47 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCC---------------CCCcccceEEEEEEC-------------------
Confidence 5799999999999999999965432222111 234444333444553
Q ss_pred CCeEEEEEcCCCCcc--------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVD--------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d--------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+..+++|||||+.+ +...+..+++.+|++|+|+|+.++.......++.++.+.++|+++++||+|..
T Consensus 48 -~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 48 -GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred -CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 68899999999988 33445678899999999999999988888888888888999999999999964
No 132
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.36 E-value=2e-12 Score=124.11 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=77.1
Q ss_pred EEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCCeE
Q psy16810 13 VIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFL 92 (755)
Q Consensus 13 iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (755)
++|+.|+|||||+++|...... . ....|+|+......+.|. +..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-----~-----------~~~~~~t~~~~~~~~~~~--------------------~~~ 44 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-----V-----------GNWPGVTVEKKEGRFKLG--------------------GKE 44 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-----c-----------cCCCCcccccceEEEeeC--------------------CeE
Confidence 5899999999999999432100 0 112466776665666663 578
Q ss_pred EEEEcCCCCcccHHH------HHHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 93 INLIDSPGHVDFSSE------VTAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 93 i~lIDtPGh~df~~~------~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++|+||||+.+|... ....+ ..+|++++|+|+... .+....+.++...++|+++++||+|+..
T Consensus 45 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 45 IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred EEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 999999999887642 23344 389999999999873 2334455667778999999999999864
No 133
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.35 E-value=4.4e-12 Score=121.32 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=77.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|++|+|||||+++|+.......... .+.|.......+.+ .
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~--------------------~ 47 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDI---------------AGTTRDVIEESIDI--------------------G 47 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCC---------------CCCccceEEEEEEe--------------------C
Confidence 689999999999999999965432211111 13333322233333 2
Q ss_pred CeEEEEEcCCCCcccHHH--------HHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSE--------VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~--------~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+..++++||||+.++... +...++.+|++++|+|+...........+.. ..+.|+++++||+|+..
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 678999999999877432 4457789999999999997655554444443 56889999999999864
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.35 E-value=1.3e-12 Score=124.49 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=72.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|+.|+|||||+++|+... ... +..++++.......+.+. .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~---------------~~~~~~~~~~~~~~~~~~------------------~ 47 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT---------------EYKPGTTRNYVTTVIEED------------------G 47 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC---------------cCCCCceeeeeEEEEEEC------------------C
Confidence 689999999999999999996532 111 111233333222222221 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhh-------cCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRV-------TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~-------~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
..+.+.++||||+.+|........+. .|.+++|+|+..+...+...+++.+.. ++|+++++||+|+..
T Consensus 48 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 48 KTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCc
Confidence 12789999999999995544444444 455555555555444555555555544 899999999999964
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.35 E-value=8e-12 Score=121.64 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=72.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
||+++|++|+|||||+++|......+. ... +.|.......+.+. +
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-~~~---------------~~t~~~~~~~~~~~-------------------~ 46 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-DYP---------------FTTLVPNLGVVRVD-------------------D 46 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-CCC---------------ccccCCcceEEEcC-------------------C
Confidence 799999999999999999954221111 011 12222222233332 1
Q ss_pred CeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCc-ceehHHHHH-HHHHH-----cCCceEEEEeccch
Q psy16810 90 GFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSG-VCVQTETVL-RQAIA-----ERIKPVLFMNKMDR 155 (755)
Q Consensus 90 ~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~-~~~~~-----~~ip~iv~iNKiD~ 155 (755)
...++|+||||+.+ +.....+.+..+|++++|+|++++ -..+....| ..+.. .++|+++++||+|+
T Consensus 47 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 47 GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 23899999999742 344556667789999999999986 222332223 22332 36899999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 127 ~~ 128 (170)
T cd01898 127 LD 128 (170)
T ss_pred CC
Confidence 53
No 136
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.33 E-value=4.9e-12 Score=123.52 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=79.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|+.|+|||||+++++.. ... .+....++.......+.+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~--~~~--------------~~~~~t~~~~~~~~~~~~~------------------ 47 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAG--RFP--------------ERTEATIGVDFRERTVEID------------------ 47 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC--CCC--------------CccccceeEEEEEEEEEEC------------------
Confidence 578999999999999999999531 111 0001111111111122221
Q ss_pred CCCeEEEEEcCCCCcccHHH-HHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH----cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSE-VTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~-~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+..+.++++||||+.+|... ....++.+|++++|+|+.+....+....|. .+.. .++|+++|.||+|+..
T Consensus 48 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 48 GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 23578999999999998743 566678999999999999877666666665 3333 3589999999999864
No 137
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.33 E-value=1.3e-11 Score=124.14 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=75.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
++|.++|+.|+|||||+.+|.... .. .+ ++ ++......+... ...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~--~~----~t--~~-----------s~~~~~~~~~~~----------------~~~ 45 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGK--YR----ST--VT-----------SIEPNVATFILN----------------SEG 45 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--CC----Cc--cC-----------cEeecceEEEee----------------cCC
Confidence 589999999999999999995421 00 00 00 111111111111 001
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhc-CcEEEEEcCCCcce--ehHHHHH----HHHHH--cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVT-DGALVVVDCVSGVC--VQTETVL----RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~-D~ailVvda~~g~~--~qt~~~~----~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
.+..+.++|||||.+|.......++.+ +++|+|+|+..... ..+...| ..... .++|++++.||+|+..
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 367899999999999999999999998 99999999998631 1222222 21222 4789999999999875
No 138
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.33 E-value=6.4e-12 Score=149.17 Aligned_cols=116 Identities=21% Similarity=0.319 Sum_probs=90.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..++|+|+|++|+|||||+++|+.....+....+ |+|.+.......|
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~p---------------GvT~d~~~~~~~~------------------ 320 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTP---------------GVTRDRVSYDAEW------------------ 320 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCC---------------CeeEEEEEEEEEE------------------
Confidence 4689999999999999999999754332222222 3443332333344
Q ss_pred CCCCeEEEEEcCCCCcc--------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVD--------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~d--------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..++||||||+.. |...+..+++.+|++|+|+|+.+|.....+.+++.+...++|+|+|+||+|...
T Consensus 321 --~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 321 --AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred --CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 367899999999763 566777889999999999999999988888888888899999999999999853
No 139
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.32 E-value=6.9e-12 Score=148.18 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=81.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++||+|+|||||.++|.... . ..|+ -.|.|++.....+.|
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~---~--~vgn-----------~pGvTve~k~g~~~~-------------------- 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR---Q--RVGN-----------WAGVTVERKEGQFST-------------------- 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---C--ccCC-----------CCCceEeeEEEEEEc--------------------
Confidence 689999999999999999994321 1 1121 135666555555555
Q ss_pred CCeEEEEEcCCCCcccHH--------HHHH--Hh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSS--------EVTA--AL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~--------~~~~--al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+++.++++||||+.+|.. |... .+ ..+|++++|+|+++... ....+.++.+.++|+++++||+|+.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 378999999999988753 2111 22 36899999999998543 3456778889999999999999986
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 126 ~ 126 (772)
T PRK09554 126 E 126 (772)
T ss_pred h
Confidence 3
No 140
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.32 E-value=6.9e-12 Score=148.93 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=88.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..++|+++|++|+|||||+++|+.....+....+ |.|.......+.|.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~---------------gtT~d~~~~~~~~~----------------- 496 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA---------------GTTRDPVDEIVEID----------------- 496 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCC---------------CCCcCcceeEEEEC-----------------
Confidence 4689999999999999999999765432222223 33433333344443
Q ss_pred CCCCeEEEEEcCCCCc---------ccHHH--HHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 87 NEKGFLINLIDSPGHV---------DFSSE--VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~---------df~~~--~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
+..+.|+||||+. +|... ...+++.+|++++|+|++++.+.|+..++..+...++|+++|+||+|+
T Consensus 497 ---~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL 573 (712)
T PRK09518 497 ---GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDL 573 (712)
T ss_pred ---CCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhc
Confidence 6678899999963 33332 345678999999999999999999999999998899999999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 574 ~~ 575 (712)
T PRK09518 574 MD 575 (712)
T ss_pred CC
Confidence 53
No 141
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.32 E-value=8.3e-12 Score=120.48 Aligned_cols=114 Identities=22% Similarity=0.221 Sum_probs=78.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|+.++|||||+++|+...-... ....++.......+.+. +.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~------------------~~ 47 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED----------------SQHTIGVEFGSKIIRVG------------------GK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----------------CCCceeeeEEEEEEEEC------------------CE
Confidence 799999999999999999965321100 00011111111111111 13
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH---HcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI---AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~ip~iv~iNKiD~~~ 157 (755)
...++|+||||+.+|.......++.+|++++|+|+.++...+....| .... ..++|++++.||+|+..
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 56899999999999998888999999999999999997765554444 2222 34789999999999864
No 142
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.31 E-value=7.3e-12 Score=121.15 Aligned_cols=113 Identities=15% Similarity=0.257 Sum_probs=77.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|+.++|||||+.+++... .. ... ....+.++... ...+ ++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~----------~~~--~~~~~~~~~~~--~~~~------------------~~~ 47 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG--YE----------PQQ--LSTYALTLYKH--NAKF------------------EGK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CC----------CCc--CCceeeEEEEE--EEEE------------------CCE
Confidence 68999999999999999996421 10 000 00001111100 0111 123
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc--CCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE--RIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~--~ip~iv~iNKiD~~ 156 (755)
...++++||||+..|.......++.+|++|+|+|++++...+....| ....+. ++|++++.||+|+.
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 67899999999999999999999999999999999887655554434 333333 68999999999984
No 143
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.31 E-value=1.7e-11 Score=111.73 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=74.3
Q ss_pred EEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCC
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKG 90 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (755)
|+++|.+|+|||||+++|+........... +.|.......+.+ ++
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~---------------~~T~~~~~~~~~~--------------------~~ 46 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIP---------------GTTRDPVYGQFEY--------------------NN 46 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSST---------------TSSSSEEEEEEEE--------------------TT
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccc---------------cceeeeeeeeeee--------------------ce
Confidence 899999999999999999753211111112 2233222222233 36
Q ss_pred eEEEEEcCCCCcc---------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEec
Q psy16810 91 FLINLIDSPGHVD---------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNK 152 (755)
Q Consensus 91 ~~i~lIDtPGh~d---------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNK 152 (755)
..+.|+||||..+ ........++.+|++++|+|+......+...+++.++ .+.|.++++||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 6788999999854 3335666778999999999988855556667777776 88999999998
No 144
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.31 E-value=1.2e-11 Score=120.33 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=70.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
|+|+++|+.|+|||||+++|+....... ...+.|.......+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~-------------------- 44 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA----------------PYPFTTKSLFVGHFDY-------------------- 44 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC----------------CCCCcccceeEEEEcc--------------------
Confidence 6899999999999999999964321000 0011222222122222
Q ss_pred CCeEEEEEcCCCCcccH--------HHHHHHh-hhcCcEEEEEcCCCcce---ehHHHHHHHHHHc--CCceEEEEeccc
Q psy16810 89 KGFLINLIDSPGHVDFS--------SEVTAAL-RVTDGALVVVDCVSGVC---VQTETVLRQAIAE--RIKPVLFMNKMD 154 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~--------~~~~~al-~~~D~ailVvda~~g~~---~qt~~~~~~~~~~--~ip~iv~iNKiD 154 (755)
++..++|+||||+.+.. .....++ ..+|++|+|+|+++... ......+..+... ++|+++++||+|
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~D 124 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKID 124 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccc
Confidence 36799999999985321 1222222 34699999999987432 1112344444444 789999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
...
T Consensus 125 l~~ 127 (168)
T cd01897 125 LLT 127 (168)
T ss_pred cCc
Confidence 853
No 145
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.30 E-value=1.6e-11 Score=125.47 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=82.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
.-+.|+++|++|+|||||++.|+....... .. ...|. +++ +.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~--------~~------~~~g~------i~i-~~----------------- 79 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQN--------IS------DIKGP------ITV-VT----------------- 79 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCc--------cc------ccccc------EEE-Ee-----------------
Confidence 357899999999999999999975422100 00 11121 111 11
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEE-EEeccchh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVL-FMNKMDRA 156 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv-~iNKiD~~ 156 (755)
..+.+++++||||+. ..+..++..+|.+++|+|+..|...++..+|..+...++|.++ |+||+|+.
T Consensus 80 -~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 80 -GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred -cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 136789999999975 6778888999999999999999999999999999999999655 99999985
No 146
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.30 E-value=1.1e-11 Score=121.40 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=77.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.....|+++|+.++|||||+++|... ... . .+...|+.+ ..+.+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~--~~~----------~---~~~t~g~~~----~~~~~----------------- 55 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGE--DID----------T---ISPTLGFQI----KTLEY----------------- 55 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC--CCC----------C---cCCccccce----EEEEE-----------------
Confidence 34578999999999999999999542 000 0 011112211 12223
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh-HH----HHHHHHHHcCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TE----TVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~----~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+++.++++||||+..|.......++.+|++++|+|+.+.-..+ .. .++......++|+++++||+|+..
T Consensus 56 ---~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 56 ---EGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred ---CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 2678999999999999888888899999999999998863211 11 122212235789999999999864
No 147
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.30 E-value=1.7e-11 Score=121.41 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=82.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
..+-.+|+++|..|+|||||+++|... ... .. ....+.+ ...+.+
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~--~~~----------~~---~~t~~~~----~~~~~~---------------- 58 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKND--RLA----------QH---QPTQHPT----SEELAI---------------- 58 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcC--CCc----------cc---CCccccc----eEEEEE----------------
Confidence 345688999999999999999999542 111 00 0011111 222333
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee-hHHHHHHHH----HHcCCceEEEEeccchhhhc
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQA----IAERIKPVLFMNKMDRALLE 159 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~----~~~~ip~iv~iNKiD~~~~~ 159 (755)
++..++++||||+..+.......++.+|++++|+|+++.... .....+... ...++|+++++||+|+..
T Consensus 59 ----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~-- 132 (184)
T smart00178 59 ----GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY-- 132 (184)
T ss_pred ----CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--
Confidence 368899999999999988888899999999999999875322 222223222 225789999999999864
Q ss_pred ccCCHHHHHH
Q psy16810 160 LQLDAEDLYQ 169 (755)
Q Consensus 160 ~~~~~~~~~~ 169 (755)
..+.+++.+
T Consensus 133 -~~~~~~i~~ 141 (184)
T smart00178 133 -AASEDELRY 141 (184)
T ss_pred -CCCHHHHHH
Confidence 234555443
No 148
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=2.7e-11 Score=117.28 Aligned_cols=127 Identities=14% Similarity=0.251 Sum_probs=92.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC-CccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG-IIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
...-||++|.+|+|||||+++|+...+ +-.+..+|.|+ . ...|.+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq---------------~--iNff~~~---------------- 69 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQ---------------L--INFFEVD---------------- 69 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccc---------------e--eEEEEec----------------
Confidence 357899999999999999999977543 22233556543 1 1234442
Q ss_pred cCCCCeEEEEEcCCCCc----------ccHHHHHHHhh---hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEec
Q psy16810 86 KNEKGFLINLIDSPGHV----------DFSSEVTAALR---VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNK 152 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~----------df~~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNK 152 (755)
..+.|||.||+. .+...+...|. ...+++++||+..++.....+.+..+...++|+++++||
T Consensus 70 -----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK 144 (200)
T COG0218 70 -----DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTK 144 (200)
T ss_pred -----CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEc
Confidence 238899999992 23334444443 467899999999999999999999999999999999999
Q ss_pred cchhhhcccCCHHHHHHHHHHHhhh
Q psy16810 153 MDRALLELQLDAEDLYQTFQRIVEN 177 (755)
Q Consensus 153 iD~~~~~~~~~~~~~~~~~~~ii~~ 177 (755)
+|+. ...+..+.+..+.+.
T Consensus 145 ~DKi------~~~~~~k~l~~v~~~ 163 (200)
T COG0218 145 ADKL------KKSERNKQLNKVAEE 163 (200)
T ss_pred cccC------ChhHHHHHHHHHHHH
Confidence 9995 344444455555544
No 149
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.29 E-value=1.2e-11 Score=119.45 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=78.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|++|+|||||+++|+...- .. ...+.++.......+.+. +.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~------------------~~ 47 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--SE--------------QYKSTIGVDFKTKTIEVD------------------GK 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC--------------CCCCceeeEEEEEEEEEC------------------CE
Confidence 689999999999999999964211 00 000111221112222221 12
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH---cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~ip~iv~iNKiD~~~ 157 (755)
...++++||||+..|.......++.+|++++|+|+.+....+....|. .... .++|+++++||+|+..
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 368999999999999999999999999999999998866555444443 2222 3689999999999754
No 150
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.29 E-value=1.6e-11 Score=118.32 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=75.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..++|||||+.+|........ .+. ..-|.++ ..+.+ .
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------~~~------~t~g~~~----~~~~~--------------------~ 43 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------IIV------PTVGFNV----ESFEK--------------------G 43 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------eec------Cccccce----EEEEE--------------------C
Confidence 589999999999999999954211000 000 0112211 12222 3
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh-HHHHHHHH------HHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQA------IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~------~~~~ip~iv~iNKiD~~~ 157 (755)
+..++++||||+.+|.......++.+|++|+|+|+++..... ....+..+ ...++|+++++||+|+..
T Consensus 44 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 44 NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 788999999999999998899999999999999998865321 11112222 124789999999999864
No 151
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.28 E-value=1.4e-11 Score=118.51 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=77.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|+.|+|||||+++++... .. . .-.|+......+.+ .
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~-----~------------~~~t~~~~~~~~~~--------------------~ 41 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VV-----T------------TIPTIGFNVETVEY--------------------K 41 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CC-----C------------CCCCcCcceEEEEE--------------------C
Confidence 48999999999999999996532 10 0 01122222233334 2
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHH----HHHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQ----AIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~----~~~~~ip~iv~iNKiD~~~ 157 (755)
...++++||||+..|.......++.+|++++|+|++.+- ..+....+.. +...+.|++++.||+|+..
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 678999999999999888888889999999999999862 2222233332 3345789999999999864
No 152
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.28 E-value=2e-11 Score=117.62 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=75.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|+.++|||||+.+|.... .. +.. -|+......+.+ .
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~----------~~~-------~t~~~~~~~~~~--------------------~ 41 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VV----------TTI-------PTIGFNVETVTY--------------------K 41 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--Cc----------CcC-------CccCcCeEEEEE--------------------C
Confidence 48999999999999999994311 10 100 022111122333 3
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh-HHHHHH-HHH---HcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLR-QAI---AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~-~~~---~~~ip~iv~iNKiD~~~ 157 (755)
+..++++||||+.+|.......++.+|++|+|+|+++....+ ....|. ... ..++|+++++||+|+..
T Consensus 42 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 42 NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 678999999999999888888999999999999998753222 122222 222 24789999999999864
No 153
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.28 E-value=5.2e-11 Score=114.66 Aligned_cols=114 Identities=25% Similarity=0.289 Sum_probs=79.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-..|+++|++|+|||||+++|+...-.......+ .+... ....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~---------------~~~~~--~~~~~~------------------ 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRNR--IRGIYT------------------ 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCC---------------ceece--EEEEEE------------------
Confidence 4679999999999999999996432111100000 01000 000111
Q ss_pred CCCeEEEEEcCCCCcccH--------HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFS--------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~--------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
..+..+.+|||||+.+.. ......++.+|++++|+|+..........+++++...+.|.++++||+|+.
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 135789999999986543 344556889999999999998866666777777888889999999999986
No 154
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.28 E-value=1.7e-11 Score=118.19 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
++|+++|++|+|||||+++|.... .. . .......|.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~-----------~~------------~--~~~~~v~~~------------------- 37 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNY-----------TL------------A--RKTQAVEFN------------------- 37 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC-----------cc------------C--ccceEEEEC-------------------
Confidence 479999999999999999984210 00 0 011233442
Q ss_pred CCeEEEEEcCCCC----cccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGH----VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh----~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.. ++|||||. .++..++..+++.+|++++|+|++++...++..++.. ..+.|+++++||+|+..
T Consensus 38 -~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 38 -DK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred -CC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 11 36999996 5778888888999999999999998876655444432 34679999999999854
No 155
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.28 E-value=1.6e-11 Score=118.52 Aligned_cols=116 Identities=16% Similarity=0.278 Sum_probs=77.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..++|||||+++|.... ... + ....+..+.....+.+. ....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~--~~~---------~-----~~~t~~~~~~~~~~~~~----------------~~~~ 49 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI--FTK---------D-----YKKTIGVDFLEKQIFLR----------------QSDE 49 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC---------C-----CCCcEEEEEEEEEEEEc----------------CCCC
Confidence 68999999999999999995421 100 0 00011111111111111 0123
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHH---cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
...++++||||+.+|.......++.+|++++|+|+++....+....|..... .++|+++++||+|+..
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 6789999999999999989999999999999999987654444444433222 3789999999999853
No 156
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.28 E-value=1.8e-11 Score=118.30 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-+|+++|..|+|||||+++++.... ...... |+... ...+.+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~----------------t~~~~~~~~~~~~------------------ 46 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDP----------------TIEDSYTKQCEID------------------ 46 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCC----------------CccceEEEEEEEC------------------
Confidence 4899999999999999999976321 100011 11000 0111121
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHH-HHHH----HHcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQA----IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~----~~~~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+.+|.......++.+|++++|+|+++....+...- +... ...++|+++++||+|+..
T Consensus 47 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 47 GQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred CEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 124679999999999999999999999999999999987543222221 1222 234789999999999864
No 157
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.28 E-value=1.4e-11 Score=122.45 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=79.2
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
+...+...|+++|+.|+|||||+++|... ... . + ..|+......+.+
T Consensus 14 ~~~~~~~ki~ilG~~~~GKStLi~~l~~~--~~~-----~--~----------~~T~~~~~~~i~~-------------- 60 (190)
T cd00879 14 GLYNKEAKILFLGLDNAGKTTLLHMLKDD--RLA-----Q--H----------VPTLHPTSEELTI-------------- 60 (190)
T ss_pred hcccCCCEEEEECCCCCCHHHHHHHHhcC--CCc-----c--c----------CCccCcceEEEEE--------------
Confidence 33455678999999999999999998431 111 0 0 0122222233444
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh-HHHHH----HHHHHcCCceEEEEeccchhh
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVL----RQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~----~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+.+....+ ....+ +.....+.|+++++||+|+..
T Consensus 61 ------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 61 ------GNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred ------CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 2678999999999999888888899999999999998642211 12222 222235689999999999853
No 158
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.27 E-value=4.5e-11 Score=117.26 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=78.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+.+.|+++|+.++|||||+.+|+.. ... .. .-|+......+.+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~--~~~----------~~-------~~t~~~~~~~~~~------------------ 56 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLG--EVV----------HT-------SPTIGSNVEEIVY------------------ 56 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCC----------Cc-------CCccccceEEEEE------------------
Confidence 4578999999999999999999531 110 00 1122222233333
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh--HHHHHHHHHH---cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ--TETVLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q--t~~~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
++..+.|+||||+..|.......++.+|++++|+|+++....+ ...+.+.+.. .++|+++++||+|+..
T Consensus 57 --~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 57 --KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred --CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 2678999999999999888889999999999999998763221 1223333222 3589999999999864
No 159
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.27 E-value=3.3e-11 Score=117.42 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=75.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce--EEEEeeeCccccccccCCCccccC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA--ISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+|+++|++++|||||+++|+...- .. .. ..|+.... ..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~--~~----~~------------~~t~~~~~~~~~~~~~------------------ 45 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF--SN----QY------------KATIGADFLTKEVTVD------------------ 45 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--Cc----Cc------------CCccceEEEEEEEEEC------------------
Confidence 689999999999999999965321 10 00 00111111 112221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH--HHH------cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ--AIA------ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~--~~~------~~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+.+|.......++.+|++|+|+|+++....+...-|.. ... .++|+++++||+|+..
T Consensus 46 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 46 DKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred CEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 124678899999999999888889999999999999987653332222322 111 2789999999999963
No 160
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.27 E-value=1.9e-11 Score=117.82 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=78.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|+.++|||||+++|+...-.. +...+.+.+.....+.+. +
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~------------------~ 46 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN----------------QYQATIGIDFLSKTMYLE------------------D 46 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc----------------cCCCceeeeEEEEEEEEC------------------C
Confidence 379999999999999999996532111 011122222222222232 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHH-HHcC--CceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQA-IAER--IKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~-~~~~--ip~iv~iNKiD~~ 156 (755)
....++++||||+..|.......++.+|++++|+|.++....+....| ... ...+ +|+++++||+|..
T Consensus 47 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 47 KTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 246799999999999988888899999999999999886544443333 222 2343 8999999999984
No 161
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.26 E-value=2.6e-11 Score=135.31 Aligned_cols=114 Identities=19% Similarity=0.277 Sum_probs=82.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-.+|+++|++|+|||||+++|+.....+....+|+ |.+.....+.+
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt---------------Trd~~~~~i~~------------------- 248 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT---------------TRDVVEGDFEL------------------- 248 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc---------------EEEEEEEEEEE-------------------
Confidence 35899999999999999999976544333223333 22222233344
Q ss_pred CCCeEEEEEcCCCCcccHHH--------HHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSE--------VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~--------~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+++.++++||||+.++... ....++.+|++++|+|++.+...+.. .+..+...++|+++|+||+|+..
T Consensus 249 -~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 249 -NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred -CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 3778999999999765432 24577889999999999987765554 55566667899999999999854
No 162
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.26 E-value=2.5e-11 Score=122.24 Aligned_cols=117 Identities=22% Similarity=0.222 Sum_probs=73.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
..+.+|+|+|++|+|||||+++|+...-.... .. +.|+......+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~-~~---------------~~t~~~~~~~~~~~---------------- 86 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED-QL---------------FATLDPTTRRLRLP---------------- 86 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC-cc---------------ceeccceeEEEEec----------------
Confidence 34689999999999999999999653211110 00 11222222233332
Q ss_pred cCCCCeEEEEEcCCCCccc-H-------HHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHH---HcCCceEEEEecc
Q psy16810 86 KNEKGFLINLIDSPGHVDF-S-------SEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAI---AERIKPVLFMNKM 153 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df-~-------~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~---~~~ip~iv~iNKi 153 (755)
+.+.++|+||||+.+. . ..+...+..+|++++|+|++++...+... +..... ..++|+++|+||+
T Consensus 87 ---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~ 163 (204)
T cd01878 87 ---DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKI 163 (204)
T ss_pred ---CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcc
Confidence 2348999999998432 1 12223456899999999999875444332 222222 2468999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 164 Dl~~ 167 (204)
T cd01878 164 DLLD 167 (204)
T ss_pred ccCC
Confidence 9854
No 163
>KOG0052|consensus
Probab=99.25 E-value=1.3e-12 Score=137.43 Aligned_cols=132 Identities=33% Similarity=0.421 Sum_probs=105.8
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccccc------------Cc---ccccCCchhhhhhccccccceEEE
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKA------------GE---TRFTDTRKDEQERCITIKSTAISM 66 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~------------g~---~~~~d~~~~E~~rgiTi~~~~~~~ 66 (755)
|+.....+||+++||+|+||||++. +.+|.++.+.. |+ ...+|....|++||++|..+.
T Consensus 1 ~~~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l--- 74 (391)
T KOG0052|consen 1 MGKEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIAL--- 74 (391)
T ss_pred CCCcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEe---
Confidence 4555667999999999999999998 67787775411 11 235899999999998865433
Q ss_pred EeeeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-------ceehHHHHHHHH
Q psy16810 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-------VCVQTETVLRQA 139 (755)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~ 139 (755)
|. .....+.+++||.|||.||..+|..+.+.+|.|+++|.+..| ...||+++..++
T Consensus 75 -~~----------------~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla 137 (391)
T KOG0052|consen 75 -WK----------------FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 137 (391)
T ss_pred -ec----------------ccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhh
Confidence 32 122478899999999999999999999999999999988332 247999999999
Q ss_pred HHcCC-ceEEEEeccchh
Q psy16810 140 IAERI-KPVLFMNKMDRA 156 (755)
Q Consensus 140 ~~~~i-p~iv~iNKiD~~ 156 (755)
..+++ ++++-+||||..
T Consensus 138 ~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 138 FTLGVKQLIVGVNKMDST 155 (391)
T ss_pred ccccceeeeEEeeccccc
Confidence 99987 778899999985
No 164
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.25 E-value=3.4e-11 Score=117.31 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=76.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..++|||||+++|... .. .. ...|+......+.+ +
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~----~~------------~~~t~g~~~~~~~~--------------------~ 41 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IP----KK------------VAPTVGFTPTKLRL--------------------D 41 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CC----cc------------ccCcccceEEEEEE--------------------C
Confidence 5899999999999999998531 11 00 01122111223333 3
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh-HHHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++.++++||||+.+|.......++.+|++|+|+|+++.-..+ ....+..... .++|+++|+||+|+..
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 42 KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 688999999999999988899999999999999998753222 2233333322 4789999999999865
No 165
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.24 E-value=3.5e-11 Score=120.63 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=75.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccc-cceEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIK-STAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.|+++|+.|+|||||+++++... .... +. -|+. .....+.+. +
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~~------~~----------~t~~~~~~~~~~~~------------------~ 44 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEPK------YR----------RTVEEMHRKEYEVG------------------G 44 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcc------CC----------CchhhheeEEEEEC------------------C
Confidence 47999999999999999996521 1100 00 0111 111122221 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHH----HHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQA----IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~----~~~~ip~iv~iNKiD~~~ 157 (755)
....++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+ ...++|+++++||+|+..
T Consensus 45 ~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 45 VSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 236899999999999988778889999999999999886443322222 222 225789999999999864
No 166
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.24 E-value=7.1e-11 Score=114.91 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=78.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|..++|||||+++++... .. +. ....+++......+.+.
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~--f~----------~~----~~~t~~~~~~~~~~~~~----------------- 48 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDS--FN----------PS----FISTIGIDFKIRTIELD----------------- 48 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCc--CC----------cc----cccCccceEEEEEEEEC-----------------
Confidence 45789999999999999999996421 11 00 00011111111122222
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH---cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+.+|.......++.+|++|+|+|++++..-+...-|. .... .++|++++.||+|+..
T Consensus 49 -~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 49 -GKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred -CEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 12468899999999999888888899999999999998765433322333 2222 3679999999999964
No 167
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.24 E-value=3.6e-11 Score=114.51 Aligned_cols=111 Identities=22% Similarity=0.185 Sum_probs=80.1
Q ss_pred EEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCCeE
Q psy16810 13 VIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFL 92 (755)
Q Consensus 13 iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (755)
++|+.|+|||||+++|+....... ...++.|.........+. ....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~-------------------~~~~ 46 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV---------------SPVPGTTTDPVEYVWELG-------------------PLGP 46 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc---------------CCCCCcEECCeEEEEEec-------------------CCCc
Confidence 589999999999999965322111 111223333322232221 2678
Q ss_pred EEEEcCCCCcccH-------HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 93 INLIDSPGHVDFS-------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 93 i~lIDtPGh~df~-------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+.++||||+.++. ......++.+|++++|+|+..+.......++......++|.++++||+|+..
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 9999999998765 3455688999999999999998877777666777788999999999999854
No 168
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.24 E-value=3.3e-11 Score=115.10 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=76.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|++++|||||+++|+....... ..+..+.......+.+. +.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~------------------~~ 47 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----------------YKSTIGVDFKSKTIEID------------------GK 47 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----------------cCCceeeeeEEEEEEEC------------------CE
Confidence 689999999999999999964321110 00011111111222221 13
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---CCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---RIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~iv~iNKiD~~ 156 (755)
...++++||||+..|.......++.+|++++|+|+.+....+....| ...... ++|.++++||+|..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 57899999999999999999999999999999999875433332223 334443 48999999999985
No 169
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.23 E-value=3.1e-11 Score=117.62 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=78.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.-+|+++|++|+|||||+++++...-... .. ...|.+.. ...+.+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~--~~------------~t~~~~~~--~~~~~~~------------------ 49 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HD------------LTIGVEFG--ARMITID------------------ 49 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CC------------CccceeEE--EEEEEEC------------------
Confidence 46899999999999999999954211000 00 00112111 1122221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HHH---cCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AIA---ERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~iv~iNKiD~~ 156 (755)
+....++++||||+..|.......++.+|++|+|+|++.....+....|.. ..+ .++|++++.||+|+.
T Consensus 50 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 50 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 124689999999999998888889999999999999997555444444432 223 368999999999986
No 170
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.23 E-value=4e-11 Score=134.65 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=80.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|++|+|||||+++|+.....+.....| .|.+.....+.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~-------------------- 260 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAG---------------TTRDVIEEHINL-------------------- 260 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC---------------cccccEEEEEEE--------------------
Confidence 589999999999999999997543322222223 233322233334
Q ss_pred CCeEEEEEcCCCCcccHHH--------HHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSE--------VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~--------~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+++.++++||||+.++... +...++.+|++++|+|++.+...+....|.. ..+.|+++|+||+|+..
T Consensus 261 ~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 261 DGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 3678999999999876432 3346788999999999998876666666655 45789999999999853
No 171
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.22 E-value=4.1e-11 Score=118.05 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
++|+++|++|+|||||+.+++...- ... +..... ......+.+. +
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~-------~~~t~~---------~~~~~~~~~~------------------~ 46 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VES-------YYPTIE---------NTFSKIIRYK------------------G 46 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccc-------cCcchh---------hhEEEEEEEC------------------C
Confidence 7899999999999999999974221 100 000000 0001111221 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHH-HHHHH----HcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
.++.+.++||||+.+|.......+..+|++++|+|.+++...+.... |.... ..++|+++++||+|+..
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 47 QDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 25678999999999999888889999999999999998765544332 23332 24679999999999853
No 172
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.22 E-value=3.9e-11 Score=118.75 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+++|+.|+|||||++++++... ....+ ..|++.. ...+.+. ++
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~------------~~~~~---t~~~~~~--~~~~~~~-----------------~~ 49 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF------------VNTVP---TKGFNTE--KIKVSLG-----------------NS 49 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc------------CCcCC---cccccee--EEEeecc-----------------CC
Confidence 3589999999999999999965221 11000 0122111 1111110 12
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-----HHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-----ETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-----~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.+..++++||||+..|.......++.+|++++|+|+++.-..+. .+++......++|+++++||+|+..
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 36789999999999998878888899999999999988632222 2233333446789999999999853
No 173
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.21 E-value=9.4e-11 Score=111.99 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=75.1
Q ss_pred EEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCC
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKG 90 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (755)
|+++|+.|+|||||+++|....- . .+..+ |+......+.+ ++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~--~---------~~~~~-------t~~~~~~~~~~--------------------~~ 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF--S---------EDTIP-------TVGFNMRKVTK--------------------GN 43 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC--C---------cCccC-------CCCcceEEEEE--------------------CC
Confidence 79999999999999999943210 0 00000 11111122222 25
Q ss_pred eEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-ehHHHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 91 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-VQTETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-~qt~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
..+.++||||+..|.......++.+|++++|+|+..... .+....+.... ..++|+++++||+|...
