Query psy16810
Match_columns 755
No_of_seqs 325 out of 2574
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 22:41:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 2E-140 6E-145 1260.8 63.9 750 2-755 13-842 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 2E-122 5E-127 1091.8 51.6 646 6-740 11-709 (709)
3 3j25_A Tetracycline resistance 100.0 1E-118 4E-123 1044.8 13.1 603 7-725 1-620 (638)
4 2rdo_7 EF-G, elongation factor 100.0 1E-111 4E-116 993.7 60.3 635 4-734 6-701 (704)
5 2xex_A Elongation factor G; GT 100.0 3E-110 9E-115 982.3 54.0 626 5-734 7-689 (693)
6 1dar_A EF-G, elongation factor 100.0 6E-110 2E-114 978.8 46.6 619 4-721 8-683 (691)
7 2dy1_A Elongation factor G; tr 100.0 2E-102 6E-107 912.5 53.0 602 5-736 6-662 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 3.2E-79 1.1E-83 698.6 27.9 423 6-490 29-507 (548)
9 2ywe_A GTP-binding protein LEP 100.0 6.7E-77 2.3E-81 680.4 44.5 487 5-736 3-521 (600)
10 3cb4_D GTP-binding protein LEP 100.0 6.7E-75 2.3E-79 665.6 43.0 484 6-736 2-516 (599)
11 2h5e_A Peptide chain release f 100.0 2.8E-61 9.4E-66 548.4 34.4 416 6-483 11-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 1.8E-61 6.1E-66 549.3 30.1 416 6-483 11-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 6.1E-40 2.1E-44 342.4 21.0 199 368-725 2-211 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 1.5E-31 5.3E-36 298.6 25.7 288 5-387 14-328 (439)
15 2c78_A Elongation factor TU-A; 100.0 3.1E-31 1.1E-35 293.9 23.4 295 5-386 8-308 (405)
16 1d2e_A Elongation factor TU (E 100.0 4.8E-31 1.6E-35 291.4 20.5 281 7-386 2-290 (397)
17 1jny_A EF-1-alpha, elongation 100.0 1.2E-30 4E-35 291.7 18.4 286 6-386 4-317 (435)
18 1g7s_A Translation initiation 100.0 4.7E-30 1.6E-34 294.7 17.9 344 7-424 4-373 (594)
19 3mca_A HBS1, elongation factor 100.0 2.8E-30 9.7E-35 297.7 15.2 285 5-386 174-489 (592)
20 1f60_A Elongation factor EEF1A 100.0 3.1E-29 1.1E-33 281.5 19.0 288 2-386 1-328 (458)
21 1r5b_A Eukaryotic peptide chai 100.0 5.4E-30 1.8E-34 288.3 12.6 284 6-386 41-356 (467)
22 3avx_A Elongation factor TS, e 100.0 6E-29 2.1E-33 295.1 20.6 285 5-386 293-581 (1289)
23 2elf_A Protein translation elo 100.0 1.1E-28 3.8E-33 268.8 19.2 248 8-384 21-275 (370)
24 3p26_A Elongation factor 1 alp 100.0 1.4E-28 4.9E-33 278.4 20.5 295 6-387 31-363 (483)
25 1zun_B Sulfate adenylate trans 100.0 1.8E-28 6.1E-33 274.0 20.8 282 6-387 22-327 (434)
26 1kk1_A EIF2gamma; initiation o 100.0 6.6E-28 2.2E-32 267.7 22.7 269 6-370 8-294 (410)
27 3izq_1 HBS1P, elongation facto 99.9 5.2E-28 1.8E-32 279.5 15.8 296 6-387 165-497 (611)
28 1s0u_A EIF-2-gamma, translatio 99.9 2E-26 6.8E-31 255.5 20.7 270 6-370 6-292 (408)
29 1zo1_I IF2, translation initia 99.9 1.7E-28 5.7E-33 275.0 3.0 313 6-450 2-342 (501)
30 1wb1_A Translation elongation 99.9 3.9E-27 1.3E-31 265.7 13.9 259 7-382 18-280 (482)
31 3sjy_A Translation initiation 99.9 2.7E-25 9.4E-30 245.9 22.1 266 6-370 6-286 (403)
32 3izy_P Translation initiation 99.9 6E-27 2E-31 264.6 5.6 258 7-387 3-260 (537)
33 1wf3_A GTP-binding protein; GT 99.6 3.2E-15 1.1E-19 158.2 13.6 118 5-157 4-131 (301)
34 2xtp_A GTPase IMAP family memb 99.5 2.3E-14 7.7E-19 148.6 13.0 116 7-157 21-153 (260)
35 2lkc_A Translation initiation 99.5 7.3E-15 2.5E-19 142.3 7.1 117 5-157 5-121 (178)
36 1ega_A Protein (GTP-binding pr 99.5 1.3E-14 4.6E-19 153.6 9.2 115 7-157 7-130 (301)
37 3iev_A GTP-binding protein ERA 99.5 6.8E-14 2.3E-18 148.7 14.5 117 6-156 8-135 (308)
38 3qq5_A Small GTP-binding prote 99.5 1.1E-14 3.8E-19 160.4 6.9 116 6-157 32-154 (423)
39 2dyk_A GTP-binding protein; GT 99.5 1.4E-13 4.9E-18 130.7 12.6 115 8-157 1-122 (161)
40 3lxw_A GTPase IMAP family memb 99.5 3.4E-13 1.2E-17 138.6 15.9 116 7-157 20-153 (247)
41 1ky3_A GTP-binding protein YPT 99.5 2.1E-13 7.1E-18 132.2 11.0 125 1-158 1-133 (182)
42 2hjg_A GTP-binding protein ENG 99.5 7.5E-14 2.6E-18 155.7 8.7 116 7-157 174-300 (436)
43 4dhe_A Probable GTP-binding pr 99.4 2.8E-13 9.5E-18 136.5 10.7 118 6-157 27-158 (223)
44 3k53_A Ferrous iron transport 99.4 1.5E-13 5E-18 143.4 8.9 113 7-157 2-123 (271)
45 3tw8_B RAS-related protein RAB 99.4 1.3E-13 4.3E-18 133.7 7.5 123 1-157 2-127 (181)
46 2bme_A RAB4A, RAS-related prot 99.4 2.7E-13 9.1E-18 132.3 9.3 123 1-157 3-129 (186)
47 1wms_A RAB-9, RAB9, RAS-relate 99.4 7.6E-13 2.6E-17 127.8 11.9 121 2-156 1-129 (177)
48 2fh5_B SR-beta, signal recogni 99.4 1.8E-12 6.1E-17 129.8 14.8 119 2-157 1-129 (214)
49 3iby_A Ferrous iron transport 99.4 3.4E-13 1.2E-17 139.3 9.3 112 8-157 1-124 (256)
50 2efe_B Small GTP-binding prote 99.4 5.7E-13 1.9E-17 129.2 9.6 118 6-157 10-131 (181)
51 1mky_A Probable GTP-binding pr 99.4 9.1E-13 3.1E-17 147.1 12.5 113 9-156 2-123 (439)
52 2il1_A RAB12; G-protein, GDP, 99.4 1E-12 3.5E-17 129.3 11.4 117 7-157 25-145 (192)
53 3t1o_A Gliding protein MGLA; G 99.4 6.2E-13 2.1E-17 130.7 9.7 69 89-157 72-149 (198)
54 1vg8_A RAS-related protein RAB 99.4 2E-13 7E-18 135.7 6.2 122 1-156 1-130 (207)
55 2p5s_A RAS and EF-hand domain 99.4 1.2E-12 4E-17 129.7 11.0 118 6-157 26-147 (199)
56 3tkl_A RAS-related protein RAB 99.4 6.9E-13 2.4E-17 130.5 9.1 118 6-157 14-135 (196)
57 4dcu_A GTP-binding protein ENG 99.4 1E-12 3.4E-17 147.5 11.5 117 6-157 193-320 (456)
58 2fu5_C RAS-related protein RAB 99.4 3.6E-13 1.2E-17 131.1 6.8 121 3-157 3-127 (183)
59 2hxs_A RAB-26, RAS-related pro 99.4 1.8E-12 6.3E-17 125.2 11.6 120 5-157 3-129 (178)
60 3i8s_A Ferrous iron transport 99.4 1E-12 3.4E-17 137.3 10.2 112 8-157 3-126 (274)
61 1r8s_A ADP-ribosylation factor 99.4 3.8E-12 1.3E-16 121.2 13.2 109 10-157 2-115 (164)
62 2y8e_A RAB-protein 6, GH09086P 99.4 8.7E-13 3E-17 127.4 8.7 120 4-157 10-133 (179)
63 4dcu_A GTP-binding protein ENG 99.4 3.4E-13 1.2E-17 151.3 6.4 115 7-156 22-144 (456)
64 2fn4_A P23, RAS-related protei 99.4 1.1E-12 3.9E-17 126.9 9.2 122 1-157 2-128 (181)
65 3clv_A RAB5 protein, putative; 99.4 2.4E-12 8.2E-17 127.0 11.7 64 91-154 93-158 (208)
66 1jwy_B Dynamin A GTPase domain 99.4 1.1E-12 3.9E-17 139.7 9.8 68 90-157 130-212 (315)
67 1r2q_A RAS-related protein RAB 99.4 1.1E-12 3.9E-17 125.3 8.9 119 5-157 3-125 (170)
68 1z0f_A RAB14, member RAS oncog 99.4 1.8E-12 6.1E-17 125.2 10.2 118 6-157 13-134 (179)
69 1g16_A RAS-related protein SEC 99.4 1.8E-12 6.2E-17 124.1 10.1 116 7-156 2-121 (170)
70 2ew1_A RAS-related protein RAB 99.4 1.3E-12 4.4E-17 129.9 9.3 122 2-157 20-145 (201)
71 1upt_A ARL1, ADP-ribosylation 99.4 1.6E-12 5.6E-17 124.6 9.7 113 6-157 5-122 (171)
72 2hjg_A GTP-binding protein ENG 99.4 5.3E-13 1.8E-17 148.8 7.1 114 9-157 4-125 (436)
73 3bc1_A RAS-related protein RAB 99.4 2E-12 6.8E-17 126.6 10.4 126 5-157 8-141 (195)
74 3llu_A RAS-related GTP-binding 99.3 2.7E-12 9.3E-17 126.8 11.4 118 6-157 18-143 (196)
75 1svi_A GTP-binding protein YSX 99.3 6E-12 2.1E-16 123.7 13.6 115 6-157 21-148 (195)
76 2hup_A RAS-related protein RAB 99.3 3.9E-12 1.3E-16 126.3 12.3 118 6-157 27-148 (201)
77 4bas_A ADP-ribosylation factor 99.3 1.9E-12 6.5E-17 127.6 10.0 115 6-157 15-141 (199)
78 2g6b_A RAS-related protein RAB 99.3 1.8E-12 6.2E-17 125.5 9.6 119 6-157 8-130 (180)
79 1ek0_A Protein (GTP-binding pr 99.3 4.3E-12 1.5E-16 121.3 11.9 116 8-157 3-122 (170)
80 2gj8_A MNME, tRNA modification 99.3 5.9E-12 2E-16 121.7 12.8 114 9-157 5-129 (172)
81 1z2a_A RAS-related protein RAB 99.3 1.3E-12 4.6E-17 124.7 8.2 118 6-157 3-123 (168)
82 3pqc_A Probable GTP-binding pr 99.3 9.3E-12 3.2E-16 122.0 14.3 113 7-157 22-147 (195)