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 789999999999999999999999999999999986432 22233333332 25789999999999854
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.21 E-value=9.5e-11 Score=117.04 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=76.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
...++|+++|+.|+|||||+++|+.... +.. +.. ..|.|.. ..+-
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~-------~~~------~~~~t~~-----~~~~---------------- 66 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN-LAR-------TSK------TPGRTQL-----INFF---------------- 66 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc-------ccC------CCCceeE-----EEEE----------------
Confidence 4578999999999999999999965211 000 000 0122221 1111
Q ss_pred cCCCCeEEEEEcCCCCc----------ccHHHHHHHhhh---cCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEec
Q psy16810 86 KNEKGFLINLIDSPGHV----------DFSSEVTAALRV---TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNK 152 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~----------df~~~~~~al~~---~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNK 152 (755)
. .+..++||||||+. +|...+...++. ++++++|+|+..+.......+++.+...++|+++++||
T Consensus 67 -~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK 144 (196)
T PRK00454 67 -E-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTK 144 (196)
T ss_pred -e-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEEC
Confidence 0 13579999999963 233333444444 46788899998887776667777788889999999999
Q ss_pred cchhh
Q psy16810 153 MDRAL 157 (755)
Q Consensus 153 iD~~~ 157 (755)
+|...
T Consensus 145 ~Dl~~ 149 (196)
T PRK00454 145 ADKLK 149 (196)
T ss_pred cccCC
Confidence 99853
No 175
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.20 E-value=1.1e-10 Score=113.40 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=75.5
Q ss_pred EEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCC
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKG 90 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (755)
|+++|..|+|||||+.+|....- .. +.. -|+......+.+ .+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~----------~~~-------pt~g~~~~~i~~--------------------~~ 43 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LE----------SVV-------PTTGFNSVAIPT--------------------QD 43 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cc----------ccc-------ccCCcceEEEee--------------------CC
Confidence 78999999999999999954210 00 000 111111122333 36
Q ss_pred eEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHH--HcCCceEEEEeccchhh
Q psy16810 91 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAI--AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~--~~~ip~iv~iNKiD~~~ 157 (755)
..+.++||||+.+|.......++.+|++|+|+|+++...... +..+..+. ..++|+++|.||+|+..
T Consensus 44 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 44 AIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred eEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 889999999999999888899999999999999987543222 22223232 25789999999999864
No 176
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.20 E-value=4.2e-11 Score=115.46 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=76.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|+.++|||||+++|+...-... .+...|.+.. ...+.+. +.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~--~~~~~~~------------------~~ 47 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD--------------LAATIGVDFK--VKTLTVD------------------GK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--------------cCCcccceEE--EEEEEEC------------------CE
Confidence 689999999999999999964211100 0011111111 1112221 13
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HH----HHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QA----IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~----~~~~ip~iv~iNKiD~~~ 157 (755)
...+.++||||+.+|.......++.+|++++|+|+++....+....|. .+ ...++|+++++||+|+..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 568999999999999888888899999999999998765444433332 22 235689999999999963
No 177
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.20 E-value=5.6e-11 Score=115.55 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=76.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|+.|+|||||+++|+... ...... ...+ ..+ ....+ ...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~~~~---~~~~--------~~~-----~~~~~------------------~~~ 45 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPENVP---RVLP--------EIT-----IPADV------------------TPE 45 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCccCC---Cccc--------ceE-----eeeee------------------cCC
Confidence 68999999999999999996521 110000 0000 011 11111 124
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
.+.++++||||+.++...+...++.+|++++|+|+++....+.. ..| ..+.. .++|++++.||+|+..
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 67899999999998888888889999999999999886655542 234 33332 3689999999999864
No 178
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.20 E-value=7.6e-11 Score=114.40 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=76.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+.+|+++|..|+|||||+++++... .. .. ....+++......+.+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~--~~----------~~----~~~t~~~~~~~~~~~~~------------------ 47 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDT--YT----------ES----YISTIGVDFKIRTIELD------------------ 47 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CC----------CC----CCCccceeEEEEEEEEC------------------
Confidence 4689999999999999999996421 11 00 00011111111122221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+.+|.......++.+|++|+|+|+++...-.....| ..... .++|++++.||+|+..
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 48 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 1246889999999999998888899999999999999875432222222 22222 3579999999999854
No 179
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.20 E-value=5.6e-11 Score=115.29 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=73.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..|+|||||+.+++.. ... +. +..... +... ..+.+. +.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~--~~~----~~--~~~t~~-------~~~~--~~~~~~------------------~~ 45 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK--RFI----GE--YDPNLE-------SLYS--RQVTID------------------GE 45 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhC--ccc----cc--cCCChH-------Hhce--EEEEEC------------------CE
Confidence 4899999999999999999641 111 00 000000 1111 111111 13
Q ss_pred CeEEEEEcCCCCcc-cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH-----HcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVD-FSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI-----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~d-f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~-----~~~ip~iv~iNKiD~~~ 157 (755)
...++++||||+.. +.......++.+|++|+|+|+++....+....| ..+. ..++|+++|.||+|+..
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 46789999999985 456678889999999999999987544433333 2222 23789999999999854
No 180
>PRK04213 GTP-binding protein; Provisional
Probab=99.19 E-value=7.8e-11 Score=118.35 Aligned_cols=112 Identities=23% Similarity=0.223 Sum_probs=74.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
....+|+++|+.|+|||||+++|.... .. .+...|.|.... .+.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~--~~--------------~~~~~~~t~~~~--~~~~----------------- 51 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKK--VR--------------VGKRPGVTRKPN--HYDW----------------- 51 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--Cc--------------cCCCCceeeCce--EEee-----------------
Confidence 345789999999999999999995321 00 011224444322 2222
Q ss_pred cCCCCeEEEEEcCCCCcc-----------cHHHH----HHHhhhcCcEEEEEcCCCc-----------ceehHHHHHHHH
Q psy16810 86 KNEKGFLINLIDSPGHVD-----------FSSEV----TAALRVTDGALVVVDCVSG-----------VCVQTETVLRQA 139 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~d-----------f~~~~----~~al~~~D~ailVvda~~g-----------~~~qt~~~~~~~ 139 (755)
+ .++++||||+.+ |...+ .+++..+|++++|+|+... ...++++++..+
T Consensus 52 ----~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (201)
T PRK04213 52 ----G-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL 126 (201)
T ss_pred ----c-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH
Confidence 1 589999999632 22222 1244567899999998653 223556778888
Q ss_pred HHcCCceEEEEeccchhh
Q psy16810 140 IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 140 ~~~~ip~iv~iNKiD~~~ 157 (755)
...++|+++++||+|+..
T Consensus 127 ~~~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 127 RELGIPPIVAVNKMDKIK 144 (201)
T ss_pred HHcCCCeEEEEECccccC
Confidence 888999999999999854
No 181
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.19 E-value=6.5e-11 Score=114.32 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=75.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|+.++|||||+++|+...- . +. .....|.+... ..+.+. ..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~--~----------~~--~~~t~~~~~~~--~~v~~~------------------~~ 48 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEF--S----------EN--QESTIGAAFLT--QTVNLD------------------DT 48 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--C----------CC--CCCccceeEEE--EEEEEC------------------CE
Confidence 689999999999999999964321 0 00 00011111111 111221 23
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh-HHHHHHHHHHc---CCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAE---RIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~~~---~ip~iv~iNKiD~~ 156 (755)
+..++++||||+..|.......++.+|++++|+|++..-..+ ....+..+... ++|+++++||+|+.
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 578999999999999888888899999999999998654322 22333333333 47899999999986
No 182
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.19 E-value=7.8e-11 Score=114.06 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=74.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|++++|||||+++|+...- . . +....++.......+.+ ++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~--~----------~----~~~~t~~~~~~~~~~~~------------------~~~ 47 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF--V----------S----KYLPTIGIDYGVKKVSV------------------RNK 47 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--C----------C----CCCCccceeEEEEEEEE------------------CCe
Confidence 689999999999999999964211 0 0 00000111111111111 123
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH--------cCCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA--------ERIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~--------~~ip~iv~iNKiD~~ 156 (755)
...++++||||+.+|.......++.+|++|+|+|.++....+...-|. .+.+ .++|++++.||.|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 48 EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 678999999999999888888889999999999998754433333332 2221 357999999999985
No 183
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.19 E-value=1.5e-10 Score=111.26 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=76.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..|+|||||+++|+...-... . . -|+........+.. .+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~--~--------------~--~~~~~~~~~~~~~~----------------~~~ 47 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK--H--------------E--STTQASFFQKTVNI----------------GGK 47 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--c--------------C--CccceeEEEEEEEE----------------CCE
Confidence 799999999999999999975321110 0 0 01111111111110 012
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HH---HcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AI---AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~---~~~ip~iv~iNKiD~~~ 157 (755)
...++++||||+..|.......++.+|++++|+|.+++...+....|.. .. ..++|+++++||+|+..
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 4679999999999888888888899999999999988765444333322 22 23689999999999863
No 184
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.18 E-value=1.9e-10 Score=112.15 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=76.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|..++|||||+.+++.. .... +....++.......+.+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~------------------ 49 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN--KFDT--------------QLFHTIGVEFLNKDLEV------------------ 49 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcC--CCCc--------------CcCCceeeEEEEEEEEE------------------
Confidence 4578999999999999999999631 1110 00001111111111222
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HH-------HcCCceEEEEeccchh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AI-------AERIKPVLFMNKMDRA 156 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~-------~~~ip~iv~iNKiD~~ 156 (755)
++....+.|+||||+..|.......++.+|++++|+|.++....+...-|.. .. ..++|++++.||+|+.
T Consensus 50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 50 DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 1235678899999999999888889999999999999887654333333321 11 1357999999999985
No 185
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.18 E-value=5e-11 Score=112.54 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=68.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|++|+|||||+++|.... .. . .-| ....|.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~----------~~----~------~~t-----~~~~~~-------------------- 36 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE----------IL----Y------KKT-----QAVEYN-------------------- 36 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc----------cc----c------ccc-----eeEEEc--------------------
Confidence 79999999999999999994311 00 0 001 233342
Q ss_pred CeEEEEEcCCCCc----ccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHV----DFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~----df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
. .+|||||.. .+...+..+++.+|++++|+|+.++...+....+. ..+.|.++++||+|+..
T Consensus 37 ~---~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~---~~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 37 D---GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFAS---IFVKPVIGLVTKIDLAE 102 (142)
T ss_pred C---eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHH---hccCCeEEEEEeeccCC
Confidence 2 689999983 34455556789999999999999988776644332 23459999999999853
No 186
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.18 E-value=9.1e-11 Score=113.51 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=74.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.|+++|++|+|||||+++|+... ....... |+... ...+.+ ++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~------------------~~ 45 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH--FVDDYDP----------------TIEDSYRKQIEI------------------DG 45 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCcccCC----------------chhhhEEEEEEE------------------CC
Confidence 58999999999999999997532 1100000 11100 011111 11
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-----HHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-----RQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~ip~iv~iNKiD~~~ 157 (755)
....++++||||+.+|.......++.+|++++|+|+......+...-| +.....++|++++.||+|+..
T Consensus 46 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 46 EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 357889999999999999888899999999999999875332222222 212223689999999999853
No 187
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.17 E-value=1.1e-10 Score=114.20 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=78.2
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
..+...|+++|+.|+|||||+++|.... .. .. ....|+++ ..+.+
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~--~~----------~~---~~t~g~~~----~~i~~---------------- 55 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASED--IS----------HI---TPTQGFNI----KTVQS---------------- 55 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCC--Cc----------cc---CCCCCcce----EEEEE----------------
Confidence 3456789999999999999999994321 00 00 00112222 12233
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-ehHHH----HHHHHHHcCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-VQTET----VLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-~qt~~----~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.+..++++||||+..|...+...++.+|++++|+|+.+... .+... ++......++|+++++||+|+..
T Consensus 56 ----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 56 ----DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred ----CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 26789999999999998888888999999999999986321 11222 22223345789999999999854
No 188
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.16 E-value=1.3e-10 Score=126.21 Aligned_cols=115 Identities=25% Similarity=0.290 Sum_probs=74.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
....|+++|++|+|||||+++|+... .+.....+ .|.......+.+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~---------------tT~d~~~~~i~~~----------------- 234 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLF---------------ATLDPTTRRLDLP----------------- 234 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCc---------------cccCCEEEEEEeC-----------------
Confidence 45789999999999999999996532 22111222 2333323333442
Q ss_pred CCCCeEEEEEcCCCCc-cc-------HHHHHHHhhhcCcEEEEEcCCCcceehHH----HHHHHHHHcCCceEEEEeccc
Q psy16810 87 NEKGFLINLIDSPGHV-DF-------SSEVTAALRVTDGALVVVDCVSGVCVQTE----TVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~-df-------~~~~~~al~~~D~ailVvda~~g~~~qt~----~~~~~~~~~~ip~iv~iNKiD 154 (755)
++..+.|+||||+. +. ...+...++.+|++++|+|+++....+.. .++..+...++|+++|+||+|
T Consensus 235 --~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~D 312 (351)
T TIGR03156 235 --DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKID 312 (351)
T ss_pred --CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeec
Confidence 35689999999982 21 12233457889999999999876543322 223333333689999999999
Q ss_pred hh
Q psy16810 155 RA 156 (755)
Q Consensus 155 ~~ 156 (755)
+.
T Consensus 313 l~ 314 (351)
T TIGR03156 313 LL 314 (351)
T ss_pred CC
Confidence 85
No 189
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.16 E-value=9.2e-11 Score=114.10 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=77.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..|+|||||+++++... .. +. ...|+........+. .++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~----------~~------~~~t~~~~~~~~~~~----------------~~~~ 47 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FE----------KK------YVATLGVEVHPLDFH----------------TNRG 47 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CC----------CC------CCCceeeEEEEEEEE----------------ECCE
Confidence 68999999999999999996421 11 00 001222111222222 0123
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc--CCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
...+.++||||+.+|.......++.+|++|+|+|.+++...+....| ..+... ++|++++.||+|+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~ 118 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD 118 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc
Confidence 57899999999999887777788899999999999987655544333 333222 689999999999863
No 190
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.16 E-value=1.7e-10 Score=112.05 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=75.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.|+++|..|+|||||+++++.. .... .+.. |+... ...+.+. .
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~--~f~~------~~~~----------t~~~~~~~~~~~~------------------~ 46 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG--TFRE------SYIP----------TIEDTYRQVISCS------------------K 46 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCC------CcCC----------cchheEEEEEEEC------------------C
Confidence 5899999999999999999642 1110 0000 11000 0011111 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH------cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA------ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~------~~ip~iv~iNKiD~~~ 157 (755)
....++++||||+.+|......+++.+|++|+|+|.+....... ...|..... .++|++++.||+|+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 35789999999999998888888999999999999987654432 333343433 4689999999999854
No 191
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.16 E-value=1.7e-10 Score=115.90 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=75.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhcccccc--ceEEEEeeeCccccccccCCCccccC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKS--TAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+|+++|..++|||||+.+|+.. ... ..+ .-|+.. ....+.+. .
T Consensus 2 KivivG~~~vGKTsli~~l~~~--~~~----------~~~------~~t~~~d~~~~~v~~~-----------------~ 46 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHG--IFS----------QHY------KATIGVDFALKVIEWD-----------------P 46 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCC----------CCC------CCceeEEEEEEEEEEC-----------------C
Confidence 6899999999999999999642 111 000 011111 11111111 0
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HH-------HcCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AI-------AERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~-------~~~ip~iv~iNKiD~~ 156 (755)
+..+.++|+||||+..|.......++.+|++|+|+|.+....-+....|.. +. ..++|++++.||+|+.
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 246789999999999998888889999999999999987554443333321 11 2467999999999985
No 192
>PTZ00369 Ras-like protein; Provisional
Probab=99.16 E-value=1.2e-10 Score=115.79 Aligned_cols=114 Identities=21% Similarity=0.312 Sum_probs=76.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCcccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..+|+++|..|+|||||+.+++... ... .+. .|+... ...+.++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~--~~~------~~~----------~t~~~~~~~~~~~~----------------- 49 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNH--FID------EYD----------PTIEDSYRKQCVID----------------- 49 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCc------CcC----------CchhhEEEEEEEEC-----------------
Confidence 4689999999999999999996521 110 000 011000 0111111
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH----HcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
...+.++++||||+.+|.......++.+|++++|+|+++...-+....| .... ..++|++++.||+|+..
T Consensus 50 -~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 50 -EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred -CEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1356899999999999999888999999999999999876542222222 2222 23779999999999853
No 193
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.15 E-value=9.8e-11 Score=112.99 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=75.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|.+|+|||||+.+|++.. ......+++ .+.+ .....+ ++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~--~~~~-------------~~~~~~------------------~~~ 46 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTK--ADSY-------------RKKVVL------------------DGE 46 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CccccCCcc--hhhE-------------EEEEEE------------------CCE
Confidence 79999999999999999997432 111011100 0100 001111 113
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-----ehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-----VQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-----~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
...+.++||||+.+|......+++.+|++++|+|....-. ......++.....++|+++++||+|+..
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 5789999999999999999999999999999999876432 1122222222235799999999999854
No 194
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.15 E-value=1.4e-10 Score=112.54 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=77.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|+.++|||||+++|+.. ... ...+. .-|..+. ...+.+ ++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~----------~~~~~--t~~~~~~--~~~~~~------------------~~ 48 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFM----------ADCPH--TIGVEFG--TRIIEV------------------NG 48 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCC----------CCCCc--ccceeEE--EEEEEE------------------CC
Confidence 58999999999999999999542 111 10000 0011111 011111 11
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH---cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~ip~iv~iNKiD~~~ 157 (755)
..+.++++||||+..|.......++.+|++|+|+|.++...-+....|. .... .+.|++++.||+|+..
T Consensus 49 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 3568899999999999998889999999999999999865444443332 2222 3578999999999864
No 195
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.15 E-value=1.9e-10 Score=110.71 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=73.6
Q ss_pred EEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCC
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKG 90 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (755)
|+++|..|+|||||+++|.... .. ... ...|+++ ..+.+. ..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~--~~----------~~~---~t~~~~~----~~~~~~-------------------~~ 43 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE--LV----------TTI---PTVGFNV----EMLQLE-------------------KH 43 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--cc----------ccc---CccCcce----EEEEeC-------------------Cc
Confidence 7899999999999999995421 10 000 0111211 112221 35
Q ss_pred eEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee-hHHHHHHHH----HHcCCceEEEEeccchhh
Q psy16810 91 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQA----IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~----~~~~ip~iv~iNKiD~~~ 157 (755)
+.++++||||+..|.......++.+|++|+|+|+.+.... .....+... ...++|+++++||+|+..
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 7899999999999988888889999999999999876421 111122222 225789999999999853
No 196
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.15 E-value=1.8e-10 Score=115.57 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=77.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+...+|+++|..|+|||||+.+|+... .. +.+ ...+++......+.+.
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~--~~----------~~~----~~t~~~~~~~~~~~~~---------------- 51 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNT--FS----------GSY----ITTIGVDFKIRTVEIN---------------- 51 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC--CC----------CCc----CccccceeEEEEEEEC----------------
Confidence 356799999999999999999995421 10 000 0001111111122221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+..|.......++.+|++++|+|+++.-..+....| ..... ..+|+++++||+|+..
T Consensus 52 --~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 52 --GERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred --CEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 1246789999999999998888899999999999999876543333333 22222 2479999999999853
No 197
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.15 E-value=1.8e-10 Score=115.63 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=77.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc--eEEEEeeeCccccccccCCCccccC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST--AISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.|+++|..|+|||||+.++... ... +.+ ..|+... ...+.++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~--~f~----------~~~------~~Ti~~~~~~~~i~~~------------------ 45 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDD--TFC----------EAC------KSGVGVDFKIKTVELR------------------ 45 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhC--CCC----------CcC------CCcceeEEEEEEEEEC------------------
Confidence 4889999999999999999542 111 100 0122111 1112221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HHH---cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++++||+|+..|.......++.+|++|+|+|.++.-.-+....|.. ... .++|++++.||+|+..
T Consensus 46 ~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 46 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred CEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 135789999999999999888899999999999999998765555444433 222 3579999999999853
No 198
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=124.53 Aligned_cols=113 Identities=21% Similarity=0.333 Sum_probs=89.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-+++|+|.+|+|||||+++|+....+|...-+|+|| |.. -..+..
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTR--Dvi-------------ee~i~i-------------------- 262 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTR--DVI-------------EEDINL-------------------- 262 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCcc--ceE-------------EEEEEE--------------------
Confidence 479999999999999999999999988887889876 211 122222
Q ss_pred CCeEEEEEcCCCCcccHH--------HHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSS--------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~--------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+++.+.++||.|..+=.. ....++..||.+++|+|++.+...+....+. +...+.|+++++||.|+..
T Consensus 263 ~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 263 NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVS 338 (454)
T ss_pred CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccc
Confidence 499999999999964322 3344778999999999999987777766665 5667789999999999975
No 199
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.14 E-value=2.1e-10 Score=111.84 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=75.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.++|||||+.+|... ... ...+ .-|.++ ..+.+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~--~~~----------~~~~---t~g~~~----~~~~~------------------ 50 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLG--QSV----------TTIP---TVGFNV----ETVTY------------------ 50 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccC--CCc----------cccC---Ccccce----EEEEE------------------
Confidence 3468999999999999999999431 110 0000 011211 11222
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee-hHHHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
.+..++++||||+..|.......++.+|++|+|+|+++.... .....|.... ..++|++++.||+|+..
T Consensus 51 --~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 51 --KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred --CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 368899999999999988788889999999999999874321 2222333222 23589999999999853
No 200
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.13 E-value=5.4e-10 Score=122.73 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=76.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+-.|+|+|.+|+|||||+++|....- +....+++ |.......+.+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~T---------------T~~p~~Giv~~~------------------ 204 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFT---------------TLVPNLGVVRVD------------------ 204 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCC---------------ccCcEEEEEEeC------------------
Confidence 45799999999999999999964322 11112332 223233333332
Q ss_pred CCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCC----cceehHHHHHHHHHHc-----CCceEEEEe
Q psy16810 88 EKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVS----GVCVQTETVLRQAIAE-----RIKPVLFMN 151 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~----g~~~qt~~~~~~~~~~-----~ip~iv~iN 151 (755)
+...|.|+||||..+ +...+.+.+..+|++++|||+.. ....+...+++++..+ +.|.++++|
T Consensus 205 -~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN 283 (390)
T PRK12298 205 -DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFN 283 (390)
T ss_pred -CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence 235699999999864 44566778899999999999872 2222334444555443 589999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|+|+..
T Consensus 284 KiDl~~ 289 (390)
T PRK12298 284 KIDLLD 289 (390)
T ss_pred CCccCC
Confidence 999853
No 201
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.13 E-value=2.4e-10 Score=110.79 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=76.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|.+++|||||+++|+...-... . ...++.......+.+.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~-----~~t~~~~~~~~~~~~~------------------ 48 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD-----------S-----KSTIGVEFATRSIQID------------------ 48 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------C-----CCccceEEEEEEEEEC------------------
Confidence 35899999999999999999954211000 0 0111111111222221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+..|.......++.+|++|+|+|+++....+...-| ..+.+ .++|++++.||.|+..
T Consensus 49 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 49 GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred CEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 1246789999999999888888889999999999999865443332223 22222 2589999999999854
No 202
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.13 E-value=2.4e-10 Score=111.53 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=73.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..++|||||+.+|... ... .. ..|+......+.+ +
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~~----------~~-------~~T~~~~~~~~~~--------------------~ 41 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EFM----------QP-------IPTIGFNVETVEY--------------------K 41 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CCC----------Cc-------CCcCceeEEEEEE--------------------C
Confidence 4789999999999999999542 110 00 0111111112233 3
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee-hHHHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
+..++++||||+.+|.......++.+|++++|+|+++.-.. .....+.... ..+.|++++.||+|+..
T Consensus 42 ~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 42 NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 68999999999999988888899999999999999874211 1122222222 22479999999999853
No 203
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.13 E-value=2e-10 Score=114.99 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=71.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..|+|||||+.+++.. ..... +.+ .++.......+.+. +.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~--~f~~~---------~~p-----t~~~~~~~~~i~~~------------------~~ 47 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQ--EFPEE---------YIP-----TEHRRLYRPAVVLS------------------GR 47 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcC--CCCcc---------cCC-----ccccccceeEEEEC------------------CE
Confidence 6899999999999999999642 11100 000 00001001122232 12
Q ss_pred CeEEEEEcCCCCcccH----HH----HHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH------HcCCceEEEEeccc
Q psy16810 90 GFLINLIDSPGHVDFS----SE----VTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI------AERIKPVLFMNKMD 154 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~----~~----~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~------~~~ip~iv~iNKiD 154 (755)
.+.++|+||||+.+|. .+ ...+++.+|++|+|+|+++...-+....| .... ..++|++++.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 4788999999987652 11 34568899999999999886544433323 2222 24689999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 128 l~~ 130 (198)
T cd04142 128 QQR 130 (198)
T ss_pred ccc
Confidence 954
No 204
>PLN03118 Rab family protein; Provisional
Probab=99.13 E-value=2.8e-10 Score=115.35 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=78.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+|+|+.|+|||||+.+|+... ... . ....+.......+.+.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~--~-------------~~t~~~~~~~~~~~~~------------------ 58 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED--L-------------APTIGVDFKIKQLTVG------------------ 58 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC--c-------------CCCceeEEEEEEEEEC------------------
Confidence 4689999999999999999996531 110 0 0001111111122221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHH-H----HcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQA-I----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~-~----~~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++|+|+|+++....+.. ..|... . ..++|.+++.||+|+..
T Consensus 59 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 59 GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1357899999999999999889999999999999999876544433 234332 2 13578999999999854
No 205
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.13 E-value=2e-10 Score=111.77 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=76.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+|+++|.+|+|||||+++++... ... .+.+ |+... ...+.+. +
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~--~~~---------~~~~-------t~~~~~~~~~~~~------------------~ 46 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV--FIE---------SYDP-------TIEDSYRKQVEID------------------G 46 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc---------ccCC-------cchheEEEEEEEC------------------C
Confidence 68999999999999999995321 110 0000 11100 1122221 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-----HHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-----VLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-----~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
....+.++||||+.+|.......++.+|++++|+|.++....+... +++.....++|++++.||+|+..
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 47 RQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred EEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 3468899999999999999999999999999999998764333322 22222335789999999999853
No 206
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.13 E-value=1.8e-10 Score=110.86 Aligned_cols=112 Identities=22% Similarity=0.285 Sum_probs=74.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+|+++|..|+|||||+++|+... ....... |+... ...+.+. +
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~~------------------~ 46 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDP----------------TIEDSYRKQVVID------------------G 46 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CcCCcCC----------------cchheEEEEEEEC------------------C
Confidence 68999999999999999997421 1100000 11000 0111121 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHH----HcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
..+.++++||||+.+|.......++.+|++++|+|..+....+... .+.... ..++|++++.||+|+..
T Consensus 47 ~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 47 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 2467889999999999998899999999999999988644322222 222222 34789999999999864
No 207
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.12 E-value=2.4e-10 Score=110.94 Aligned_cols=129 Identities=19% Similarity=0.313 Sum_probs=74.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-++|.|+|+.|+|||+|...|.+..- . .+ ++ ++. ..+ .+.. .+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~--~----~T--~t-----------S~e-~n~--~~~~---------------~~ 45 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT--V----PT--VT-----------SME-NNI--AYNV---------------NN 45 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---------B----------------SS-EEE--ECCG---------------SS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc--C----Ce--ec-----------ccc-CCc--eEEe---------------ec
Confidence 47899999999999999999966311 0 00 01 111 111 1110 01
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHH---hhhcCcEEEEEcCCCcceehHH-------HHHHHHH--HcCCceEEEEeccch
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAA---LRVTDGALVVVDCVSGVCVQTE-------TVLRQAI--AERIKPVLFMNKMDR 155 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~a---l~~~D~ailVvda~~g~~~qt~-------~~~~~~~--~~~ip~iv~iNKiD~ 155 (755)
..+..+.+||+|||..+....... +..+.++|+|||++.- ..+-. .++.... ..++|++|+.||.|.
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~-~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl 124 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD-QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDL 124 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH-HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTS
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc-hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccc
Confidence 135578999999999998887776 8899999999999752 21111 1222222 356799999999999
Q ss_pred hhhcccCCHHHHHHHHHHHhhh
Q psy16810 156 ALLELQLDAEDLYQTFQRIVEN 177 (755)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~ii~~ 177 (755)
..+ .++..+...++.-++.
T Consensus 125 ~~A---~~~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 125 FTA---KPPKKIKKLLEKEIDK 143 (181)
T ss_dssp TT------HHHHHHHHHHHHHH
T ss_pred ccc---CCHHHHHHHHHHHHHH
Confidence 764 3445555555544443
No 208
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.12 E-value=4.1e-10 Score=109.02 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=75.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+|+++|..|+|||||+.+++. |........ |+... ...+.+. +
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~~------------------~ 46 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVEKYDP----------------TIEDSYRKQVEVD------------------G 46 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCcccCC----------------cchheEEEEEEEC------------------C
Confidence 689999999999999999963 222111111 11111 1112221 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHH----HcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
..+.++++||||+..|.......++.+|++++|+|.++....+.. ..+.... ..++|++++.||+|+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 47 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred EEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 356788999999999999999999999999999998765433322 2222222 24689999999999864
No 209
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.12 E-value=3.5e-10 Score=113.19 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+||+++|++|+|||||+++|+......... ...|.|.........|.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~--------------~~~~~T~~~~~~~~~~~------------------- 47 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL--------------SASSVTKTCQKESAVWD------------------- 47 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc--------------CCCCcccccceeeEEEC-------------------
Confidence 689999999999999999997654332210 12244554444444553
Q ss_pred CCeEEEEEcCCCCcccH-------HHHHHHh----hhcCcEEEEEcCCCcceehHHHHHHHHHHc-C----CceEEEEec
Q psy16810 89 KGFLINLIDSPGHVDFS-------SEVTAAL----RVTDGALVVVDCVSGVCVQTETVLRQAIAE-R----IKPVLFMNK 152 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~-------~~~~~al----~~~D~ailVvda~~g~~~qt~~~~~~~~~~-~----ip~iv~iNK 152 (755)
+..+++|||||..++. .++.+.+ ..+|++++|+|+.. .....+.+++.+.+. | .++++++|+
T Consensus 48 -~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~ 125 (196)
T cd01852 48 -GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTR 125 (196)
T ss_pred -CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEEC
Confidence 7899999999997752 2333333 34689999999987 666677777766553 4 478899999
Q ss_pred cchhh
Q psy16810 153 MDRAL 157 (755)
Q Consensus 153 iD~~~ 157 (755)
.|...
T Consensus 126 ~d~l~ 130 (196)
T cd01852 126 GDDLE 130 (196)
T ss_pred ccccC
Confidence 99854
No 210
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=1.4e-10 Score=109.02 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=78.5
Q ss_pred EEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCCeE
Q psy16810 13 VIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFL 92 (755)
Q Consensus 13 iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (755)
++|+.|+|||||+++|+....... .+..|. .......+. ....+..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-----------------~~~~t~-~~~~~~~~~----------------~~~~~~~ 46 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-----------------EYETTI-IDFYSKTIE----------------VDGKKVK 46 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-----------------ccccch-hheeeEEEE----------------ECCEEEE
Confidence 589999999999999965432100 001111 111122221 0113678
Q ss_pred EEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-----HHHHHcCCceEEEEeccchhh
Q psy16810 93 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-----RQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 93 i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++++||||+.++.......++.+|++++|+|+..+...+....| ......++|+++++||+|+..
T Consensus 47 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 47 LQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 99999999999988888899999999999999998766665544 334556789999999999865
No 211
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.12 E-value=2e-10 Score=112.29 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=69.0
Q ss_pred EEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCCeE
Q psy16810 13 VIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFL 92 (755)
Q Consensus 13 iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (755)
|+|+.|+|||||+++|....-.+. .. .+.|+......+.+. +++.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~-~~---------------~~~t~~~~~~~~~~~-------------------~~~~ 45 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA-NY---------------PFTTLEPNLGVVEVP-------------------DGAR 45 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc-CC---------------CceeecCcceEEEcC-------------------CCCe
Confidence 589999999999999965321011 01 122322222223331 2678
Q ss_pred EEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCcc-----e--ehHHHHHHHHH----------HcCCceEE
Q psy16810 93 INLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSGV-----C--VQTETVLRQAI----------AERIKPVL 148 (755)
Q Consensus 93 i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g~-----~--~qt~~~~~~~~----------~~~ip~iv 148 (755)
++|+||||+.+ +.......++.+|++++|+|+.... . .+...++..+. ..++|+++
T Consensus 46 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 125 (176)
T cd01881 46 IQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIY 125 (176)
T ss_pred EEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEE
Confidence 99999999843 2334566788899999999998762 1 11122222222 24789999
Q ss_pred EEeccchhh
Q psy16810 149 FMNKMDRAL 157 (755)
Q Consensus 149 ~iNKiD~~~ 157 (755)
++||+|+..
T Consensus 126 v~NK~Dl~~ 134 (176)
T cd01881 126 VLNKIDLDD 134 (176)
T ss_pred EEEchhcCc
Confidence 999999853
No 212
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.11 E-value=5e-10 Score=108.10 Aligned_cols=109 Identities=18% Similarity=0.192 Sum_probs=73.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|+.++|||||+.+|.. |.. ....+ .-|..+ ..+.+ .
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~----------~~~~p---t~g~~~----~~~~~--------------------~ 42 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEI----------VTTIP---TIGFNV----ETVEY--------------------K 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCC----------cccCC---CCCcce----EEEEE--------------------C
Confidence 589999999999999999842 111 11111 011111 11222 3
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-ehHHHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-VQTETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-~qt~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
...++|+||||+..|.......++.+|++|+|+|+++-.. .+....|..... .+.|++++.||+|+..
T Consensus 43 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 6789999999999998888888999999999999986321 122233333221 2579999999999854
No 213
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.11 E-value=7.6e-10 Score=108.66 Aligned_cols=111 Identities=19% Similarity=0.145 Sum_probs=76.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
...|+++|..++|||||+.+|.. |.. .+.. -|+......+.+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~----------~~~~-------~t~~~~~~~~~~------------------- 54 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GES----------VTTI-------PTIGFNVETVTY------------------- 54 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCC----------CCcC-------CccccceEEEEE-------------------
Confidence 46799999999999999999942 111 1110 122111112222
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
++..+.|+||||+..|.......++.+|++|+|+|+++.- .....+.|..+. ..++|++++.||+|+..
T Consensus 55 -~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 55 -KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred -CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 3678999999999999888888899999999999998642 122233443332 23579999999999864
No 214
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.11 E-value=2.8e-10 Score=110.48 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=75.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-+|+++|..|+|||||+.+|+... .. ..+. ..-|++.. ...+.. ++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~~----------~~~~--~t~~~~~~--~~~~~~------------------~~ 47 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FT----------SAFV--STVGIDFK--VKTVFR------------------ND 47 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CC----------CCCC--CceeeEEE--EEEEEE------------------CC
Confidence 479999999999999999995421 10 0000 00011111 011111 11
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
....+.++||||+.+|.......++.+|++++|+|.++....+...-| +.... ...|++++.||+|+..
T Consensus 48 ~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 48 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred EEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 246899999999999998888999999999999999865433322222 23333 2568999999999854
No 215
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.11 E-value=9.6e-10 Score=108.56 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=75.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+...|+++|..++|||||+.+|.. +... .. ....|.++ ..+.+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~--~~~~----------~~---~pt~g~~~----~~~~~------------------ 58 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKL--GEIV----------TT---IPTIGFNV----ETVEY------------------ 58 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc--CCCc----------cc---cCCcceeE----EEEEE------------------
Confidence 346899999999999999999842 1111 00 01112221 12223
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh-HHHHHHHH-H---HcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQA-I---AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~-~---~~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+..|.......++.+|++|+|+|+++...-+ ....+... . ..++|++++.||+|+..
T Consensus 59 --~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 59 --KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred --CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 3688999999999999888888899999999999998743221 11122222 1 13689999999999864
No 216
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.10 E-value=3.5e-10 Score=112.73 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=73.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceE--EEEeeeCccccccccCCCccccC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAI--SMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.|+++|..|+|||||+.+++...-... . +. .|+..... .+.+.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~-----~--~~----------~t~~~~~~~~~~~~~------------------ 46 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG-----N--FI----------ATVGIDFRNKVVTVD------------------ 46 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc-----C--cC----------CcccceeEEEEEEEC------------------
Confidence 589999999999999999954211100 0 00 01111111 11121
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH---cCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA---ERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~ip~iv~iNKiD~~ 156 (755)
+....++|+||||+..|.......++.+|++|+|+|++.....+... .+..+.. .++|++++.||+|+.
T Consensus 47 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 47 GVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred CEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 12568999999999999888888899999999999998754332222 2223332 367999999999985
No 217
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.10 E-value=4e-10 Score=108.74 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=74.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..|+++|..|+|||||+.+++... ....... |+... ...+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~~------------------ 45 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDP----------------TIEDSYRKQIEVD------------------ 45 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCC----------------chhhhEEEEEEEC------------------
Confidence 479999999999999999996421 1100000 11000 0111111
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH----cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+....+.|+||||+.+|.......++.+|++++|+|.++....... ..+..+.. .++|++++.||+|+..
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 46 GQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred CEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1246788999999999988888889999999999998874332222 22223322 3689999999999853
No 218
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.10 E-value=9.1e-10 Score=113.49 Aligned_cols=113 Identities=23% Similarity=0.222 Sum_probs=75.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhcccccc-ceEEEEeeeCccccccccCCCccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKS-TAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
..++|.|.|++|+|||||+.+|....-.+ .... +|.+. ...+|.+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEv-----A~YP------------FTTK~i~vGhfe~----------------- 212 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEV-----APYP------------FTTKGIHVGHFER----------------- 212 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCcc-----CCCC------------ccccceeEeeeec-----------------
Confidence 56899999999999999999993322111 1111 12211 1223333
Q ss_pred cCCCCeEEEEEcCCCCcc--------cHHHHHHHhhhc-CcEEEEEcCCCcc----eehHHHHHHHH-HHcCCceEEEEe
Q psy16810 86 KNEKGFLINLIDSPGHVD--------FSSEVTAALRVT-DGALVVVDCVSGV----CVQTETVLRQA-IAERIKPVLFMN 151 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~d--------f~~~~~~al~~~-D~ailVvda~~g~----~~qt~~~~~~~-~~~~ip~iv~iN 151 (755)
+...|++|||||.-| .-.+.+.||+-. +.+++++|+++-+ +.|-. +|+.. ..+..|+++|+|
T Consensus 213 ---~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~~p~v~V~n 288 (346)
T COG1084 213 ---GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFKAPIVVVIN 288 (346)
T ss_pred ---CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhcCCCeEEEEe
Confidence 366999999999965 345677788754 5678899998743 33433 34444 456679999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|+|...
T Consensus 289 K~D~~~ 294 (346)
T COG1084 289 KIDIAD 294 (346)
T ss_pred cccccc
Confidence 999853
No 219
>PRK11058 GTPase HflX; Provisional
Probab=99.10 E-value=3.9e-10 Score=125.25 Aligned_cols=114 Identities=24% Similarity=0.209 Sum_probs=75.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+..|+|+|.+|+|||||+++|+...-... ... +.|++.....+.|.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~-~~~---------------~tTld~~~~~i~l~------------------ 242 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAA-DQL---------------FATLDPTLRRIDVA------------------ 242 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeec-cCC---------------CCCcCCceEEEEeC------------------
Confidence 46799999999999999999954221110 111 23444333344443
Q ss_pred CCCeEEEEEcCCCCccc--------HHHHHHHhhhcCcEEEEEcCCCcceehHH----HHHHHHHHcCCceEEEEeccch
Q psy16810 88 EKGFLINLIDSPGHVDF--------SSEVTAALRVTDGALVVVDCVSGVCVQTE----TVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df--------~~~~~~al~~~D~ailVvda~~g~~~qt~----~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
+...+.|+||||+... ...+...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+
T Consensus 243 -~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL 321 (426)
T PRK11058 243 -DVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDM 321 (426)
T ss_pred -CCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccC
Confidence 2347889999998432 22344567889999999999886533322 2334444457899999999998
Q ss_pred h
Q psy16810 156 A 156 (755)
Q Consensus 156 ~ 156 (755)
.
T Consensus 322 ~ 322 (426)
T PRK11058 322 L 322 (426)
T ss_pred C
Confidence 5
No 220
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.10 E-value=4.8e-10 Score=110.30 Aligned_cols=127 Identities=18% Similarity=0.167 Sum_probs=79.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
....|+++|..++|||||+.++.... .. +. + ...+++......+.+....+ .....
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~--~~----~~--~--------~~t~~~~~~~~~~~~~~~~~--------~~~~~ 58 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNK--FN----PK--F--------ITTVGIDFREKRVVYNSSGP--------GGTLG 58 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CC----cc--C--------CCccceEEEEEEEEEcCccc--------ccccc
Confidence 45789999999999999999995421 11 00 0 00011111111222221000 00011
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH----cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~----~~ip~iv~iNKiD~~~ 157 (755)
......+.|+||||+..|.......++.+|++|+|+|+++.-..+...-|. .... .+.|++++.||+|+..
T Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 59 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred CCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 123578999999999999988889999999999999998754434333332 2222 2578999999999854
No 221
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.09 E-value=4.7e-10 Score=108.51 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=75.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|..++|||||+.+|........ ++ +. ...|..+. ...+.+. ++.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~----~~--~~------~t~~~~~~--~~~~~~~-----------------~~~ 50 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP----KN--YL------MTTGCDFV--VKEVPVD-----------------TDN 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC----cc--CC------CceEEEEE--EEEEEeC-----------------CCC
Confidence 689999999999999999864211111 00 00 00011110 0111111 124
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
...++++||||+..|.......++.+|++++|+|.++.........| ..... .++|.++++||+|+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 57899999999999888888899999999999999875433222223 22333 3589999999999853
No 222
>PLN03110 Rab GTPase; Provisional
Probab=99.09 E-value=4.9e-10 Score=113.96 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=79.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.++|||||+.+|+...-.. +. ...+.+......+.+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-----------~~-----~~t~g~~~~~~~v~~~----------------- 57 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-----------ES-----KSTIGVEFATRTLQVE----------------- 57 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-----------CC-----CCceeEEEEEEEEEEC-----------------
Confidence 45799999999999999999995421100 00 0011111111122221
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+..|.......++.+|++|+|+|.++....+....| ..+.. .++|++++.||+|+..
T Consensus 58 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 58 -GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred -CEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 1356899999999999998888899999999999999875444443333 33333 3689999999999853
No 223
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.09 E-value=4.3e-10 Score=107.91 Aligned_cols=113 Identities=20% Similarity=0.252 Sum_probs=75.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+|+|+.|+|||||+++|+... ...... +. +-......+.+. +.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~---------~~------~~~~~~~~~~~~------------------~~ 45 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYD---------PT------IEDSYRKTIVVD------------------GE 45 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcC---------CC------hhHeEEEEEEEC------------------CE
Confidence 58999999999999999996532 110000 00 000111112221 12
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee-hHHHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
.+.++++||||+.++.......++.+|++++|+|....... +....|..... .++|+++++||+|+..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 57899999999999999999999999999999998764321 22333333322 3689999999999864
No 224
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.08 E-value=4e-10 Score=110.35 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-+|+++|..|+|||||+.+++.. .... .+ .-|+... ...+.+.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~--~f~~----------~~------~~t~~~~~~~~~~~~------------------ 46 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISH--SFPD----------YH------DPTIEDAYKQQARID------------------ 46 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC--CCCC----------Cc------CCcccceEEEEEEEC------------------
Confidence 36899999999999999998642 1110 00 0011100 0111121
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH----HcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||..+|..-....++.+|++|+|+|.++....++..-| .... ..++|++++.||+|+..
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 47 NEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred CEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 1356899999999999998888899999999999999987665554322 2222 24689999999999854
No 225
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.08 E-value=5.4e-10 Score=113.86 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=79.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|..|+|||||+.+++.. .... . ..-|+........+. .
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~--~f~~----------~------~~~tig~~~~~~~~~----------------~ 57 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK----------K------YEPTIGVEVHPLDFF----------------T 57 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhC--CCCC----------c------cCCccceeEEEEEEE----------------E
Confidence 4568999999999999999998542 1110 0 001221111122221 0
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HH--HcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AI--AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~--~~~ip~iv~iNKiD~~~ 157 (755)
+.....++++||||+.+|..-....++.+|++|+|+|.++....+...-|.. +. ..++|+++|.||+|+..
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 1135789999999999998777777899999999999998765554444422 22 24689999999999854
No 226
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.07 E-value=6.9e-10 Score=107.28 Aligned_cols=112 Identities=23% Similarity=0.273 Sum_probs=74.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccc-cceEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIK-STAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+|+++|.+|+|||||+.+++. |........ |+. .....+..+ +
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~~------------------~ 46 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVS--GTFIEKYDP----------------TIEDFYRKEIEVD------------------S 46 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCCCC----------------chhheEEEEEEEC------------------C
Confidence 699999999999999999864 222110000 110 000111111 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH----cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
....++|+||||+..|.......++.+|++++|+|.++...-+.. ..+....+ .++|++++.||+|+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 47 SPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred EEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 245788999999999988888888999999999999875432222 22222322 4789999999999853
No 227
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.06 E-value=4.2e-10 Score=112.68 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HHH--cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~--~~ip~iv~iNKiD~~~ 157 (755)
+...++|+||||+.+|.......++.+|++|+|+|.+.....+....|.. +.+ .++|+++|.||+|+..
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 36789999999999999988899999999999999999876665555544 333 4789999999999853
No 228
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.06 E-value=2.6e-10 Score=111.52 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=74.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+|+++|+.++|||||+.+++... .... ++ -|+... ...+.+. +
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~--~~~~------~~----------~t~~~~~~~~~~~~------------------~ 45 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDA--FPEE------YV----------PTVFDHYAVSVTVG------------------G 45 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC------CC----------CceeeeeEEEEEEC------------------C
Confidence 68999999999999999986521 1100 00 011000 0111111 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH-HHHH--HcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL-RQAI--AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~--~~~ip~iv~iNKiD~~~ 157 (755)
..+.++++||||+.+|.......++.+|++++|+|..+.-..+.. ..| .... ..++|++++.||+|+..
T Consensus 46 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 46 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred EEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 256789999999999988777788999999999999876443332 122 2222 35789999999999853
No 229
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.06 E-value=9.2e-10 Score=109.60 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=74.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.|+++|..|+|||||+.+|+.. ........ |+... ...+.+. +
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~--~f~~~~~~----------------t~~~~~~~~~~~~------------------~ 44 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLN--HFVETYDP----------------TIEDSYRKQVVVD------------------G 44 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CCCccCCC----------------chHhhEEEEEEEC------------------C
Confidence 3899999999999999999642 22110000 11000 0111111 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH------cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA------ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~------~~ip~iv~iNKiD~~~ 157 (755)
....++|+||||+.+|.......++.+|++|+|+|.++........ .+..+.. .++|++++.||+|+..
T Consensus 45 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 45 QPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 2457899999999999988888999999999999998754333322 2222222 4689999999999853
No 230
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.05 E-value=9.9e-10 Score=109.08 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=80.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
+.+....|+++|..++|||||+.++.. +... . +....++..-....+.++
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~--~~~~----------~----~~~~t~~~~~~~~~i~~~-------------- 51 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQD--GSTE----------S----PYGYNMGIDYKTTTILLD-------------- 51 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHc--CCCC----------C----CCCCcceeEEEEEEEEEC--------------
Confidence 345678999999999999999999854 1111 0 000011111111112221
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+.+|.......++.+|++|+|+|.+.....+...-| .++.+ .++|+|++.||+|+..
T Consensus 52 ----~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 52 ----GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred ----CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 1357899999999999998888888999999999999876544433333 33332 3679999999999853
No 231
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.05 E-value=2.7e-09 Score=114.87 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=74.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+-.|+|+|.+++|||||+++|....-.+.+ .+. .|.......+.+.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~-y~f---------------TT~~p~ig~v~~~------------------ 202 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIAD-YPF---------------TTLVPNLGVVRVD------------------ 202 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccC-CCC---------------CccCCEEEEEEeC------------------
Confidence 578999999999999999999543211110 111 1333333333442
Q ss_pred CCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCc---ce-ehHHHHHHHHHH-----cCCceEEEEe
Q psy16810 88 EKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSG---VC-VQTETVLRQAIA-----ERIKPVLFMN 151 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g---~~-~qt~~~~~~~~~-----~~ip~iv~iN 151 (755)
+...+.|+||||..+ +.....+.+..+|++|+|+|++.. -. .+-..+.+++.. .+.|+++++|
T Consensus 203 -~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 203 -DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred -CceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 247899999999853 334556667789999999999864 11 122222233333 3679999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|+|+..
T Consensus 282 K~DL~~ 287 (329)
T TIGR02729 282 KIDLLD 287 (329)
T ss_pred CccCCC
Confidence 999854
No 232
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.05 E-value=7.3e-10 Score=108.22 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=74.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|..++|||||+.+++.. ... +.+ .-|+........+. .++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~--~f~----------~~~------~~t~~~~~~~~~~~----------------~~~~ 47 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD--VFD----------KNY------KATIGVDFEMERFE----------------ILGV 47 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCC----------CCC------CCceeeEEEEEEEE----------------ECCE
Confidence 4889999999999999999642 111 100 01222111111111 0123
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHHcC----CceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIAER----IKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~~~----ip~iv~iNKiD~~~ 157 (755)
...++|+||||..+|.......++.+|++++|+|+.+........-|. ...+.. .|+++|.||+|+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 578999999999999988888999999999999998743333333333 233332 45789999999853
No 233
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.05 E-value=1.2e-09 Score=117.60 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=76.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+-.|+|+|.+|||||||+++|....-.+. ..++ .|+......+.|.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va-~ypf---------------TT~~p~~G~v~~~------------------ 203 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIA-DYPF---------------TTLHPNLGVVRVD------------------ 203 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccC-CCCC---------------ceeCceEEEEEeC------------------
Confidence 56899999999999999999954321111 0111 2444444444442
Q ss_pred CCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH-----cCCceEEEEeccc
Q psy16810 88 EKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA-----ERIKPVLFMNKMD 154 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~-----~~ip~iv~iNKiD 154 (755)
++..+.++||||..+ +.....+.+..+|++|+|+|+++.-..+... +...+.. .+.|.++++||+|
T Consensus 204 -~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiD 282 (335)
T PRK12299 204 -DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKID 282 (335)
T ss_pred -CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcc
Confidence 356799999999853 4456666778899999999998643222222 3333333 3679999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 283 L~~ 285 (335)
T PRK12299 283 LLD 285 (335)
T ss_pred cCC
Confidence 854
No 234
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.05 E-value=4.6e-10 Score=109.23 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=73.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..|+|||||+++|+...- . .+... .........+.+ .+.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~--~---~~~~~------------~~~~~~~~~~~~------------------~~~ 46 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF--P---TEYVP------------TVFDNYSATVTV------------------DGK 46 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--C---CCCCC------------ceeeeeEEEEEE------------------CCE
Confidence 689999999999999999965321 0 00000 000000111111 123
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
.+.+.++||||+.+|.......++.+|++++|+|+.+....+. ...| ..... .++|+++++||+|+..
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRD 118 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhh
Confidence 5789999999999987766677789999999999987443222 2222 22232 3589999999999865
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.05 E-value=1.6e-09 Score=113.92 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-||+++|+.|+|||||+++|+...-.... +. .+....+..+.+++......+.++ +
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~---~~---~~~~~~~~~~T~~i~~~~~~i~~~------------------g 60 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSD---YP---PDPAEEHIDKTVEIKSSKAEIEEN------------------G 60 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCcccc---CC---CCccccccCCceEEEEEEEEEEEC------------------C
Confidence 58999999999999999999653221111 00 000111122222232222222221 1
Q ss_pred CCeEEEEEcCCCCcccHH---------------------HHHHHhh-------hcCcEEEEEcCCC-cceehHHHHHHHH
Q psy16810 89 KGFLINLIDSPGHVDFSS---------------------EVTAALR-------VTDGALVVVDCVS-GVCVQTETVLRQA 139 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~---------------------~~~~al~-------~~D~ailVvda~~-g~~~qt~~~~~~~ 139 (755)
....+++|||||+.|+.. +.....+ .+|++++++++.. ++.......++.+
T Consensus 61 ~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l 140 (276)
T cd01850 61 VKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL 140 (276)
T ss_pred EEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 236799999999877642 1111222 3578889998774 7777777788877
Q ss_pred HHcCCceEEEEeccchh
Q psy16810 140 IAERIKPVLFMNKMDRA 156 (755)
Q Consensus 140 ~~~~ip~iv~iNKiD~~ 156 (755)
.. ++|+|+|+||+|+.
T Consensus 141 ~~-~v~vi~VinK~D~l 156 (276)
T cd01850 141 SK-RVNIIPVIAKADTL 156 (276)
T ss_pred hc-cCCEEEEEECCCcC
Confidence 65 89999999999984
No 236
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.05 E-value=2.2e-09 Score=109.03 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=75.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|..++|||||+.+++... +.+. .-|+........| .
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~------------f~~~-------~~Tig~~~~~~~~--------------------~ 42 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR------------FKDT-------VSTVGGAFYLKQW--------------------G 42 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC------------CCCC-------CCccceEEEEEEe--------------------e
Confidence 58999999999999999995421 1000 0122211111222 2
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH---cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
.+.++|+||||+..|.......++.+|++|+|+|.++....+... .|..+.+ .++|+|+|.||+|+..
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 43 PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 578999999999999888888899999999999998754333322 2333332 3579999999999864
No 237
>PLN03108 Rab family protein; Provisional
Probab=99.03 E-value=1.2e-09 Score=110.54 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=78.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc--eEEEEeeeCccccccccCCCc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST--AISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (755)
+...+|+++|+.++|||||+++|+...-... +. .|+... ...+.+.
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~-----------~~-------~ti~~~~~~~~i~~~-------------- 51 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------HD-------LTIGVEFGARMITID-------------- 51 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------CC-------CCccceEEEEEEEEC--------------
Confidence 4567999999999999999999954211000 00 111111 1112221
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH---cCCceEEEEeccchhh
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+.+|.......++.+|++|+|+|++.....+...-|. .... .++|++++.||+|+..
T Consensus 52 ----~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 52 ----NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred ----CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 12457899999999999988888999999999999998755444332332 2222 3689999999999854
No 238
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.02 E-value=4e-10 Score=102.86 Aligned_cols=113 Identities=22% Similarity=0.248 Sum_probs=70.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|.++|+.|+|||||+++|+..... +....+...+.++..... .+. ..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~------------------~~ 48 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVI--VVD------------------GD 48 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEE--EET------------------TE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEE--Eec------------------CC
Confidence 3789999999999999999764322 000001111222221111 111 12
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee-hHHHHH---HHHHH--cCCceEEEEeccc
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVL---RQAIA--ERIKPVLFMNKMD 154 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~---~~~~~--~~ip~iv~iNKiD 154 (755)
...+.++|++|...|.......+..+|++++|+|.++.-.. +...++ ..... .++|++++.||.|
T Consensus 49 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 49 RQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 44589999999988887766679999999999999986532 222232 22221 3589999999998
No 239
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.02 E-value=1.3e-09 Score=110.88 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=73.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|..++|||||+++|+... .. ..+ ..-++++.....+.+. +..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~----------~~~----~~T~~~d~~~~~i~~~-----------------~~~ 48 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FG----------KSY----KQTIGLDFFSKRVTLP-----------------GNL 48 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CC----------CCC----CCceeEEEEEEEEEeC-----------------CCC
Confidence 58999999999999999995421 11 000 0001111111111121 113
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc------CCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE------RIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~------~ip~iv~iNKiD~~ 156 (755)
...++|+||||+..|.......++.+|++|+|+|+++....+....| ..+.+. +.|++++.||+|+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 57899999999998888888889999999999999875433322223 333322 35788999999985
No 240
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.01 E-value=1.2e-09 Score=108.23 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=74.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceE-EEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAI-SMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.|+++|..|+|||||+.+|+... ... . +. -|+..... .+.. .++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~--~~~----~--~~----------~t~~~~~~~~i~~-----------------~~~ 46 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK--FPE----E--YV----------PTVFENYVTNIQG-----------------PNG 46 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc--CCC----C--CC----------CeeeeeeEEEEEe-----------------cCC
Confidence 68999999999999999996421 110 0 00 01111000 0111 012
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH---cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
....+.++||||+.+|.......++.+|++|+|+|+++....+.. ..|..... .++|+|++.||.|+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 47 KIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred cEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 356789999999999988777788999999999999875544333 23432222 3689999999999853
No 241
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.01 E-value=3e-09 Score=102.62 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=73.0
Q ss_pred EEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCC
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKG 90 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (755)
|+++|+.|+|||||++.|+....... ..+ ..+.|... ..+.+ .
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~--~~~------------~~~~t~~~--~~~~~---------------------~ 44 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR--TSK------------TPGKTQLI--NFFNV---------------------N 44 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee--ecC------------CCCcceeE--EEEEc---------------------c
Confidence 79999999999999999963211100 011 11222211 11111 2
Q ss_pred eEEEEEcCCCCccc----------HHHHHHHh---hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 91 FLINLIDSPGHVDF----------SSEVTAAL---RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 91 ~~i~lIDtPGh~df----------~~~~~~al---~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
..+.++||||+.+. ...+...+ ..++++++|+|...........+++.+...+.|+++++||+|..
T Consensus 45 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 45 DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 38899999998653 22222223 34578999999988877777778888888899999999999984
No 242
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.01 E-value=2e-09 Score=106.33 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=74.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
...|+++|..++|||||+.++.. |... +. +...|..+ ..+.+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~--~~~~----------~~---~~T~~~~~----~~~~~------------------- 58 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL--GEVV----------TT---IPTIGFNV----ETVEY------------------- 58 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCcc----------cc---CCccccce----EEEEE-------------------
Confidence 35799999999999999999832 2111 10 00111111 12222
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-ehHHHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-VQTETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-~qt~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
.+..++++||||+..|.......++.+|++|+|+|+++--. ......+..... .++|++++.||.|+..
T Consensus 59 -~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 59 -KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred -CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 36889999999999998888889999999999999975321 112222332211 3579999999999854
No 243
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.99 E-value=1.8e-09 Score=107.71 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..++|||||+.+|+...-.. +. +. -|+......-.+. .++.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-----~~--~~----------~t~~~~~~~~~~~----------------~~~~ 48 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-----GP--YQ----------NTIGAAFVAKRMV----------------VGER 48 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-----cC--cc----------cceeeEEEEEEEE----------------ECCE
Confidence 68999999999999999996521100 00 00 0111111111111 0113
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc--CCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
...++++||||...|.......++.+|++++|+|.++....+....| ..+... ++|++++.||+|+..
T Consensus 49 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 49 VVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 46788999999988877777778899999999999875433322222 333332 689999999999853
No 244
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.99 E-value=1.9e-09 Score=105.21 Aligned_cols=116 Identities=18% Similarity=0.092 Sum_probs=76.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcc-ccccCcccccCCchhhhhhccccccc--eEEEEeeeCccccccccCCC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIA-GAKAGETRFTDTRKDEQERCITIKST--AISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~ 82 (755)
.++.+|+++|..|+|||||+.+++.. ... .... -|+... ...+.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~--~f~~~~~~----------------~T~~~~~~~~~~~~~------------- 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR--SFSLNAYS----------------PTIKPRYAVNTVEVY------------- 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC--CCCcccCC----------------CccCcceEEEEEEEC-------------
Confidence 36789999999999999999999542 111 0000 011111 0112221
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHH-HcCCceEEEEeccchhh
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAI-AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~-~~~ip~iv~iNKiD~~~ 157 (755)
+....++++||+|...|.......++.+|++++|+|+++.-..+.. ..++... ..++|+++++||+|+..
T Consensus 51 -----~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 51 -----GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred -----CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 1246788999999999877777788999999999999775322221 2233221 23689999999999853
No 245
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.98 E-value=2e-09 Score=106.89 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=74.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..++|||||+.+|+.. .. .+.+ ...-|.+.. ...+.+ ++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~--~~----------~~~~--~~t~~~~~~--~~~~~~------------------~~~ 47 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTED--EF----------SEST--KSTIGVDFK--IKTVYI------------------ENK 47 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CC----------CCCC--CCceeeEEE--EEEEEE------------------CCE
Confidence 6899999999999999999532 11 1100 000011111 111111 113
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~ 156 (755)
.+.+.++||||+.+|.......++.+|++|+|+|.++.-.......| ..... ..+|++++.||.|+.
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 56789999999999998899999999999999999875433332223 22222 247899999999986
No 246
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.98 E-value=1.5e-09 Score=109.90 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|..++|||||+++|+... ... . .+ ..+++......+.+. ++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~--~-----~~-------~ti~~d~~~~~i~~~-----------------~~ 49 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAE--V-----SD-------PTVGVDFFSRLIEIE-----------------PG 49 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--C-----CC-------ceeceEEEEEEEEEC-----------------CC
Confidence 579999999999999999996421 110 0 00 011111111111111 12
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH----cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
....++++||||+..|.......++.+|++|+|+|.++...-.... .+..+.+ ..+|++++.||+|+..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 50 VRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred CEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 3568999999999999888888899999999999998753222222 2222222 2456788999999854
No 247
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.98 E-value=1.5e-09 Score=106.46 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=84.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.++..+|.++|..|||||||+.+|.. +.... .. -|+......+.+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~--~~~~~-------------~~----pT~g~~~~~i~~---------------- 55 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKN--GEISE-------------TI----PTIGFNIEEIKY---------------- 55 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHS--SSEEE-------------EE----EESSEEEEEEEE----------------
T ss_pred cCcEEEEEEECCCccchHHHHHHhhh--ccccc-------------cC----cccccccceeee----------------
Confidence 36678999999999999999999943 21110 00 122222233444
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHH----HcCCceEEEEeccchhhhc
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAI----AERIKPVLFMNKMDRALLE 159 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~----~~~ip~iv~iNKiD~~~~~ 159 (755)
+++.++++|.+|+..|..-....+..+|++|+|||+++.- ..+....+..+. ..++|++++.||.|...+
T Consensus 56 ----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~- 130 (175)
T PF00025_consen 56 ----KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA- 130 (175)
T ss_dssp ----TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS-
T ss_pred ----CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc-
Confidence 3789999999999888888888889999999999999743 223333333322 246899999999998763
Q ss_pred ccCCHHHHHH
Q psy16810 160 LQLDAEDLYQ 169 (755)
Q Consensus 160 ~~~~~~~~~~ 169 (755)
++.+++..
T Consensus 131 --~~~~~i~~ 138 (175)
T PF00025_consen 131 --MSEEEIKE 138 (175)
T ss_dssp --STHHHHHH
T ss_pred --chhhHHHh
Confidence 44555443
No 248
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.97 E-value=4.1e-09 Score=109.13 Aligned_cols=112 Identities=18% Similarity=0.263 Sum_probs=73.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccc-cceEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIK-STAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.|+++|..|+|||||+.+++. |..... +. -|+. .....+.+ ++
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~--~~f~~~------y~----------pTi~d~~~k~~~i------------------~~ 45 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLG--GRFEEQ------YT----------PTIEDFHRKLYSI------------------RG 45 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHc--CCCCCC------CC----------CChhHhEEEEEEE------------------CC
Confidence 589999999999999999964 211100 00 1111 00111111 11
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH------------cCCceEEEEeccch
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA------------ERIKPVLFMNKMDR 155 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~------------~~ip~iv~iNKiD~ 155 (755)
..+.++|+||||+.+|.......++.+|++|+|+|.++...-+.. ..+.+..+ .++|+|++.||+|+
T Consensus 46 ~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl 125 (247)
T cd04143 46 EVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR 125 (247)
T ss_pred EEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccc
Confidence 357899999999999987666778899999999999875433222 22223322 36799999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 126 ~~ 127 (247)
T cd04143 126 DF 127 (247)
T ss_pred hh
Confidence 63
No 249
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.96 E-value=2.1e-09 Score=105.54 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce-EEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA-ISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.+|+++|..|+|||||+.++++. ... +.+ -.|+.... ..+.+.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~--~f~----------~~~------~pt~~~~~~~~~~~~------------------ 45 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTN--KFP----------SEY------VPTVFDNYAVTVMIG------------------ 45 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCC----------CCC------CCceeeeeEEEEEEC------------------
Confidence 47999999999999999999642 111 000 01111000 111121
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHH-HHHH--cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLR-QAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~-~~~~--~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|..-....++.+|++|+|+|.++...-+.. ..|. .... .++|+|++.||+|+..
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 46 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred CEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 1347899999999999987777788999999999999886544433 2343 2222 3689999999999853
No 250
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.96 E-value=9.8e-09 Score=114.84 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=73.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+..|+|+|.+++|||||+++|....-.+. ..+ +.|+......+.+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIa-dyp---------------fTTl~P~lGvv~~~------------------ 204 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIA-DYP---------------FTTLVPNLGVVQAG------------------ 204 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcccc-ccC---------------cccccceEEEEEEC------------------
Confidence 57899999999999999999954321111 011 23444333444442
Q ss_pred CCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCc---cee--hHHHHHHHH--------------HH
Q psy16810 88 EKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSG---VCV--QTETVLRQA--------------IA 141 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g---~~~--qt~~~~~~~--------------~~ 141 (755)
+..+.|+||||..+ ...+..+.+..+|++|+|||++.- -.+ +-..+...+ ..
T Consensus 205 --~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l 282 (500)
T PRK12296 205 --DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDL 282 (500)
T ss_pred --CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhh
Confidence 67899999999753 223455667789999999999741 111 111111122 12
Q ss_pred cCCceEEEEeccchhh
Q psy16810 142 ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 142 ~~ip~iv~iNKiD~~~ 157 (755)
.+.|+|+++||+|+..
T Consensus 283 ~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 283 AERPRLVVLNKIDVPD 298 (500)
T ss_pred cCCCEEEEEECccchh
Confidence 4689999999999864
No 251
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.95 E-value=4.5e-09 Score=116.12 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=73.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+.-|+++|.+|+|||||+++|....-.+.+ .++ .|+......+.+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~-ypf---------------TTl~PnlG~v~~~------------------ 203 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIAN-YHF---------------TTLVPNLGVVETD------------------ 203 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCcccc-CCc---------------ceeceEEEEEEEe------------------
Confidence 458999999999999999999643221110 111 2333333333332
Q ss_pred CCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCc--cee--hHHHHHHHHHH-----cCCceEEEEe
Q psy16810 88 EKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSG--VCV--QTETVLRQAIA-----ERIKPVLFMN 151 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g--~~~--qt~~~~~~~~~-----~~ip~iv~iN 151 (755)
++..++|+||||..+ +.....+.+..+|++|+|||++.. ..+ .-+.+...+.. .++|.++++|
T Consensus 204 -~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 204 -DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred -CCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 257899999999853 234455666779999999999753 111 22233333433 3689999999
Q ss_pred ccchh
Q psy16810 152 KMDRA 156 (755)
Q Consensus 152 KiD~~ 156 (755)
|+|+.
T Consensus 283 K~DL~ 287 (424)
T PRK12297 283 KMDLP 287 (424)
T ss_pred CCCCc
Confidence 99974
No 252
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.94 E-value=1.8e-09 Score=105.56 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=50.9
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
.+.+.++||||+.+|.......++.+|++|+|+|.++.-.-+.. ..| ..... .++|++++.||+|+..
T Consensus 45 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 45 PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred EEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 56789999999999987777788999999999999875332222 122 22332 3789999999999853
No 253
>KOG1423|consensus
Probab=98.94 E-value=3e-09 Score=107.95 Aligned_cols=117 Identities=26% Similarity=0.284 Sum_probs=82.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+.-+||++|.+|+|||||++.|+...-...+.+..+|+ .. +.-.+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr---------------~~--ilgi~----------------- 115 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTR---------------HR--ILGII----------------- 115 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccccccccccee---------------ee--eeEEE-----------------
Confidence 357899999999999999999997654333322322222 00 00011
Q ss_pred cCCCCeEEEEEcCCCCc------------ccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc-CCceEEEEec
Q psy16810 86 KNEKGFLINLIDSPGHV------------DFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-RIKPVLFMNK 152 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~------------df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~-~ip~iv~iNK 152 (755)
..+..++.|.||||.+ .|......|+..||.+++|+|+.+--....-++++...++ ++|-|+|.||
T Consensus 116 -ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnk 194 (379)
T KOG1423|consen 116 -TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNK 194 (379)
T ss_pred -ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccc
Confidence 1257899999999984 3555777899999999999999973333334566666665 5799999999
Q ss_pred cchhh
Q psy16810 153 MDRAL 157 (755)
Q Consensus 153 iD~~~ 157 (755)
+|...
T Consensus 195 id~~k 199 (379)
T KOG1423|consen 195 IDKLK 199 (379)
T ss_pred hhcch
Confidence 99863
No 254
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.93 E-value=2e-09 Score=105.39 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=73.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhcccc-ccceEEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITI-KSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.++++|..|+|||||+.+++... ... .+. -|+ ..-...+..+ +
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~----------~~~-------~t~~~~~~~~~~~~------------------~ 45 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPT----------EYV-------PTAFDNFSVVVLVD------------------G 45 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCC----------CCC-------CceeeeeeEEEEEC------------------C
Confidence 58999999999999999885521 111 000 011 0000111111 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH--HHHHHHHHH--cCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT--ETVLRQAIA--ERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt--~~~~~~~~~--~~ip~iv~iNKiD~~ 156 (755)
....+.++||||+.+|.......++.+|++|+|+|.++...-+. +..+..... .++|++++.||+|+.
T Consensus 46 ~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 46 KPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 24678999999999988777778899999999999987543332 223333333 368999999999985
No 255
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.93 E-value=2.3e-09 Score=106.60 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceE-EEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAI-SMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
|.|+++|..|+|||||+.+++.. ... +.+ ..|+..... .+.. +
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~--~~~----------~~~------~~t~~~~~~~~i~~------------------~ 44 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRG--YFP----------QVY------EPTVFENYVHDIFV------------------D 44 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCC----------Ccc------CCcceeeeEEEEEE------------------C
Confidence 57999999999999999999542 111 000 011111100 0111 1
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HH-HHHHH--cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+.+|..-....++.+|++|+|.|.++-...+... .| ..+.. .++|++++.||+|+..