83 1m2o_B GTP-binding protein SAR 99.3 2E-12 7E-17 127.1 9.6 112 7-157 22-138 (190)
84 1zbd_A Rabphilin-3A; G protein 99.3 2.4E-12 8.2E-17 127.6 10.1 118 6-157 6-127 (203)
85 2bcg_Y Protein YP2, GTP-bindin 99.3 1.3E-12 4.3E-17 130.0 8.0 120 4-157 4-127 (206)
86 3a1s_A Iron(II) transport prot 99.3 2.2E-12 7.7E-17 133.3 10.1 114 6-157 3-124 (258)
87 2wji_A Ferrous iron transport 99.3 5.7E-12 2E-16 120.8 12.2 112 8-157 3-122 (165)
88 1zd9_A ADP-ribosylation factor 99.3 4.9E-12 1.7E-16 124.0 11.8 114 6-157 20-138 (188)
89 3kkq_A RAS-related protein M-R 99.3 4.3E-12 1.5E-16 123.4 11.1 116 6-157 16-137 (183)
90 2h57_A ADP-ribosylation factor 99.3 3.4E-12 1.2E-16 125.2 10.3 114 7-157 20-140 (190)
91 3lxx_A GTPase IMAP family memb 99.3 5.2E-12 1.8E-16 129.0 12.1 117 6-157 27-159 (239)
92 2a9k_A RAS-related protein RAL 99.3 7.1E-12 2.4E-16 121.9 12.4 119 4-157 14-137 (187)
93 1x3s_A RAS-related protein RAB 99.3 2.8E-12 9.7E-17 125.8 9.4 117 7-157 14-135 (195)
94 1zj6_A ADP-ribosylation factor 99.3 5.7E-12 1.9E-16 123.2 11.5 113 6-157 14-131 (187)
95 1u8z_A RAS-related protein RAL 99.3 8.4E-12 2.9E-16 118.8 12.4 116 7-157 3-123 (168)
96 1z06_A RAS-related protein RAB 99.3 1.6E-12 5.6E-17 127.4 7.5 118 6-157 18-141 (189)
97 2o52_A RAS-related protein RAB 99.3 1.9E-12 6.4E-17 128.4 8.0 118 6-157 23-144 (200)
98 1kao_A RAP2A; GTP-binding prot 99.3 5.9E-12 2E-16 119.8 11.2 114 8-157 3-122 (167)
99 1z08_A RAS-related protein RAB 99.3 2E-12 7E-17 123.8 7.8 119 5-157 3-125 (170)
100 3cph_A RAS-related protein SEC 99.3 2.3E-12 7.7E-17 128.7 8.3 116 7-156 19-138 (213)
101 2oil_A CATX-8, RAS-related pro 99.3 3E-12 1E-16 125.9 8.9 118 6-157 23-144 (193)
102 2fg5_A RAB-22B, RAS-related pr 99.3 3.8E-12 1.3E-16 125.2 9.6 118 6-157 21-142 (192)
103 2a5j_A RAS-related protein RAB 99.3 2.3E-12 7.9E-17 126.6 8.0 118 6-157 19-140 (191)
104 1f6b_A SAR1; gtpases, N-termin 99.3 7.9E-12 2.7E-16 123.7 11.9 120 7-168 24-148 (198)
105 3def_A T7I23.11 protein; chlor 99.3 4.8E-12 1.6E-16 131.2 10.7 115 7-156 35-164 (262)
106 1z0j_A RAB-22, RAS-related pro 99.3 3.5E-12 1.2E-16 122.0 8.7 118 6-157 4-125 (170)
107 2gf9_A RAS-related protein RAB 99.3 2E-12 7E-17 126.7 7.0 118 6-157 20-141 (189)
108 2wjg_A FEOB, ferrous iron tran 99.3 8.1E-12 2.8E-16 122.0 11.2 113 7-157 6-126 (188)
109 1ksh_A ARF-like protein 2; sma 99.3 4.4E-12 1.5E-16 123.8 9.3 113 6-157 16-133 (186)
110 2f7s_A C25KG, RAS-related prot 99.3 2.3E-12 7.7E-17 129.3 7.1 128 6-157 23-155 (217)
111 1fzq_A ADP-ribosylation factor 99.3 1.4E-11 4.9E-16 119.9 12.5 113 6-157 14-131 (181)
112 2qpt_A EH domain-containing pr 99.3 7.1E-12 2.4E-16 143.1 11.9 67 91-157 154-232 (550)
113 3dz8_A RAS-related protein RAB 99.3 1.5E-12 5.3E-17 127.8 5.5 119 5-157 20-142 (191)
114 3t5d_A Septin-7; GTP-binding p 99.3 2E-11 6.7E-16 127.5 14.3 123 7-156 7-157 (274)
115 2b6h_A ADP-ribosylation factor 99.3 8.2E-12 2.8E-16 122.9 10.8 113 6-157 27-144 (192)
116 1c1y_A RAS-related protein RAP 99.3 1.6E-11 5.6E-16 116.9 12.5 115 8-157 3-122 (167)
117 2bov_A RAla, RAS-related prote 99.3 1.6E-11 5.6E-16 121.6 12.5 117 6-157 12-133 (206)
118 2erx_A GTP-binding protein DI- 99.3 9E-12 3.1E-16 119.3 10.2 115 8-157 3-123 (172)
119 4dsu_A GTPase KRAS, isoform 2B 99.3 9.3E-12 3.2E-16 121.4 10.1 116 7-157 3-123 (189)
120 2h17_A ADP-ribosylation factor 99.3 6.5E-12 2.2E-16 122.2 8.9 112 7-157 20-136 (181)
121 3cpj_B GTP-binding protein YPT 99.3 4.3E-12 1.5E-16 128.0 7.9 118 6-157 11-132 (223)
122 1nrj_B SR-beta, signal recogni 99.3 2.4E-11 8.3E-16 121.8 13.4 112 6-157 10-134 (218)
123 3l0i_B RAS-related protein RAB 99.3 7.8E-13 2.7E-17 131.0 2.2 118 6-157 31-152 (199)
124 2gf0_A GTP-binding protein DI- 99.3 1.7E-11 5.9E-16 120.7 11.6 121 2-157 2-128 (199)
125 2ce2_X GTPase HRAS; signaling 99.3 2.5E-11 8.6E-16 115.2 12.3 113 9-157 4-122 (166)
126 4djt_A GTP-binding nuclear pro 99.3 2.4E-12 8.3E-17 129.2 5.2 122 3-157 6-131 (218)
127 2yc2_C IFT27, small RAB-relate 99.3 5.9E-12 2E-16 124.9 7.8 119 7-157 19-146 (208)
128 3gj0_A GTP-binding nuclear pro 99.3 2.2E-12 7.5E-17 129.9 4.6 118 6-157 13-133 (221)
129 2nzj_A GTP-binding protein REM 99.3 1E-11 3.5E-16 119.4 9.2 116 7-157 3-125 (175)
130 3t5g_A GTP-binding protein RHE 99.3 4.3E-12 1.5E-16 123.1 6.5 116 6-156 4-124 (181)
131 1moz_A ARL1, ADP-ribosylation 99.3 5.6E-12 1.9E-16 122.5 7.3 113 6-157 16-133 (183)
132 1mh1_A RAC1; GTP-binding, GTPa 99.3 5.1E-12 1.8E-16 122.9 7.0 115 7-157 4-123 (186)
133 3reg_A RHO-like small GTPase; 99.2 1.9E-11 6.6E-16 120.2 11.0 117 6-157 21-141 (194)
134 3r7w_A Gtpase1, GTP-binding pr 99.2 1.4E-11 4.9E-16 130.7 10.7 116 8-157 3-129 (307)
135 2x77_A ADP-ribosylation factor 99.2 4.1E-12 1.4E-16 124.4 6.0 113 6-157 20-137 (189)
136 2ged_A SR-beta, signal recogni 99.2 1.1E-11 3.8E-16 121.7 8.8 111 7-157 47-170 (193)
137 4gzl_A RAS-related C3 botulinu 99.2 5E-12 1.7E-16 125.8 6.2 117 6-157 28-148 (204)
138 3q85_A GTP-binding protein REM 99.2 2.1E-11 7.2E-16 116.6 10.2 116 8-157 2-123 (169)
139 2aka_B Dynamin-1; fusion prote 99.2 2.4E-11 8.3E-16 128.2 11.6 68 90-157 124-206 (299)
140 3con_A GTPase NRAS; structural 99.2 4.9E-11 1.7E-15 116.7 13.0 115 8-157 21-140 (190)
141 3geh_A MNME, tRNA modification 99.2 8.5E-12 2.9E-16 139.2 8.4 112 9-157 225-344 (462)
142 3bwd_D RAC-like GTP-binding pr 99.2 8.6E-12 3E-16 120.9 7.0 117 6-157 6-126 (182)
143 3gee_A MNME, tRNA modification 99.2 7E-12 2.4E-16 140.4 7.1 112 9-157 234-357 (476)
144 3b1v_A Ferrous iron uptake tra 99.2 1.6E-11 5.5E-16 127.7 9.4 111 8-157 3-121 (272)
145 3oes_A GTPase rhebl1; small GT 99.2 7.9E-12 2.7E-16 123.9 6.6 117 6-157 22-143 (201)
146 1h65_A Chloroplast outer envel 99.2 6.4E-11 2.2E-15 123.3 13.8 115 7-156 38-167 (270)
147 1mky_A Probable GTP-binding pr 99.2 3.5E-11 1.2E-15 134.2 12.4 116 7-157 179-306 (439)
148 2atx_A Small GTP binding prote 99.2 2.6E-11 9E-16 119.1 9.9 116 7-157 17-136 (194)
149 2qu8_A Putative nucleolar GTP- 99.2 5.2E-11 1.8E-15 120.5 12.0 115 7-157 28-156 (228)
150 3o47_A ADP-ribosylation factor 99.2 2.1E-11 7.2E-16 130.7 9.4 111 8-157 165-280 (329)
151 1xzp_A Probable tRNA modificat 99.2 2.5E-11 8.7E-16 136.0 10.1 112 9-157 244-364 (482)
152 1m7b_A RND3/RHOE small GTP-bin 99.2 3.6E-11 1.2E-15 117.2 10.0 117 5-157 4-125 (184)
153 3q72_A GTP-binding protein RAD 99.2 1.6E-11 5.3E-16 117.2 7.1 114 8-157 2-120 (166)
154 2gco_A H9, RHO-related GTP-bin 99.2 1.6E-11 5.4E-16 121.7 7.2 116 7-157 24-143 (201)
155 2j1l_A RHO-related GTP-binding 99.2 3E-11 1E-15 121.0 9.3 115 7-157 33-152 (214)
156 1gwn_A RHO-related GTP-binding 99.2 3.9E-11 1.3E-15 119.5 9.9 118 5-157 25-146 (205)
157 2j0v_A RAC-like GTP-binding pr 99.2 4.3E-11 1.5E-15 119.4 9.7 117 6-157 7-127 (212)
158 2fv8_A H6, RHO-related GTP-bin 99.2 2.3E-11 8E-16 121.1 7.8 116 7-157 24-143 (207)
159 2atv_A RERG, RAS-like estrogen 99.2 1.3E-10 4.4E-15 114.5 12.4 114 7-157 27-146 (196)
160 2q3h_A RAS homolog gene family 99.2 3.3E-11 1.1E-15 119.1 7.9 116 6-157 18-138 (201)
161 2cxx_A Probable GTP-binding pr 99.1 8.9E-11 3.1E-15 114.5 9.2 109 9-157 2-136 (190)
162 3ihw_A Centg3; RAS, centaurin, 99.1 1.8E-10 6.2E-15 112.5 10.8 110 6-156 18-132 (184)
163 3q3j_B RHO-related GTP-binding 99.1 2.3E-10 7.8E-15 114.7 11.9 116 7-157 26-145 (214)
164 3c5c_A RAS-like protein 12; GD 99.1 1.6E-10 5.4E-15 113.1 9.9 115 6-157 19-141 (187)
165 3th5_A RAS-related C3 botulinu 98.7 7E-12 2.4E-16 124.5 0.0 117 6-157 28-148 (204)
166 3cbq_A GTP-binding protein REM 99.1 2.4E-10 8.3E-15 112.7 10.9 118 6-157 21-144 (195)