T Consensus 45 ~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 45 GLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLRE 118 (189)
T ss_pred CEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 13578999999999998766666788999999999988765444332 23 23332 3689999999999854
No 256
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.93 E-value=2.3e-09 Score=124.09 Aligned_cols=105 Identities=24% Similarity=0.246 Sum_probs=74.0
Q ss_pred eCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCCCeEEE
Q psy16810 15 AHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFLIN 94 (755)
Q Consensus 15 Gh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 94 (755)
|.+|+|||||+++|....- ..+ ...|.|++.....+.|+ ++.++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-----~v~-----------n~pG~Tv~~~~~~i~~~--------------------~~~i~ 44 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-----TVG-----------NWPGVTVEKKEGKLGFQ--------------------GEDIE 44 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-----eec-----------CCCCeEEEEEEEEEEEC--------------------CeEEE
Confidence 7899999999999953211 111 12467776655555553 67899
Q ss_pred EEcCCCCcccHHH-----HHH---HhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 95 LIDSPGHVDFSSE-----VTA---ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 95 lIDtPGh~df~~~-----~~~---al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++||||+.+|... +.+ ....+|++++|+|+++. ........+..+.++|+++++||+|+..
T Consensus 45 lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 45 IVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred EEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 9999999887542 222 22468999999999873 2334445566778999999999999864
No 257
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.92 E-value=6.1e-09 Score=105.84 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=78.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
....|+++|+.|+|||||+.+++. |.... .+ ..|+........+. .
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~--~~~~~------~~----------~~t~~~~~~~~~~~----------------~ 53 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLT--GEFEK------KY----------IPTLGVEVHPLKFY----------------T 53 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHh--CCCCC------CC----------CCccceEEEEEEEE----------------E
Confidence 346899999999999999988754 22110 00 01222111222221 1
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHH---HHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQA---IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~---~~~~ip~iv~iNKiD~~~ 157 (755)
+.+...++++||||+.+|.......++.+|++++|+|.++....++...|..- ...++|++++.||+|+..
T Consensus 54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 12468999999999999977777778899999999999987765554444221 124689999999999853
No 258
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.92 E-value=4.2e-09 Score=103.26 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=74.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.+|+++|..++|||||+.+++. +... +.+ ..|+... ...+.+ +
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~----------~~~------~~t~~~~~~~~~~~------------------~ 45 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFP----------GEY------IPTVFDNYSANVMV------------------D 45 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCC----------CcC------CCcceeeeEEEEEE------------------C
Confidence 4689999999999999999864 1111 000 0111100 011111 1
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHH-HHH--cCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQ-AIA--ERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~-~~~--~~ip~iv~iNKiD~~ 156 (755)
+....++++||||..+|.......++.+|++|+|+|.++.-..+.. ..|.. ... .++|++++.||+|+.
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 46 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred CEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 2357889999999999988778888999999999999875444433 23422 222 258999999999985
No 259
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.92 E-value=2.8e-09 Score=104.27 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
++|+++|+.++|||||+.+++... ... . +. .|+... ...+.+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~--~~~----~--~~----------~t~~~~~~~~~~~~------------------ 45 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ--FPE----V--YV----------PTVFENYVADIEVD------------------ 45 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CCC----C--CC----------CccccceEEEEEEC------------------
Confidence 579999999999999999996421 110 0 00 011110 1112221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHH-HHHH--cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLR-QAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~-~~~~--~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||||+.+|.......++.+|++++|+|...-...... ..|. .... .++|++++.||+|+..
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 46 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred CEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 1346789999999998877666788899999999998753221111 2232 2222 3789999999999853
No 260
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.91 E-value=6.4e-09 Score=100.54 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=73.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..++|||||+.+++. +.... +....+........+... +.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~------------------~~ 47 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHS--------------SHISTIGVDFKMKTIEVD------------------GI 47 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCC--------------CCCCceeeEEEEEEEEEC------------------CE
Confidence 689999999999999999853 21110 000001111111112221 12
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
...++++||||..+|.......++.+|++++|+|.++.-.-+...-| ..... .++|++++.||+|+..
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 46789999999999988888899999999999998874332222222 22222 3579999999999853
No 261
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.90 E-value=6.2e-09 Score=105.84 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce-EEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA-ISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..|+++|..++|||||+.+++... ... ++. -|+.... ..+.+ +
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f~~---------~y~-------pTi~~~~~~~~~~------------------~ 45 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YPG---------SYV-------PTVFENYTASFEI------------------D 45 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC---------ccC-------CccccceEEEEEE------------------C
Confidence 468999999999999999995421 110 000 0111110 11111 1
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHH-HH--cCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQA-IA--ERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~-~~--~~ip~iv~iNKiD~~ 156 (755)
+....++|+||+|...|.......++.+|++|+|+|.++.-.-+.. ..|... .. .++|+|+|.||+|+.
T Consensus 46 ~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 46 KRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred CEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 2357899999999999988888889999999999999886433332 334322 22 367999999999985
No 262
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.90 E-value=8.7e-09 Score=103.21 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=77.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc--eEEEEeeeCccccccccCCCccccC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST--AISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.|+++|..++|||||+.+++.. . +.+. ...|+... ...+.+. + ...+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~--~----------f~~~------~~~Tig~~~~~k~~~~~--~-----------~~~~ 50 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKN--Q----------VLGR------PSWTVGCSVDVKHHTYK--E-----------GTPE 50 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--C----------CCCC------CCcceeeeEEEEEEEEc--C-----------CCCC
Confidence 5899999999999999999542 1 1110 01122111 1111221 0 0011
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH----------------------cCC
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA----------------------ERI 144 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~----------------------~~i 144 (755)
+..+.++|+||+|+.+|.......++.+|++|+|.|.+..-..+....|. .+.. .++
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI 130 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 23578999999999999888888899999999999999875544444442 2222 258
Q ss_pred ceEEEEeccchhh
Q psy16810 145 KPVLFMNKMDRAL 157 (755)
Q Consensus 145 p~iv~iNKiD~~~ 157 (755)
|+|++.||+|+..
T Consensus 131 PiilVGnK~Dl~~ 143 (202)
T cd04102 131 PLLVIGTKLDQIP 143 (202)
T ss_pred eEEEEEECccchh
Confidence 9999999999853
No 263
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.89 E-value=6.1e-09 Score=102.92 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=72.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|..++|||||+.+++.. .... ++.+ .-|..... ..+.. ++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~--~f~~---------~~~~---T~g~~~~~--~~i~~------------------~~~ 47 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEG--EFDE---------DYIQ---TLGVNFME--KTISI------------------RGT 47 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCC---------CCCC---ccceEEEE--EEEEE------------------CCE
Confidence 5899999999999999999642 1110 0000 01111110 11111 113
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~ 156 (755)
...++++||+|+..|..-....++.+|++++|+|.++....+...-| ..+.+ ..+| |++.||+|+.
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 57899999999999988888889999999999999875443332223 33333 2345 7889999985
No 264
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.89 E-value=8.1e-09 Score=101.99 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=77.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce-EEEEeeeCccccccccCCCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA-ISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.....|+++|..++|||||+.+++.. ... +.+ .-|+.... ..+..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~--~f~----------~~~------~pT~~~~~~~~~~~---------------- 48 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKD--CFP----------ENY------VPTVFENYTASFEI---------------- 48 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhC--CCC----------Ccc------CCceeeeeEEEEEE----------------
Confidence 34467999999999999999999642 111 000 01111100 01111
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHH-HHHH--cCCceEEEEeccchh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLR-QAIA--ERIKPVLFMNKMDRA 156 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~-~~~~--~~ip~iv~iNKiD~~ 156 (755)
++....+.++||+|...|..-....++.+|++|+|+|.++...-+.. ..|. .+.+ -+.|+++|.||+|+.
T Consensus 49 --~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 49 --DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred --CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 12357899999999999988778888999999999999876544442 3342 2332 257999999999984
No 265
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.89 E-value=4.2e-09 Score=97.80 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=69.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+.|.++|.+++|||||+++|....... .+| . .+.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~-----~KT------------------q--~i~~-------------------- 36 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY-----KKT------------------Q--AIEY-------------------- 36 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc-----Ccc------------------c--eeEe--------------------
Confidence 568999999999999999994321110 011 0 1223
Q ss_pred CCeEEEEEcCCCC----cccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGH----VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh----~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.=++|||||- ..|....+.....||.+++|.|+++....-.- ..+..++.|+|-||||+|+.
T Consensus 37 ---~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 37 ---YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred ---cccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCc
Confidence 1256999996 45667777777899999999999986432222 34566789999999999997
No 266
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.88 E-value=8.9e-09 Score=105.05 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=69.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|..|+|||||+.+++. +.... ..++ ...+. .....++.+. +.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~--~~~~~---------~~~~--~t~~~--~~~~~~i~~~------------------~~ 48 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDD---------HAYD--ASGDD--DTYERTVSVD------------------GE 48 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCcCc---------cCcC--CCccc--cceEEEEEEC------------------CE
Confidence 589999999999999999953 21110 0000 00000 0111112221 13
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhh-hcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALR-VTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~-~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
...++++||||+.++... ..++ .+|++++|+|+++....+. ...+..+.. .++|+|+|.||+|+..
T Consensus 49 ~~~l~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 49 ESTLVVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred EEEEEEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 578999999999844332 3556 8999999999988643332 223333333 3689999999999854
No 267
>KOG1191|consensus
Probab=98.87 E-value=7.8e-09 Score=111.47 Aligned_cols=114 Identities=22% Similarity=0.277 Sum_probs=85.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+.-.+|+|+|.+|+|||||+++|....-.|....+|+|| | +--+.+.+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTR--D-------------aiea~v~~---------------- 313 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTR--D-------------AIEAQVTV---------------- 313 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcch--h-------------hheeEeec----------------
Confidence 3445799999999999999999999988888888888876 2 11123333
Q ss_pred ccCCCCeEEEEEcCCCCcc---------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEecc
Q psy16810 85 AKNEKGFLINLIDSPGHVD---------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKM 153 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~d---------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKi 153 (755)
+++.+.|+||.|..+ -+.....++..+|.+++|||+.++...+...+.+.+...+.-+.+.+||+
T Consensus 314 ----~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 314 ----NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred ----CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 489999999999965 22345567889999999999999888887777777766654444444444
No 268
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.86 E-value=8.5e-09 Score=101.21 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|+.++|||||+.+++. |... +.+ -.|+.... ...+. .++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~----------~~~------~~Ti~~~~-~~~~~----------------~~~ 46 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFP----------TDY------IPTVFDNF-SANVS----------------VDG 46 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCC----------CCC------CCcceeee-EEEEE----------------ECC
Confidence 4699999999999999999854 2111 100 01221110 01111 112
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
...+++++||+|+.+|..-....++.+|++|+|.|.++--.-+.. ..| ..+.. .++|++++.||+|+..
T Consensus 47 ~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 47 NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 357899999999999998888899999999999999875544443 223 33332 3689999999999853
No 269
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.86 E-value=8.5e-09 Score=102.74 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+++|..++|||||+.+++.. ... +.+ -.|+... ....+. .++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~--~f~----------~~~------~~t~~~~-~~~~~~----------------~~~ 48 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTN--AFP----------KEY------IPTVFDN-YSAQTA----------------VDG 48 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhC--CCC----------cCC------CCceEee-eEEEEE----------------ECC
Confidence 57999999999999999999642 111 100 0122110 000111 112
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHH-HHH--cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQ-AIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~-~~~--~~ip~iv~iNKiD~~~ 157 (755)
..+.++++||||+..|..-....++.+|++|+|+|.++-..-+... .|.. ... .++|++++.||.|+..
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 3578999999999999887778889999999999998765444432 3432 222 4689999999999853
No 270
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.86 E-value=7.9e-09 Score=101.72 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=74.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce-EEEEeeeCccccccccCCCccccCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA-ISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.|+++|..++|||||+.+++... .. +. +. -|+.... ..+.+ ++
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~--f~----~~--~~----------~t~~~~~~~~~~~------------------~~ 46 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC--YP----ET--YV----------PTVFENYTASFEI------------------DE 46 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CC----CC--cC----------CceEEEEEEEEEE------------------CC
Confidence 68999999999999999995421 11 00 00 1111000 01111 12
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHH-HHHH--cCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLR-QAIA--ERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~-~~~~--~~ip~iv~iNKiD~~ 156 (755)
....++++||||+..|.......++.+|++|+|+|.++...-+. ..-|. .+.+ .++|+++|.||+|+.
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 35789999999999998777778899999999999987654443 23343 2333 367999999999985
No 271
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.85 E-value=1.8e-08 Score=103.54 Aligned_cols=98 Identities=24% Similarity=0.311 Sum_probs=63.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|.+++|||||+++|...... .+.. -+.|+......+.| +
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-----v~~~-----------~~tT~~~~~g~~~~--------------------~ 45 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-----VAAY-----------EFTTLTCVPGVLEY--------------------K 45 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-----ccCC-----------CCccccceEEEEEE--------------------C
Confidence 5899999999999999999543211 1110 01222222333344 3
Q ss_pred CeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCC
Q psy16810 90 GFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI 144 (755)
Q Consensus 90 ~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i 144 (755)
+..++++||||+.+ +..++...++.+|++++|+|++.... |-..+++.+...|+
T Consensus 46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi 106 (233)
T cd01896 46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGI 106 (233)
T ss_pred CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCc
Confidence 67899999999854 33467788999999999999976432 34444455544443
No 272
>KOG0084|consensus
Probab=98.84 E-value=1.8e-08 Score=96.43 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+..-.|.++|..|+|||-|+.|+ . .|.++++...-|-++-...++...
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf----------~------~~~f~e~~~sTIGVDf~~rt~e~~---------------- 54 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRF----------K------DDTFTESYISTIGVDFKIRTVELD---------------- 54 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhh----------c------cCCcchhhcceeeeEEEEEEeeec----------------
Confidence 34568899999999999999988 1 223334444444444444444442
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~iv~iNKiD~~~ 157 (755)
++..+++++||.|+..|...+.+..|.++|+|+|.|.+.--.-.....|.. +.+ .++|.++|-||.|+..
T Consensus 55 --gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 55 --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred --ceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 456799999999999999999999999999999999988555555545532 333 3579999999999865
No 273
>KOG0073|consensus
Probab=98.84 E-value=2.3e-08 Score=92.51 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.++--.|-|+|..||||||++.+|+... ......-.|..|+ ++.+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~---------------~~~i~pt~gf~Ik----tl~~---------------- 57 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED---------------TDTISPTLGFQIK----TLEY---------------- 57 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC---------------ccccCCccceeeE----EEEe----------------
Confidence 3445568899999999999999995432 1111223445444 4444
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHH----HHHHHcCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVL----RQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~----~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+++.+|++|..|...+..-..+....+|+.|.|||+++.- ..++...+ ..-+..|.|++++.||.|..+
T Consensus 58 ----~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 58 ----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred ----cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 4899999999999999999999999999999999997654 22333333 223445789999999999975
No 274
>PLN00023 GTP-binding protein; Provisional
Probab=98.83 E-value=1.4e-08 Score=106.89 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=77.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
...|+++|+.++|||||+.+++.. ... ... ...-|.+... ..+.|.......... ....
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g--~F~----------~~~--~pTIG~d~~i--k~I~~~~~~~~~~~i-----k~d~ 79 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKG--SSI----------ARP--PQTIGCTVGV--KHITYGSPGSSSNSI-----KGDS 79 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcC--Ccc----------ccc--CCceeeeEEE--EEEEECCcccccccc-----cccC
Confidence 467999999999999999999542 111 000 0011122111 112221000000000 0001
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---------------CCceEEEEe
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---------------RIKPVLFMN 151 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---------------~ip~iv~iN 151 (755)
...+.++|+||+|+..|..-....++.+|++|+|+|.+.--......-| ..+... ++|++||.|
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 2357899999999999998888889999999999998874433332223 233332 379999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|+|+..
T Consensus 160 K~DL~~ 165 (334)
T PLN00023 160 KADIAP 165 (334)
T ss_pred Cccccc
Confidence 999853
No 275
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.81 E-value=1.6e-08 Score=101.31 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=69.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|..|+|||||+++|+..... ..|... ... ...|... . .|. ..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~----~~~~~~-~~~------~~~t~~~--~--~~~-----------------~~ 49 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE----EEGAAP-TGV------VETTMKR--T--PYP-----------------HP 49 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC----CCCccc-cCc------cccccCc--e--eee-----------------cC
Confidence 36999999999999999999652210 011100 000 0011110 0 111 00
Q ss_pred CCeEEEEEcCCCCcccHH---HHHH--HhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSS---EVTA--ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~---~~~~--al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
....+.++||||..+... +... .+..+|.+++|.| +.........++.+...+.|+++|+||+|+..
T Consensus 50 ~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 50 KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 134689999999865322 2111 2456788777754 34555556677788888999999999999953
No 276
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.81 E-value=3.7e-08 Score=100.62 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=53.7
Q ss_pred CeEEEEEcCCCCccc-------------HHHHHHHhh-hcCcEEEEEcCCCcceehH-HHHHHHHHHcCCceEEEEeccc
Q psy16810 90 GFLINLIDSPGHVDF-------------SSEVTAALR-VTDGALVVVDCVSGVCVQT-ETVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 90 ~~~i~lIDtPGh~df-------------~~~~~~al~-~~D~ailVvda~~g~~~qt-~~~~~~~~~~~ip~iv~iNKiD 154 (755)
-..++||||||..+. ...+..+++ ..+.+++|+|+..++..+. .++.+.+...+.|.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 357999999999632 123555666 4468999999999998887 5777888889999999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
...
T Consensus 204 ~~~ 206 (240)
T smart00053 204 LMD 206 (240)
T ss_pred CCC
Confidence 863
No 277
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.80 E-value=2.2e-08 Score=112.93 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=81.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..||++|++|+|||||.++|....- ..|+. -|.|++.....+.++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-----~VgNw-----------pGvTVEkkeg~~~~~------------------- 48 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-----KVGNW-----------PGVTVEKKEGKLKYK------------------- 48 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-----eecCC-----------CCeeEEEEEEEEEec-------------------
Confidence 3499999999999999999944322 23332 278888888888775
Q ss_pred CCeEEEEEcCCCCcccHH----H-H-HHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSS----E-V-TAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~----~-~-~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++.+.+||.||--.+.. | + ...+ ...|.+|-||||+. -......--|+.++|+|+++++|++|...
T Consensus 49 -~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~ 122 (653)
T COG0370 49 -GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAK 122 (653)
T ss_pred -CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHH
Confidence 78899999999855431 1 1 2222 35699999999976 33344445578899999999999999864
No 278
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.79 E-value=2.7e-08 Score=101.72 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=75.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+++|..++|||+|+.+++.. ... +.+ .-|+.... ..... .++
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~--~F~----------~~y------~pTi~~~~-~~~i~----------------~~~ 58 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKD--CYP----------ETY------VPTVFENY-TAGLE----------------TEE 58 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcC--CCC----------CCc------CCceeeee-EEEEE----------------ECC
Confidence 47899999999999999998542 111 100 01111100 00111 112
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHH-HHHH--cCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLR-QAIA--ERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~-~~~~--~~ip~iv~iNKiD~~ 156 (755)
....++|+||||..+|.......++.+|++|+|+|.++.-..+. ...|. .+.+ .++|+|+|.||+|+.
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 35789999999999998878888999999999999987655443 23343 2332 367999999999974
No 279
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.76 E-value=7.3e-08 Score=92.86 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=79.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|+++|..++|||||+.+|.... ... . +.+ ..|. ......+.. +..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~~----~-----~~~---t~~~--~~~~~~~~~------------------~~~ 46 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FPE----N-----YIP---TIGI--DSYSKEVSI------------------DGK 46 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TTS----S-----SET---TSSE--EEEEEEEEE------------------TTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--ccc----c-----ccc---cccc--ccccccccc------------------ccc
Confidence 38999999999999999986421 110 0 000 0011 111111111 124
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HHH-c--CCceEEEEeccchhhhcccCCHH
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AIA-E--RIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~-~--~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
.+.+.++|+||+..|.......++.+|++|+|.|.++.-.-+....|.. ... . ..|++++.||.|+.. +..++.+
T Consensus 47 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~ 125 (162)
T PF00071_consen 47 PVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVE 125 (162)
T ss_dssp EEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccchhh
Confidence 6789999999999998877888999999999999987654444334432 222 2 478899999999875 2345555
Q ss_pred HH
Q psy16810 166 DL 167 (755)
Q Consensus 166 ~~ 167 (755)
++
T Consensus 126 ~~ 127 (162)
T PF00071_consen 126 EA 127 (162)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 280
>KOG1532|consensus
Probab=98.74 E-value=3.6e-09 Score=105.63 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=100.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc------cc--------Cc---------ccccCCchhhhhhccccccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA------KA--------GE---------TRFTDTRKDEQERCITIKST 62 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~------~~--------g~---------~~~~d~~~~E~~rgiTi~~~ 62 (755)
++...|.++|..||||||++.+|......-..+ .+ -+ ..+|..+..-...||+...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 445678899999999999999997655432210 00 00 00133333444555655444
Q ss_pred eEEEEeeeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhc--------CcEEEEEcCCCcceehHH-
Q psy16810 63 AISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVT--------DGALVVVDCVSGVCVQTE- 133 (755)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~--------D~ailVvda~~g~~~qt~- 133 (755)
.....|. ....+. .+....+.+.+|||||+.+-..+..++.-.. -.++.|||....-.+.|-
T Consensus 97 LF~tk~d---qv~~~i------ek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM 167 (366)
T KOG1532|consen 97 LFATKFD---QVIELI------EKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM 167 (366)
T ss_pred HHHHHHH---HHHHHH------HHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH
Confidence 3332221 000011 1122356789999999987544333332222 246888998877666552
Q ss_pred ----HHHHHHHHcCCceEEEEeccchhhhcccCCHHHHHHHHHHHhhh
Q psy16810 134 ----TVLRQAIAERIKPVLFMNKMDRALLELQLDAEDLYQTFQRIVEN 177 (755)
Q Consensus 134 ----~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~~~~~~~~ii~~ 177 (755)
.....+.+.++|.|++.||.|....+|-..|..-+..|+..++.
T Consensus 168 SNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~ 215 (366)
T KOG1532|consen 168 SNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNE 215 (366)
T ss_pred HHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHh
Confidence 33456678899999999999999988888887777777776664
No 281
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.73 E-value=1.5e-07 Score=97.21 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
....||+++|.+|+|||||+++|+...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 346899999999999999999997653
No 282
>KOG1489|consensus
Probab=98.71 E-value=9.2e-08 Score=97.95 Aligned_cols=111 Identities=23% Similarity=0.322 Sum_probs=74.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
.|-+|+++|-+|+|||||+++|....- +.+...++ |+........|.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp-----kVa~YaFT-----------TL~P~iG~v~yd----------------- 241 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKP-----KVAHYAFT-----------TLRPHIGTVNYD----------------- 241 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCC-----ccccccee-----------eeccccceeecc-----------------
Confidence 467899999999999999999954322 22333322 344444444443
Q ss_pred CCCCeEEEEEcCCCCc-----------ccHHHHHHHhhhcCcEEEEEcCCCc---c-eehHHHHHHHHHHcC-----Cce
Q psy16810 87 NEKGFLINLIDSPGHV-----------DFSSEVTAALRVTDGALVVVDCVSG---V-CVQTETVLRQAIAER-----IKP 146 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~-----------df~~~~~~al~~~D~ailVvda~~g---~-~~qt~~~~~~~~~~~-----ip~ 146 (755)
+..++++-|.||.+ +|.+.++ -|+..++|||.+.+ - -.|-..+|..+..+. .|.
T Consensus 242 --df~q~tVADiPGiI~GAh~nkGlG~~FLrHiE----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~ 315 (366)
T KOG1489|consen 242 --DFSQITVADIPGIIEGAHMNKGLGYKFLRHIE----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPA 315 (366)
T ss_pred --ccceeEeccCccccccccccCcccHHHHHHHH----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCce
Confidence 23459999999985 4555554 46899999999987 2 233344555554443 489
Q ss_pred EEEEeccchh
Q psy16810 147 VLFMNKMDRA 156 (755)
Q Consensus 147 iv~iNKiD~~ 156 (755)
++|+||||.+
T Consensus 316 liVaNKiD~~ 325 (366)
T KOG1489|consen 316 LIVANKIDLP 325 (366)
T ss_pred EEEEeccCch
Confidence 9999999985
No 283
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.68 E-value=7.6e-08 Score=97.89 Aligned_cols=115 Identities=23% Similarity=0.177 Sum_probs=77.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+++|..|+|||||+.+|....-.. + ...|+-......... ...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~----------------~--~~~t~~~~~~~~~~~----------------~~~ 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE----------------G--YPPTIGNLDPAKTIE----------------PYR 51 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc----------------c--CCCceeeeeEEEEEE----------------eCC
Confidence 789999999999999999995421100 0 011221111111111 001
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCC--cceehHHHHHHHHHHc---CCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS--GVCVQTETVLRQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~--g~~~qt~~~~~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
...++.++||+|+.+|..-+....+.++++++|+|... ....-++.....+... +.|++++.||+|+..
T Consensus 52 ~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 52 RNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred CEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 14678999999999999888899999999999999885 3333444444444443 489999999999965
No 284
>PRK09866 hypothetical protein; Provisional
Probab=98.68 E-value=7.2e-08 Score=108.32 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=57.8
Q ss_pred CeEEEEEcCCCCcc-----cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC--CceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVD-----FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--IKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~d-----f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~--ip~iv~iNKiD~~ 156 (755)
..++.||||||.-. +...+..++..+|.+++|||+..+.....+.+++.+.+.+ .|+++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 46899999999843 4556778999999999999999988888888888888888 4999999999984
No 285
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.67 E-value=6.3e-08 Score=96.10 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce-EEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA-ISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..|+++|..|+|||||+.+|.. |.... +. ..|+.... ..+.+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~--------------~~--~~t~~~~~~~~~~~~------------------ 45 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPE--------------EY--HPTVFENYVTDCRVD------------------ 45 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCc--------------cc--CCcccceEEEEEEEC------------------
Confidence 4799999999999999999953 11110 00 00111110 011111
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+.+|.......++.+|++++|.|....-..+.. ..| ..+.. ..+|++++.||+|+..
T Consensus 46 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 46 GKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred CEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 1245688999999988765544567899999999998764332222 123 22222 2589999999999853
No 286
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.61 E-value=2.9e-08 Score=82.54 Aligned_cols=74 Identities=31% Similarity=0.531 Sum_probs=59.0
Q ss_pred CceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceee
Q psy16810 305 GRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTIT 383 (755)
Q Consensus 305 G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~ 383 (755)
|. ++++||+||+|++||+|++++ +.+. ++. ...+|.+++.+++...+++..+.||+++++.++++....++|||
T Consensus 1 G~-v~~grV~sG~l~~gd~v~~~~-~~~~-~~~--~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GR-VATGRVYSGTLKKGDKVRVLP-NGTG-KKG--QVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EE-EEEEEEEESEEETTEEEEEES-TTTT-EEC--EEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CE-EEEEEEEEeEEcCCCEEEECc-cCCc-cee--eeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 44 899999999999999999876 3322 221 12379999999999999999999999999999988324566875
No 287
>KOG0394|consensus
Probab=98.60 E-value=2.1e-07 Score=88.00 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=83.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
...-.|.|+|.+|+|||+|++++.+.. + .+....||..-..+-.+.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~k------------F------~~qykaTIgadFltKev~---------------- 52 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKK------------F------SQQYKATIGADFLTKEVQ---------------- 52 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHH------------H------HHHhccccchhheeeEEE----------------
Confidence 446789999999999999999996531 1 111223443322222221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-----HHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-----QAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-----~~~~---~~ip~iv~iNKiD~~~ 157 (755)
.+.....+.++||.|.+.|-+--..-.|.+|.+++|.|....-.-.+...|+ +|.- ...|.||+-||+|...
T Consensus 53 Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 53 VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 1224678899999999999888888889999999999988766666665664 3321 2359999999999975
No 288
>COG2262 HflX GTPases [General function prediction only]
Probab=98.60 E-value=1.6e-07 Score=100.16 Aligned_cols=117 Identities=23% Similarity=0.240 Sum_probs=80.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
..+..|+++|-.|+|||||.++|....-... |..- -|.+.+.-.+.+.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~----------d~LF------ATLdpttR~~~l~---------------- 237 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVA----------DQLF------ATLDPTTRRIELG---------------- 237 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecc----------cccc------ccccCceeEEEeC----------------
Confidence 3578999999999999999999952211111 1000 1444444445553
Q ss_pred cCCCCeEEEEEcCCCCcc--------cHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHH---cCCceEEEEecc
Q psy16810 86 KNEKGFLINLIDSPGHVD--------FSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIA---ERIKPVLFMNKM 153 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~d--------f~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~---~~ip~iv~iNKi 153 (755)
++..+.|-||=|+++ -++.+......+|..+.|||+++.- ..|-+.+.+.+.+ ..+|+|++.||+
T Consensus 238 ---~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKi 314 (411)
T COG2262 238 ---DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKI 314 (411)
T ss_pred ---CCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecc
Confidence 468899999999953 3345556667899999999999863 3444455555555 456999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 315 D~~~ 318 (411)
T COG2262 315 DLLE 318 (411)
T ss_pred cccC
Confidence 9853
No 289
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.60 E-value=3.6e-07 Score=92.82 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=72.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|.++|+.++||||....+.+.... ..|.+ -|.|++.....+.+. .
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p------~dT~~---------L~~T~~ve~~~v~~~-------------------~ 46 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP------RDTLR---------LEPTIDVEKSHVRFL-------------------S 46 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G------GGGGG--------------SEEEEEEECT-------------------T
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc------hhccc---------cCCcCCceEEEEecC-------------------C
Confidence 3789999999999999888543221 11211 134555444444432 3
Q ss_pred CeEEEEEcCCCCcccHHH-----HHHHhhhcCcEEEEEcCC-Cccee---hHHHHHHHHHHc--CCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSE-----VTAALRVTDGALVVVDCV-SGVCV---QTETVLRQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~-----~~~al~~~D~ailVvda~-~g~~~---qt~~~~~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
...++++|+||+.+|... ...-++.+++.|+|+|+. +.... .-...+..+.+. ++++.|+|.|||...
T Consensus 47 ~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 47 FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred CcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 568999999999988775 466789999999999998 33221 223445556555 468899999999853
No 290
>KOG0080|consensus
Probab=98.59 E-value=1.1e-07 Score=87.56 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=79.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
...|.++|..|+|||+|+-++...+ +-|.++. .-|+-.+..... .+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~------------fd~~~~~--tIGvDFkvk~m~--------------------vd 56 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT------------FDDLHPT--TIGVDFKVKVMQ--------------------VD 56 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc------------cCccCCc--eeeeeEEEEEEE--------------------Ec
Confidence 4689999999999999998884421 1111110 011111111111 23
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHH-HHc----CCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQA-IAE----RIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~-~~~----~ip~iv~iNKiD~~~ 157 (755)
++..++.++||+|+..|..-+.+..|.+.|+|+|.|.+.--.-.-..+|..- ..+ ++-.++|-||+|+..
T Consensus 57 g~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 57 GKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred CceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 4678999999999999999999999999999999999876555555666432 222 345578999999864
No 291
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.59 E-value=1.8e-07 Score=90.11 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=68.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|..|+|||||+.+++.. .... +..+ +...-...+.+. +.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~--~f~~---------~~~~-------~~~~~~~~i~~~------------------~~ 45 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTG--SYVQ---------LESP-------EGGRFKKEVLVD------------------GQ 45 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCC---------CCCC-------CccceEEEEEEC------------------CE
Confidence 6899999999999999998542 1110 0000 000000112221 12
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~ 156 (755)
...+.++||+|..+. ...+.+|++++|+|.++--.-+. ...+..+.. .++|++++.||+|+.
T Consensus 46 ~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 46 SHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 467999999999752 34578999999999998665555 333344433 347999999999974
No 292
>KOG0070|consensus
Probab=98.58 E-value=1.4e-07 Score=89.77 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=87.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+-..|.++|--+|||||++-.| ..|.+. .+ --||-..+-.+.|+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykL--k~~E~v--------tt---------vPTiGfnVE~v~yk----------------- 59 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKL--KLGEIV--------TT---------VPTIGFNVETVEYK----------------- 59 (181)
T ss_pred ceEEEEEEeccCCCceeeeEee--ccCCcc--------cC---------CCccccceeEEEEc-----------------
Confidence 4578999999999999999887 222211 01 12444455556663
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc--eehHHHHHHHHHH---cCCceEEEEeccchhhhccc
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV--CVQTETVLRQAIA---ERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~--~~qt~~~~~~~~~---~~ip~iv~iNKiD~~~~~~~ 161 (755)
+..++++|.-|+..+..-.....+..+++|+|||+++-. ...-+++.+.... .+.|++++.||.|..++
T Consensus 60 ---n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--- 133 (181)
T KOG0070|consen 60 ---NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--- 133 (181)
T ss_pred ---ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc---
Confidence 789999999999999999999999999999999998743 2222233344333 36799999999999874
Q ss_pred CCHHHHHHH
Q psy16810 162 LDAEDLYQT 170 (755)
Q Consensus 162 ~~~~~~~~~ 170 (755)
++..++.+.
T Consensus 134 ls~~ei~~~ 142 (181)
T KOG0070|consen 134 LSAAEITNK 142 (181)
T ss_pred CCHHHHHhH
Confidence 555555443
No 293
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.57 E-value=1.6e-07 Score=91.21 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=46.4
Q ss_pred CeEEEEEcCCCCcccH----HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCC-ceEEEEecc
Q psy16810 90 GFLINLIDSPGHVDFS----SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI-KPVLFMNKM 153 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~----~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-p~iv~iNKi 153 (755)
...+.||||||..+.. ..+...+..+|.+|+|+++......+....|.+...... ..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4568999999995422 446777899999999999999777665555555555444 567778885
No 294
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.55 E-value=3.3e-07 Score=92.74 Aligned_cols=115 Identities=21% Similarity=0.186 Sum_probs=82.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccc-cccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG-AKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
..-||-|+|..|+|||||+++|+........ ...|+ |-... .|.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t----~~~~~---------------~~~---------------- 82 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGT----DITTR---------------LRL---------------- 82 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCC----Cchhh---------------HHh----------------
Confidence 4568889999999999999999753332211 11111 10000 010
Q ss_pred cCCCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC--CceEEEEeccchh
Q psy16810 86 KNEKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--IKPVLFMNKMDRA 156 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~--ip~iv~iNKiD~~ 156 (755)
..+++.++|+||||..| +.......|...|.+++++++.+.--...+..|+.....+ .|++++||..|+.
T Consensus 83 -~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 83 -SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred -hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 11367899999999977 6666777888999999999999988777888888776554 5889999999996
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 162 ~ 162 (296)
T COG3596 162 E 162 (296)
T ss_pred c
Confidence 4
No 295
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.53 E-value=4.4e-07 Score=90.68 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHH-HHHH--cCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLR-QAIA--ERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~-~~~~--~~ip~iv~iNKiD~~ 156 (755)
..+.++|+||+|..++. ....++.+|++|+|.|.++.-.-+.. ..|. .+.. .++|++++.||+|+.
T Consensus 64 ~~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 64 VSVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred EEEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 46889999999997643 33467899999999999875443333 2342 2322 367999999999985
No 296
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.52 E-value=6.3e-07 Score=95.99 Aligned_cols=131 Identities=17% Similarity=0.202 Sum_probs=80.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCC--ccccccCcccccCCchhhhhhcccc---ccce---EEEEeeeCcccccccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGI--IAGAKAGETRFTDTRKDEQERCITI---KSTA---ISMYFELDDKDMVFIT 79 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~--i~~~~~g~~~~~d~~~~E~~rgiTi---~~~~---~~~~~~~~~~~~~~~~ 79 (755)
-..||++|++++|||||++++....-. +.+ ...+.|..|..+... .|-|| .... -.+...
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~-~~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~---------- 84 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISN-EYDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEIN---------- 84 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccc-hhHHhHHHhccCcCC-CCCCcccCCCccccCcceEEe----------
Confidence 367999999999999999999765211 110 000111122222111 13222 2111 001110
Q ss_pred CCCccccCCCCeEEEEEcCCCCcc-------------------------cHHH----HHHHhh-hcCcEEEEE-cCC---
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVD-------------------------FSSE----VTAALR-VTDGALVVV-DCV--- 125 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~d-------------------------f~~~----~~~al~-~~D~ailVv-da~--- 125 (755)
..++-...+.||||+|+.+ |... +...+. -+|.+|+|. |++
T Consensus 85 -----~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~d 159 (492)
T TIGR02836 85 -----INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITD 159 (492)
T ss_pred -----ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccc
Confidence 1112346899999999943 1111 455666 889999999 886
Q ss_pred ---CcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 126 ---SGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 126 ---~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
++....-++++..+++.++|+++++||.|-
T Consensus 160 I~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 160 IPREDYVEAEERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred cccccchHHHHHHHHHHHhcCCCEEEEEECcCC
Confidence 556666778889999999999999999994
No 297
>KOG0090|consensus
Probab=98.50 E-value=3.3e-07 Score=88.88 Aligned_cols=127 Identities=19% Similarity=0.272 Sum_probs=83.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-+.|-++|..|||||+|.-.|.+.+ ..++ + .+|..+...+.+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs------~~~T--v-----------tSiepn~a~~r~------------------- 79 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGS------HRGT--V-----------TSIEPNEATYRL------------------- 79 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCC------ccCe--e-----------eeeccceeeEee-------------------
Confidence 3788999999999999998885431 1111 1 234444444433
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhh---hcCcEEEEEcCCCcce---ehHHHH---HHHH--HHcCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALR---VTDGALVVVDCVSGVC---VQTETV---LRQA--IAERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~---~~D~ailVvda~~g~~---~qt~~~---~~~~--~~~~ip~iv~iNKiD~~ 156 (755)
++...+|||-|||.........-+. .+-++|+|||+..-.. ...+.+ +..+ ...++|++++.||-|+.
T Consensus 80 -gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 80 -GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred -cCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 2445899999999998888877776 7889999999876331 122222 2222 24567889999999997
Q ss_pred hhcccCCHHHHHHHHHHHhh
Q psy16810 157 LLELQLDAEDLYQTFQRIVE 176 (755)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ii~ 176 (755)
-+ -+.+-+++.++.-+.
T Consensus 159 tA---kt~~~Ir~~LEkEi~ 175 (238)
T KOG0090|consen 159 TA---KTAEKIRQQLEKEIH 175 (238)
T ss_pred hc---CcHHHHHHHHHHHHH
Confidence 64 244445555544433
No 298
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=4e-07 Score=98.66 Aligned_cols=107 Identities=28% Similarity=0.347 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-.+|++|++|.|||||+.+|+.. ++.+.-.+...-||+.+ +
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr-------------~tk~ti~~i~GPiTvvs--------------------------g 110 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRR-------------FTKQTIDEIRGPITVVS--------------------------G 110 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHH-------------HHHhhhhccCCceEEee--------------------------c
Confidence 46789999999999999999642 22222233333355432 3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEE-EEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVL-FMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv-~iNKiD~~~ 157 (755)
+..+|+|+.||. | ...++.....+|.++|+||++-|.+-.|.+.+..+...|+|+++ |++-+|+..
T Consensus 111 K~RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 111 KTRRITFLECPS--D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred ceeEEEEEeChH--H-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 578999999993 4 35778888999999999999999999999999999999999965 899999864
No 299
>KOG0075|consensus
Probab=98.45 E-value=2.9e-07 Score=83.54 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=77.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
-+.++|-.+|||||+++... +|... .++ =+.+|..+. .+ +.+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia--~g~~~-------edm-----iptvGfnmr------k~------------------tkg 63 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIA--RGQYL-------EDM-----IPTVGFNMR------KV------------------TKG 63 (186)
T ss_pred eEEEEeeccCCcceEEEEEe--eccch-------hhh-----cccccceeE------Ee------------------ccC
Confidence 46899999999999998762 22111 000 112333221 11 225
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc--eeh---HHHHHHHHHHcCCceEEEEeccchhhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV--CVQ---TETVLRQAIAERIKPVLFMNKMDRALL 158 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~--~~q---t~~~~~~~~~~~ip~iv~iNKiD~~~~ 158 (755)
...+-++|.||...|.....+..|.+|+.+.||||.+.- ... ...++......++|++|.-||+|+.++
T Consensus 64 nvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 64 NVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred ceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 678999999999999999999999999999999998732 111 122333345568999999999999874
No 300
>KOG0078|consensus
Probab=98.45 E-value=8.9e-07 Score=86.25 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=82.8
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
..+..-.|.++|..++|||.++.++...+= ... ..+.+.+.|.....
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f------------~~~-----------~~sTiGIDFk~kti---------- 54 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSF------------NTS-----------FISTIGIDFKIKTI---------- 54 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccC------------cCC-----------ccceEEEEEEEEEE----------
Confidence 345677899999999999999998843211 100 01112222221000
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
.-++....+.+|||.|...|..-+.+.+|.|+++++|+|.+....-....-|.-.. ..++|.++|-||+|...
T Consensus 55 -~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 55 -ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred -EeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 01224678999999999999999999999999999999998866555544453332 23689999999999864
No 301
>KOG0092|consensus
Probab=98.43 E-value=4.8e-07 Score=86.47 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=82.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..-.|+++|..++|||||+.|+.. +..+ ++ .--||-.+..+-.+...
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk--~~F~----------e~------~e~TIGaaF~tktv~~~--------------- 50 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVK--DQFH----------EN------IEPTIGAAFLTKTVTVD--------------- 50 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhh--Cccc----------cc------cccccccEEEEEEEEeC---------------
Confidence 345789999999999999999833 1111 11 11355555555444311
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCC-c---eEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI-K---PVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-p---~iv~iNKiD~~~ 157 (755)
....++-++||.|...|.+-.--..|.+++||+|.|.++--.-+...-|-.=.+... | +.++-||+|+..
T Consensus 51 -~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 51 -DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred -CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 135788899999999999888889999999999999998766666665543333333 3 245899999975
No 302
>KOG0098|consensus
Probab=98.41 E-value=9.9e-07 Score=83.60 Aligned_cols=116 Identities=23% Similarity=0.256 Sum_probs=77.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
...+.|+|..|+|||.|+-++.... + .++....+.+.|.... ...+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~kr------------F-----------~~~hd~TiGvefg~r~-----------~~id 51 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKR------------F-----------QPVHDLTIGVEFGARM-----------VTID 51 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccC------------c-----------cccccceeeeeeceeE-----------EEEc
Confidence 4567899999999999998873311 1 0111111222221000 1122
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
.+..+++++||.||+.|..-+.+..+.+-|||||.|...--.-.....| .-+++ .++-++++-||+|+..
T Consensus 52 ~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 52 GKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred CceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 3578899999999999999999999999999999998764433333333 33343 3567788899999975
No 303
>KOG0094|consensus
Probab=98.41 E-value=2.1e-06 Score=82.13 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=81.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+.-.++++|..++|||||+.+++|..- ++ .| +-||-....+..+.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~f--d~------~Y----------qATIGiDFlskt~~---------------- 65 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKF--DN------TY----------QATIGIDFLSKTMY---------------- 65 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhh--cc------cc----------cceeeeEEEEEEEE----------------
Confidence 3446899999999999999999988531 10 00 11232222222221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-ceehHHHHHHHHHHcC----CceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-VCVQTETVLRQAIAER----IKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~----ip~iv~iNKiD~~~ 157 (755)
.++..+.+.|+||.|++.|..-+.+.+|.+..||+|.|.++- -..+|..-+.-+...+ +-+++|-||-|+..
T Consensus 66 l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 66 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred EcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 112468999999999999999999999999999999998764 3455555555555443 23466889999964
No 304
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.37 E-value=3.3e-06 Score=88.73 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=65.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|..|+||||++++|+...-...+...+ -|.........+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s---------------~t~~~~~~~~~~------------------ 83 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS---------------EGLRPMMVSRTR------------------ 83 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC---------------cceeEEEEEEEE------------------
Confidence 45789999999999999999997543222111000 011111122222
Q ss_pred CCCCeEEEEEcCCCCcccHH---HHHHHhh------hcCcEEEEEcCCC-cceehHHHHHHHHHH-cC----CceEEEEe
Q psy16810 87 NEKGFLINLIDSPGHVDFSS---EVTAALR------VTDGALVVVDCVS-GVCVQTETVLRQAIA-ER----IKPVLFMN 151 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~---~~~~al~------~~D~ailVvda~~-g~~~qt~~~~~~~~~-~~----ip~iv~iN 151 (755)
++..+++|||||..+... +....++ ..|++++|..... ......+.+++.... +| .+.|+++|
T Consensus 84 --~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfT 161 (313)
T TIGR00991 84 --AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLT 161 (313)
T ss_pred --CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEE
Confidence 378999999999987521 2222222 3677888843321 222233334443322 22 36788888
Q ss_pred ccchh
Q psy16810 152 KMDRA 156 (755)
Q Consensus 152 KiD~~ 156 (755)
+.|..
T Consensus 162 h~d~~ 166 (313)
T TIGR00991 162 HAQFS 166 (313)
T ss_pred CCccC
Confidence 88864
No 305
>PRK13768 GTPase; Provisional
Probab=98.33 E-value=8e-07 Score=92.43 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCcccHH---H---HHHHhhh--cCcEEEEEcCCCcceehHHHHHHHH-----HHcCCceEEEEeccchhh
Q psy16810 91 FLINLIDSPGHVDFSS---E---VTAALRV--TDGALVVVDCVSGVCVQTETVLRQA-----IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~---~---~~~al~~--~D~ailVvda~~g~~~qt~~~~~~~-----~~~~ip~iv~iNKiD~~~ 157 (755)
..+.+|||||..++.. . ..+.+.. +|++++|+|+..+..+.+....... ...++|+++++||+|...
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 4688999999877532 2 2222333 8999999999887766654332222 267899999999999864
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.32 E-value=1.9e-07 Score=95.87 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcccHHHHHHHh------hh--cCcEEEEEcCCCcceehH-----HHHHHHHHHcCCceEEEEeccchhh
Q psy16810 92 LINLIDSPGHVDFSSEVTAAL------RV--TDGALVVVDCVSGVCVQT-----ETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 92 ~i~lIDtPGh~df~~~~~~al------~~--~D~ailVvda~~g~~~qt-----~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.+.++||||+.+|.......- .. .=++|+++|+..-..+.. ...+....++++|.|.++||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 678999999988765443333 22 226788899875433222 1122334568999999999999965
No 307
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.31 E-value=2.4e-06 Score=88.14 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=82.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.-.|+++|.+.+|||||++.|..... +.+...|+ |...-...+.|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s-----eva~y~FT-----------Tl~~VPG~l~Y------------------- 107 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS-----EVADYPFT-----------TLEPVPGMLEY------------------- 107 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc-----cccccCce-----------ecccccceEee-------------------
Confidence 35799999999999999999944322 22222222 33334445566
Q ss_pred CCCeEEEEEcCCCCccc-------HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCC-----ceEEEEeccch
Q psy16810 88 EKGFLINLIDSPGHVDF-------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI-----KPVLFMNKMDR 155 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df-------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-----p~iv~iNKiD~ 155 (755)
++.+|+++|+||...= -+++.+.+|.||.+++|+|+.+.... -..+.+.+...|+ |.=+.|.|-++
T Consensus 108 -~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~ 185 (365)
T COG1163 108 -KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKES 185 (365)
T ss_pred -cCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEecc
Confidence 4889999999998532 25788999999999999999876543 4456677777765 67778888777
Q ss_pred hhhcc
Q psy16810 156 ALLEL 160 (755)
Q Consensus 156 ~~~~~ 160 (755)
-+.++
T Consensus 186 gGI~i 190 (365)
T COG1163 186 GGIRI 190 (365)
T ss_pred CCEEE
Confidence 66443
No 308
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.31 E-value=2.8e-06 Score=92.12 Aligned_cols=135 Identities=20% Similarity=0.153 Sum_probs=80.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCcc-ccccCcccccCCc---hhhhhh------ccccccceEEEEeeeCcccccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIA-GAKAGETRFTDTR---KDEQER------CITIKSTAISMYFELDDKDMVF 77 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~d~~---~~E~~r------giTi~~~~~~~~~~~~~~~~~~ 77 (755)
-.+++++|++|+||||++..|....-... ....+ ....|.+ ..|+-+ |+.+......-.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l--------- 206 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL--------- 206 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCCcccH---------
Confidence 47999999999999999999976421100 00001 0112332 233333 3322211000000
Q ss_pred ccCCCccccCCCCeEEEEEcCCCCc---ccHHHHHHHhhhcCcE---EEEEcCCCcceehHHHHHHHHHHcCCce-----
Q psy16810 78 ITNPDQTAKNEKGFLINLIDSPGHV---DFSSEVTAALRVTDGA---LVVVDCVSGVCVQTETVLRQAIAERIKP----- 146 (755)
Q Consensus 78 ~~~~~~~~~~~~~~~i~lIDtPGh~---df~~~~~~al~~~D~a---ilVvda~~g~~~qt~~~~~~~~~~~ip~----- 146 (755)
........++.+.||||||.. ++..+....+..++.. +||++++.+....+..++......++|.
T Consensus 207 ----~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~ 282 (374)
T PRK14722 207 ----QLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPD 282 (374)
T ss_pred ----HHHHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCC
Confidence 000111236788999999987 5556666666655544 9999999988887777777766655433
Q ss_pred --EEEEeccchh
Q psy16810 147 --VLFMNKMDRA 156 (755)
Q Consensus 147 --iv~iNKiD~~ 156 (755)
=++++|+|-.
T Consensus 283 ~~~~I~TKlDEt 294 (374)
T PRK14722 283 LAGCILTKLDEA 294 (374)
T ss_pred CCEEEEeccccC
Confidence 4678999975
No 309
>KOG0079|consensus
Probab=98.30 E-value=1.7e-06 Score=78.56 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=58.3
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC---CceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~---ip~iv~iNKiD~~~ 157 (755)
+...++.++||.|...|..-+....+...++++|.|.+.|-.-....-|.+-.+.+ +|.++|-||.|.+.
T Consensus 54 G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 54 GDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred CcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 46789999999999999988989999999999999999987766655554444433 58899999999875
No 310
>KOG0074|consensus
Probab=98.28 E-value=4.5e-06 Score=75.38 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=80.3
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
+.+-..|.++|--++||||++..|-... -...-+..|++++ ++.+.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED---------------~~hltpT~GFn~k----~v~~~--------------- 59 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSED---------------PRHLTPTNGFNTK----KVEYD--------------- 59 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCC---------------hhhccccCCcceE----EEeec---------------
Confidence 3455678999999999999999983211 0111122344443 34443
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc--eehHHHH---HHHHHHcCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV--CVQTETV---LRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~--~~qt~~~---~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
..+++|++|..|......-........|+.|+|||+++.- ....++. +...+...+|+.+|.||-|+.-
T Consensus 60 ----g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 60 ----GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred ----CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 4689999999999998889999999999999999987642 1122222 3333344579999999999974
No 311
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.27 E-value=1.9e-05 Score=79.98 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=68.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|.++|..|+||||+.+.|+...-.-... + ....|.........+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~--~------------~~~~t~~~~~~~~~~-------------------- 46 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS--S------------AKSVTQECQKYSGEV-------------------- 46 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T--T------------TSS--SS-EEEEEEE--------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc--c------------cCCcccccceeeeee--------------------
Confidence 489999999999999999997654322110 0 011222222233333
Q ss_pred CCeEEEEEcCCCCcc-------cHHHHHHHhh----hcCcEEEEEcCCCcceehHHHHHHHHH-HcCC----ceEEEEec
Q psy16810 89 KGFLINLIDSPGHVD-------FSSEVTAALR----VTDGALVVVDCVSGVCVQTETVLRQAI-AERI----KPVLFMNK 152 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d-------f~~~~~~al~----~~D~ailVvda~~g~~~qt~~~~~~~~-~~~i----p~iv~iNK 152 (755)
.+..+++|||||..| ...++..++. ..+++|+|+... ......+..++... .+|- ..||+++.
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~ 125 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTH 125 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEE
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhh
Confidence 488999999999854 2344555443 357899999887 56555666665554 3442 46888898
Q ss_pred cchhh
Q psy16810 153 MDRAL 157 (755)
Q Consensus 153 iD~~~ 157 (755)
.|...
T Consensus 126 ~d~~~ 130 (212)
T PF04548_consen 126 ADELE 130 (212)
T ss_dssp GGGGT
T ss_pred ccccc
Confidence 88754
No 312
>KOG0087|consensus
Probab=98.27 E-value=1.7e-06 Score=83.94 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=79.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.-.|+++|.+++|||-|+.++....=.+ |.. +.+.+.|.... ...+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~----------------~Sk-------sTIGvef~t~t-----------~~vd 59 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSL----------------ESK-------STIGVEFATRT-----------VNVD 59 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCc----------------ccc-------cceeEEEEeec-----------eeec
Confidence 5679999999999999999983211111 111 11222222100 0123
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---CCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
++-.+.+++||.|...|..-+.+..|.+-||++|-|.+....-+...-| ++++.+ +++++++-||+|+..
T Consensus 60 ~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 60 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred CcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 3567889999999999998888889999999999999876554433333 344433 578999999999964
No 313
>KOG0095|consensus
Probab=98.27 E-value=6.5e-06 Score=74.81 Aligned_cols=120 Identities=19% Similarity=0.250 Sum_probs=80.2
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
.-+..-.|+++|..|+|||-|+.++ .-|.... | .|-||-... ..+ .
T Consensus 3 dykflfkivlvgnagvgktclvrrf--tqglfpp---g-------------qgatigvdf---mik-------------t 48 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRF--TQGLFPP---G-------------QGATIGVDF---MIK-------------T 48 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhh--hccCCCC---C-------------CCceeeeeE---EEE-------------E
Confidence 3445678999999999999999998 2343321 1 122332111 110 0
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHHc---CCceEEEEeccchhh
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
...+++..++.++||.|+..|..-+.+..|.+.+.|+|.|.+....---.. -++...++ ++-.|+|-||+|+..
T Consensus 49 vev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 49 VEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred EEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 112345678999999999999999999999999999999987654332222 22333333 345588999999964
No 314
>KOG0076|consensus
Probab=98.23 E-value=2.6e-06 Score=79.90 Aligned_cols=121 Identities=15% Similarity=0.109 Sum_probs=82.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHH-hcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVS-KAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~-~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
+.--+|.|+|.-+|||||+++++=. +++... .++ +.+. --|+.....+.+.
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~--------~l~--~~ki--~~tvgLnig~i~v---------------- 66 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYG--------GLN--PSKI--TPTVGLNIGTIEV---------------- 66 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhc--------CCC--HHHe--ecccceeecceee----------------
Confidence 3446889999999999999999821 111110 010 0000 0122222222222
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-----eehHHHHHHHHHHcCCceEEEEeccchhhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-----CVQTETVLRQAIAERIKPVLFMNKMDRALL 158 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-----~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~ 158 (755)
....++|||.-|.....+-.......|.+++.||||.+.- ..+-+.+...-...|+|+++..||-|+.++
T Consensus 67 ----~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 67 ----CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred ----ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 1568999999999888888888889999999999999832 233455666667789999999999999763
No 315
>KOG0086|consensus
Probab=98.21 E-value=3.3e-06 Score=77.07 Aligned_cols=117 Identities=24% Similarity=0.260 Sum_probs=77.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
-.-.+.++|+.|+|||-|+.+++... +-|...+ .-|+..-+..+..
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~k------------fkDdssH--TiGveFgSrIinV-------------------- 53 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENK------------FKDDSSH--TIGVEFGSRIVNV-------------------- 53 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhh------------hcccccc--eeeeeecceeeee--------------------
Confidence 35678999999999999999996531 1111100 0112111111211
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHHc---CCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~~---~ip~iv~iNKiD~~~ 157 (755)
.++..++.++||.|+..|..-+.+..|.+-||++|.|++.--.-....-|. -++.+ ++-++++-||-|+..
T Consensus 54 GgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 54 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred cCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 235688999999999999999999999999999999998754444333342 23333 445566789999864
No 316
>KOG4252|consensus
Probab=98.19 E-value=1.5e-06 Score=81.38 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=81.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
....+.|+|..++||||++.+.+. |.... ...++...|+.+ |.|.+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCk--gifTk-dykktIgvdfle----rqi~v~-------------------------- 65 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCK--GIFTK-DYKKTIGVDFLE----RQIKVL-------------------------- 65 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhc--ccccc-ccccccchhhhh----HHHHhh--------------------------
Confidence 457889999999999999999842 44332 122233334432 122111
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH---HHHHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR---QAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~---~~~~~~ip~iv~iNKiD~~~ 157 (755)
..+..+.++||.|..+|..-+-+..|.+.+.+||++.++-..-....-|. +..-..+|.+++-||||+..
T Consensus 66 -~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 66 -IEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred -HHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH
Confidence 13567788999999999999999999999999999988755433322333 33456899999999999863
No 317
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.15 E-value=1.3e-05 Score=68.26 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=54.3
Q ss_pred CeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe
Q psy16810 290 PLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369 (755)
Q Consensus 290 pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai 369 (755)
||+++|..++..+ .|. +..|||.+|++++||+|++.+.+ .. .+|+.+... ..++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~~-----~~V~si~~~----~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----ES-----VEVKSIYVD----DEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----cE-----EEEEEEEEC----CeECCEECCCCEEEE
Confidence 6889999999877 887 89999999999999999998752 21 156666432 378999999999985
Q ss_pred --cccc
Q psy16810 370 --VGVD 373 (755)
Q Consensus 370 --~gl~ 373 (755)
.+++
T Consensus 66 ~l~~~~ 71 (83)
T cd03698 66 KLKGID 71 (83)
T ss_pred EECCCC
Confidence 4544
No 318
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.15 E-value=1.6e-05 Score=82.96 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=71.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccc--cceEEEEeeeCccccccccCCCccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIK--STAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+-.|+++|-+++|||||+.++....- +.+...++ |+. ..++.. .
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkP-----KIadYpFT-----------TL~PnLGvV~~--~---------------- 204 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKP-----KIADYPFT-----------TLVPNLGVVRV--D---------------- 204 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCC-----cccCCccc-----------cccCcccEEEe--c----------------
Confidence 45689999999999999999854322 22222222 222 233332 1
Q ss_pred cCCCCeEEEEEcCCCCc-----------ccHHHHHHHhhhcCcEEEEEcCCCcc----eehHHHHHHHHHHc-----CCc
Q psy16810 86 KNEKGFLINLIDSPGHV-----------DFSSEVTAALRVTDGALVVVDCVSGV----CVQTETVLRQAIAE-----RIK 145 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~-----------df~~~~~~al~~~D~ailVvda~~g~----~~qt~~~~~~~~~~-----~ip 145 (755)
.+..+.+-|.||.. +|.+.+++ |-..+.|||.+.-- ...-+.++..+.+| +.|
T Consensus 205 ---~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~ 277 (369)
T COG0536 205 ---GGESFVVADIPGLIEGASEGVGLGLRFLRHIER----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP 277 (369)
T ss_pred ---CCCcEEEecCcccccccccCCCccHHHHHHHHh----hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc
Confidence 25678999999994 57766665 45678899987432 33444555555555 569
Q ss_pred eEEEEeccchh
Q psy16810 146 PVLFMNKMDRA 156 (755)
Q Consensus 146 ~iv~iNKiD~~ 156 (755)
.+++.||||..
T Consensus 278 ~ivv~NKiD~~ 288 (369)
T COG0536 278 RIVVLNKIDLP 288 (369)
T ss_pred eEEEEeccCCC
Confidence 99999999965
No 319
>KOG0093|consensus
Probab=98.13 E-value=2.5e-05 Score=71.16 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-.+.|+|...+|||+++-+.+..+=.+. + =..-||-.+... .|+ ..
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~a--------f------vsTvGidFKvKT---vyr-----------------~~ 67 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSA--------F------VSTVGIDFKVKT---VYR-----------------SD 67 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccc--------e------eeeeeeeEEEeE---eee-----------------cc
Confidence 4678999999999999987643211100 0 000122222211 122 11
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH----HHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL----RQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+..++.++||.|.+.+..-+-...|.+++.||+.|.+..-.-...+-| +.....+.|+|++-||+|+..
T Consensus 68 kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 68 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred cEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 457899999999999988888899999999999998875433332222 222456889999999999864
No 320
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.13 E-value=9.2e-06 Score=68.03 Aligned_cols=71 Identities=28% Similarity=0.371 Sum_probs=55.2
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
+.++|++++.+++.|. ++++||++|+|++||.+++.+. ....+ .+|..++... .+++++.|||++++.
T Consensus 1 ~~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~--~~~~~-----~~i~~i~~~~----~~~~~~~aG~~~~~~ 68 (83)
T cd01342 1 LRALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPG--GGGVK-----GKVKSLKRFK----GEVDEAVAGDIVGIV 68 (83)
T ss_pred CeeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecC--CceeE-----EEEeEeEecC----ceeceecCCCEEEEE
Confidence 4678999998888887 8999999999999999998752 01111 2567776554 678999999999998
Q ss_pred ccc
Q psy16810 371 GVD 373 (755)
Q Consensus 371 gl~ 373 (755)
+.+
T Consensus 69 ~~~ 71 (83)
T cd01342 69 LKD 71 (83)
T ss_pred Ecc
Confidence 754
No 321
>PTZ00258 GTP-binding protein; Provisional
Probab=98.13 E-value=1.2e-05 Score=87.90 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=58.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
..-..|+|+|.+|+|||||.++|.... ......++ .|+......+.+...... ..... .+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pf---------------tTi~p~~g~v~~~d~r~~-~l~~~--~~~ 79 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPF---------------CTIDPNTARVNVPDERFD-WLCKH--FKP 79 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCC---------------CcccceEEEEecccchhh-HHHHH--cCC
Confidence 344579999999999999999994332 22222233 233333333333200000 00000 001
Q ss_pred cCCCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCC
Q psy16810 86 KNEKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCV 125 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~ 125 (755)
...-..++.|+||||... ........++.+|++++|||+.
T Consensus 80 ~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 80 KSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 111245799999999753 3446677889999999999985
No 322
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.10 E-value=1.2e-05 Score=86.88 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=61.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.-||||+|..|+|||||+++|..... - ..|. -..|.+ .++.....|.+.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~-~---d~~a----------A~tGv~-etT~~~~~Y~~p---------------- 83 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGH-E---DEGA----------APTGVV-ETTMEPTPYPHP---------------- 83 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--T-T---STTS------------SSSH-SCCTS-EEEE-S----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-C---CcCc----------CCCCCC-cCCCCCeeCCCC----------------
Confidence 35999999999999999999942111 0 1111 111221 111122233310
Q ss_pred CCCeEEEEEcCCCCc--ccHHHHHH---HhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHV--DFSSEVTA---ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~--df~~~~~~---al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+--.+.|+|.||.. +|..+..- .+...|..|+|.+. -...-...+++.+.++|.|+.+|-+|+|...
T Consensus 84 -~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 84 -KFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDL 155 (376)
T ss_dssp -S-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHH
T ss_pred -CCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccH
Confidence 12358999999983 44333222 46677876666553 2233445667888999999999999999843
No 323
>KOG0395|consensus
Probab=98.10 E-value=6.6e-06 Score=81.96 Aligned_cols=114 Identities=20% Similarity=0.262 Sum_probs=77.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCcccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
-..|+++|..|+|||+|+-+++... +.+.+. -||..+ .-.+. .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~------------f~~~y~------ptied~y~k~~~------------------v 46 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR------------FVEDYD------PTIEDSYRKELT------------------V 46 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc------------cccccC------CCccccceEEEE------------------E
Confidence 4689999999999999998885421 111110 122110 00000 1
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHH----HHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQA----IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~----~~~~ip~iv~iNKiD~~~ 157 (755)
++....+.++||+|..+|...-...++..|+-++|.+.++--.-+. ..++.++ ....+|+++|.||.|+..
T Consensus 47 ~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 47 DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 1246788899999999999999999999999999999887543332 2233333 234579999999999975
No 324
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.08 E-value=1.6e-05 Score=68.93 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=61.4
Q ss_pred CCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeE
Q psy16810 288 NAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNIC 367 (755)
Q Consensus 288 ~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIv 367 (755)
++||++.|.++|..++.|. ++.|||.+|+++.||+|++++.+ .. .+|.++... ..++++|.|||.+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~----~~-----~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG----VT-----GEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC----cE-----EEEEEEEEC----CcCcCEECCCCEE
Confidence 4699999999998888887 89999999999999999998753 11 256666433 3678999999998
Q ss_pred Eec--cccceeeecc-eeec
Q psy16810 368 GLV--GVDQFLVKTG-TITT 384 (755)
Q Consensus 368 ai~--gl~~~~~~~g-Tl~~ 384 (755)
++. +++...++.| -|++
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~ 87 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGD 87 (91)
T ss_pred EEEECCCCHHHcCCcCEEcc
Confidence 873 5433223444 4444
No 325
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.08 E-value=1.8e-05 Score=83.32 Aligned_cols=123 Identities=18% Similarity=0.255 Sum_probs=67.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-||-++|..|.|||||++.|+........ ...+.......+..++...... .. .++
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~--l~----------------e~~ 60 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED------SSIPPPSASISRTLEIEERTVE--LE----------------ENG 60 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEE--EE----------------ETC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc------ccccccccccccccceeeEEEE--ec----------------cCC
Confidence 58999999999999999999764332221 0001111122233333322222 21 112
Q ss_pred CCeEEEEEcCCCCcccH-------------HHH-HHHh-------------hhcCcEEEEEcCC-CcceehHHHHHHHHH
Q psy16810 89 KGFLINLIDSPGHVDFS-------------SEV-TAAL-------------RVTDGALVVVDCV-SGVCVQTETVLRQAI 140 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~-------------~~~-~~al-------------~~~D~ailVvda~-~g~~~qt~~~~~~~~ 140 (755)
-...+++|||||+.|.. .+- ...+ ...|+|+..|+++ .|+.+.....++.+.
T Consensus 61 ~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls 140 (281)
T PF00735_consen 61 VKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS 140 (281)
T ss_dssp EEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT
T ss_pred cceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc
Confidence 35689999999985421 110 1111 1236899999986 577777776665543
Q ss_pred HcCCceEEEEeccchh
Q psy16810 141 AERIKPVLFMNKMDRA 156 (755)
Q Consensus 141 ~~~ip~iv~iNKiD~~ 156 (755)
..+++|-||.|.|..
T Consensus 141 -~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 141 -KRVNVIPVIAKADTL 155 (281)
T ss_dssp -TTSEEEEEESTGGGS
T ss_pred -ccccEEeEEeccccc
Confidence 347899999999984
No 326
>KOG0088|consensus
Probab=98.08 E-value=3e-06 Score=77.80 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-.|+++|..=+|||+|+-+.+.. ++.+.+- -|++++..+-..+ .+.
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~En------------kFn~kHl------sTlQASF~~kk~n----------------~ed 59 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVEN------------KFNCKHL------STLQASFQNKKVN----------------VED 59 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHh------------hcchhhH------HHHHHHHhhcccc----------------ccc
Confidence 56889999999999999877542 1111111 1222221111110 011
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH----HHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL----RQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~ip~iv~iNKiD~~~ 157 (755)
....++++||.|+..|..----..|.+|||++|.|.++.-..|-..-| +++.-..+-.++|-||+|+..
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 356789999999999987766778999999999999987766665444 333333467899999999863
No 327
>KOG0071|consensus
Probab=98.07 E-value=2.1e-05 Score=71.04 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=83.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-.|.++|-.++||||++-.|........ .. .-|++++ +..|
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~~------ip---------TvGFnve----tVty-------------------- 58 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVTT------IP---------TVGFNVE----TVTY-------------------- 58 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCccc------cc---------ccceeEE----EEEe--------------------
Confidence 4577899999999999988843211111 00 1133332 3344
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc--ceehHHHHHHHH---HHcCCceEEEEeccchhhhcccCC
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG--VCVQTETVLRQA---IAERIKPVLFMNKMDRALLELQLD 163 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g--~~~qt~~~~~~~---~~~~ip~iv~iNKiD~~~~~~~~~ 163 (755)
++.++|++|..|......-..+......+.|+|+|+.+. ++..-.++-+.. +...+|++|+.||-|++.+ ..
T Consensus 59 kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~ 135 (180)
T KOG0071|consen 59 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MK 135 (180)
T ss_pred eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cC
Confidence 378999999999999999999999999999999998764 222222332332 2345789999999999875 56
Q ss_pred HHHHHHHH
Q psy16810 164 AEDLYQTF 171 (755)
Q Consensus 164 ~~~~~~~~ 171 (755)
+.++.+.+
T Consensus 136 pqei~d~l 143 (180)
T KOG0071|consen 136 PQEIQDKL 143 (180)
T ss_pred HHHHHHHh
Confidence 66665443
No 328
>KOG0077|consensus
Probab=98.07 E-value=2.8e-05 Score=72.55 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee-hHH----HHHHHHHHcCCceEEEEeccchhhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTE----TVLRQAIAERIKPVLFMNKMDRALL 158 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~-qt~----~~~~~~~~~~ip~iv~iNKiD~~~~ 158 (755)
.+-+++-+|..||..-..-.......+|++|.+||+.+--.- ..+ .++......++|+++..||+|++.+
T Consensus 62 g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 62 GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 367888999999987777777788899999999999864322 222 2333333468999999999999874
No 329
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.06 E-value=1.6e-05 Score=85.16 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH--HHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET--VLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~--~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.+.||||+|... .++. ....+|.+++|++...|-.-|... +++.+ -++|+||.|+..