167 3lvq_E ARF-GAP with SH3 domain 99.1 2.2E-10 7.4E-15 130.1 10.6 112 7-157 321-437 (497)
168 2iwr_A Centaurin gamma 1; ANK 99.1 7.7E-10 2.6E-14 106.8 12.9 109 6-156 5-121 (178)
169 2j69_A Bacterial dynamin-like 99.1 3.1E-10 1.1E-14 133.2 10.6 67 91-157 174-244 (695)
170 4dkx_A RAS-related protein RAB 99.0 1.3E-09 4.3E-14 109.5 12.9 126 7-167 12-141 (216)
171 2qtf_A Protein HFLX, GTP-bindi 99.0 1E-09 3.4E-14 118.9 13.0 115 7-157 178-306 (364)
172 1lnz_A SPO0B-associated GTP-bi 99.0 2.7E-10 9.2E-15 122.2 8.1 115 8-157 158-288 (342)
173 3t34_A Dynamin-related protein 99.0 6.8E-10 2.3E-14 120.5 11.4 68 90-157 135-217 (360)
174 2x2e_A Dynamin-1; nitration, h 99.0 6.4E-10 2.2E-14 120.4 10.2 68 90-157 129-211 (353)
175 2f9l_A RAB11B, member RAS onco 98.9 9.6E-10 3.3E-14 108.6 7.9 117 7-157 4-124 (199)
176 1pui_A ENGB, probable GTP-bind 98.9 2.9E-09 1E-13 105.7 11.3 113 7-156 25-150 (210)
177 2e87_A Hypothetical protein PH 98.9 2.4E-09 8.2E-14 116.0 11.4 116 6-157 165-294 (357)
178 2wkq_A NPH1-1, RAS-related C3 98.9 7.7E-10 2.6E-14 118.2 6.6 115 7-157 154-273 (332)
179 2zej_A Dardarin, leucine-rich 98.9 9.8E-10 3.3E-14 107.1 6.7 69 89-157 54-126 (184)
180 1wxq_A GTP-binding protein; st 98.9 1.4E-09 4.9E-14 119.0 8.0 38 90-127 70-114 (397)
181 2qag_A Septin-2, protein NEDD5 98.9 2.3E-09 8E-14 116.1 9.6 123 8-156 37-187 (361)
182 2p67_A LAO/AO transport system 98.9 7.6E-10 2.6E-14 119.1 4.5 62 89-157 147-208 (341)
183 3dpu_A RAB family protein; roc 98.9 1.9E-09 6.6E-14 123.3 7.9 124 6-157 39-164 (535)
184 3r7w_B Gtpase2, GTP-binding pr 98.9 4.4E-09 1.5E-13 110.9 9.4 111 10-157 1-120 (331)
185 2g3y_A GTP-binding protein GEM 98.8 7.9E-09 2.7E-13 103.2 10.3 119 6-157 35-159 (211)
186 3zvr_A Dynamin-1; hydrolase, D 98.8 9.8E-09 3.3E-13 119.7 12.4 68 90-157 149-231 (772)
187 4a9a_A Ribosome-interacting GT 98.8 6.3E-09 2.2E-13 112.3 9.6 115 8-159 72-198 (376)
188 1oix_A RAS-related protein RAB 98.8 5.4E-09 1.8E-13 102.6 7.3 117 7-157 28-148 (191)
189 2cjw_A GTP-binding protein GEM 98.8 1.5E-08 5.1E-13 99.5 10.3 118 7-157 5-128 (192)
190 2j37_W Signal recognition part 98.8 3E-09 1E-13 119.2 4.1 141 6-156 99-253 (504)
191 3p32_A Probable GTPase RV1496/ 98.7 1.9E-09 6.4E-14 116.7 2.2 62 89-157 170-231 (355)
192 2wsm_A Hydrogenase expression/ 98.7 4.7E-09 1.6E-13 105.3 4.5 133 7-157 29-168 (221)
193 2www_A Methylmalonic aciduria 98.6 2.3E-08 7.9E-13 107.7 5.5 62 89-157 165-226 (349)
194 1yrb_A ATP(GTP)binding protein 98.6 2.4E-08 8.1E-13 102.9 4.7 67 90-157 108-185 (262)
195 1udx_A The GTP-binding protein 98.5 1.8E-07 6E-12 102.7 9.6 114 9-157 158-283 (416)
196 1jal_A YCHF protein; nucleotid 98.5 1.6E-07 5.5E-12 100.8 8.3 113 9-156 3-122 (363)
197 3c5h_A Glucocorticoid receptor 98.5 5.8E-08 2E-12 99.9 4.1 43 114-156 162-211 (255)
198 3sop_A Neuronal-specific septi 98.3 2.1E-06 7.3E-11 88.8 12.1 122 9-156 3-153 (270)
199 3ec1_A YQEH GTPase; atnos1, at 98.3 9.8E-08 3.4E-12 103.6 0.7 111 9-157 163-288 (369)
200 2qag_C Septin-7; cell cycle, c 98.3 2.5E-06 8.7E-11 93.5 11.5 121 9-156 32-180 (418)
201 2qag_B Septin-6, protein NEDD5 98.3 2.9E-06 9.9E-11 92.7 11.3 130 8-174 42-201 (427)
202 2dby_A GTP-binding protein; GD 98.2 2.2E-06 7.6E-11 92.4 9.7 97 9-126 2-111 (368)
203 2v3c_C SRP54, signal recogniti 98.2 1.4E-06 4.8E-11 96.1 7.7 63 89-156 179-251 (432)
204 2ohf_A Protein OLA1, GTP-bindi 98.2 2.6E-06 9E-11 92.3 9.1 101 7-126 21-128 (396)
205 3h2y_A GTPase family protein; 98.2 3.4E-07 1.2E-11 99.2 2.0 116 9-157 161-287 (368)
206 2xxa_A Signal recognition part 98.2 2E-06 6.9E-11 94.9 7.7 63 89-156 182-253 (433)
207 2qnr_A Septin-2, protein NEDD5 98.2 6.3E-06 2.2E-10 86.7 10.7 122 9-156 19-168 (301)
208 2qm8_A GTPase/ATPase; G protei 98.1 2.2E-06 7.4E-11 91.8 5.8 61 89-156 146-206 (337)
209 1j8m_F SRP54, signal recogniti 98.1 4.5E-06 1.5E-10 87.5 7.1 65 89-156 179-252 (297)
210 3kl4_A SRP54, signal recogniti 98.0 4.8E-06 1.6E-10 91.5 6.6 66 89-156 178-251 (433)
211 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 1.7E-05 5.9E-10 86.1 10.8 101 6-126 18-127 (392)
212 3dm5_A SRP54, signal recogniti 98.0 4.3E-05 1.5E-09 83.9 12.9 65 90-156 182-252 (443)
213 2hf9_A Probable hydrogenase ni 97.8 1.3E-05 4.6E-10 80.1 5.2 60 90-157 118-178 (226)
214 3e1y_E Eukaryotic peptide chai 97.8 2.8E-05 9.7E-10 76.7 7.3 84 287-386 3-89 (204)
215 1f5n_A Interferon-induced guan 97.7 3.1E-05 1.1E-09 88.2 7.0 108 6-143 36-149 (592)
216 4dzz_A Plasmid partitioning pr 97.6 0.00014 4.9E-09 71.2 8.5 64 90-156 75-143 (206)
217 1tq4_A IIGP1, interferon-induc 97.5 0.00035 1.2E-08 76.3 11.1 116 9-158 70-190 (413)
218 3szr_A Interferon-induced GTP- 97.5 0.00024 8.2E-09 82.0 9.5 67 91-157 147-228 (608)
219 1cip_A Protein (guanine nucleo 97.4 7.4E-05 2.5E-09 80.1 4.7 69 89-157 191-274 (353)
220 1zu4_A FTSY; GTPase, signal re 97.4 0.00016 5.6E-09 76.4 6.0 63 89-156 190-267 (320)
221 4fid_A G protein alpha subunit 97.3 0.00021 7.2E-09 75.9 6.2 69 89-157 159-242 (340)
222 1zcb_A G alpha I/13; GTP-bindi 97.3 0.00013 4.4E-09 78.6 4.5 69 89-157 199-282 (362)
223 3cwq_A Para family chromosome 97.2 0.00063 2.1E-08 67.3 8.3 65 90-156 67-133 (209)
224 1puj_A YLQF, conserved hypothe 97.1 0.00032 1.1E-08 72.8 5.3 25 7-31 119-143 (282)
225 1azs_C GS-alpha; complex (lyas 97.1 0.00034 1.2E-08 75.9 5.7 69 89-157 215-298 (402)
226 3e70_C DPA, signal recognition 97.1 0.00074 2.5E-08 71.6 8.1 62 90-156 211-281 (328)
227 2ffh_A Protein (FFH); SRP54, s 97.1 0.001 3.6E-08 72.7 9.4 63 89-156 179-250 (425)
228 2yhs_A FTSY, cell division pro 97.1 0.00096 3.3E-08 73.9 9.0 24 8-31 293-316 (503)
229 1vma_A Cell division protein F 97.1 0.00067 2.3E-08 71.2 6.8 25 7-31 103-127 (306)
230 1rj9_A FTSY, signal recognitio 97.0 0.0012 4.3E-08 69.1 8.8 25 7-31 101-125 (304)
231 3ohm_A Guanine nucleotide-bind 97.0 0.00092 3.1E-08 70.6 7.0 69 89-157 165-248 (327)
232 2px0_A Flagellar biosynthesis 97.0 0.00062 2.1E-08 71.1 5.4 63 90-156 182-252 (296)
233 3q5d_A Atlastin-1; G protein, 96.9 0.0025 8.7E-08 70.0 10.3 26 6-31 65-90 (447)
234 3end_A Light-independent proto 96.8 0.0013 4.5E-08 69.0 6.7 66 89-155 155-225 (307)
235 1vi7_A Hypothetical protein YI 96.8 0.0027 9.3E-08 62.1 8.0 112 591-708 92-203 (217)
236 3kjh_A CO dehydrogenase/acetyl 96.7 0.0027 9.3E-08 63.9 7.7 65 89-155 130-195 (254)
237 3cnl_A YLQF, putative uncharac 96.7 0.00067 2.3E-08 69.6 3.1 22 9-30 100-121 (262)
238 2cve_A Hypothetical protein TT 96.7 0.0041 1.4E-07 59.6 8.1 111 591-707 80-190 (191)
239 1ls1_A Signal recognition part 96.6 0.0023 7.9E-08 66.8 6.8 62 90-156 180-250 (295)
240 2xtz_A Guanine nucleotide-bind 96.6 0.00089 3.1E-08 71.7 3.4 69 89-157 181-264 (354)
241 1puj_A YLQF, conserved hypothe 96.3 0.0027 9.3E-08 65.8 4.9 59 97-157 5-64 (282)
242 1u0l_A Probable GTPase ENGC; p 96.1 0.0019 6.4E-08 67.7 2.4 64 92-157 64-129 (301)
243 3b9q_A Chloroplast SRP recepto 95.9 0.023 8E-07 59.3 9.5 64 91-156 184-259 (302)
244 2ph1_A Nucleotide-binding prot 95.8 0.015 5.2E-07 59.2 7.6 67 89-155 127-194 (262)
245 3cnl_A YLQF, putative uncharac 95.5 0.0033 1.1E-07 64.4 1.2 55 99-157 5-60 (262)
246 2og2_A Putative signal recogni 95.4 0.052 1.8E-06 57.9 10.0 64 91-156 241-316 (359)
247 3lh2_S 4E10_1VI7A_S0_002_N (T8 94.7 0.031 1.1E-06 45.3 4.5 63 642-707 8-70 (76)
248 2yv5_A YJEQ protein; hydrolase 94.5 0.012 4.1E-07 61.6 2.0 55 102-156 67-123 (302)
249 1hyq_A MIND, cell division inh 94.5 0.046 1.6E-06 55.4 6.4 65 90-156 110-175 (263)