T Consensus 147 ~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~~ 208 (332)
T PRK09435 147 AGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGDN 208 (332)
T ss_pred cCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhcccc
Confidence 478999999999873 2332 577899999998766555544422 33333 389999999864
No 330
>KOG2486|consensus
Probab=98.03 E-value=1.7e-05 Score=80.25 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=81.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCcccc--ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA--KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
...-++++|..|.|||+|++.++...-..... ..|.+ -. +.. |.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---------------q~---in~-f~--------------- 180 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---------------QA---INH-FH--------------- 180 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---------------ee---eee-ee---------------
Confidence 34678999999999999999997653322211 12221 11 111 11
Q ss_pred ccCCCCeEEEEEcCCCC----------cccHHHHHHHhh---hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEe
Q psy16810 85 AKNEKGFLINLIDSPGH----------VDFSSEVTAALR---VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMN 151 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh----------~df~~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iN 151 (755)
-+..+.++|.||+ .||..-+...+- ..=-+.++||++-++++-....+..+.+.++|..+++|
T Consensus 181 ----v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfT 256 (320)
T KOG2486|consen 181 ----VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFT 256 (320)
T ss_pred ----ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeee
Confidence 2568899999994 355555555443 33457889999999999999999999999999999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|||+..
T Consensus 257 K~DK~k 262 (320)
T KOG2486|consen 257 KCDKQK 262 (320)
T ss_pred hhhhhh
Confidence 999853
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.03 E-value=1.2e-05 Score=83.96 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=54.9
Q ss_pred EEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCc--cccccccCCCccccCC
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDD--KDMVFITNPDQTAKNE 88 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 88 (755)
|||+|.+++|||||.++|....-. ....++ .|+......+.+.... ..+... +....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-~~n~pf---------------tTi~p~~g~v~v~d~r~~~l~~~~-----~~~k~ 59 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-AANYPF---------------CTIEPNVGIVPVPDERLDKLAEIV-----KPKKI 59 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-cccccc---------------cchhceeeeEEeccchhhhHHHHh-----CCcee
Confidence 689999999999999999543321 111122 2333333333332000 000000 00001
Q ss_pred CCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCC
Q psy16810 89 KGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~ 126 (755)
-...+.|+||||..+ +.......++.+|+.+.|||+.+
T Consensus 60 ~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 60 VPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 124699999999753 33456677899999999999864
No 332
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.00 E-value=1.8e-05 Score=84.50 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.+.||||||... .....+..+|.++++.+...|-.-+.. . ....++|.++++||+|+..
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~~--~--~~l~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQGI--K--AGLMEIADIYVVNKADGEG 186 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHHH--H--HHHhhhccEEEEEcccccc
Confidence 478999999999753 223457788999888765443222211 1 1124788999999999965
No 333
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.98 E-value=2.2e-05 Score=84.71 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=56.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+|+|.+++|||||.++|.... ......++ .|+......+.+........ ... .+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypf---------------tTi~p~~G~~~v~d~r~~~l-~~~--~~p~~~ 63 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPF---------------CTIEPNVGVVPVPDPRLDKL-AEI--VKPKKI 63 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-Ceeccccc---------------ccccceEEEEEeccccchhh-HHh--cCCccc
Confidence 479999999999999999995533 11111222 23333333333321000000 000 000111
Q ss_pred CCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCC
Q psy16810 89 KGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~ 126 (755)
-...+.|+||||..+ ........++.+|++++|||+.+
T Consensus 64 ~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 64 VPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred cCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 134699999999753 33356677899999999999864
No 334
>PTZ00099 rab6; Provisional
Probab=97.95 E-value=1.2e-05 Score=79.05 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=52.9
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHH-HH--cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQA-IA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~-~~--~~ip~iv~iNKiD~~~ 157 (755)
+...++|+||||+..|.......++.+|++|+|+|++....-+....| ..+ .. .++|+++|.||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 367899999999999999888999999999999999885433332223 222 22 3568899999999853
No 335
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.92 E-value=1.7e-05 Score=80.00 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=69.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc--ccCcc-cccCCchhhhhhccccccceEEEEeeeCccccccccC--
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA--KAGET-RFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN-- 80 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~-~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~-- 80 (755)
..++||+++|+.|+|||||+++|+...+...+. ..+.. .-.|....+ ..|..+ +.+. .+-.|.....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~----~~l~---~gcic~~~~~~~ 91 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPA----IQIN---TGKECHLDAHMV 91 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcE----EEEc---CCCcccCChHHH
Confidence 358999999999999999999999875421110 11111 011221111 122211 1111 0000100000
Q ss_pred CC-ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 81 PD-QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 81 ~~-~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.. -......+..+.||+|-|..-... ......+..+.|+|+..+...+. +.....+.|.++++||+|+..
T Consensus 92 ~~~l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 92 AHALEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHHHHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccc
Confidence 00 000001245788999999321110 11123456678999987654322 223445678999999999863
No 336
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.87 E-value=9.6e-05 Score=72.23 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=43.5
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHh----h--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAAL----R--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al----~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.+.+|||||...+..+....+ . ..|.+++|+|+..+.... +..++.....++ .-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCCC-CEEEEECCcCCC
Confidence 367788999999964433333322 2 379999999997543222 344454455563 567789999853
No 337
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.86 E-value=5.6e-05 Score=71.86 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=41.5
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD 154 (755)
.++.+.||||||.. ......++.+|-+++|+....+-..... ...-+..--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~----k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAI----KAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHh----hhhHhhhcCEEEEeCCC
Confidence 37889999999964 4556799999999999987632222222 22333445689999998
No 338
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.82 E-value=0.00022 Score=70.13 Aligned_cols=66 Identities=24% Similarity=0.240 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
..+.+.+||||+... ..+..++..+|.+++|+.+.......+...++.+.+.++|..+++||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 478899999997643 467788999999999999987666677888888899999999999999964
No 339
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.77 E-value=7.5e-05 Score=80.02 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCc----ccH---HHHHHHhhhcCcEEEEEcCCC
Q psy16810 90 GFLINLIDSPGHV----DFS---SEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 90 ~~~i~lIDtPGh~----df~---~~~~~al~~~D~ailVvda~~ 126 (755)
...++++||||.. .+. ......++.||++++|||+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4679999999983 333 345667999999999999975
No 340
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.77 E-value=0.00017 Score=63.34 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=63.0
Q ss_pred CCCCeEEEEEeeeccC--------CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeee
Q psy16810 287 PNAPLMMYVSKMVPTS--------DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAI 358 (755)
Q Consensus 287 ~~~pl~~~V~K~~~~~--------~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v 358 (755)
.++|+.++|.++|... ..|. ++-+++.+|.|+.||.|.+.+--... ...++.+..+..-....-.....+
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~-~~~~~~~~pi~T~I~sl~~~~~~l 79 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVK-DEGKIKCRPIFTKIVSLKAENNDL 79 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeee-cCCCeeEEEEEEEEEEEEecCccc
Confidence 3678899999988765 6677 89999999999999999876421111 111111112222223333455789
Q ss_pred ccccCCCeEEe-ccccceeeecceee
Q psy16810 359 EDVPSGNICGL-VGVDQFLVKTGTIT 383 (755)
Q Consensus 359 ~~a~AGdIvai-~gl~~~~~~~gTl~ 383 (755)
++|.||+.++| ++|+..+.+.+.+.
T Consensus 80 ~~a~pGgliGvgT~Ldpsltk~D~l~ 105 (113)
T cd03688 80 QEAVPGGLIGVGTKLDPTLTKADRLV 105 (113)
T ss_pred cEEeCCCeEEEccccCccccccceee
Confidence 99999999998 57777666655443
No 341
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.76 E-value=0.00019 Score=81.68 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=66.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCcccc-ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA-KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..+|+++|.+|+|||||+++|+......... ..++ .........+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~T----------------Tr~~ei~~~i------------------ 163 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGT----------------TSVQEIEGLV------------------ 163 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCc----------------eEEEEEEEEE------------------
Confidence 4689999999999999999997654332211 1111 1111111122
Q ss_pred CCCCeEEEEEcCCCCcccH------HHHHH----Hhh--hcCcEEEEEcCCCcce-ehHHHHHHHH-HHcC----CceEE
Q psy16810 87 NEKGFLINLIDSPGHVDFS------SEVTA----ALR--VTDGALVVVDCVSGVC-VQTETVLRQA-IAER----IKPVL 148 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~------~~~~~----al~--~~D~ailVvda~~g~~-~qt~~~~~~~-~~~~----ip~iv 148 (755)
++..+++|||||..+.. .++.. .+. .+|++|+|+....--. .+....++.. ..+| --.||
T Consensus 164 --dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIV 241 (763)
T TIGR00993 164 --QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIV 241 (763)
T ss_pred --CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEE
Confidence 36789999999997642 22222 333 3687777765432211 1233344433 2234 26799
Q ss_pred EEeccchhh
Q psy16810 149 FMNKMDRAL 157 (755)
Q Consensus 149 ~iNKiD~~~ 157 (755)
+++.-|...
T Consensus 242 VFThgD~lp 250 (763)
T TIGR00993 242 TLTHAASAP 250 (763)
T ss_pred EEeCCccCC
Confidence 999999863
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.71 E-value=2.8e-05 Score=74.75 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
-.+|+++|.+|+|||||+++|+....
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 45799999999999999999976443
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.70 E-value=0.0003 Score=73.91 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=40.4
Q ss_pred CCeEEEEEcCCCCcccHHHHHH-------Hhh-----hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTA-------ALR-----VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~-------al~-----~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.++.+.||||||.......... ... .+|..++|+|+..|-.... ......+..+ +.-+++||+|-.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~~~-~~g~IlTKlDe~ 230 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEAVG-LTGIILTKLDGT 230 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhhCC-CCEEEEEccCCC
Confidence 4688999999998654333332 221 2799999999976532211 1111122222 457889999985
No 344
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.70 E-value=0.00036 Score=77.10 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=41.2
Q ss_pred CCeEEEEEcCCCCcccH----HHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHc--CC-ceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFS----SEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAE--RI-KPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~----~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~--~i-p~iv~iNKiD~~ 156 (755)
.++.+.||||||..... .++....+ ..|-+++|+|+..|-.. ..++..+ .+ +.-+++||+|..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a-----~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA-----EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH-----HHHHHHHHhccCCcEEEEECccCC
Confidence 36889999999986443 34433332 35789999999877433 2223332 23 557889999975
No 345
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.70 E-value=0.00012 Score=80.90 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCc
Q psy16810 90 GFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSG 127 (755)
Q Consensus 90 ~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g 127 (755)
...++|+||||..+ ......+.++.+|++++|||+..+
T Consensus 71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~ 115 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGS 115 (396)
T ss_pred eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCC
Confidence 35789999999643 333667779999999999999743
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.69 E-value=0.00014 Score=77.89 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=69.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccc--cCCch---------hhhhhccccccceEEEEeeeCccc-
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRF--TDTRK---------DEQERCITIKSTAISMYFELDDKD- 74 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~--~d~~~---------~E~~rgiTi~~~~~~~~~~~~~~~- 74 (755)
+...|+++|+.|+||||++..|...... ..++..+ .|... ....+|+.+.. .... .++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~----~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~----~~~~-~dpa~ 183 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA----QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIA----QKEG-ADPAS 183 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh----cCCeEEEEecCccchhhHHHHHHHHHHcCceEEE----eCCC-CCHHH
Confidence 3578999999999999999999664321 1122211 22211 11223332210 0000 0000
Q ss_pred cccccCCCccccCCCCeEEEEEcCCCCccc----HHHHHHHhhh--------cCcEEEEEcCCCcceehHHHHHHHHHHc
Q psy16810 75 MVFITNPDQTAKNEKGFLINLIDSPGHVDF----SSEVTAALRV--------TDGALVVVDCVSGVCVQTETVLRQAIAE 142 (755)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~i~lIDtPGh~df----~~~~~~al~~--------~D~ailVvda~~g~~~qt~~~~~~~~~~ 142 (755)
..+.. -......++.+.||||||...+ +.++....++ .|..++|+||..|-.... ++..+
T Consensus 184 ~v~~~---l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-----~a~~f 255 (318)
T PRK10416 184 VAFDA---IQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-----QAKAF 255 (318)
T ss_pred HHHHH---HHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-----HHHHH
Confidence 00000 0001124788999999998543 3344444332 567899999997643222 23332
Q ss_pred --CC-ceEEEEeccchh
Q psy16810 143 --RI-KPVLFMNKMDRA 156 (755)
Q Consensus 143 --~i-p~iv~iNKiD~~ 156 (755)
.+ +.-+++||+|..
T Consensus 256 ~~~~~~~giIlTKlD~t 272 (318)
T PRK10416 256 HEAVGLTGIILTKLDGT 272 (318)
T ss_pred HhhCCCCEEEEECCCCC
Confidence 23 447889999964
No 347
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.69 E-value=0.00021 Score=60.56 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=50.2
Q ss_pred CeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe
Q psy16810 290 PLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369 (755)
Q Consensus 290 pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai 369 (755)
||++.|..+|... |. +..|||.+|++++||+|++.+.+ .. .+|.++... ..++++|.|||.+++
T Consensus 1 plr~~I~~v~~~~--g~-vv~G~v~~G~i~~G~~v~i~P~~----~~-----~~V~si~~~----~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM--GT-VVLGKVESGTIKKGDKLLVMPNK----TQ-----VEVLSIYNE----DVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC--CE-EEEEEEeeeEEecCCEEEEeCCC----cE-----EEEEEEEEC----CEECCEECCCCEEEE
Confidence 6788888888653 76 89999999999999999998752 22 146666432 368999999999987
Q ss_pred c
Q psy16810 370 V 370 (755)
Q Consensus 370 ~ 370 (755)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 3
No 348
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00063 Score=76.45 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=39.4
Q ss_pred CCeEEEEEcCCCCcccHHHHHH---Hhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTA---ALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~---al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.++.+.||||||.......... .++ ..+..++|+++..+..... .+++..... .+.-+++||+|..
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 3678999999997543322221 111 1345788898876543333 233333332 3567899999985
No 349
>KOG1954|consensus
Probab=97.68 E-value=0.0003 Score=73.68 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=64.0
Q ss_pred eEEEEEcCCCC-----------cccHHHHHHHhhhcCcEEEEEcCCC-cceehHHHHHHHHHHcCCceEEEEeccchhhh
Q psy16810 91 FLINLIDSPGH-----------VDFSSEVTAALRVTDGALVVVDCVS-GVCVQTETVLRQAIAERIKPVLFMNKMDRALL 158 (755)
Q Consensus 91 ~~i~lIDtPGh-----------~df~~~~~~al~~~D~ailVvda~~-g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~ 158 (755)
..|++|||||. -||..-..--+.-+|.++++.|+.. .+...+++++.+++-..-++-||+||.|..
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqV-- 224 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQV-- 224 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEecccccc--
Confidence 47999999998 3787777778889999999999874 678899999998887777889999999984
Q ss_pred cccCCHHHHHHHHHHHh
Q psy16810 159 ELQLDAEDLYQTFQRIV 175 (755)
Q Consensus 159 ~~~~~~~~~~~~~~~ii 175 (755)
+.+++.+.+..++
T Consensus 225 ----dtqqLmRVyGALm 237 (532)
T KOG1954|consen 225 ----DTQQLMRVYGALM 237 (532)
T ss_pred ----CHHHHHHHHHHHH
Confidence 4566655555444
No 350
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.67 E-value=3.4e-05 Score=73.61 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.++++|+.|+|||||+++|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 78999999999999999999765
No 351
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.66 E-value=0.00014 Score=72.50 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCc---hhhhhhccccccceEEEEeeeCcc-ccccccCCCcc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTR---KDEQERCITIKSTAISMYFELDDK-DMVFITNPDQT 84 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~---~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~~ 84 (755)
+.|+++|+.|+||||.+-.|.+...... .+.+- -.+|.+ ..|+-+-..-... +.+.-..... ...... ..-.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~-~~v~l-is~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~-~~l~ 77 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKG-KKVAL-ISADTYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAR-EALE 77 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT---EEE-EEESTSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHH-HHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhcc-cccee-ecCCCCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHH-HHHH
Confidence 5789999999999999999976543221 11110 012332 1222221111111 1111000000 000000 0000
Q ss_pred ccCCCCeEEEEEcCCCCcccHHH----HHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSE----VTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~----~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
....+++.+.||||||......+ +..-+. ..+-.++|+|++.+-.... .+.......++..+ +++|+|...
T Consensus 78 ~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~~l-IlTKlDet~ 154 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGIDGL-ILTKLDETA 154 (196)
T ss_dssp HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTCEE-EEESTTSSS
T ss_pred HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCceE-EEEeecCCC
Confidence 00113577999999998654433 332222 3577999999998754333 45555555566544 499999853
No 352
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00041 Score=75.10 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=39.6
Q ss_pred CeEEEEEcCCCCccc----HHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcC-Cce-EEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDF----SSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAER-IKP-VLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df----~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip~-iv~iNKiD~~ 156 (755)
++.+.||||||.... +.++...+. ..|..+||+|++.+. .....++..++ +++ =++++|+|-.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~----~d~~~i~~~F~~~~idglI~TKLDET 390 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDET 390 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh----HHHHHHHHHhcCCCCCEEEEEcccCC
Confidence 468899999999543 444444443 346789999986543 22233343333 333 5779999985
No 353
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.63 E-value=4.7e-05 Score=67.76 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=61.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+++|.+|+|||||+.+|-...-. ..+| . ...|+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-----ykKT------------------Q--Ave~~------------------- 37 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-----YKKT------------------Q--AVEFN------------------- 37 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-----hccc------------------c--eeecc-------------------
Confidence 35889999999999999999332111 0011 1 22342
Q ss_pred CCeEEEEEcCCCC----cccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGH----VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh----~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+. -.|||||. ..+.......+..+|..++|-.++++.+.-.- ..+.-...|+|-+|+|.|+.
T Consensus 38 -d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 38 -DK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred -Cc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc---ccccccccceEEEEeccccc
Confidence 11 24899994 22333344555678899999998886433221 22334556889999999996
No 354
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.59 E-value=0.00052 Score=72.72 Aligned_cols=123 Identities=19% Similarity=0.277 Sum_probs=74.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-||-++|..|.||||+++.|+...- .+. ..+-+..+.-...++.|......+. .++
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l-~~~-----~~~~~~~~~~~~~~~~i~~~~~~l~------------------e~~ 79 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSL-VDE-----TEIDDIRAEGTSPTLEIKITKAELE------------------EDG 79 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhc-cCC-----CCccCcccccCCcceEEEeeeeeee------------------cCC
Confidence 5899999999999999999987621 111 0011111111233444443333221 112
Q ss_pred CCeEEEEEcCCCCcccHHH-------------HH--------HHhhh-------cCcEEEEEcCC-CcceehHHHHHHHH
Q psy16810 89 KGFLINLIDSPGHVDFSSE-------------VT--------AALRV-------TDGALVVVDCV-SGVCVQTETVLRQA 139 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~-------------~~--------~al~~-------~D~ailVvda~-~g~~~qt~~~~~~~ 139 (755)
-...+|+|||||+.||+.. .. ..-|. .++|+..+..+ .|+.+...+.++.+
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~l 159 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRL 159 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 3567899999999776431 11 11122 24678888754 67888887776544
Q ss_pred HHcCCceEEEEeccchh
Q psy16810 140 IAERIKPVLFMNKMDRA 156 (755)
Q Consensus 140 ~~~~ip~iv~iNKiD~~ 156 (755)
. ..+.+|-||-|.|..
T Consensus 160 s-~~vNlIPVI~KaD~l 175 (373)
T COG5019 160 S-KRVNLIPVIAKADTL 175 (373)
T ss_pred h-cccCeeeeeeccccC
Confidence 3 356788899999984
No 355
>KOG3883|consensus
Probab=97.58 E-value=0.00038 Score=64.04 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=78.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCcccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
.-.|.++|.-++|||.+++.|++-...+..... -||.-. .+++.- .
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~----------------pTiEDiY~~svet-----------------~ 55 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELH----------------PTIEDIYVASVET-----------------D 55 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccc----------------cchhhheeEeeec-----------------C
Confidence 456889999999999999999986654432100 122111 111111 1
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHH-HhhhcCcEEEEEcCCCcceehHHHHHHHH-----HHcCCceEEEEeccchh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTA-ALRVTDGALVVVDCVSGVCVQTETVLRQA-----IAERIKPVLFMNKMDRA 156 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~-al~~~D~ailVvda~~g~~~qt~~~~~~~-----~~~~ip~iv~iNKiD~~ 156 (755)
++....+.|-||.|..+.-.+.-+ .+..+|+.+||.|..+--.-|-.+.++.- .+..+|+++.-||.|+.
T Consensus 56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 223457889999999998555544 66889999999998887666665555432 22347999999999995
No 356
>KOG1490|consensus
Probab=97.51 E-value=0.00053 Score=74.78 Aligned_cols=137 Identities=22% Similarity=0.263 Sum_probs=75.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+.|+.+++|-+|+||||+++.+.... . . +..+ -+|.++- ..++.|
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtrad--v---e-----vqpY-------aFTTksL~vGH~dy---------------- 212 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRAD--D---E-----VQPY-------AFTTKLLLVGHLDY---------------- 212 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccc--c---c-----cCCc-------ccccchhhhhhhhh----------------
Confidence 357999999999999999887762110 0 0 0000 1122211 122222
Q ss_pred ccCCCCeEEEEEcCCCCcccH--------HHHHHHhhhcC-cEEEEEcCCCcce----ehHHHHHHHHH--HcCCceEEE
Q psy16810 85 AKNEKGFLINLIDSPGHVDFS--------SEVTAALRVTD-GALVVVDCVSGVC----VQTETVLRQAI--AERIKPVLF 149 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~--------~~~~~al~~~D-~ailVvda~~g~~----~qt~~~~~~~~--~~~ip~iv~ 149 (755)
+--.|.+|||||..|-- ...+.||.-.- +++++.|-++-+. .|-. ++.-.+ =.+.|.|+|
T Consensus 213 ----kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpLFaNK~~Ilv 287 (620)
T KOG1490|consen 213 ----KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLFANKVTILV 287 (620)
T ss_pred ----heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHH-HHHHhHHHhcCCceEEE
Confidence 24578999999996532 22334554333 4677888776432 2322 222222 236799999
Q ss_pred EeccchhhhcccCCHHHHHHHHHHHhhhceeeE
Q psy16810 150 MNKMDRALLELQLDAEDLYQTFQRIVENVNVII 182 (755)
Q Consensus 150 iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~ 182 (755)
+||+|....+ .++ ++-++.+..+.+.-|...
T Consensus 288 lNK~D~m~~e-dL~-~~~~~ll~~~~~~~~v~v 318 (620)
T KOG1490|consen 288 LNKIDAMRPE-DLD-QKNQELLQTIIDDGNVKV 318 (620)
T ss_pred eecccccCcc-ccC-HHHHHHHHHHHhccCceE
Confidence 9999986522 111 122344555555555433
No 357
>KOG3886|consensus
Probab=97.51 E-value=0.00022 Score=70.23 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=79.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-|.|.++|..|||||++-..+.+.--+.+..+. |-||+...-++.|-
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rl---------------g~tidveHsh~Rfl------------------ 50 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRL---------------GATIDVEHSHVRFL------------------ 50 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhcc---------------CCcceeeehhhhhh------------------
Confidence 478899999999999988776543222222222 34555444444443
Q ss_pred CCCeEEEEEcCCCCcccHHHHHH-----HhhhcCcEEEEEcCCCccee----hHHHHHHHHHHcC--CceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTA-----ALRVTDGALVVVDCVSGVCV----QTETVLRQAIAER--IKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~-----al~~~D~ailVvda~~g~~~----qt~~~~~~~~~~~--ip~iv~iNKiD~~ 156 (755)
++-.+|++|+.|...|+.+-.+ -++..+..+.|.|+...-.. .+...+++..+.. .++++++.|||+.
T Consensus 51 -Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 51 -GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred -hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 3568999999999988876665 56788999999998764322 3344555555443 4678899999997
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 130 ~ 130 (295)
T KOG3886|consen 130 Q 130 (295)
T ss_pred c
Confidence 5
No 358
>KOG2655|consensus
Probab=97.49 E-value=0.00058 Score=72.93 Aligned_cols=145 Identities=18% Similarity=0.297 Sum_probs=83.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-|+-++|..|.|||||++.|+...-. +...+ +..+.+..+..+|.+..+.+. .++
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~------~~~~~-~~~~~~~~~t~~i~~~~~~ie------------------e~g 76 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLS------GNREV-PGASERIKETVEIESTKVEIE------------------ENG 76 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhcc------CCccc-CCcccCccccceeeeeeeeec------------------CCC
Confidence 58899999999999999999775211 11111 222222233333433322221 112
Q ss_pred CCeEEEEEcCCCCcccHHH--------------HHHHh-------h------hcCcEEEEEcCC-CcceehHHHHHHHHH
Q psy16810 89 KGFLINLIDSPGHVDFSSE--------------VTAAL-------R------VTDGALVVVDCV-SGVCVQTETVLRQAI 140 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~--------------~~~al-------~------~~D~ailVvda~-~g~~~qt~~~~~~~~ 140 (755)
-.-.+|+|||||+.|+... -...+ | -.++|+..|..+ .|+.+...+.++. .
T Consensus 77 ~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~-l 155 (366)
T KOG2655|consen 77 VKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKK-L 155 (366)
T ss_pred eEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHH-H
Confidence 2457889999999775421 11111 1 235688888765 5788887776553 3
Q ss_pred HcCCceEEEEeccchhhhcccCCHHHHH---HHHHHHhhhceeeEEEe
Q psy16810 141 AERIKPVLFMNKMDRALLELQLDAEDLY---QTFQRIVENVNVIIATY 185 (755)
Q Consensus 141 ~~~ip~iv~iNKiD~~~~~~~~~~~~~~---~~~~~ii~~v~~~~~~~ 185 (755)
..++.+|-||-|.|.. +.+++. +.+.+.++..|...+.|
T Consensus 156 ~~~vNiIPVI~KaD~l------T~~El~~~K~~I~~~i~~~nI~vf~f 197 (366)
T KOG2655|consen 156 SKKVNLIPVIAKADTL------TKDELNQFKKRIRQDIEEHNIKVFDF 197 (366)
T ss_pred hccccccceeeccccC------CHHHHHHHHHHHHHHHHHcCcceecC
Confidence 3467888899999984 444543 34444444445444333
No 359
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.47 E-value=0.0002 Score=69.84 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..++++|.+|+|||||+++|+....
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc
Confidence 5799999999999999999975433
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.46 E-value=0.00021 Score=68.49 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
...+++++|++++|||||+++|+...
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45789999999999999999997644
No 361
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.43 E-value=0.00049 Score=58.47 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=50.5
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
|++.|.++|..++.|. +..|||.+|++++||++.+.+.+ .. .+|+++... ..++++|.|||.+++.
T Consensus 1 lr~~i~~~~~~~~~g~-vv~G~v~sG~i~~g~~v~~~p~~----~~-----~~V~sI~~~----~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 1 FRLPIDRVFTVKGQGT-VVTGTVLSGSVKVGDKVEILPLG----EE-----TRVRSIQVH----GKDVEEAKAGDRVALN 66 (83)
T ss_pred CEEEEEEEEEcCCcEE-EEEEEEeecEEeCCCEEEECCCC----ce-----EEEEEEEEC----CcCcCEEcCCCEEEEE
Confidence 4567778877777887 89999999999999999987642 11 146666432 4678999999999873
No 362
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.42 E-value=0.0003 Score=71.86 Aligned_cols=92 Identities=20% Similarity=0.108 Sum_probs=56.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
..++..|+|+|..++|||||+++|+....... +.+.. ....+||-+-....
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~--------~~~~~-~~~T~gi~~~~~~~-------------------- 54 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD--------VMDTS-QQTTKGIWMWSVPF-------------------- 54 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeE--------ecCCC-CCCccceEEEeccc--------------------
Confidence 45788999999999999999999976521111 01000 11123443221100
Q ss_pred ccCCCCeEEEEEcCCCCccc------HHHHHHHhhh--cCcEEEEEcCCC
Q psy16810 85 AKNEKGFLINLIDSPGHVDF------SSEVTAALRV--TDGALVVVDCVS 126 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df------~~~~~~al~~--~D~ailVvda~~ 126 (755)
..+.+..+.++||||..+- ......++.. +|..|+.+++..
T Consensus 55 -~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 55 -KLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred -cCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 0123578999999999653 2234556665 898888888753
No 363
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.41 E-value=0.00065 Score=58.26 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=50.0
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai 369 (755)
|.+.|..+|..+..|. +..|||.+|++++||++++.+.+. ++. ...+|..+.. ...++++|.|||.+++
T Consensus 1 ~~~~I~~vf~v~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~~--g~~---~~~~V~sI~~----~~~~~~~a~aGd~v~l 69 (87)
T cd03694 1 AEFQIDEIYSVPGVGT-VVGGTVSKGVIRLGDTLLLGPDQD--GSF---RPVTVKSIHR----NRSPVRVVRAGQSASL 69 (87)
T ss_pred CEEEEEeEEEcCCcce-EEEEEEecCEEeCCCEEEECCCCC--CCE---eEEEEEEEEE----CCeECCEECCCCEEEE
Confidence 3466777777778887 899999999999999999876420 110 1124555532 2477999999999887
No 364
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.40 E-value=0.0007 Score=75.47 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCCcccHHHH------HHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC--Cce-EEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEV------TAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--IKP-VLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~------~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~--ip~-iv~iNKiD~~ 156 (755)
++.+.+|||||...+..+. ..++..+|.+++|+|+..| | ..+.++..++ +++ -+++||+|-.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---q--~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---Q--QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---H--HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 3478999999986654333 2345568999999999887 2 3334555543 454 5789999964
No 365
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.38 E-value=0.00045 Score=59.26 Aligned_cols=68 Identities=16% Similarity=0.418 Sum_probs=50.0
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
|++.|..+|..++.|. +..|||.+|+++.||.|.+++.+. +.+ .+|..+.. ...++++|.|||.+++.
T Consensus 1 ~r~~V~~v~~~~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~~-----~~V~si~~----~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 1 FLMPIEDVFSIPGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TLK-----TTVTGIEM----FRKTLDEAEAGDNVGVL 68 (87)
T ss_pred CEeeEEEEEeCCCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cce-----EEEEEEEE----CCcCCCEECCCCEEEEE
Confidence 4567777777777887 899999999999999999876421 111 14666542 24678999999999874
No 366
>KOG0096|consensus
Probab=97.38 E-value=0.00043 Score=66.25 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=83.1
Q ss_pred CCCCCCC--eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccc
Q psy16810 1 MMDKKKN--IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFI 78 (755)
Q Consensus 1 ~~~~~~~--irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 78 (755)
|+..... ++.++++|..+.||||...+.+. |... +.---|+......+.|.
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~lt--geFe----------------~~y~at~Gv~~~pl~f~--------- 53 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLT--GEFE----------------KTYPATLGVEVHPLLFD--------- 53 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhc--ccce----------------ecccCcceeEEeeeeee---------
Confidence 4444444 89999999999999999998842 2221 11122444444444443
Q ss_pred cCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH--HH-HHcCCceEEEEeccch
Q psy16810 79 TNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR--QA-IAERIKPVLFMNKMDR 155 (755)
Q Consensus 79 ~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~--~~-~~~~ip~iv~iNKiD~ 155 (755)
.+.+..+++.+||.|...|.+---...-..-+|++.+|...-+.-+...-|. .+ ...++|++++-||.|.
T Consensus 54 -------tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi 126 (216)
T KOG0096|consen 54 -------TNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDI 126 (216)
T ss_pred -------cccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceec
Confidence 1113588999999999988766555556677899999988777655544332 22 3456899999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 127 ~~ 128 (216)
T KOG0096|consen 127 KA 128 (216)
T ss_pred cc
Confidence 54
No 367
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.35 E-value=0.0015 Score=61.40 Aligned_cols=79 Identities=9% Similarity=0.216 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc--CCceEEEEeccchhhhcccCCHHHHH
Q psy16810 91 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--RIKPVLFMNKMDRALLELQLDAEDLY 168 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~iv~iNKiD~~~~~~~~~~~~~~ 168 (755)
+.+.+||||+..+ .....++..+|.+++|+++..--...+...++.+.+. ..+..+++|+.+... ...+..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~-----~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPK-----EGKKVF 117 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHH-----HHHHHH
Confidence 6789999998754 5567889999999999998766555666666655433 346679999998642 233455
Q ss_pred HHHHHHhh
Q psy16810 169 QTFQRIVE 176 (755)
Q Consensus 169 ~~~~~ii~ 176 (755)
+.+++++.
T Consensus 118 ~~~~~~~~ 125 (139)
T cd02038 118 KRLSNVSN 125 (139)
T ss_pred HHHHHHHH
Confidence 55555443
No 368
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.001 Score=72.99 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCCccc----HHHHHHHhhhc--C-cEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDF----SSEVTAALRVT--D-GALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df----~~~~~~al~~~--D-~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.++.+.||||||..-. ..++..-+..+ + -.+||+||+.|..... .+++.....+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 4678999999998532 34454555543 3 5899999998843333 3333333223 336679999975
No 369
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.34 E-value=0.00037 Score=70.94 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHHHH
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDLY 168 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~~~ 168 (755)
.+|.+.||.|-|--. .|+ .-...+|..++|+-...|-.-|.... --+.+.=|+||||.|+.++ +...
T Consensus 120 aG~D~IiiETVGvGQ--sE~-~I~~~aD~~v~v~~Pg~GD~iQ~~Ka----GimEiaDi~vVNKaD~~gA------~~~~ 186 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQ--SEV-DIADMADTVVLVLVPGLGDEIQAIKA----GIMEIADIFVVNKADRPGA------DRTV 186 (266)
T ss_dssp TT-SEEEEEEESSST--HHH-HHHTTSSEEEEEEESSTCCCCCTB-T----THHHH-SEEEEE--SHHHH------HHHH
T ss_pred cCCCEEEEeCCCCCc--cHH-HHHHhcCeEEEEecCCCccHHHHHhh----hhhhhccEEEEeCCChHHH------HHHH
Confidence 478899999999754 222 23578999999999988888776431 1112356999999999775 3445
Q ss_pred HHHHHHhhh
Q psy16810 169 QTFQRIVEN 177 (755)
Q Consensus 169 ~~~~~ii~~ 177 (755)
..++..++.
T Consensus 187 ~~l~~~l~l 195 (266)
T PF03308_consen 187 RDLRSMLHL 195 (266)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 555555554
No 370
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.33 E-value=0.0006 Score=65.60 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=38.7
Q ss_pred CeEEEEEcCCCCcccHHH--------HHHHhhhcCcEEEEEcCCCcceeh--HHHHHHHHHHcCCceEEEEeccch
Q psy16810 90 GFLINLIDSPGHVDFSSE--------VTAALRVTDGALVVVDCVSGVCVQ--TETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~--------~~~al~~~D~ailVvda~~g~~~q--t~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
...+.||||||..+-..- ...+...+|.++.|||+....... ......|+. --=++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---FADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---HCCEEEEecccC
Confidence 567789999999753221 222344579999999987644321 112222322 234789999995
No 371
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.00082 Score=75.07 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=38.9
Q ss_pred CeEEEEEcCCCCcccH----HHHHHHhh---hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFS----SEVTAALR---VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~----~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
++.+.||||||+..+. .++...+. ..+-+.+|++++.+.. ....+++.....++ -=+++||+|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCC-CEEEEeccccc
Confidence 5789999999996543 23333333 2235688899876432 22233343333332 25889999984
No 372
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0018 Score=70.02 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.++|+++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999654
No 373
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.31 E-value=0.0012 Score=66.15 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=37.5
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce--EEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP--VLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~--iv~iNKiD~~~ 157 (755)
+....+|+|-|-. ...... -..+|.+|+|+|+.++...+.+ ...++.. ++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhccc
Confidence 4566889999931 111111 1236899999999987764321 1124444 89999999963
No 374
>KOG0410|consensus
Probab=97.30 E-value=0.00069 Score=70.17 Aligned_cols=115 Identities=25% Similarity=0.255 Sum_probs=73.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
....|+++|-.|+|||||+.+|.. +....+.+- -..+|- |..++ ..+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~-Aal~p~drL--FATLDp---------T~h~a----~Lp----------------- 223 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTK-AALYPNDRL--FATLDP---------TLHSA----HLP----------------- 223 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHh-hhcCccchh--heeccc---------hhhhc----cCC-----------------
Confidence 357899999999999999999962 222221100 011221 11111 111
Q ss_pred CCCCeEEEEEcCCCCc-cc-------HHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHHcCCc-------eEEEE
Q psy16810 87 NEKGFLINLIDSPGHV-DF-------SSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAERIK-------PVLFM 150 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~-df-------~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~ip-------~iv~i 150 (755)
.+..+.|.||-|+. |+ +..+..-..-+|..+-|+|.+..- +.|-+.++..+...++| +|=|=
T Consensus 224 --sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVd 301 (410)
T KOG0410|consen 224 --SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVD 301 (410)
T ss_pred --CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhc
Confidence 35678899999983 22 223334456789999999998764 67888899999999986 23355
Q ss_pred eccchh
Q psy16810 151 NKMDRA 156 (755)
Q Consensus 151 NKiD~~ 156 (755)
||+|..
T Consensus 302 nkiD~e 307 (410)
T KOG0410|consen 302 NKIDYE 307 (410)
T ss_pred cccccc
Confidence 666654
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=97.28 E-value=0.00029 Score=75.87 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=40.8
Q ss_pred CeEEEEEcCCCCcc----cHHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcC--Cc-eEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVD----FSSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAER--IK-PVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~d----f~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~--ip-~iv~iNKiD~~ 156 (755)
++.+.||||||... ++.++..-.+ ..|..++|+|+..|- ..++++..+. ++ --+++||+|..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 56799999999864 3444433323 468899999997752 3334444432 33 47789999985
No 376
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.26 E-value=0.0011 Score=55.92 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=48.0
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe
Q psy16810 291 LMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL 369 (755)
Q Consensus 291 l~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai 369 (755)
|++.|..+|.....|. .+.|||.+|++++||+|++.+.+ .. .+|..+.. + ..+++.|.|||.+++
T Consensus 1 lr~~V~dv~k~~~~~~-~v~Gkv~~G~v~~Gd~v~~~P~~----~~-----~~V~si~~-~---~~~~~~a~aGd~v~l 65 (81)
T cd03695 1 FRFPVQYVIRPNADFR-GYAGTIASGSIRVGDEVVVLPSG----KT-----SRVKSIET-F---DGELDEAGAGESVTL 65 (81)
T ss_pred CEeeEEEEEeeCCCcE-EEEEEEccceEECCCEEEEcCCC----Ce-----EEEEEEEE-C---CcEeCEEcCCCEEEE
Confidence 4566777776555565 68999999999999999998752 11 14666642 2 367899999999987
No 377
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.26 E-value=0.0016 Score=63.72 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=51.4
Q ss_pred EEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchh
Q psy16810 92 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRA 156 (755)
Q Consensus 92 ~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~ 156 (755)
.+.+|||||..+ .....++..+|.+|+|+++.......+...++.+...+.+ ..+++|+.|..
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 688999998755 4577889999999999999887777777777777777765 46899999864
No 378
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.24 E-value=0.0003 Score=69.86 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
.+++++|.+|+|||||+++|+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998753
No 379
>KOG0072|consensus
Probab=97.22 E-value=0.00049 Score=62.74 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH--HHHHHHHH---HcCCceEEEEeccchhhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT--ETVLRQAI---AERIKPVLFMNKMDRALL 158 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt--~~~~~~~~---~~~ip~iv~iNKiD~~~~ 158 (755)
++-+++++|.-|......-........|.+|.|||.++-..-.+ .+....+. ..+-..++|.||+|...+
T Consensus 60 KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 46789999999998888888889999999999999987543222 22222222 234567889999998763
No 380
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.00099 Score=73.67 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhh------cCcEEEEEcCCCcceehHHHHHHHHHHcC-Cce-EEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRV------TDGALVVVDCVSGVCVQTETVLRQAIAER-IKP-VLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~------~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip~-iv~iNKiD~~ 156 (755)
.++.+.||||+|......+...-+.. .+-.+||+|++.+...-. .+ +..+. ++. =++++|+|-.
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~-~~---~~~f~~~~~~~~I~TKlDEt 339 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD-EV---ISAYQGHGIHGCIITKVDEA 339 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH-HH---HHHhcCCCCCEEEEEeeeCC
Confidence 36778999999986544333333322 234689999986433221 22 22322 333 5679999985
No 381
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.17 E-value=0.00033 Score=66.02 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.++++|.+|+|||||+++|+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999653
No 382
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.00063 Score=74.62 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCcccHH----HHHHHhhh-----cCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSS----EVTAALRV-----TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~----~~~~al~~-----~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.++.+.||||||+..... ++..-++. ..-.+||+||+.|.... ..+.+.-...+ +-=++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCC-CCEEEEEcccCC
Confidence 367889999999854322 33333332 22578999998874332 22222222223 235678999975
No 383
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.16 E-value=0.0024 Score=71.87 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-+.|+++|+.|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 368999999999999999999754
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.00036 Score=75.78 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
.++|+|.+|+|||||+++|+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 57999999999999999997543
No 385
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.09 E-value=0.00079 Score=63.41 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc--CCceEEEEeccchh
Q psy16810 105 SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--RIKPVLFMNKMDRA 156 (755)
Q Consensus 105 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~iv~iNKiD~~ 156 (755)
.+++..++..+|.+++|+|+..+...+...+.+.+... ++|+++++||+|+.
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 35788999999999999999998888877777777766 89999999999984
No 386
>KOG1547|consensus
Probab=97.07 E-value=0.00068 Score=67.17 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~ 30 (755)
--||-++|..|.|||||++.|..
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~ 68 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFK 68 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHH
Confidence 46999999999999999999854
No 387
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.07 E-value=0.0033 Score=69.96 Aligned_cols=63 Identities=27% Similarity=0.465 Sum_probs=38.6
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHh------hhcCcEEEEEcCCCcceehHHHHHHHHHHc--CCce-EEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAAL------RVTDGALVVVDCVSGVCVQTETVLRQAIAE--RIKP-VLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al------~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~-iv~iNKiD~~ 156 (755)
.++.+.||||||...........+ ...|.+++|+|+..| | ....++..+ .+++ =+++||+|..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q--~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---Q--DAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 467899999999643322222222 246889999999754 2 233333333 2443 5679999953
No 388
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.07 E-value=0.0023 Score=57.10 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=47.2
Q ss_pred EEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc----eEEEEec
Q psy16810 92 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK----PVLFMNK 152 (755)
Q Consensus 92 ~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip----~iv~iNK 152 (755)
.+.+||||+..+ .....++..+|.+++|++....-...+...++.+.+.+.+ ..+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 678999999765 4566789999999999999887777778887777776654 4578885
No 389
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.05 E-value=0.00074 Score=69.90 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.++++|++|+|||||+++|+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 57899999999999999999764
No 390
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.00 E-value=0.0019 Score=68.29 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+++++|.+|+|||||+++|+..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999643
No 391
>KOG0097|consensus
Probab=97.00 E-value=0.0035 Score=56.65 Aligned_cols=116 Identities=20% Similarity=0.181 Sum_probs=73.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
|-.-.|+|.-|+|||-|+..+.... +|-.-|+ .|.+.-..--+. .+
T Consensus 11 ifkyiiigdmgvgkscllhqftekk------------fmadcph----tigvefgtriie------------------vs 56 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK------------FMADCPH----TIGVEFGTRIIE------------------VS 56 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH------------HhhcCCc----ccceecceeEEE------------------ec
Confidence 5667899999999999998874421 1211111 011111111111 12
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHHcCCc---eEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIAERIK---PVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~~~ip---~iv~iNKiD~~~ 157 (755)
+...++.++||.|...|..-+.+..|.+-+|++|.|.+......-..-|. -++.+--| ++++-||.|+..
T Consensus 57 gqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 57 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred CcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 34678999999999999999999999999999999987654333333332 22222223 456789999864
No 392
>PRK12289 GTPase RsgA; Reviewed
Probab=97.00 E-value=0.001 Score=72.32 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
.++|+|++|+|||||+++|+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999997543
No 393
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.98 E-value=0.0037 Score=55.32 Aligned_cols=45 Identities=22% Similarity=0.162 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH
Q psy16810 91 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR 137 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~ 137 (755)
+.+.+||||+..+ .....++..+|.+++++++...-...+...++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 5678999999765 44558999999999999987655555555444
No 394
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0055 Score=72.20 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-+.|+++|+.|+||||++..|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 368999999999999999999753
No 395
>KOG0448|consensus
Probab=96.96 E-value=0.0042 Score=70.44 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=79.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCcccc------------ccCcccc--cCCchhhhhhccc--------------c
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA------------KAGETRF--TDTRKDEQERCIT--------------I 59 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~------------~~g~~~~--~d~~~~E~~rgiT--------------i 59 (755)
.-.|+|.|...+||||++++||+..-..... -.|...+ +|- ..|..--.| -
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~-s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEG-SEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCC-CcccccHHHHhHHHHhcCcccccC
Confidence 4579999999999999999999875322210 1111111 111 001111111 1
Q ss_pred ccceEEEEeeeCccccccccCCCccccCCCCeEEEEEcCCCC---cccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH
Q psy16810 60 KSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGH---VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL 136 (755)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh---~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~ 136 (755)
..+.+.+.|+.+ .|..- ...+.+||.||- ..+..++-.-.-.+|..|+|+.|..-.+..-+..+
T Consensus 188 ~~sLlrV~~p~~--~csLL-----------rnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff 254 (749)
T KOG0448|consen 188 AGSLLRVFWPDD--KCSLL-----------RNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFF 254 (749)
T ss_pred cceEEEEEecCc--cchhh-----------hccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHH
Confidence 223445555411 11111 126889999998 46778888888899999999988665433333445
Q ss_pred HHHHHcCCce-EEEEeccchhh
Q psy16810 137 RQAIAERIKP-VLFMNKMDRAL 157 (755)
Q Consensus 137 ~~~~~~~ip~-iv~iNKiD~~~ 157 (755)
+.+.+. .|- +|+.||.|...
T Consensus 255 ~~vs~~-KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 255 HKVSEE-KPNIFILNNKWDASA 275 (749)
T ss_pred HHhhcc-CCcEEEEechhhhhc
Confidence 555555 555 55677889864
No 396
>KOG0081|consensus
Probab=96.94 E-value=0.00074 Score=62.45 Aligned_cols=68 Identities=28% Similarity=0.216 Sum_probs=49.8
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH----HcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
..++.|+||.|++.|.+-+.+-.|.+=|.++++|-+..-.--..+-| .|++ -.+--++++-||.|++.
T Consensus 66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 45688999999999999999999999999999998764322222222 2322 23445678899999975
No 397
>PRK10867 signal recognition particle protein; Provisional
Probab=96.91 E-value=0.0043 Score=69.13 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=38.9
Q ss_pred CCeEEEEEcCCCCcc----cHHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHc--CCce-EEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVD----FSSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAE--RIKP-VLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d----f~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~-iv~iNKiD~~ 156 (755)
.++.+.||||||..- .+.++..-.+ ..|.+++|+|+..| | ....++..+ ++++ -+++||+|-.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 467899999999643 3333322222 46788999998754 2 233334333 3443 5778999963
No 398
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.89 E-value=0.0014 Score=69.58 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+++++|.+|+|||||+++|+..
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999754
No 399
>KOG0091|consensus
Probab=96.87 E-value=0.0044 Score=57.86 Aligned_cols=68 Identities=22% Similarity=0.198 Sum_probs=50.4
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH--HHHcCCc----eEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ--AIAERIK----PVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~--~~~~~ip----~iv~iNKiD~~~ 157 (755)
..++.|+||.|+..|..-+.+..|.+=|+++|.|.+.--.-.-.+.|-. +...+-| ..+|-.|.|+..
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 5678999999999999999999999999999999887544443444432 2222312 245789999864
No 400
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.84 E-value=0.0013 Score=69.81 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.++++|+.|+|||||+++|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 67999999999999999999754
No 401
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.84 E-value=0.0041 Score=67.48 Aligned_cols=97 Identities=23% Similarity=0.239 Sum_probs=56.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC-CccccccCcccccCCchhhhhhccccccceEEEEeeeC--ccccccccCCCccc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG-IIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELD--DKDMVFITNPDQTA 85 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~--~~~~~~~~~~~~~~ 85 (755)
..++|+|.+++|||||.++|..... .+. ...+ -|+......+.+... +....+. ..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a-----~ypf-----------tTi~p~~g~v~v~d~r~d~L~~~~-----~~ 61 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA-----NPPF-----------TTIEPNAGVVNPSDPRLDLLAIYI-----KP 61 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccC-----CCCC-----------CCCCCceeEEEechhHHHHHHHHh-----CC
Confidence 5789999999999999999955432 111 1110 122222222222100 0000000 01
Q ss_pred cCCCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCC
Q psy16810 86 KNEKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~ 126 (755)
.......+.++|.||... +.....+-+|.+|+.+.|||+.+
T Consensus 62 ~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 62 EKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 111245789999999864 44577888999999999999864
No 402
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.83 E-value=0.0015 Score=71.56 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+++.++|.+|+|||||+++|+....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999987543
No 403
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.012 Score=61.42 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=39.4
Q ss_pred CeEEEEEcCCCCccc----HHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcC-Cc-eEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDF----SSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAER-IK-PVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df----~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip-~iv~iNKiD~~~ 157 (755)
++.+.||||||..-. +.++...++ ..|-.+||+||+.+.+ ....++..++ ++ -=++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~----d~~~~~~~f~~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK----DMIEIITNFKDIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH----HHHHHHHHhCCCCCCEEEEEeecCCC
Confidence 578899999999743 333333333 2366899999875432 2223344433 33 367799999853
No 404
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.82 E-value=0.0025 Score=61.16 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred HHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc--CCceEEEEeccchh
Q psy16810 108 VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--RIKPVLFMNKMDRA 156 (755)
Q Consensus 108 ~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~iv~iNKiD~~ 156 (755)
+.+++..+|.+++|+|+..+...+...+.+.+... ++|+|+++||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 56789999999999999988766666666666543 48999999999984
No 405
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.81 E-value=0.0012 Score=68.83 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
+..+++|++|+|||||+++|+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 5788999999999999999965
No 406
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.78 E-value=0.01 Score=59.04 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=95.4
Q ss_pred cCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeee
Q psy16810 590 SEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFE 669 (755)
Q Consensus 590 ~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~ 669 (755)
.+.-+.||.+.+.-.- .-...++|-++.|=..|..+|+..|+.+-+.|...++|.+|-+.+|.+...|.+..++|.+
T Consensus 88 ~~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~ 164 (204)
T TIGR00257 88 RGSDLGDIGAVVVRYF---GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIK 164 (204)
T ss_pred HHCCCCcEEEEEEEec---CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEe
Confidence 4667888888887432 1123566778889999999999999999999999999999999999999999999999988
Q ss_pred eeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeE
Q psy16810 670 EMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQ 708 (755)
Q Consensus 670 ~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~ 708 (755)
.+..+ .++++..+|..+.-.|...|..+|+|+..+.
T Consensus 165 ~~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 165 SNFSN---NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred eEecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 77643 3799999999999999999999999987643
No 407
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.78 E-value=0.0013 Score=70.94 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGET 43 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~ 43 (755)
..++++|-+|+|||||+++|+....+..+..+|.|
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T 167 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT 167 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee
Confidence 55999999999999999999887776555555543
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.74 E-value=0.0064 Score=65.95 Aligned_cols=133 Identities=16% Similarity=0.212 Sum_probs=71.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCcc-ccccCcccccCCch---hhhhh------ccccccceEEEEeeeCccccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA-GAKAGETRFTDTRK---DEQER------CITIKSTAISMYFELDDKDMV 76 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~d~~~---~E~~r------giTi~~~~~~~~~~~~~~~~~ 76 (755)
+-|+|+++|+.|+||||.+-.|-+...... +.+.| --.+|++- .||-+ |+.+....-.-.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el-------- 272 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKEL-------- 272 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHH--------
Confidence 479999999999999999998865544211 11111 11255543 34443 2333211100000
Q ss_pred cccCCCccccCCCCeEEEEEcCCCCcccH----HHHHHHhhhc--CcEEEEEcCCCcceehHHHHHHHHHHcCC-ce-EE
Q psy16810 77 FITNPDQTAKNEKGFLINLIDSPGHVDFS----SEVTAALRVT--DGALVVVDCVSGVCVQTETVLRQAIAERI-KP-VL 148 (755)
Q Consensus 77 ~~~~~~~~~~~~~~~~i~lIDtPGh~df~----~~~~~al~~~--D~ailVvda~~g~~~qt~~~~~~~~~~~i-p~-iv 148 (755)
........++.+.||||.|+.-.. .++..-+..+ .-.-||++++. +.+.+-....+++. |. =+
T Consensus 273 -----~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~----K~~dlkei~~~f~~~~i~~~ 343 (407)
T COG1419 273 -----AEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT----KYEDLKEIIKQFSLFPIDGL 343 (407)
T ss_pred -----HHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc----chHHHHHHHHHhccCCccee
Confidence 001111236789999999995443 3444444443 34567787754 33333334444443 44 45
Q ss_pred EEeccchhh
Q psy16810 149 FMNKMDRAL 157 (755)
Q Consensus 149 ~iNKiD~~~ 157 (755)
+++|+|-..
T Consensus 344 I~TKlDET~ 352 (407)
T COG1419 344 IFTKLDETT 352 (407)
T ss_pred EEEcccccC
Confidence 689999863
No 409
>KOG0083|consensus
Probab=96.72 E-value=0.00047 Score=61.76 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=53.9
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---CCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---RIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~iv~iNKiD~~ 156 (755)
...++.++||.|+..|.+-+-+..|.+|+.+++.|...-..-.....| .+..++ .+.+.++-||+|..
T Consensus 45 ~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred cEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 467899999999999999999999999999999998776554444444 334443 45778899999985
No 410
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.71 E-value=0.0026 Score=62.01 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+++++|.+++|||||+++|+..
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999653
No 411
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.68 E-value=0.0025 Score=60.97 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=41.3
Q ss_pred HHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 107 EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 107 ~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.....++.+|.+++|+|+.++...+...+.+.+...+.|+++++||+|+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 44556677999999999998877777777666667789999999999984
No 412
>PRK13796 GTPase YqeH; Provisional
Probab=96.67 E-value=0.0022 Score=70.50 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+++.++|.+|+|||||+++|+...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 589999999999999999998643
No 413
>KOG1486|consensus
Probab=96.67 E-value=0.0023 Score=63.91 Aligned_cols=83 Identities=28% Similarity=0.380 Sum_probs=56.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-.|+++|-+-+|||||+..+....... ....++ |...-..-+.|
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Sea-----A~yeFT-----------TLtcIpGvi~y-------------------- 106 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEA-----ASYEFT-----------TLTCIPGVIHY-------------------- 106 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhh-----hceeee-----------EEEeecceEEe--------------------
Confidence 458999999999999999884322111 111111 11111222334
Q ss_pred CCeEEEEEcCCCCccc-------HHHHHHHhhhcCcEEEEEcCCCc
Q psy16810 89 KGFLINLIDSPGHVDF-------SSEVTAALRVTDGALVVVDCVSG 127 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df-------~~~~~~al~~~D~ailVvda~~g 127 (755)
++..|.++|.||...- -+++++..+-+|.+++|+||..+
T Consensus 107 ~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 107 NGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 3778999999999653 35677888999999999999875
No 414
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0058 Score=63.26 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCeEEEEEcCCCCcccHHHHHH-HhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTA-ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALL 158 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~-al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~ 158 (755)
.+|.+.||.|-|--. ... -...+|..++|.=+-.|-..|.... --+.+-=|+||||.|+.++
T Consensus 142 aG~DvIIVETVGvGQ----sev~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~~A 204 (323)
T COG1703 142 AGYDVIIVETVGVGQ----SEVDIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRKGA 204 (323)
T ss_pred cCCCEEEEEecCCCc----chhHHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChhhH
Confidence 478899999998743 222 2357899999988888887776542 1222344899999998764
No 415
>PRK11568 hypothetical protein; Provisional
Probab=96.60 E-value=0.016 Score=57.74 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=95.6
Q ss_pred ccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceee
Q psy16810 589 LSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 668 (755)
Q Consensus 589 l~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~ 668 (755)
|.+.-+.||.+.++-.- .-...+.|-++.|=..|.++|+.+|+.+-..|...+.|++|-+.+|.+...|.+..+.|.
T Consensus 87 L~~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~ 163 (204)
T PRK11568 87 LMGSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIV 163 (204)
T ss_pred HHHCCCccEEEEEEEEc---CCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEE
Confidence 34667888888887531 112356667888999999999999999999999999999999999999999999999998
Q ss_pred eeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeE
Q psy16810 669 EEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQ 708 (755)
Q Consensus 669 ~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~ 708 (755)
+.+..+ .++++..+|..+.-.|...|..+|+|+..+.
T Consensus 164 ~~~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 164 NSEYQA---FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred cceecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 877633 3788999999999999999999999987654
No 416
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.59 E-value=0.01 Score=63.56 Aligned_cols=158 Identities=20% Similarity=0.145 Sum_probs=81.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCcc----ccccCcccccCC---chhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIA----GAKAGETRFTDT---RKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~----~~~~g~~~~~d~---~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
++...|-|--|||||||+++|+....--. -.+-|... .|. ....-+.=..+..+++-+.-+........
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvg-ID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~--- 76 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVG-IDGGALLSDTGEEVVELTNGCICCTVRDDLLPALE--- 76 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCcccc-ccCCCccccCCccEEEeCCceEEEeccchhHHHHH---
Confidence 45677889999999999999998755110 01222211 110 11111111222223332221100000000
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHH--------HHHHHhhhcCcEEEEEcCCCcceehH---HHHHHHHHHcCCceEEE
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSS--------EVTAALRVTDGALVVVDCVSGVCVQT---ETVLRQAIAERIKPVLF 149 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~--------~~~~al~~~D~ailVvda~~g~~~qt---~~~~~~~~~~~ip~iv~ 149 (755)
.-.. ..+.....+|-|-|..+=.. ...+..-..|++|-||||........ .....|+. .-=+++
T Consensus 77 -~L~~-~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~iv 151 (323)
T COG0523 77 -RLLR-RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIV 151 (323)
T ss_pred -HHHh-ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEE
Confidence 0000 11235678899999866322 22233345688999999988765443 22223332 233899
Q ss_pred EeccchhhhcccCCHHHHHHHHHHHhhhceee
Q psy16810 150 MNKMDRALLELQLDAEDLYQTFQRIVENVNVI 181 (755)
Q Consensus 150 iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~ 181 (755)
+||.|+.. .++ ...++..+..+|..
T Consensus 152 lNK~Dlv~------~~~-l~~l~~~l~~lnp~ 176 (323)
T COG0523 152 LNKTDLVD------AEE-LEALEARLRKLNPR 176 (323)
T ss_pred EecccCCC------HHH-HHHHHHHHHHhCCC
Confidence 99999954 343 55666666666543
No 417
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.58 E-value=0.014 Score=61.33 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+..|+|+|.+|||||||+++|+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999875
No 418
>KOG1707|consensus
Probab=96.55 E-value=0.0051 Score=68.64 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=72.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.-|+++|.-|+|||||+=+|+...=.-.- .+.++ -|||-.... -
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~V-----P~rl~--------~i~IPadvt-----------------------P 53 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAV-----PRRLP--------RILIPADVT-----------------------P 53 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccc-----cccCC--------ccccCCccC-----------------------c
Confidence 34789999999999999999764321110 01111 144432111 0
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce---ehHHH--HHHHHH--HcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC---VQTET--VLRQAI--AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~---~qt~~--~~~~~~--~~~ip~iv~iNKiD~~~ 157 (755)
......++||+-..+=...+...++.||.+.+|-++.+.-. .||.. ++++.. -.++|+|+|-||.|...
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 23458899999777766677889999999999987665321 23322 222221 14579999999999854
No 419
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.47 E-value=0.0063 Score=59.16 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE-EEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-v~iNKiD~~ 156 (755)
.+|.+.+||||+..+ ......+ ..+|.+++|+.+..--...+...++.+.+.+++++ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 468899999999753 3444444 68999999998887777788889999999999874 789999864
No 420
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.45 E-value=0.0029 Score=61.74 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=44.7
Q ss_pred CCCC-cccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 98 SPGH-VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 98 tPGh-~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
=||| ...+.++..++..+|.+++|+|+.++.......++... .+.|+++++||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 3777 45678889999999999999999987765555544432 468999999999984
No 421
>PRK00098 GTPase RsgA; Reviewed
Probab=96.45 E-value=0.004 Score=66.53 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.++++|++|+|||||+++|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999643
No 422
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.41 E-value=0.006 Score=58.35 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHH
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++++++|.+++|||||+++|..
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999963
No 423
>KOG0393|consensus
Probab=96.40 E-value=0.003 Score=62.10 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh--HHHHHHHHHHc--CCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ--TETVLRQAIAE--RIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q--t~~~~~~~~~~--~ip~iv~iNKiD~~ 156 (755)
++...+.|+||.|..||.+-..-+...+|..+++.+........ ...-+.....+ ++|+|+|-+|.|+-
T Consensus 50 g~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 50 GKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred CCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 45678999999999999774445778899998888765543222 11112233333 58999999999985
No 424
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.0091 Score=63.93 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=56.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..+||+|-+|+|||||.++|......+ ++..++ ..|...|+. ..+. ..+..-..........
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~-----aNYPF~---TIePN~Giv--------~v~d--~rl~~L~~~~~c~~k~ 64 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEI-----ANYPFC---TIEPNVGVV--------YVPD--CRLDELAEIVKCPPKI 64 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccc-----cCCCcc---cccCCeeEE--------ecCc--hHHHHHHHhcCCCCcE
Confidence 478999999999999999996543221 222111 122222221 1110 0000000000000111
Q ss_pred CCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCC
Q psy16810 89 KGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~ 126 (755)
-...+.|+|.+|.+. .-..-..-+|.+|+.+.|||+.+
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 245689999999853 44466778899999999999975
No 425
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.36 E-value=0.0036 Score=66.14 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=45.2
Q ss_pred CCCc-ccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 99 PGHV-DFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 99 PGh~-df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
|||. ....++...+..+|.+++|+|+..+.......+.+.+ .+.|+|+++||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 8884 5678899999999999999999887666555554444 378999999999984
No 426
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.28 E-value=0.0088 Score=64.44 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-----------eehHHHHHHHHHH----cCCceEEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-----------CVQTETVLRQAIA----ERIKPVLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-----------~~qt~~~~~~~~~----~~ip~iv~iNKi 153 (755)
++..+.++|++|...+.+-.......++++++|||.++-- ...+...++.+.. .+.|+++|+||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 4788999999999999899999999999999999998631 2233344444333 468999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 239 D~f~ 242 (317)
T cd00066 239 DLFE 242 (317)
T ss_pred HHHH
Confidence 9864
No 427
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.26 E-value=0.003 Score=69.99 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=26.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGII 35 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i 35 (755)
.+++|+|+|+.++|||||+++|....|..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999998876655
No 428
>KOG1534|consensus
Probab=96.18 E-value=0.016 Score=56.72 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=45.1
Q ss_pred EEEEEcCCCCccc------HHHHHHHhhhcC---cEEEEEcCCCcc-----eehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 92 LINLIDSPGHVDF------SSEVTAALRVTD---GALVVVDCVSGV-----CVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 92 ~i~lIDtPGh~df------~~~~~~al~~~D---~ailVvda~~g~-----~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.+.++||||+.+. +.+..+.|..-+ +++.++|+.-=+ .......+..+....+|.|=+++|||+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 4567999998653 566777776654 467777764322 12233445566778899999999999964
No 429
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.17 E-value=0.021 Score=48.52 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=48.6
Q ss_pred EEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--
Q psy16810 293 MYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV-- 370 (755)
Q Consensus 293 ~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~-- 370 (755)
|.|.++|.....|. ++.+||-+|++++|+.+.+++.+ + -++.-+|..|... ..++++|.+|+-|.|.
T Consensus 3 ~~V~~vf~~~~~g~-vag~kV~~G~l~~g~~v~vlr~~----~--~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~ 71 (84)
T cd03692 3 AEVRAVFKISKVGN-IAGCYVTDGKIKRNAKVRVLRNG----E--VIYEGKISSLKRF----KDDVKEVKKGYECGITLE 71 (84)
T ss_pred EEEEEEEECCCCcE-EEEEEEEECEEeCCCEEEEEcCC----C--EEEEEEEEEEEEc----CcccCEECCCCEEEEEEe
Confidence 34444554445576 89999999999999999998742 1 0122246666533 4779999999999884
Q ss_pred cccc
Q psy16810 371 GVDQ 374 (755)
Q Consensus 371 gl~~ 374 (755)
++++
T Consensus 72 ~~~d 75 (84)
T cd03692 72 NFND 75 (84)
T ss_pred Cccc
Confidence 4443
No 430
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.12 E-value=0.014 Score=63.39 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=54.8
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-----------ceehHHHHHHHHHH----cCCceEEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-----------VCVQTETVLRQAIA----ERIKPVLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-----------~~~qt~~~~~~~~~----~~ip~iv~iNKi 153 (755)
++..+.++|..|...+.+-+......+|++++|||.++- -...+...|+.+.. .+.|+++|+||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 467899999999999999999999999999999999862 12344455554433 467999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|...
T Consensus 262 D~~~ 265 (342)
T smart00275 262 DLFE 265 (342)
T ss_pred HhHH
Confidence 9864
No 431
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.08 E-value=0.026 Score=56.61 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=48.7
Q ss_pred CeEEEEEcCC-CCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC-CceEEEEeccchh
Q psy16810 90 GFLINLIDSP-GHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-IKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtP-Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip~iv~iNKiD~~ 156 (755)
.+.+.++||= |..-|.+- -.+.+|..|+|+|.+.--..-.+++-+++.+.+ .++.+++||.|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4678888984 44444432 346789999999998766667788888999999 5778899999964
No 432
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.07 E-value=0.034 Score=48.34 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=52.3
Q ss_pred EEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccc
Q psy16810 293 MYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGV 372 (755)
Q Consensus 293 ~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl 372 (755)
++|.....+...|. ++.+-|.+|+|+.||.+.... . .+ +|..++-..| .++++|.||+.|-|.|+
T Consensus 3 g~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G~-~--~g--------kVr~l~d~~g---~~v~~a~Ps~~V~I~G~ 67 (95)
T cd03702 3 GVVIESKLDKGRGP-VATVLVQNGTLKVGDVLVAGT-T--YG--------KVRAMFDENG---KRVKEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEEcc-c--cc--------EEEEEECCCC---CCCCEECCCCcEEEcCC
Confidence 56666667788888 899999999999999987532 1 11 5666655554 67999999999999998
Q ss_pred cce
Q psy16810 373 DQF 375 (755)
Q Consensus 373 ~~~ 375 (755)
++.
T Consensus 68 ~~~ 70 (95)
T cd03702 68 KGV 70 (95)
T ss_pred CCC
Confidence 864
No 433
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.06 E-value=0.0077 Score=59.18 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=44.8
Q ss_pred CeEEEEEcCCCCcccHHH-----HHHHhhhcCcEEEEEcCCCccee-hHHHHHHHHHHcCCceEEEEeccchhhhcccCC
Q psy16810 90 GFLINLIDSPGHVDFSSE-----VTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAERIKPVLFMNKMDRALLELQLD 163 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~-----~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~ 163 (755)
.....||-|.|-.+-..- .....-..+..|.|||+..-... ..... ...+...-=++++||.|+...
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~--~~~Qi~~ADvIvlnK~D~~~~----- 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL--LREQIAFADVIVLNKIDLVSD----- 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH--HHHHHCT-SEEEEE-GGGHHH-----
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh--hhhcchhcCEEEEeccccCCh-----
Confidence 346678999997654333 12223355889999999653211 11111 233445556899999999752
Q ss_pred HHHHHHHHHHHhhhce
Q psy16810 164 AEDLYQTFQRIVENVN 179 (755)
Q Consensus 164 ~~~~~~~~~~ii~~v~ 179 (755)
++..+.+...+..+|
T Consensus 157 -~~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 157 -EQKIERVREMIRELN 171 (178)
T ss_dssp -H--HHHHHHHHHHH-
T ss_pred -hhHHHHHHHHHHHHC
Confidence 222345555555554
No 434
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.95 E-value=0.02 Score=62.40 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=73.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCC-c--hhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDT-R--KDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~-~--~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
..-.|-++|--||||||.+..|..+-.. ...+.+-. -.|. + ..||-+...-+..+-.|.-.....+..-.. ..-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllV-aaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak-~al 175 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLV-AADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAK-AAL 175 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEE-ecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHH-HHH
Confidence 3456889999999999999999655332 11111100 1221 1 224443333322222111100000000000 000
Q ss_pred cccCCCCeEEEEEcCCCCcc----cHHHHHH--HhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchh
Q psy16810 84 TAKNEKGFLINLIDSPGHVD----FSSEVTA--ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRA 156 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~d----f~~~~~~--al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~ 156 (755)
.......+.+.+|||.|--. .+.|+.. ..-..|=.++|+||..|- ...-...+-...+++ =|+++|+|-.
T Consensus 176 ~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 176 EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhcCCceEEEEcccCC
Confidence 11122467899999999743 4444332 334558899999998863 322222233344666 5779999964
No 435
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.89 E-value=0.055 Score=58.20 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=70.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCC----ccccccCcccccCCchhhhh--hccccccceEEEEeeeCccc----cc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGI----IAGAKAGETRFTDTRKDEQE--RCITIKSTAISMYFELDDKD----MV 76 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~----i~~~~~g~~~~~d~~~~E~~--rgiTi~~~~~~~~~~~~~~~----~~ 76 (755)
+++...+.|-.|||||||+++|+....- +-..+-|... .|..-.+.. .-+++..+++.+.-. +.. ..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~-iD~~ll~~~~~~v~eL~~GCiCCs~~--~~l~~~l~~ 79 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS-VDDQLIGDRATQIKTLTNGCICCSRS--NELEDALLD 79 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCcc-ccHHHHhCcCceEEEECCCEEEEccC--chHHHHHHH
Confidence 6788999999999999999999865321 0011333321 222111110 011222222221110 000 00
Q ss_pred cccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHh---------hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE
Q psy16810 77 FITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAAL---------RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV 147 (755)
Q Consensus 77 ~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al---------~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i 147 (755)
..+. ...........+|.|-|-.+-. .+...+ -..|++|.|||+.......... .....+...-=+
T Consensus 80 l~~~---~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~AD~ 154 (318)
T PRK11537 80 LLDN---LDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADR 154 (318)
T ss_pred HHHH---HhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhCCE
Confidence 0000 0000012456789999998743 233332 1348999999998754321111 011122233448
Q ss_pred EEEeccchhh
Q psy16810 148 LFMNKMDRAL 157 (755)
Q Consensus 148 v~iNKiD~~~ 157 (755)
+++||+|+..