250 1knq_A Gluconate kinase; ALFA/ 94.2 0.032 1.1E-06 52.7 4.2 29 6-34 6-34 (175)
251 1g3q_A MIND ATPase, cell divis 93.8 0.069 2.4E-06 53.0 5.9 66 89-156 110-176 (237)
252 3bfv_A CAPA1, CAPB2, membrane 93.7 0.073 2.5E-06 54.5 6.0 66 90-156 191-257 (271)
253 3l82_B F-box only protein 4; T 93.6 0.085 2.9E-06 51.5 5.7 77 92-171 97-188 (227)
254 1t9h_A YLOQ, probable GTPase E 93.5 0.034 1.2E-06 58.1 3.2 22 9-30 174-195 (307)
255 4ido_A Atlastin-1; GTPase, GTP 93.5 0.26 8.9E-06 53.9 10.2 27 5-31 64-90 (457)
256 1wcv_1 SOJ, segregation protei 93.4 0.12 3.9E-06 52.4 6.9 66 89-156 110-182 (257)
257 2yvu_A Probable adenylyl-sulfa 93.3 0.39 1.3E-05 45.6 10.3 25 7-31 12-36 (186)
258 4eun_A Thermoresistant glucoki 93.3 0.047 1.6E-06 53.0 3.6 29 7-35 28-56 (200)
259 1bif_A 6-phosphofructo-2-kinas 93.3 0.047 1.6E-06 60.8 4.0 25 8-32 39-63 (469)
260 1ye8_A Protein THEP1, hypothet 93.3 0.046 1.6E-06 52.3 3.4 25 9-33 1-25 (178)
261 1kgd_A CASK, peripheral plasma 93.2 0.046 1.6E-06 52.1 3.4 23 9-31 6-28 (180)
262 1zp6_A Hypothetical protein AT 93.2 0.053 1.8E-06 51.9 3.8 25 6-30 7-31 (191)
263 1lvg_A Guanylate kinase, GMP k 93.1 0.043 1.5E-06 53.3 3.0 24 8-31 4-27 (198)
264 2yv5_A YJEQ protein; hydrolase 93.1 0.12 4.2E-06 53.7 6.7 21 9-29 166-186 (302)
265 3a00_A Guanylate kinase, GMP k 93.1 0.043 1.5E-06 52.7 2.9 23 9-31 2-24 (186)
266 1xe1_A Hypothetical protein PF 93.1 0.26 9E-06 42.8 7.5 65 289-370 33-97 (116)
267 1cke_A CK, MSSA, protein (cyti 93.1 0.06 2.1E-06 53.1 4.1 30 1-33 1-30 (227)
268 3q9l_A Septum site-determining 92.9 0.099 3.4E-06 52.7 5.5 65 90-156 113-186 (260)
269 2oze_A ORF delta'; para, walke 92.7 0.12 4.1E-06 53.4 5.9 65 90-156 154-225 (298)
270 3kb2_A SPBC2 prophage-derived 92.7 0.064 2.2E-06 50.2 3.4 25 9-33 2-26 (173)
271 3k9g_A PF-32 protein; ssgcid, 92.6 0.15 5E-06 51.8 6.3 66 89-156 143-210 (267)
272 1uf9_A TT1252 protein; P-loop, 92.6 0.087 3E-06 50.8 4.3 26 6-31 6-31 (203)
273 3cio_A ETK, tyrosine-protein k 92.6 0.17 5.8E-06 52.5 6.8 66 90-156 213-279 (299)
274 1kag_A SKI, shikimate kinase I 92.5 0.067 2.3E-06 50.3 3.3 25 9-33 5-29 (173)
275 3tau_A Guanylate kinase, GMP k 92.5 0.072 2.5E-06 52.1 3.7 26 7-32 7-32 (208)
276 1xjc_A MOBB protein homolog; s 92.4 0.076 2.6E-06 50.2 3.5 25 7-31 3-27 (169)
277 3asz_A Uridine kinase; cytidin 92.3 0.082 2.8E-06 51.6 3.8 26 6-31 4-29 (211)
278 3tr0_A Guanylate kinase, GMP k 92.3 0.073 2.5E-06 51.5 3.4 24 9-32 8-31 (205)
279 3lw7_A Adenylate kinase relate 92.3 0.082 2.8E-06 49.4 3.6 24 9-33 2-25 (179)
280 3c8u_A Fructokinase; YP_612366 92.2 0.087 3E-06 51.4 3.9 25 7-31 21-45 (208)
281 1znw_A Guanylate kinase, GMP k 92.0 0.077 2.6E-06 51.8 3.1 24 9-32 21-44 (207)
282 1qhx_A CPT, protein (chloramph 91.9 0.11 3.7E-06 49.0 4.0 25 9-33 4-28 (178)
283 1t9h_A YLOQ, probable GTPase E 91.9 0.12 4E-06 54.0 4.5 47 111-157 83-131 (307)
284 1zd8_A GTP:AMP phosphotransfer 91.7 0.11 3.6E-06 51.5 3.9 29 5-33 4-32 (227)
285 2cvh_A DNA repair and recombin 91.7 0.37 1.3E-05 46.9 7.9 22 9-30 21-42 (220)
286 3ea0_A ATPase, para family; al 91.7 0.15 5.2E-06 50.7 5.1 65 90-156 118-185 (245)
287 3ney_A 55 kDa erythrocyte memb 91.7 0.1 3.4E-06 50.7 3.5 26 7-32 18-43 (197)
288 1htw_A HI0065; nucleotide-bind 91.6 0.094 3.2E-06 49.0 3.1 24 9-32 34-57 (158)
289 3la6_A Tyrosine-protein kinase 91.5 0.26 8.8E-06 50.8 6.7 66 90-156 201-267 (286)
290 3t61_A Gluconokinase; PSI-biol 91.5 0.1 3.4E-06 50.6 3.3 27 8-34 18-44 (202)
291 3vaa_A Shikimate kinase, SK; s 91.5 0.11 3.9E-06 50.1 3.7 27 7-33 24-50 (199)
292 1z6g_A Guanylate kinase; struc 91.5 0.095 3.2E-06 51.7 3.1 24 9-32 24-47 (218)
293 1s96_A Guanylate kinase, GMP k 91.4 0.1 3.6E-06 51.5 3.4 25 8-32 16-40 (219)
294 3trf_A Shikimate kinase, SK; a 91.4 0.11 3.9E-06 49.3 3.6 26 8-33 5-30 (185)
295 3ec1_A YQEH GTPase; atnos1, at 91.4 0.088 3E-06 56.5 3.1 63 92-157 50-112 (369)
296 4gp7_A Metallophosphoesterase; 91.4 0.091 3.1E-06 49.6 2.9 20 9-28 10-29 (171)
297 1ex7_A Guanylate kinase; subst 91.3 0.1 3.5E-06 50.2 3.1 24 9-32 2-25 (186)
298 2j41_A Guanylate kinase; GMP, 91.3 0.11 3.8E-06 50.2 3.4 24 8-31 6-29 (207)
299 3zvl_A Bifunctional polynucleo 91.2 0.35 1.2E-05 52.7 7.7 25 7-31 257-281 (416)
300 1np6_A Molybdopterin-guanine d 91.2 0.13 4.3E-06 48.9 3.6 25 7-31 5-29 (174)
301 3l2o_B F-box only protein 4; s 91.2 0.28 9.5E-06 50.3 6.2 70 99-171 195-273 (312)
302 2bdt_A BH3686; alpha-beta prot 91.2 0.13 4.5E-06 49.1 3.8 22 9-30 3-24 (189)
303 2bbw_A Adenylate kinase 4, AK4 90.9 0.14 4.7E-06 51.4 3.8 28 8-35 27-54 (246)
304 1ukz_A Uridylate kinase; trans 90.9 0.17 5.9E-06 48.8 4.4 29 6-34 13-41 (203)
305 1qf9_A UMP/CMP kinase, protein 90.8 0.19 6.5E-06 47.8 4.6 26 8-33 6-31 (194)
306 1ly1_A Polynucleotide kinase; 90.8 0.12 4.3E-06 48.5 3.2 22 9-30 3-24 (181)
307 1jjv_A Dephospho-COA kinase; P 90.8 0.13 4.3E-06 50.0 3.2 22 9-30 3-24 (206)
308 2qor_A Guanylate kinase; phosp 90.7 0.12 4.3E-06 50.1 3.2 26 7-32 11-36 (204)
309 2qt1_A Nicotinamide riboside k 90.7 0.18 6.1E-06 49.0 4.3 26 6-31 19-44 (207)
310 2f1r_A Molybdopterin-guanine d 90.7 0.079 2.7E-06 50.2 1.6 23 9-31 3-25 (171)
311 2if2_A Dephospho-COA kinase; a 90.5 0.14 4.6E-06 49.7 3.2 24 9-33 2-25 (204)
312 3ec2_A DNA replication protein 90.5 0.12 4.3E-06 48.9 2.9 24 8-31 38-61 (180)
313 2jeo_A Uridine-cytidine kinase 90.4 0.15 5E-06 51.2 3.5 26 9-34 26-51 (245)
314 3tif_A Uncharacterized ABC tra 90.4 0.12 4.2E-06 51.6 2.8 20 9-28 32-51 (235)
315 2pcj_A ABC transporter, lipopr 90.4 0.13 4.5E-06 50.9 3.0 19 10-28 32-50 (224)
316 2jaq_A Deoxyguanosine kinase; 90.3 0.16 5.4E-06 48.9 3.5 25 10-34 2-26 (205)
317 3iij_A Coilin-interacting nucl 90.3 0.18 6.1E-06 47.7 3.8 27 7-33 10-36 (180)
318 1via_A Shikimate kinase; struc 90.3 0.15 5.2E-06 48.0 3.3 25 9-33 5-29 (175)
319 2wwf_A Thymidilate kinase, put 90.2 0.18 6.1E-06 49.0 3.8 25 7-31 9-33 (212)
320 1nks_A Adenylate kinase; therm 90.2 0.16 5.5E-06 48.3 3.4 24 9-32 2-25 (194)
321 2plr_A DTMP kinase, probable t 90.2 0.19 6.5E-06 48.6 4.0 25 9-33 5-29 (213)
322 3cm0_A Adenylate kinase; ATP-b 90.1 0.18 6.3E-06 47.8 3.7 26 8-33 4-29 (186)
323 3dl0_A Adenylate kinase; phosp 90.1 0.19 6.3E-06 49.2 3.8 25 10-34 2-26 (216)
324 3fb4_A Adenylate kinase; psych 90.0 0.17 6E-06 49.3 3.6 25 10-34 2-26 (216)
325 3b85_A Phosphate starvation-in 89.9 0.16 5.4E-06 49.8 3.0 22 10-31 24-45 (208)
326 2c95_A Adenylate kinase 1; tra 89.8 0.22 7.4E-06 47.6 4.0 27 7-33 8-34 (196)
327 1tev_A UMP-CMP kinase; ploop, 89.8 0.2 6.9E-06 47.7 3.7 25 9-33 4-28 (196)
328 3aez_A Pantothenate kinase; tr 89.8 0.21 7.2E-06 52.2 4.1 26 6-31 88-113 (312)
329 2eyu_A Twitching motility prot 89.8 0.18 6.2E-06 51.2 3.5 23 9-31 26-48 (261)
330 2rhm_A Putative kinase; P-loop 89.7 0.23 7.7E-06 47.4 4.0 26 8-33 5-30 (193)
331 2onk_A Molybdate/tungstate ABC 89.7 0.18 6.3E-06 50.5 3.4 21 9-29 25-45 (240)
332 1zuh_A Shikimate kinase; alpha 89.7 0.2 6.8E-06 46.8 3.5 27 7-33 6-32 (168)
333 1y63_A LMAJ004144AAA protein; 89.7 0.23 8E-06 47.3 4.0 25 7-31 9-33 (184)
334 3umf_A Adenylate kinase; rossm 89.6 0.27 9.1E-06 48.5 4.5 30 6-35 27-56 (217)
335 3uie_A Adenylyl-sulfate kinase 89.6 0.18 6.1E-06 48.8 3.2 25 7-31 24-48 (200)
336 3tqc_A Pantothenate kinase; bi 89.5 0.2 6.9E-06 52.5 3.7 27 6-32 90-116 (321)
337 2i3b_A HCR-ntpase, human cance 89.4 0.19 6.5E-06 48.4 3.2 22 10-31 3-24 (189)
338 2kjq_A DNAA-related protein; s 89.4 0.18 6.2E-06 46.5 2.9 24 8-31 36-59 (149)
339 2v9p_A Replication protein E1; 89.3 0.19 6.6E-06 52.2 3.3 23 9-31 127-149 (305)
340 3lnc_A Guanylate kinase, GMP k 89.3 0.13 4.6E-06 50.9 2.1 21 9-29 28-48 (231)
341 1kht_A Adenylate kinase; phosp 89.3 0.19 6.5E-06 47.7 3.1 25 9-33 4-28 (192)
342 4g1u_C Hemin import ATP-bindin 89.2 0.17 5.8E-06 51.6 2.9 20 10-29 39-58 (266)
343 2cbz_A Multidrug resistance-as 89.2 0.17 5.9E-06 50.6 2.8 19 10-28 33-51 (237)
344 1aky_A Adenylate kinase; ATP:A 89.2 0.23 7.8E-06 48.7 3.7 27 7-33 3-29 (220)
345 2pze_A Cystic fibrosis transme 89.2 0.19 6.3E-06 50.1 3.0 19 10-28 36-54 (229)
346 1b0u_A Histidine permease; ABC 89.1 0.17 5.9E-06 51.4 2.8 19 10-28 34-52 (262)
347 2d2e_A SUFC protein; ABC-ATPas 89.1 0.2 6.8E-06 50.6 3.2 21 10-30 31-51 (250)
348 3gfo_A Cobalt import ATP-bindi 89.1 0.17 5.9E-06 51.8 2.8 19 10-28 36-54 (275)
349 1sgw_A Putative ABC transporte 89.1 0.18 6.2E-06 49.6 2.8 19 10-28 37-55 (214)
350 2bwj_A Adenylate kinase 5; pho 89.1 0.24 8E-06 47.5 3.6 26 8-33 12-37 (199)
351 1g6h_A High-affinity branched- 89.0 0.19 6.5E-06 50.9 3.0 20 9-28 34-53 (257)
352 1odf_A YGR205W, hypothetical 3 89.0 0.26 9E-06 50.9 4.1 26 6-31 29-54 (290)
353 1mv5_A LMRA, multidrug resista 89.0 0.19 6.7E-06 50.4 3.0 21 9-29 29-49 (243)
354 1ji0_A ABC transporter; ATP bi 89.0 0.18 6.3E-06 50.5 2.8 19 10-28 34-52 (240)
355 1nij_A Hypothetical protein YJ 89.0 0.22 7.7E-06 52.1 3.6 25 7-31 3-27 (318)
356 4e22_A Cytidylate kinase; P-lo 88.9 0.24 8.4E-06 49.9 3.7 27 8-34 27-53 (252)
357 2cdn_A Adenylate kinase; phosp 88.9 0.29 9.8E-06 47.2 4.1 27 7-33 19-45 (201)
358 3kta_A Chromosome segregation 88.8 0.25 8.6E-06 46.7 3.6 24 10-33 28-51 (182)
359 2ehv_A Hypothetical protein PH 88.8 0.21 7.3E-06 49.7 3.2 21 9-29 31-51 (251)
360 2iyv_A Shikimate kinase, SK; t 88.8 0.22 7.4E-06 47.3 3.1 25 9-33 3-27 (184)
361 2ff7_A Alpha-hemolysin translo 88.8 0.21 7.1E-06 50.4 3.0 19 10-28 37-55 (247)
362 1uj2_A Uridine-cytidine kinase 88.7 0.27 9.2E-06 49.5 3.9 28 7-34 21-48 (252)
363 2vhj_A Ntpase P4, P4; non- hyd 88.7 0.38 1.3E-05 50.2 5.0 23 9-31 124-146 (331)
364 2ze6_A Isopentenyl transferase 88.7 0.26 9.1E-06 49.7 3.8 25 9-33 2-26 (253)
365 3h2y_A GTPase family protein; 88.7 0.15 5.2E-06 54.6 2.1 60 95-157 51-110 (368)
366 1rz3_A Hypothetical protein rb 88.7 0.3 1E-05 47.2 4.1 24 7-30 21-44 (201)
367 2ghi_A Transport protein; mult 88.5 0.22 7.4E-06 50.6 3.0 21 9-29 47-67 (260)
368 2olj_A Amino acid ABC transpor 88.5 0.22 7.4E-06 50.7 3.0 20 9-28 51-70 (263)
369 4a74_A DNA repair and recombin 88.5 0.24 8.2E-06 48.6 3.3 22 9-30 26-47 (231)
370 1e6c_A Shikimate kinase; phosp 88.5 0.24 8.2E-06 46.3 3.2 25 9-33 3-27 (173)
371 3hr8_A Protein RECA; alpha and 88.5 0.7 2.4E-05 49.1 7.0 23 9-31 62-84 (356)
372 3tlx_A Adenylate kinase 2; str 88.4 0.3 1E-05 48.9 4.1 28 7-34 28-55 (243)
373 2wbm_A MTHSBDS, ribosome matur 88.4 0.81 2.8E-05 45.5 6.9 68 640-709 183-250 (252)
374 4fcw_A Chaperone protein CLPB; 88.3 1.1 3.7E-05 46.2 8.4 23 9-31 48-70 (311)
375 2qi9_C Vitamin B12 import ATP- 88.3 0.21 7.3E-06 50.3 2.8 19 10-28 28-46 (249)
376 1vpl_A ABC transporter, ATP-bi 88.3 0.23 7.8E-06 50.3 3.0 20 9-28 42-61 (256)
377 2rcn_A Probable GTPase ENGC; Y 88.3 0.23 8E-06 52.8 3.2 22 9-30 216-237 (358)
378 2zu0_C Probable ATP-dependent 88.3 0.22 7.6E-06 50.7 3.0 21 10-30 48-68 (267)
379 2pt5_A Shikimate kinase, SK; a 88.3 0.28 9.5E-06 45.6 3.4 24 10-33 2-25 (168)
380 1zak_A Adenylate kinase; ATP:A 88.2 0.28 9.5E-06 48.2 3.5 27 7-33 4-30 (222)
381 1u94_A RECA protein, recombina 88.2 0.81 2.8E-05 48.6 7.4 24 8-31 63-86 (356)
382 1sq5_A Pantothenate kinase; P- 88.2 0.32 1.1E-05 50.6 4.2 25 7-31 79-103 (308)
383 1e4v_A Adenylate kinase; trans 88.1 0.3 1E-05 47.6 3.8 24 10-33 2-25 (214)
384 3fkq_A NTRC-like two-domain pr 88.1 0.46 1.6E-05 50.9 5.5 36 89-126 258-293 (373)
385 2vli_A Antibiotic resistance p 88.1 0.25 8.4E-06 46.7 2.9 26 8-33 5-30 (183)
386 3sr0_A Adenylate kinase; phosp 88.0 0.29 9.8E-06 47.9 3.4 26 10-35 2-27 (206)
387 2gza_A Type IV secretion syste 88.0 0.24 8E-06 53.0 3.0 22 9-30 176-197 (361)
388 2yz2_A Putative ABC transporte 88.0 0.25 8.4E-06 50.4 3.0 19 10-28 35-53 (266)
389 1nn5_A Similar to deoxythymidy 88.0 0.29 1E-05 47.5 3.5 24 8-31 9-32 (215)
390 2v54_A DTMP kinase, thymidylat 88.0 0.25 8.7E-06 47.5 3.0 25 8-32 4-28 (204)
391 3iqw_A Tail-anchored protein t 87.9 1.5 5.2E-05 46.0 9.3 40 116-155 223-263 (334)
392 2xj4_A MIPZ; replication, cell 87.9 0.13 4.4E-06 53.0 0.9 65 90-156 103-191 (286)
393 2ixe_A Antigen peptide transpo 87.8 0.25 8.7E-06 50.5 3.0 19 10-28 47-65 (271)
394 2nq2_C Hypothetical ABC transp 87.8 0.24 8.1E-06 50.1 2.7 19 10-28 33-51 (253)
395 2ihy_A ABC transporter, ATP-bi 87.7 0.26 8.8E-06 50.7 3.0 19 10-28 49-67 (279)
396 2pbr_A DTMP kinase, thymidylat 87.7 0.28 9.5E-06 46.7 3.1 22 10-31 2-23 (195)
397 3jvv_A Twitching mobility prot 87.7 0.29 1E-05 52.1 3.5 23 9-31 124-146 (356)
398 1f2t_A RAD50 ABC-ATPase; DNA d 87.6 0.3 1E-05 44.9 3.1 23 10-32 25-47 (149)
399 2grj_A Dephospho-COA kinase; T 87.6 0.38 1.3E-05 46.3 4.0 27 7-33 11-37 (192)
400 1gtv_A TMK, thymidylate kinase 87.4 0.17 5.9E-06 49.1 1.4 22 10-31 2-23 (214)
401 2pt7_A CAG-ALFA; ATPase, prote 87.4 0.22 7.7E-06 52.4 2.4 22 9-30 172-193 (330)
402 1ak2_A Adenylate kinase isoenz 87.3 0.37 1.3E-05 47.8 3.8 27 7-33 15-41 (233)
403 1ihu_A Arsenical pump-driving 87.2 0.46 1.6E-05 54.3 5.0 131 1-154 1-238 (589)
404 1byi_A Dethiobiotin synthase; 87.2 0.87 3E-05 44.5 6.5 67 90-156 108-180 (224)
405 3r20_A Cytidylate kinase; stru 87.1 0.36 1.2E-05 48.1 3.6 26 8-33 9-34 (233)
406 2x8a_A Nuclear valosin-contain 87.1 0.35 1.2E-05 49.4 3.6 25 9-33 45-69 (274)
407 2zr9_A Protein RECA, recombina 87.0 0.89 3.1E-05 48.2 6.8 23 9-31 62-84 (349)
408 3nwj_A ATSK2; P loop, shikimat 86.9 0.33 1.1E-05 49.0 3.2 25 9-33 49-73 (250)
409 2ewv_A Twitching motility prot 86.8 0.34 1.1E-05 52.0 3.4 24 8-31 136-159 (372)
410 2pez_A Bifunctional 3'-phospho 86.8 0.35 1.2E-05 45.6 3.2 24 8-31 5-28 (179)
411 2oap_1 GSPE-2, type II secreti 86.7 0.27 9.4E-06 55.0 2.7 22 9-30 261-282 (511)
412 2axn_A 6-phosphofructo-2-kinas 86.6 0.48 1.6E-05 53.2 4.7 35 115-149 117-151 (520)
413 2bbs_A Cystic fibrosis transme 86.6 0.34 1.2E-05 50.0 3.2 20 9-28 65-84 (290)
414 1t95_A Hypothetical protein AF 86.6 1 3.5E-05 44.5 6.4 67 641-709 169-235 (240)
415 2z0h_A DTMP kinase, thymidylat 86.6 0.38 1.3E-05 45.9 3.4 23 10-32 2-24 (197)
416 4a1f_A DNAB helicase, replicat 86.6 1.2 4.2E-05 46.8 7.5 23 9-31 47-69 (338)
417 1vht_A Dephospho-COA kinase; s 86.6 0.39 1.3E-05 46.9 3.5 22 9-30 5-26 (218)
418 2f6r_A COA synthase, bifunctio 86.5 0.41 1.4E-05 49.1 3.8 26 7-33 74-99 (281)
419 2pjz_A Hypothetical protein ST 86.5 0.34 1.2E-05 49.3 3.0 20 10-29 32-51 (263)
420 1ixz_A ATP-dependent metallopr 86.4 0.4 1.4E-05 48.1 3.6 24 9-32 50-73 (254)
421 3a4m_A L-seryl-tRNA(SEC) kinas 86.4 0.44 1.5E-05 48.2 3.9 25 7-31 3-27 (260)
422 1gvn_B Zeta; postsegregational 86.4 0.45 1.6E-05 49.0 4.0 26 7-32 32-57 (287)
423 3lda_A DNA repair protein RAD5 86.4 1.2 4.2E-05 48.0 7.6 22 9-30 179-200 (400)
424 3tui_C Methionine import ATP-b 86.4 0.33 1.1E-05 51.8 3.0 21 9-29 55-75 (366)
425 2p5t_B PEZT; postsegregational 86.3 0.37 1.3E-05 48.6 3.2 27 7-33 31-57 (253)
426 1sxj_A Activator 1 95 kDa subu 86.0 2.9 0.0001 46.7 10.8 27 7-33 76-102 (516)
427 3fvq_A Fe(3+) IONS import ATP- 86.0 0.37 1.3E-05 51.2 3.2 21 10-30 32-52 (359)
428 2vp4_A Deoxynucleoside kinase; 85.9 0.35 1.2E-05 47.9 2.7 25 7-31 19-43 (230)
429 2xb4_A Adenylate kinase; ATP-b 85.9 0.44 1.5E-05 46.9 3.5 24 10-33 2-25 (223)