T Consensus 155 IvlnK~Dl~~ 164 (318)
T PRK11537 155 ILLTKTDVAG 164 (318)
T ss_pred EEEeccccCC
Confidence 9999999864
No 436
>KOG1533|consensus
Probab=95.87 E-value=0.0059 Score=60.71 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=45.4
Q ss_pred CeEEEEEcCCCCccc------HHHHHHHhhhcCcEEEEEcCCCcc---eeh-----HHHHHHHHHHcCCceEEEEeccch
Q psy16810 90 GFLINLIDSPGHVDF------SSEVTAALRVTDGALVVVDCVSGV---CVQ-----TETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 90 ~~~i~lIDtPGh~df------~~~~~~al~~~D~ailVvda~~g~---~~q-----t~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
..+..++|+||+++| ...+.+-|+..|.-+++|.-.+.. .+. -...+..+..+.+|.+=++.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 346788999999875 456777787888766655443332 111 112234456678899999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 64
No 437
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.85 E-value=0.0067 Score=64.46 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=45.2
Q ss_pred CCCCc-ccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 98 SPGHV-DFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 98 tPGh~-df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
=|||- .-..++...+..+|.+|+|+|+..+.......+..... +.|+++++||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 48884 45677888999999999999999877766655544332 78999999999984
No 438
>PRK13695 putative NTPase; Provisional
Probab=95.82 E-value=0.013 Score=57.17 Aligned_cols=38 Identities=3% Similarity=0.113 Sum_probs=30.0
Q ss_pred cEEEEEc---CCCcceehHHHHHHHHHHcCCceEEEEeccc
Q psy16810 117 GALVVVD---CVSGVCVQTETVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 117 ~ailVvd---a~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD 154 (755)
.=++++| ..+....+....+..+.+.+.|+++++||..
T Consensus 97 ~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 97 ADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred CCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 3457899 6666677777888888889999999999853
No 439
>KOG1491|consensus
Probab=95.80 E-value=0.023 Score=59.70 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=58.5
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccc-cccC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMV-FITN 80 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~-~~~~ 80 (755)
|++..+...|+|+|-+++||||+.++|....- .+++..+. ||+.........+ .-.. ....
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a-----~~~NfPF~-----------TIdPn~a~V~v~d--~Rfd~l~~~ 75 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKA-----GAANFPFC-----------TIDPNEARVEVPD--SRFDLLCPI 75 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCC-----CccCCCcc-----------eeccccceeecCc--hHHHHHHHh
Confidence 44445566899999999999999999943211 12222222 2222221111100 0000 0000
Q ss_pred CCccccCCCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCC
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~ 126 (755)
. .....-.-.+++.|+.|.+. +-....+-+|.+|+.+-||++.+
T Consensus 76 Y--~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 76 Y--GPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred c--CCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 0 00111245699999999853 33345667899999999999865
No 440
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.73 E-value=0.077 Score=57.73 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=75.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCc--cccccCcccccCCchhhhhhccccccc--------eEEEEeeeCccccccc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGII--AGAKAGETRFTDTRKDEQERCITIKST--------AISMYFELDDKDMVFI 78 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i--~~~~~g~~~~~d~~~~E~~rgiTi~~~--------~~~~~~~~~~~~~~~~ 78 (755)
.=|+++|++-+||||++.++....-.- .+. ..+.|..|..|+. ..|-||-++ ++.+..
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~-~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l---------- 85 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDE-YERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITL---------- 85 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCH-HHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEe----------
Confidence 568999999999999999997654321 110 0111223333321 113333211 111111
Q ss_pred cCCCccccCCCCeEEEEEcCCCC-------------------------cccHHHHHHHhhhc--C----cEEEEEcCCCc
Q psy16810 79 TNPDQTAKNEKGFLINLIDSPGH-------------------------VDFSSEVTAALRVT--D----GALVVVDCVSG 127 (755)
Q Consensus 79 ~~~~~~~~~~~~~~i~lIDtPGh-------------------------~df~~~~~~al~~~--D----~ailVvda~~g 127 (755)
.++-..++-||||=|+ .-|.....-+-+.. | |.|+--|++-+
T Consensus 86 -------~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~ 158 (492)
T PF09547_consen 86 -------DDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSIT 158 (492)
T ss_pred -------cCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCcc
Confidence 1234678889999988 12444444444422 3 55666677644
Q ss_pred c------eehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 128 V------CVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 128 ~------~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
- ....+++...+++.|.|+++++|-.+=
T Consensus 159 dipRe~Y~eAEervI~ELk~igKPFvillNs~~P 192 (492)
T PF09547_consen 159 DIPRENYVEAEERVIEELKEIGKPFVILLNSTKP 192 (492)
T ss_pred CCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 3 234567888999999999999999874
No 441
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.64 E-value=0.034 Score=42.97 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHhh-hcCcEEEEEcCCCcceehHH---HHHHHH-HHc-CCceEEEEeccc
Q psy16810 106 SEVTAALR-VTDGALVVVDCVSGVCVQTE---TVLRQA-IAE-RIKPVLFMNKMD 154 (755)
Q Consensus 106 ~~~~~al~-~~D~ailVvda~~g~~~qt~---~~~~~~-~~~-~ip~iv~iNKiD 154 (755)
.+.+.||+ ..+.+++++|.++......+ .+++.. ..+ +.|.++|+||+|
T Consensus 4 ~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 4 MQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34566775 55788999999875433222 233333 344 789999999998
No 442
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.60 E-value=0.077 Score=53.62 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=40.7
Q ss_pred CCeEEEEEcCCCCcccHHHHHHH--hhhcCcEEEEEcCCCcceehHHHHHHHHHHc----CCce-EEEEeccch
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAA--LRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKP-VLFMNKMDR 155 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~a--l~~~D~ailVvda~~g~~~qt~~~~~~~~~~----~ip~-iv~iNKiD~ 155 (755)
+.|.+.+|||||......- ... ++.+|.+++|++...--..-...+++...+. +++. .+++||+|.
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 4689999999986521111 122 3489999999977542222234444444443 4444 489999985
No 443
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.57 E-value=0.026 Score=61.38 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.+++...+.|-.|||||||+++|+..
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhc
Confidence 35677889999999999999999864
No 444
>KOG0447|consensus
Probab=95.49 E-value=0.15 Score=56.51 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=86.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCc------------------------ccccCCchh---------
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGE------------------------TRFTDTRKD--------- 51 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~------------------------~~~~d~~~~--------- 51 (755)
.++.+.|+++|.--+|||+.++.+... ....+ ..|. .+-.|-.++
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA-RIFPR-GSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA-RIFPR-GSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh-ccCcC-CCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 356788999999999999999977432 22211 1111 011111111
Q ss_pred -------hhhhccccccceEEEEeeeCccccccccCCCccccCCCCeEEEEEcCCCCcc-------------cHHHHHHH
Q psy16810 52 -------EQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVD-------------FSSEVTAA 111 (755)
Q Consensus 52 -------E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~d-------------f~~~~~~a 111 (755)
...-|-|++..++++..+.. +--+..|+|.||... .....-..
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGP-----------------gLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKay 445 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGP-----------------GLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAY 445 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCC-----------------CcceeEEecCCchhhhhcccccccchHHHHHHHHHH
Confidence 22347888888888776411 245789999999832 22233344
Q ss_pred hhhcCcEEEEE-cCCCcce-ehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHHHHHHHHH
Q psy16810 112 LRVTDGALVVV-DCVSGVC-VQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDLYQTFQR 173 (755)
Q Consensus 112 l~~~D~ailVv-da~~g~~-~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~~~~~~~~ 173 (755)
+....++|++| |++-..+ .-.-.+..++.-.|...|+|++|.|+...++ .++..+.+.+.+
T Consensus 446 M~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknl-A~PdRI~kIleG 508 (980)
T KOG0447|consen 446 MQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNV-ASPSRIQQIIEG 508 (980)
T ss_pred hcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhcc-CCHHHHHHHHhc
Confidence 55667777776 2221111 1112234566777888999999999976443 345544444333
No 445
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.49 E-value=0.028 Score=70.99 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=28.0
Q ss_pred hhcCcEEEEEcCCCccee---hH--------HHHHHHHHHc--CCceEEEEeccchh
Q psy16810 113 RVTDGALVVVDCVSGVCV---QT--------ETVLRQAIAE--RIKPVLFMNKMDRA 156 (755)
Q Consensus 113 ~~~D~ailVvda~~g~~~---qt--------~~~~~~~~~~--~ip~iv~iNKiD~~ 156 (755)
+-.||+|++||+.+=... +- .++.+....+ ++|+-|+++|||+.
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 346999999998754321 10 1112222333 56999999999986
No 446
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.38 E-value=0.086 Score=45.13 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcccHHH-HHHHhhhcCcEEEEEcCCCcceehHHHH
Q psy16810 92 LINLIDSPGHVDFSSE-VTAALRVTDGALVVVDCVSGVCVQTETV 135 (755)
Q Consensus 92 ~i~lIDtPGh~df~~~-~~~al~~~D~ailVvda~~g~~~qt~~~ 135 (755)
.+.++|+||..+.... ....+..+|.++++++............
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 4678999997664321 2678889999999999887655554444
No 447
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=95.22 E-value=0.11 Score=45.31 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=51.2
Q ss_pred EEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccc
Q psy16810 293 MYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGV 372 (755)
Q Consensus 293 ~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl 372 (755)
+.|.....+...|. ++.+-|++|+|+.||.+..... .+ +|..++-.. -..+.+|.||+.+-+.|+
T Consensus 3 g~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G~~---~G--------kVr~~~d~~---g~~v~~a~Ps~~v~i~g~ 67 (95)
T cd03701 3 GTVIESKLDKGRGP-VATVIVQNGTLKKGDVIVAGGT---YG--------KIRTMVDEN---GKALLEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCe-eEEEEEEcCeEecCCEEEECCc---cc--------eEEEEECCC---CCCccccCCCCCEEEeee
Confidence 55666667788897 8999999999999999975321 11 455554443 457999999999999888
Q ss_pred ccee
Q psy16810 373 DQFL 376 (755)
Q Consensus 373 ~~~~ 376 (755)
++..
T Consensus 68 ~~~p 71 (95)
T cd03701 68 KDVP 71 (95)
T ss_pred cCCc
Confidence 7643
No 448
>KOG2485|consensus
Probab=95.12 E-value=0.029 Score=58.38 Aligned_cols=75 Identities=24% Similarity=0.234 Sum_probs=45.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccc-cccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAG-AKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
.-|+-++|-+|.|||||++++-.......+ ...| -+-|+|...+..--..
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG-----------~~pGVT~~V~~~iri~------------------ 193 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVG-----------AEPGVTRRVSERIRIS------------------ 193 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceecc-----------CCCCceeeehhheEec------------------
Confidence 458999999999999999999665543331 1122 1346777655422111
Q ss_pred CCCCeEEEEEcCCCCc-ccHHHHHHHhh
Q psy16810 87 NEKGFLINLIDSPGHV-DFSSEVTAALR 113 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~-df~~~~~~al~ 113 (755)
..-.+.+|||||.. .=+...+.+|.
T Consensus 194 --~rp~vy~iDTPGil~P~I~~~e~~lK 219 (335)
T KOG2485|consen 194 --HRPPVYLIDTPGILVPSIVDVEDGLK 219 (335)
T ss_pred --cCCceEEecCCCcCCCCCCCHHHhhh
Confidence 23458999999972 22333444444
No 449
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.08 E-value=0.02 Score=56.81 Aligned_cols=57 Identities=14% Similarity=-0.024 Sum_probs=42.4
Q ss_pred CCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 99 PGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 99 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
|.+..|...+...++.+|++++|+|+.+........++. ...+.|+++++||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCC
Confidence 444457888888999999999999998755433334322 345789999999999853
No 450
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.08 E-value=0.039 Score=53.82 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=33.8
Q ss_pred CcEEEEEcCCCcceehHHHHHHH--HHHcCCceEEEEeccchh
Q psy16810 116 DGALVVVDCVSGVCVQTETVLRQ--AIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 116 D~ailVvda~~g~~~qt~~~~~~--~~~~~ip~iv~iNKiD~~ 156 (755)
|.+++|+|+..........+.+. ....+.|+|+++||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999887777766666 344678999999999994
No 451
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.08 E-value=0.11 Score=54.98 Aligned_cols=136 Identities=22% Similarity=0.226 Sum_probs=73.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCccc---ccCCchhhhhh-ccccccceEEEEeeeCccc-cccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETR---FTDTRKDEQER-CITIKSTAISMYFELDDKD-MVFI 78 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~---~~d~~~~E~~r-giTi~~~~~~~~~~~~~~~-~~~~ 78 (755)
+.-.|.++|-.|+||||.+..|.++-..-... -+|.|. -.++....-+| |+.+-+ -.+. .++. ..|.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~----~~~G-~DpAaVafD 212 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS----GKEG-ADPAAVAFD 212 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc----cCCC-CCcHHHHHH
Confidence 35678999999999999999997654211100 122210 01122211111 332211 1110 0000 0000
Q ss_pred cCCCccccCCCCeEEEEEcCCCC----cccHHHHHHHhhhcC---c-----EEEEEcCCCcceehHHHHHHHHHHcC--C
Q psy16810 79 TNPDQTAKNEKGFLINLIDSPGH----VDFSSEVTAALRVTD---G-----ALVVVDCVSGVCVQTETVLRQAIAER--I 144 (755)
Q Consensus 79 ~~~~~~~~~~~~~~i~lIDtPGh----~df~~~~~~al~~~D---~-----ailVvda~~g~~~qt~~~~~~~~~~~--i 144 (755)
- -......++.+.||||.|- .+.+.|...-.|+++ . .++|+||..|-. .+.||+.++ +
T Consensus 213 A---i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav 284 (340)
T COG0552 213 A---IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAV 284 (340)
T ss_pred H---HHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhc
Confidence 0 0011224788999999997 567777777766663 3 778889988742 334555443 3
Q ss_pred ce-EEEEeccch
Q psy16810 145 KP-VLFMNKMDR 155 (755)
Q Consensus 145 p~-iv~iNKiD~ 155 (755)
++ =++++|+|-
T Consensus 285 ~l~GiIlTKlDg 296 (340)
T COG0552 285 GLDGIILTKLDG 296 (340)
T ss_pred CCceEEEEeccc
Confidence 44 567999994
No 452
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.07 E-value=0.023 Score=54.38 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCcceehHHHHH-HHHHHcCCceEEEEeccchh
Q psy16810 116 DGALVVVDCVSGVCVQTETVL-RQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 116 D~ailVvda~~g~~~qt~~~~-~~~~~~~ip~iv~iNKiD~~ 156 (755)
|.+++|+|+.++...+...+. ..+...++|+|+++||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999887766655555 45667789999999999984
No 453
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.00 E-value=0.025 Score=44.84 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~ 30 (755)
+..|.|+.|+|||||++++.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999955
No 454
>KOG2423|consensus
Probab=94.97 E-value=0.019 Score=61.14 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGET 43 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~ 43 (755)
++..-|++||-+|+||||+++.|-...-.-...-+|.|
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET 342 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET 342 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc
Confidence 35678999999999999999999443322222344544
No 455
>KOG1424|consensus
Probab=94.85 E-value=0.026 Score=62.36 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=27.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETR 44 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~ 44 (755)
.-+||++|-+|+||||++++|.....+-.+..+|+|.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTK 350 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTK 350 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcc
Confidence 5799999999999999999997654433333455543
No 456
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.041 Score=53.92 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=58.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhh----hccccccceEEEEeeeCccccccccCCCcc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQE----RCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~----rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+|.|+|++||||||++..|....+..+-. .| |....+.. .|..++
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hls-tg-----d~~r~~~~~~t~lg~~~k------------------------ 50 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLD-TG-----DILRAAIAERTELGEEIK------------------------ 50 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEc-Hh-----HHhHhhhccCChHHHHHH------------------------
Confidence 378999999999999999998876654310 01 11111111 111111
Q ss_pred ccCCCCeEEEEEcCCCCc--c-cHHHHHHHhhhcCcE-EEEEcCCCcceehHHHHHHHHHHcCCceEEEE
Q psy16810 85 AKNEKGFLINLIDSPGHV--D-FSSEVTAALRVTDGA-LVVVDCVSGVCVQTETVLRQAIAERIKPVLFM 150 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~--d-f~~~~~~al~~~D~a-ilVvda~~g~~~qt~~~~~~~~~~~ip~iv~i 150 (755)
.++|-...+ + ....+...+..+|+. .+++|.-.-...|.+.+-+.+..+|.+.-.++
T Consensus 51 ---------~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~ 111 (178)
T COG0563 51 ---------KYIDKGELVPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVI 111 (178)
T ss_pred ---------HHHHcCCccchHHHHHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEE
Confidence 023433321 1 223445556666744 57788877777788777777777775554443
No 457
>KOG1673|consensus
Probab=94.62 E-value=0.11 Score=48.47 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=73.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+++|....|||||+-..... . -| .+-++..|+..--..+++. +
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~---~----------~d-e~~~q~~GvN~mdkt~~i~--------------------~ 66 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQN---E----------YD-EEYTQTLGVNFMDKTVSIR--------------------G 66 (205)
T ss_pred EEEEeecccccCceeeehhhhcc---h----------hH-HHHHHHhCccceeeEEEec--------------------c
Confidence 56899999999999998655221 0 01 1123333443322222211 1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHHcCCc--eEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAERIK--PVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~~~ip--~iv~iNKiD~~~ 157 (755)
....+.++|..|..+|....--|-..+=+.+++.|-+....--.. +-.+||+..+.- .|++-+|-|...
T Consensus 67 t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 67 TDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFI 138 (205)
T ss_pred eEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhh
Confidence 245678899999998887766666666677888998875544443 345788877752 367899999864
No 458
>KOG0780|consensus
Probab=94.58 E-value=0.094 Score=56.08 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=41.3
Q ss_pred CCCeEEEEEcCCCCc----ccHHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCC--ce-EEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHV----DFSSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERI--KP-VLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~----df~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~i--p~-iv~iNKiD~~ 156 (755)
.+++.+.++||-|-- ....|+..... ..|-+|+|+||+-|- . ...|+..++- -+ -++++|+|-.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---a--ae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---A--AEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---h--HHHHHHHHHHhhccceEEEEecccC
Confidence 358899999999973 23344433332 358999999998874 2 2233444432 22 5679999964
No 459
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.42 E-value=0.072 Score=55.88 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcccHHH-HHHHhhhcCcEEEEEcCCC
Q psy16810 89 KGFLINLIDSPGHVDFSSE-VTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~-~~~al~~~D~ailVvda~~ 126 (755)
+.|.+.||||||+.....- ...++..+|.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 3688999999986421111 1123447999999998764
No 460
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.28 E-value=0.053 Score=54.31 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=28.5
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
||..+++.+-|||.|.++|||||++..|...-+
T Consensus 1 m~~~~~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 1 MMKKPEKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CCCCCCceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 666667789999999999999999999977655
No 461
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.20 E-value=0.11 Score=51.95 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~~ 157 (755)
..+.+.|||||.... ..+....++.+|++|+|+++...-..+.....+++.+.+.++ -+|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 367899999997322 223334556799999999998777777888888888899886 47899999753
No 462
>PRK01889 GTPase RsgA; Reviewed
Probab=94.11 E-value=0.058 Score=59.07 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..++++|.+|+|||||+++|+..... ..|.....+. +.+..|.......+
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~----~~G~i~~~~~----~g~~tt~~~~l~~l---------------------- 245 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQ----KTGAVREDDS----KGRHTTTHRELHPL---------------------- 245 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhccc----ceeeEEECCC----CCcchhhhccEEEe----------------------
Q ss_pred CCeEEEEEcCCCCccc
Q psy16810 89 KGFLINLIDSPGHVDF 104 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df 104 (755)
.....++||||..+|
T Consensus 246 -~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 246 -PSGGLLIDTPGMREL 260 (356)
T ss_pred -cCCCeecCCCchhhh
No 463
>KOG2484|consensus
Probab=94.09 E-value=0.064 Score=57.61 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
++...+||+|-+++||||++++|.....
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~ 277 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA 277 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc
Confidence 4457799999999999999999976544
No 464
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.93 E-value=0.057 Score=48.93 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.|+|.|.+||||||++..|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999976544
No 465
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=93.92 E-value=0.15 Score=52.73 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=51.6
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~ 156 (755)
++|.+.+||||+..+ ..+..++..+|.+|+|+++...-...+....+.+...+++. -+++|+.|..
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 368899999999665 56778899999999999987655555556666677778875 5899999863
No 466
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=93.83 E-value=0.13 Score=52.63 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHH------HcCCceEEEEeccc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI------AERIKPVLFMNKMD 154 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~------~~~ip~iv~iNKiD 154 (755)
++|.+.||||||+.+ ..+..++..+|.+|+.+.++.--...+...+.... ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468899999999875 56778999999999999876544444444443322 23678889999987
No 467
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=0.067 Score=65.95 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=29.6
Q ss_pred HhhhcCcEEEEEcCCCccee--hHH-HH----------HHHHHHcCCceEEEEeccchh
Q psy16810 111 ALRVTDGALVVVDCVSGVCV--QTE-TV----------LRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 111 al~~~D~ailVvda~~g~~~--qt~-~~----------~~~~~~~~ip~iv~iNKiD~~ 156 (755)
..+-.||+|+.+|..+=... +-. .+ ++......+|+.+++||+|+.
T Consensus 211 ~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 211 RRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred cCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 44567999999998763322 111 11 122233467999999999986
No 468
>KOG3887|consensus
Probab=93.81 E-value=0.062 Score=53.68 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=75.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|.++|+--+|||++.....+... +..|-++.+ ...+|-.--. ..
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMs------PneTlflES-----Tski~~d~is------------------------~s 73 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMS------PNETLFLES-----TSKITRDHIS------------------------NS 73 (347)
T ss_pred eEEEEeecccCcchhhheeeeccC------CCceeEeec-----cCcccHhhhh------------------------hh
Confidence 399999999999999877654321 122222221 1112211000 01
Q ss_pred CeEEEEEcCCCCcccHH---HHHHHhhhcCcEEEEEcCCCcce-ehHHHHHHHHHHcCC----ceEEEEeccchhhhccc
Q psy16810 90 GFLINLIDSPGHVDFSS---EVTAALRVTDGALVVVDCVSGVC-VQTETVLRQAIAERI----KPVLFMNKMDRALLELQ 161 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~---~~~~al~~~D~ailVvda~~g~~-~qt~~~~~~~~~~~i----p~iv~iNKiD~~~~~~~ 161 (755)
-..+.+||-||+.+|.. .-+.-.+.+.+.++||||.+..+ +-+..+...++.+.+ ..=|||-|.|-..-+++
T Consensus 74 finf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~k 153 (347)
T KOG3887|consen 74 FINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFK 153 (347)
T ss_pred hcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhh
Confidence 23567899999988754 34456788889999999988764 445555666666655 45689999998765554
Q ss_pred CC
Q psy16810 162 LD 163 (755)
Q Consensus 162 ~~ 163 (755)
++
T Consensus 154 ie 155 (347)
T KOG3887|consen 154 IE 155 (347)
T ss_pred hh
Confidence 43
No 469
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.77 E-value=0.32 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.|.|+|+++|||||+++.|....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 589999999999999999987644
No 470
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.56 E-value=0.11 Score=54.62 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCcccHHH-HHHHhhhcCcEEEEEcCCCcceehHHHHHH---HH-HHcCCceE-EEEec
Q psy16810 90 GFLINLIDSPGHVDFSSE-VTAALRVTDGALVVVDCVSGVCVQTETVLR---QA-IAERIKPV-LFMNK 152 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~-~~~al~~~D~ailVvda~~g~~~qt~~~~~---~~-~~~~ip~i-v~iNK 152 (755)
.|.+.||||||..-...- ...++..+|.+|+++.+..-.......+++ .+ ...+++.. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 688999999986421110 112345789999999876533333333322 22 23466664 44554
No 471
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.54 E-value=0.17 Score=52.04 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 91 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
..+.+||||--.- -.+.+++..+|.||+|.-.+.--..-.+++++.++.+|+|..+++||-+.-
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 4789999986433 579999999999999998776556677889999999999999999999653
No 472
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.1 Score=52.26 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=49.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCcc-cc---ccCcccccCCchhhhhh-ccccccceEEEEeeeCccccccccCCCcc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GA---KAGETRFTDTRKDEQER-CITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~-~~---~~g~~~~~d~~~~E~~r-giTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.-+|+|+.|||||||+..|....+.-. +. -.|. ..++-.++||.| ||++ -|++.
T Consensus 32 vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge-dI~~l~~~ERAr~GifL-------afQ~P------------- 90 (251)
T COG0396 32 VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE-DILELSPDERARAGIFL-------AFQYP------------- 90 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc-ccccCCHhHHHhcCCEE-------eecCC-------------
Confidence 458999999999999999976554322 11 1232 357778888887 6644 45411
Q ss_pred ccCCCCeEEEEEcCCCC--cccHHHHHHHhhhcCc
Q psy16810 85 AKNEKGFLINLIDSPGH--VDFSSEVTAALRVTDG 117 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh--~df~~~~~~al~~~D~ 117 (755)
...||- .+|.....++.+..+.
T Consensus 91 -----------~ei~GV~~~~fLr~a~n~~~~~~~ 114 (251)
T COG0396 91 -----------VEIPGVTNSDFLRAAMNARRGARG 114 (251)
T ss_pred -----------ccCCCeeHHHHHHHHHHhhhcccc
Confidence 255776 4677777777666665
No 473
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.47 E-value=0.19 Score=53.04 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCcccHH-HHHHHhhhcCcEEEEEcCCCcceehHHHH---HHHHHH-cCCceEEEEec
Q psy16810 90 GFLINLIDSPGHVDFSS-EVTAALRVTDGALVVVDCVSGVCVQTETV---LRQAIA-ERIKPVLFMNK 152 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~-~~~~al~~~D~ailVvda~~g~~~qt~~~---~~~~~~-~~ip~iv~iNK 152 (755)
+|.+.||||||..-... .+..++..+|.+|+++.+..--......+ ++.... .+.++..+++.
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n 183 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYN 183 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEe
Confidence 68899999998532111 12335667999999998865333333333 333322 35555434443
No 474
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.34 E-value=0.085 Score=53.12 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=22.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+...|+|.|++|||||||++.|....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999996643
No 475
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.32 E-value=0.26 Score=50.74 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-..+.|.|++|+|||+|+.++++.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367899999999999999998775
No 476
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.30 E-value=0.065 Score=43.58 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.|++.|.+|+||||++++|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999543
No 477
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.28 E-value=0.076 Score=51.61 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.+.+.++|+|..|+|||||+++|+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 45678999999999999999999753
No 478
>PRK08118 topology modulation protein; Reviewed
Probab=93.24 E-value=0.08 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.|.|+|++|||||||+..|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999976655
No 479
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=93.18 E-value=0.46 Score=42.27 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=51.1
Q ss_pred EEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccC-------ceeeecccc--C
Q psy16810 293 MYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGR-------YVEAIEDVP--S 363 (755)
Q Consensus 293 ~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~-------~~~~v~~a~--A 363 (755)
+.|..+..+++.|. ++-+=||+|+|+.||.|.+.+.+ |-- ..+|..++...+. .+.+++++. +
T Consensus 3 gtVlEvk~~~G~G~-t~dvIl~~GtL~~GD~Iv~g~~~---Gpi----~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~ 74 (110)
T cd03703 3 GTVLEVKEEEGLGT-TIDVILYDGTLREGDTIVVCGLN---GPI----VTKVRALLKPQPLKELRVKSRFIHVKEVKAAA 74 (110)
T ss_pred EEEEEEEEcCCCce-EEEEEEECCeEecCCEEEEccCC---CCc----eEEEeEecCCCCchhhccccccceeeEEecCC
Confidence 34555566788897 89999999999999999875431 210 1256666655552 345777777 6
Q ss_pred CCeEEeccccce
Q psy16810 364 GNICGLVGVDQF 375 (755)
Q Consensus 364 GdIvai~gl~~~ 375 (755)
|=-+...||++.
T Consensus 75 gvkI~~~gL~~v 86 (110)
T cd03703 75 GVKILAPDLEKA 86 (110)
T ss_pred CcEEEeCCCccc
Confidence 666666678774
No 480
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=93.18 E-value=0.19 Score=52.30 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=52.1
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCC-ceEEEEeccch
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI-KPVLFMNKMDR 155 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-p~iv~iNKiD~ 155 (755)
.+.+.+||||+..+ ..+..++..+|.+|+|+.+.......+..+++.+...+. +..+++|+++.
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 57899999999764 456678999999999999887766777777777777775 66789999985
No 481
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.14 E-value=0.18 Score=48.65 Aligned_cols=95 Identities=24% Similarity=0.352 Sum_probs=59.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCc-hhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTR-KDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~-~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+||.++|..|+||||+-.+|....+ ..+.|.+ ..|+.-|.||..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~---------~~F~D~D~~Ie~~~g~sI~e-------------------------- 47 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN---------LPFIDTDQEIEKRTGMSIAE-------------------------- 47 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC---------CCcccchHHHHHHHCcCHHH--------------------------
Confidence 6899999999999999988854332 2355554 347777777741
Q ss_pred CCCeEEEEEcCCCCccc---HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEE
Q psy16810 88 EKGFLINLIDSPGHVDF---SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFM 150 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df---~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~i 150 (755)
+++.=|-..| -.++...+...+.+|+ |+-|-....++.++.+...+ .+|++
T Consensus 48 -------IF~~~GE~~FR~~E~~vl~~l~~~~~~Vi---aTGGG~v~~~enr~~l~~~g--~vv~L 101 (172)
T COG0703 48 -------IFEEEGEEGFRRLETEVLKELLEEDNAVI---ATGGGAVLSEENRNLLKKRG--IVVYL 101 (172)
T ss_pred -------HHHHHhHHHHHHHHHHHHHHHhhcCCeEE---ECCCccccCHHHHHHHHhCC--eEEEE
Confidence 2344444444 3456666666664443 44555555666666667666 44444
No 482
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=93.14 E-value=0.17 Score=39.01 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=49.3
Q ss_pred EEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCc
Q psy16810 646 IQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQ 704 (755)
Q Consensus 646 I~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 704 (755)
|+||-...|.|-..|.+..+.|.+.+..+ .+.++..+|..+.-.|...|..+|+|+
T Consensus 1 i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~---~V~~~v~v~~~~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 1 ISCDYSQYGKVERLLEQNGIEIVDEDYTD---DVTLTVAVPEEEVEEFKAQLTDLTSGR 56 (56)
T ss_dssp EEE-CCCHHHHHHHHHHTTTEEEEEEECT---TEEEEEEEECCCHHHHHHHHHHHTTT-
T ss_pred CEechhhHHHHHHHHHHCCCEEEcceecc---eEEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999888643 389999999999999999999999996
No 483
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.99 E-value=0.097 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.|+|+|+.|+|||||++.|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 484
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.99 E-value=0.094 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEeCCCCChHHHHHHHHHhcC
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
|.++|++|+||||+++.|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999976555
No 485
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=92.95 E-value=0.29 Score=49.52 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=44.1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh---HHHHHHHH---HHcCCceEEEEeccch
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ---TETVLRQA---IAERIKPVLFMNKMDR 155 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q---t~~~~~~~---~~~~ip~iv~iNKiD~ 155 (755)
.++.+.||||+|...- .+..++..+|.+|+-+-.+.--..+ |..+++.. ....+|.-|++|++.-
T Consensus 82 ~~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred cCCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 3578999999997653 3666788899999877665433333 33332222 2345799999999984
No 486
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.93 E-value=0.19 Score=52.84 Aligned_cols=66 Identities=8% Similarity=-0.013 Sum_probs=38.6
Q ss_pred CCeEEEEEcCCCCcccH-HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHH---cCCceE-EEEeccc
Q psy16810 89 KGFLINLIDSPGHVDFS-SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA---ERIKPV-LFMNKMD 154 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~-~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~---~~ip~i-v~iNKiD 154 (755)
++|.+.+|||||..-.. .-...++..+|.+++|+....--......+++.+.. .++++. +++|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 46889999999864211 111123458999999997654322222334444433 356664 7789765
No 487
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.88 E-value=0.083 Score=53.41 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=17.6
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
-|+|+|+.|||||||++.|
T Consensus 33 ~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999987
No 488
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.79 E-value=0.39 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEeCCCCChHHHHHHHHHhc
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
++|.|++|+||||++..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999997654
No 489
>PRK07261 topology modulation protein; Provisional
Probab=92.75 E-value=0.1 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
.|+|+|.+|+|||||+..|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999985543
No 490
>PRK14530 adenylate kinase; Provisional
Probab=92.71 E-value=0.11 Score=52.56 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
++|+|+|.+||||||++..|....|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999766653
No 491
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.69 E-value=0.12 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
-++|+++|+.|+|||||...|....|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35899999999999999999976554
No 492
>PRK12289 GTPase RsgA; Reviewed
Probab=92.51 E-value=0.18 Score=55.01 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=36.2
Q ss_pred HhhhcCcEEEEEcCCCcc-ee-hHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 111 ALRVTDGALVVVDCVSGV-CV-QTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 111 al~~~D~ailVvda~~g~-~~-qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+++.+|.+++|+|+.+.. .. +..+.+..+...++|+++++||+|+.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 578999999999998543 23 33555566677899999999999985
No 493
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.49 E-value=0.12 Score=50.70 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
+...|+|+|.+||||||++..|....|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999866554
No 494
>KOG3859|consensus
Probab=92.47 E-value=0.32 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.-||..+|..|-|||||++.|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFN 64 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFN 64 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhc
Confidence 46999999999999999999965
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.31 E-value=0.13 Score=51.70 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=22.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
++-..|+|+|++|||||||+++|....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999999997543
No 496
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.25 E-value=0.11 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..++++|+.|+|||||++.++..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 56899999999999999988653
No 497
>PRK04195 replication factor C large subunit; Provisional
Probab=92.17 E-value=1.7 Score=49.79 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.+.+.|.|++|+||||++.+|....|
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999976543
No 498
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.14 E-value=0.14 Score=54.34 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=35.4
Q ss_pred hhhcCcEEEEEcCCCcc-eeh-HHHHHHHHHHcCCceEEEEeccchh
Q psy16810 112 LRVTDGALVVVDCVSGV-CVQ-TETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 112 l~~~D~ailVvda~~g~-~~q-t~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
++.+|.+++|+|+.+.. ... ..+.+..+...++|+++++||+|+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~ 122 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLL 122 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCC
Confidence 67889999999998875 322 2344555677899999999999985
No 499
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.10 E-value=0.12 Score=51.50 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~L 28 (755)
-.++|+|++|||||||+.+|
T Consensus 29 evv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 500
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.04 E-value=1 Score=42.75 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.-+|+|-|++|+|||||+..+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 457999999999999999988643
Done!