430 3be4_A Adenylate kinase; malar 85.8 0.44 1.5E-05 46.6 3.4 26 8-33 5-30 (217)
431 1jbk_A CLPB protein; beta barr 85.7 0.48 1.6E-05 44.4 3.5 25 7-31 42-66 (195)
432 3cmu_A Protein RECA, recombina 85.5 2.2 7.4E-05 55.0 10.2 26 7-32 1426-1451(2050)
433 1p9r_A General secretion pathw 85.5 0.44 1.5E-05 51.8 3.5 23 9-31 168-190 (418)
434 3foz_A TRNA delta(2)-isopenten 85.3 0.61 2.1E-05 48.4 4.3 29 5-33 7-35 (316)
435 3nh6_A ATP-binding cassette SU 85.2 0.27 9.4E-06 51.1 1.6 21 9-29 81-101 (306)
436 1z47_A CYSA, putative ABC-tran 85.2 0.41 1.4E-05 50.9 3.0 20 10-29 43-62 (355)
437 2yyz_A Sugar ABC transporter, 85.1 0.41 1.4E-05 50.9 3.0 20 10-29 31-50 (359)
438 2kdo_A Ribosome maturation pro 85.0 0.34 1.2E-05 48.3 2.1 66 641-709 173-238 (252)
439 1iy2_A ATP-dependent metallopr 85.0 0.52 1.8E-05 48.0 3.6 24 9-32 74-97 (278)
440 3ake_A Cytidylate kinase; CMP 84.9 0.52 1.8E-05 45.3 3.5 24 10-33 4-27 (208)
441 1u0l_A Probable GTPase ENGC; p 84.9 0.44 1.5E-05 49.4 3.0 22 9-30 170-191 (301)
442 1q3t_A Cytidylate kinase; nucl 84.8 0.6 2E-05 46.3 3.9 28 6-33 14-41 (236)
443 1lw7_A Transcriptional regulat 84.7 0.41 1.4E-05 51.1 2.8 24 8-31 170-193 (365)
444 2it1_A 362AA long hypothetical 84.7 0.44 1.5E-05 50.8 3.0 21 9-29 30-50 (362)
445 1hqc_A RUVB; extended AAA-ATPa 84.7 2.2 7.4E-05 44.1 8.4 24 8-31 38-61 (324)
446 3io5_A Recombination and repai 84.6 4 0.00014 42.4 10.0 21 11-31 31-51 (333)
447 2w58_A DNAI, primosome compone 84.6 0.56 1.9E-05 45.0 3.5 23 9-31 55-77 (202)
448 1g29_1 MALK, maltose transport 84.5 0.46 1.6E-05 50.9 3.0 20 10-29 31-50 (372)
449 2w0m_A SSO2452; RECA, SSPF, un 84.5 0.56 1.9E-05 45.9 3.5 22 9-30 24-45 (235)
450 3d3q_A TRNA delta(2)-isopenten 84.5 0.62 2.1E-05 49.1 3.9 25 9-33 8-32 (340)
451 3rlf_A Maltose/maltodextrin im 84.4 0.46 1.6E-05 50.9 3.0 20 10-29 31-50 (381)
452 1v43_A Sugar-binding transport 84.4 0.46 1.6E-05 50.8 3.0 21 9-29 38-58 (372)
453 2b8t_A Thymidine kinase; deoxy 84.4 0.69 2.4E-05 45.7 4.0 41 116-156 89-129 (223)
454 1m7g_A Adenylylsulfate kinase; 84.4 0.52 1.8E-05 45.8 3.2 23 8-30 25-47 (211)
455 1in4_A RUVB, holliday junction 84.2 0.54 1.9E-05 49.5 3.5 26 8-33 51-76 (334)
456 2z43_A DNA repair and recombin 84.2 1.8 6.1E-05 45.2 7.5 23 9-31 108-130 (324)
457 3pfi_A Holliday junction ATP-d 84.2 3.3 0.00011 43.1 9.6 26 6-31 53-78 (338)
458 1lv7_A FTSH; alpha/beta domain 84.2 0.58 2E-05 47.0 3.5 25 8-32 45-69 (257)
459 3qf7_A RAD50; ABC-ATPase, ATPa 84.1 0.5 1.7E-05 50.5 3.1 22 10-31 25-46 (365)
460 1xp8_A RECA protein, recombina 83.9 1.9 6.4E-05 46.0 7.5 23 9-31 75-97 (366)
461 3bgw_A DNAB-like replicative h 83.8 1.8 6.1E-05 47.5 7.5 23 9-31 198-220 (444)
462 1a7j_A Phosphoribulokinase; tr 83.6 0.38 1.3E-05 49.7 1.8 25 7-31 4-28 (290)
463 1v5w_A DMC1, meiotic recombina 83.5 2.8 9.6E-05 44.1 8.6 24 8-31 122-145 (343)
464 1svm_A Large T antigen; AAA+ f 83.3 0.64 2.2E-05 49.8 3.5 25 7-31 168-192 (377)
465 2npi_A Protein CLP1; CLP1-PCF1 83.2 0.59 2E-05 51.5 3.3 23 9-31 139-161 (460)
466 3gd7_A Fusion complex of cysti 83.1 0.59 2E-05 50.3 3.2 21 10-30 49-69 (390)
467 3ez9_A Para; DNA binding, wing 83.1 0.98 3.4E-05 48.8 5.0 65 89-155 246-322 (403)
468 3bos_A Putative DNA replicatio 82.8 0.7 2.4E-05 45.3 3.4 25 7-31 51-75 (242)
469 3d31_A Sulfate/molybdate ABC t 82.8 0.4 1.4E-05 50.8 1.6 21 9-29 27-47 (348)
470 2p65_A Hypothetical protein PF 82.6 0.57 2E-05 43.8 2.6 25 7-31 42-66 (187)
471 1q57_A DNA primase/helicase; d 82.3 0.83 2.8E-05 51.0 4.1 24 9-32 243-266 (503)
472 3crm_A TRNA delta(2)-isopenten 82.2 0.85 2.9E-05 47.7 3.9 25 9-33 6-30 (323)
473 1ltq_A Polynucleotide kinase; 82.0 0.7 2.4E-05 47.5 3.2 22 9-30 3-24 (301)
474 4eaq_A DTMP kinase, thymidylat 81.9 1 3.4E-05 44.6 4.1 27 7-33 25-51 (229)
475 1cr0_A DNA primase/helicase; R 81.8 0.78 2.7E-05 47.2 3.4 23 9-31 36-58 (296)
476 3qks_A DNA double-strand break 81.4 0.79 2.7E-05 44.4 3.1 25 9-33 24-48 (203)
477 1oxx_K GLCV, glucose, ABC tran 81.3 0.4 1.4E-05 51.0 1.0 21 9-29 32-52 (353)
478 1n0w_A DNA repair protein RAD5 81.2 0.86 2.9E-05 45.0 3.3 23 9-31 25-47 (243)
479 2ga8_A Hypothetical 39.9 kDa p 81.0 0.87 3E-05 48.1 3.4 28 6-33 22-49 (359)
480 3euj_A Chromosome partition pr 80.9 0.83 2.8E-05 50.5 3.3 23 9-31 30-52 (483)
481 3t15_A Ribulose bisphosphate c 80.4 1.3 4.4E-05 45.6 4.5 27 7-33 35-61 (293)
482 3qkt_A DNA double-strand break 80.3 0.85 2.9E-05 48.1 3.1 22 10-31 25-46 (339)
483 1nlf_A Regulatory protein REPA 80.3 0.98 3.3E-05 46.0 3.5 22 9-30 31-52 (279)
484 2obl_A ESCN; ATPase, hydrolase 80.0 0.93 3.2E-05 48.0 3.3 22 10-31 73-94 (347)
485 3cf0_A Transitional endoplasmi 79.9 1 3.5E-05 46.5 3.6 26 7-32 48-73 (301)
486 2qz4_A Paraplegin; AAA+, SPG7, 79.8 1 3.4E-05 45.1 3.4 26 7-32 38-63 (262)
487 3h4m_A Proteasome-activating n 79.6 1.2 4E-05 45.3 3.9 26 7-32 50-75 (285)
488 1tue_A Replication protein E1; 79.6 0.84 2.9E-05 44.4 2.5 23 9-31 59-81 (212)
489 3b9p_A CG5977-PA, isoform A; A 79.5 1.1 3.7E-05 45.9 3.6 26 7-32 53-78 (297)
490 1p5z_B DCK, deoxycytidine kina 79.1 0.67 2.3E-05 46.8 1.8 24 7-30 23-46 (263)
491 1d1n_A Initiation factor 2; be 78.9 3.2 0.00011 35.0 5.5 71 293-374 9-81 (99)
492 3syl_A Protein CBBX; photosynt 78.8 1.5 5.2E-05 45.0 4.5 27 6-32 65-91 (309)
493 3tqf_A HPR(Ser) kinase; transf 78.8 1.2 4.2E-05 42.0 3.3 23 9-31 17-39 (181)
494 2qmh_A HPR kinase/phosphorylas 78.6 1.2 4.2E-05 43.0 3.3 23 9-31 35-57 (205)
495 2zan_A Vacuolar protein sortin 78.6 4.4 0.00015 44.3 8.3 26 7-32 166-191 (444)
496 1e69_A Chromosome segregation 78.4 1 3.5E-05 47.1 3.0 24 10-33 26-49 (322)
497 3tmk_A Thymidylate kinase; pho 78.2 1.6 5.5E-05 42.8 4.1 30 1-33 1-30 (216)
498 1d2n_A N-ethylmaleimide-sensit 78.1 1.7 5.7E-05 44.0 4.4 26 6-31 62-87 (272)
499 1yqt_A RNAse L inhibitor; ATP- 78.0 1.1 3.7E-05 50.6 3.2 22 9-30 48-69 (538)
500 3n70_A Transport activator; si 78.0 1.1 3.6E-05 40.8 2.6 23 8-30 24-46 (145)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1.9e-140 Score=1260.76 Aligned_cols=750 Identities=69% Similarity=1.081 Sum_probs=650.6
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
|++.+++|||+|+||+|||||||+++|++.+|.+.+...|.++++|++++|++||+||.++.+++.|..........+
T Consensus 13 m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~-- 90 (842)
T 1n0u_A 13 MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK-- 90 (842)
T ss_dssp HHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCS--
T ss_pred hhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccc--
Confidence 556778999999999999999999999999998887667777899999999999999999999999962110000000
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhccc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~ 161 (755)
...++.++.+||||||||.||..++.++++.+|+||+|+|+++|++.||+.+|+++...++|+++|+||+|+...+++
T Consensus 91 --~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~ 168 (842)
T 1n0u_A 91 --QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQ 168 (842)
T ss_dssp --SCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSC
T ss_pred --ccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhc
Confidence 001234789999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHHHHHHHHhhhceee----------------------EE------------------------------------
Q psy16810 162 LDAEDLYQTFQRIVENVNVI----------------------IA------------------------------------ 183 (755)
Q Consensus 162 ~~~~~~~~~~~~ii~~v~~~----------------------~~------------------------------------ 183 (755)
.++++++..+..+++.++.. ..
T Consensus 169 ~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~ 248 (842)
T 1n0u_A 169 VSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDS 248 (842)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSC
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccc
Confidence 99999888888777754321 10
Q ss_pred EecCCCC-------CC-c-c-------------eEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhcc
Q psy16810 184 TYSDDSG-------PM-G-E-------------VRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWL 241 (755)
Q Consensus 184 ~~~~~~~-------~~-~-~-------------~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~ 241 (755)
+|..... +. + . .++++++++.|++.++++++.+|+.++.+++..+.+.++++++++|+
T Consensus 249 ~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~ 328 (842)
T 1n0u_A 249 FFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFL 328 (842)
T ss_dssp EEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHS
T ss_pred cccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhcc
Confidence 0000000 00 0 0 04577888999999999999998899999988888999999999999
Q ss_pred CChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCC
Q psy16810 242 PAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATG 321 (755)
Q Consensus 242 p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g 321 (755)
|++++|||+|++++|+|.+++..+...++.+...++.....+.|++++||+|+|||+..+++.|++++|+|||||+|++|
T Consensus 329 pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g 408 (842)
T 1n0u_A 329 PAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSG 408 (842)
T ss_dssp BHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETT
T ss_pred chHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCC
Confidence 99999999999999999988777766666665433333345668999999999999999999997799999999999999
Q ss_pred CeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCce
Q psy16810 322 QKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPV 401 (755)
Q Consensus 322 ~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv 401 (755)
|.|++++++++.++..++...+|++++.++|++++++++|.|||||+|.|++++.+++|||++...+..++++.++.+|+
T Consensus 409 ~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv 488 (842)
T 1n0u_A 409 QKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPV 488 (842)
T ss_dssp CEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCC
T ss_pred CEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCce
Confidence 99999888776655432223489999999999999999999999999999999766778999987777888888775699
Q ss_pred EEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeecc
Q psy16810 402 VRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVS 481 (755)
Q Consensus 402 ~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~ 481 (755)
++++|+|+++.|++||.+||++|++|||+|++..+||||++|+||||||||||++||+++|+|+++.+++|+|+|||||+
T Consensus 489 ~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi~ 568 (842)
T 1n0u_A 489 VQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVE 568 (842)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEES
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEeec
Confidence 99999999999999999999999999999999855999999999999999999999999998899999999999999999
Q ss_pred ccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeee
Q psy16810 482 EESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLID 561 (755)
Q Consensus 482 ~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~ 561 (755)
++++..+..+++++|++++++++||++++...++.|.+....+.+.+...+.++++|+..+++++|+|||++.++|+|+|
T Consensus 569 ~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~~ 648 (842)
T 1n0u_A 569 SESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVID 648 (842)
T ss_dssp SCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEEE
T ss_pred cccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEEe
Confidence 99988888889999999999999999888888888988888888888899999999999999999999999889999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecE
Q psy16810 562 CTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPV 641 (755)
Q Consensus 562 ~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi 641 (755)
.+.|.+|++++.++|++||+||+++||||||||+||+|+|+||++|.|+++++++||++|+++||++|+++|+|+|||||
T Consensus 649 ~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~LLEPi 728 (842)
T 1n0u_A 649 QTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPV 728 (842)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred cCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeEEeeE
Confidence 99999999999999999999999999999999999999999999999889998999999999999999999999999999
Q ss_pred EEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCC
Q psy16810 642 YLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 721 (755)
Q Consensus 642 ~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~ 721 (755)
|+|||+||++++|+||+||++|||+|+++++.+|++.++|+|++|++|||||+++|||+|||+|+|+|+|+||++||+||
T Consensus 729 ~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~~ 808 (842)
T 1n0u_A 729 FLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDP 808 (842)
T ss_dssp EEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCT
T ss_pred EEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCCc
Confidence 99999999999999999999999999999987776678999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCCCCCCCcccccccC
Q psy16810 722 TDPGSKPYNVVQETRKRKGLKEGLPDLQSYLDKL 755 (755)
Q Consensus 722 ~~~~~~~~~~~~~~r~rkGl~~~~~~~~~~~~~~ 755 (755)
++..|+|++||++|||||||++++|++++|+|+|
T Consensus 809 ~~~~~~a~~~~~~~R~rKGl~~~~p~~~~~~d~~ 842 (842)
T 1n0u_A 809 LDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842 (842)
T ss_dssp TCTTSHHHHHHHHHHHHTTCCSSCCCGGGGCCCC
T ss_pred cchhhHHHHHHHHHHHhCCCCCCCCCHHHhccCC
Confidence 9999999999999999999999999999999987
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.5e-122 Score=1091.84 Aligned_cols=646 Identities=28% Similarity=0.401 Sum_probs=512.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc--ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA--KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
++||||||+||+|||||||+++||+.+|.+++. ..+..+++|++++|++|||||+++.+++.|+..
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~------------ 78 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGS------------ 78 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCT------------
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccC------------
Confidence 689999999999999999999999999988742 223357999999999999999999999999621
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCC
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLD 163 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~ 163 (755)
..+.++|+|||||||||+||..||.+||+++|+||+||||++|+++||+.+|++|.++++|+|+|||||||..+++...
T Consensus 79 -~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~ 157 (709)
T 4fn5_A 79 -RGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRV 157 (709)
T ss_dssp -TSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHH
T ss_pred -cCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHH
Confidence 1123579999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHhhhceeeE-----------------EEecCCC-CC-C--cce-------------EeehhhhcccHHHH
Q psy16810 164 AEDLYQTFQRIVENVNVII-----------------ATYSDDS-GP-M--GEV-------------RVFDSIMNYKKEEA 209 (755)
Q Consensus 164 ~~~~~~~~~~ii~~v~~~~-----------------~~~~~~~-~~-~--~~~-------------~l~e~v~~~~~e~l 209 (755)
.++++..+...+..++..+ ..|..+. +. . ..+ .+.+.+++.+++.+
T Consensus 158 ~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~ 237 (709)
T 4fn5_A 158 VEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELM 237 (709)
T ss_dssp HHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHH
T ss_pred HHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 7777766654433333221 1222111 00 0 000 34566788888888
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCccc
Q psy16810 210 ESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEA 278 (755)
Q Consensus 210 ~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 278 (755)
+.+++. ..++.+++. ..+..... +.++|+ .+.|||+|++++|+|.+++..+... ..++.
T Consensus 238 ~~~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~-----~~~~~ 307 (709)
T 4fn5_A 238 NKYLEE--GELSEAEIK---EGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVS-----PDDET 307 (709)
T ss_dssp HHHHHH--SCCCHHHHH---HHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBC-----CC-CC
T ss_pred HHHHhc--CCccHHHHH---HHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccC-----Ccccc
Confidence 888885 344443322 22333333 456662 3789999999999998876554321 12222
Q ss_pred cccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeee
Q psy16810 279 AIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAI 358 (755)
Q Consensus 279 ~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v 358 (755)
....+.|++++||+++|||+.++++.|+ ++|+|||||+|++||+|+ |.++++++ ++++++.++|++++++
T Consensus 308 ~~~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~sGtl~~G~~v~----~~~~~~~~-----~v~~l~~~~g~~~~~v 377 (709)
T 4fn5_A 308 VEDERHADDNEPFSSLAFKIATDPFVGT-LTFARVYSGVLSSGDSVL----NSVKGKKE-----RVGRMVQMHANQREEI 377 (709)
T ss_dssp SCCEECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEESCEETTCBCB----CTTTCCCC-----BCCCEECCCSSCCCEE
T ss_pred ccccccCCccCcceEEEEEeecccCCCc-eEEEeccCCCCCCCCEEE----EecCCcEE-----eecceeEeecceeeEe
Confidence 3345679999999999999999999998 999999999999999998 66667665 7999999999999999
Q ss_pred ccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-ECC
Q psy16810 359 EDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IEE 437 (755)
Q Consensus 359 ~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~e 437 (755)
++|.|||||+|.|++++ ..++||++...+..++++.++ +|+++++|+|.+++|++||.+||++|++|||+|++. +++
T Consensus 378 ~~~~aGdIv~i~Gl~~~-~~gdTl~~~~~~~~~~~~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~ee 455 (709)
T 4fn5_A 378 KEVRAGDIAALIGMKDV-TTGDTLCSIEKPIILERMDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEE 455 (709)
T ss_dssp SEECTTCEEEECSCSSC-CTTCEEECSSSCCBCC----C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETT
T ss_pred eeecCCCeeeecCCCcC-ccCCEecCCCccccCCCCCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecC
Confidence 99999999999999985 347799998888888888886 899999999999999999999999999999999997 799
Q ss_pred CCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccc-eeeee----cCCceeEEEEEEEeCCCCCcc
Q psy16810 438 SGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQ-VCLSK----SPNKHNRLFMKAAPLPDGLPE 512 (755)
Q Consensus 438 tge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~-~~~~~----~~~~~~~v~l~~~Pl~~~~~~ 512 (755)
|||++|+||||||||||++||+++| ++++.+++|+|+|||||++.+.. ...++ ..+++..+|++++|++
T Consensus 456 tge~vi~g~GELHLei~l~rLr~e~-gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~----- 529 (709)
T 4fn5_A 456 SGQTIISGMGELHLDIIVDRMKREF-GVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAAD----- 529 (709)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHTTT-CCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred CCcEEEEEECHHHHHHHHHHHHHHh-CceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeecc-----
Confidence 9999999999999999999999999 89999999999999999875432 11111 2344556777777743
Q ss_pred ccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCC
Q psy16810 513 DIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEE 592 (755)
Q Consensus 513 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~ 592 (755)
+|.+||.+. .+.+.|...|..+++++.++|++||+||+++||||||
T Consensus 530 ---------------------------------~~e~g~~~~-~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~ 575 (709)
T 4fn5_A 530 ---------------------------------VDEKGNITE-GLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGY 575 (709)
T ss_dssp ---------------------------------BC-CCCBCC-EEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSC
T ss_pred ---------------------------------ccccCCCcC-ceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCC
Confidence 455666433 3667777777788889999999999999999999999
Q ss_pred CeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeee
Q psy16810 593 NLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQ 672 (755)
Q Consensus 593 pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~ 672 (755)
||+||+|+|.|+++|++.++ .+.|..|+++||++|+++|+|+||||||+|||+||++++|+||++|++|||+|++++.
T Consensus 576 pv~~v~v~l~dg~~h~~~s~--~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~ 653 (709)
T 4fn5_A 576 PLIGLKATVFDGSYHDVDSN--EMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMED 653 (709)
T ss_dssp CBSEEEEEEEECCCCTTTBC--HHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEE
T ss_pred ceeeeEEEEEEccccCCCCC--hHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEe
Confidence 99999999999999985543 3468889999999999999999999999999999999999999999999999999998
Q ss_pred cCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCCCCCCCchHHHHHHHHhhcC
Q psy16810 673 VAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQETRKRKG 740 (755)
Q Consensus 673 ~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~~~~~~~~~~~~~~~r~rkG 740 (755)
.+++ .+|+|++|++|||||+++|||+|+|+|+|+|.|+||++||+|+ .+++.++||
T Consensus 654 ~~~~--~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~----------~~~~i~~~G 709 (709)
T 4fn5_A 654 TVSG--KVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNI----------VEALVKKQG 709 (709)
T ss_dssp CSSE--EEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHH----------HHHHHHTC-
T ss_pred cCCC--EEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCH----------HHHHHHhcC
Confidence 7665 5899999999999999999999999999999999999999975 566677776
No 3
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-118 Score=1044.78 Aligned_cols=603 Identities=21% Similarity=0.290 Sum_probs=498.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCcccc--ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA--KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
+||||||+||+|||||||+++||+++|.+++. ..+.++++|++++|++|||||+++.+++.|+
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--------------- 65 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--------------- 65 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS---------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC---------------
Confidence 69999999999999999999999999999853 1223568999999999999999999999995
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCH
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDA 164 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~ 164 (755)
+++|||||||||+||..||.++|+++|+||+||||++|+++||+.+|++|.++++|+|+||||||+.++++....
T Consensus 66 -----~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~ 140 (638)
T 3j25_A 66 -----NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVY 140 (638)
T ss_dssp -----SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHH
T ss_pred -----CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999987654444
Q ss_pred HHHHHHHHHHhhhceeeEEEecCCC-CCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHH-HhccC
Q psy16810 165 EDLYQTFQRIVENVNVIIATYSDDS-GPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLP 242 (755)
Q Consensus 165 ~~~~~~~~~ii~~v~~~~~~~~~~~-~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p 242 (755)
+++++.+...+- +......|.... ........++.+++.+++.++.+++. ..++..+.. ..+...+. ..++|
T Consensus 141 ~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~---~~~~~~~~~~~~~P 214 (638)
T 3j25_A 141 QDIKEKLSAEIV-IKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSG--KSLEALELE---QEESIRFQNCSLFP 214 (638)
T ss_dssp HHHHHTTCCCCC-CCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHH--CCCCSHHHH---HHHHHHHHHTSCCC
T ss_pred HHHHHHhCCCcc-ccceeEeeccccccccchhhhhhhhhcccHHHHhhhccC--CccchHHHH---HHHhhhhccccccc
Confidence 443332211000 000000010000 00011134566777777888888874 444444332 12222222 45677
Q ss_pred C----------hHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEE
Q psy16810 243 A----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGR 312 (755)
Q Consensus 243 ~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~R 312 (755)
+ .+.|||++++++|+|.+ ++++||+++|||+.++++.|+ ++|+|
T Consensus 215 v~~gSa~~~~Gv~~LLd~i~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G~-la~~R 268 (638)
T 3j25_A 215 LYHGSAKSNIGIDNLIEVITNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQR-LAYIR 268 (638)
T ss_dssp CCCCCSTTCCSHHHHHHHHHHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTCC-CCBCC
T ss_pred ccccccccCCCchhHhhhhhccccCccc-------------------------chhhhhcceeeeeeeeccCce-EEEEE
Confidence 3 47999999999999953 235789999999999999998 99999
Q ss_pred EEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCccccc
Q psy16810 313 VFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLR 392 (755)
Q Consensus 313 V~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~ 392 (755)
||||+|+.||.|++. +.+ ++ ++.+++.++|++++++++|.|||||++.|.. . ..++|+++......++
T Consensus 269 V~sG~l~~g~~v~~~----~~~-~~-----~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~~-~-~~~~tl~d~~~~~~~~ 336 (638)
T 3j25_A 269 LYSGVLHLRDSVRVS----EKE-KI-----KVTEMYTSINGELCKIDRAYSGEIVILQNEF-L-KLNSVLGDTKLLPQRK 336 (638)
T ss_dssp BSSBCCCSCCCSSSC----CCC-CS-----SBCCCCSSCCCCBSCCCTTBCCCCSCCCSSS-C-SSEECSSSSSSGGGCS
T ss_pred EEcCcccCCCccccc----cCc-ce-----eEEeeecccccccccccccccceEEEEeccc-c-ccCceecCCCCccccc
Confidence 999999999999743 222 23 6899999999999999999999999998832 1 2345777776666666
Q ss_pred cccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeC
Q psy16810 393 VMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSD 471 (755)
Q Consensus 393 ~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~ 471 (755)
.+.++ +|+++++|+|.++.|++||.++|++|++|||+|++. +++|||++|+|||||||||+++||+++| |+++.+++
T Consensus 337 ~i~~p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef-gvev~~~~ 414 (638)
T 3j25_A 337 KIENP-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY-HVEIELKE 414 (638)
T ss_dssp CCCCC-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT-CCCCEEEC
T ss_pred CccCC-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh-CCcEEEeC
Confidence 77765 899999999999999999999999999999999997 7889999999999999999999999999 99999999
Q ss_pred cEEEEEeeccccccceeeee--cCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEe
Q psy16810 472 PVVSYRETVSEESDQVCLSK--SPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSF 549 (755)
Q Consensus 472 p~V~yrETi~~~~~~~~~~~--~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 549 (755)
|+|+|||||++.++..+... ..+++.+++++++|++++.. +.|+
T Consensus 415 P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~~g------------------------~~f~---------- 460 (638)
T 3j25_A 415 PTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSG------------------------MQYE---------- 460 (638)
T ss_dssp CCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSSCC------------------------CCCC----------
T ss_pred CceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCCCC------------------------cEEE----------
Confidence 99999999999887644332 23456689999999987542 1111
Q ss_pred CcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHH
Q psy16810 550 GPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYAS 629 (755)
Q Consensus 550 gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a 629 (755)
+...+..+..++.++|++||+||+++| |||+||+|++|+|.|+++|+. +++.++|+.|+++||++|
T Consensus 461 -----------~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~--~s~~~~f~~a~~~a~~~a 526 (638)
T 3j25_A 461 -----------SSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSP--VSTPADFRMLAPIVLEQV 526 (638)
T ss_dssp -----------CCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSC--SCCSHHHHHHHHHHHHHH
T ss_pred -----------eeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCC--CCCHHHHHHHHHHHHHHH
Confidence 111333467788899999999999999 999999999999999999973 345678999999999999
Q ss_pred HHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEe
Q psy16810 630 LLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQC 709 (755)
Q Consensus 630 ~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~ 709 (755)
+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..++ .++|+|++|++|||||+++|||+|+|+|+|+|
T Consensus 527 ~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~ 604 (638)
T 3j25_A 527 LKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNN--EVILSGEIPARCIQEYRSDLTFFTNGRSVCLT 604 (638)
T ss_dssp HHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTT--EEEEECCCSSCCHHHHHHHHHHTTTTCCEEEC
T ss_pred HHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCC--eEEEEEEECHHHhhCHHHHHHhhCCCcEEEEE
Confidence 9999999999999999999999999999999999999999987666 47999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCC
Q psy16810 710 VFDHWQVLPGDPTDPG 725 (755)
Q Consensus 710 ~f~~y~~v~~~~~~~~ 725 (755)
+|+||++||+||+++.
T Consensus 605 ~f~~y~~vpgdp~~~~ 620 (638)
T 3j25_A 605 ELKGYHVTTGEPVCQP 620 (638)
T ss_dssp CCCCCCCCCSCCSCCC
T ss_pred EECceEECCCCccccc
Confidence 9999999999999876
No 4
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=1.3e-111 Score=993.69 Aligned_cols=635 Identities=28% Similarity=0.396 Sum_probs=527.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
+.+++|||+|+||+|||||||+++|++.+|.+... ..| .+++|+++.|++||+|+.++..++.|...
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~--------- 75 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTAFWSGM--------- 75 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC-ceeecChhhHHhcCceeeeceEEEEECCc---------
Confidence 45789999999999999999999999998877642 223 46899999999999999999999988510
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcc
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL 160 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~ 160 (755)
..++..+.+||||||||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+||+|+..+++
T Consensus 76 ----~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~ 151 (704)
T 2rdo_7 76 ----AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANF 151 (704)
T ss_pred ----cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccH
Confidence 0122358999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred cCCHHHHHHHHHHHhhh---------------------ceeeEEEecC-CCCC-Cc--c-------------eEeehhhh
Q psy16810 161 QLDAEDLYQTFQRIVEN---------------------VNVIIATYSD-DSGP-MG--E-------------VRVFDSIM 202 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~---------------------v~~~~~~~~~-~~~~-~~--~-------------~~l~e~v~ 202 (755)
.+..+.+...+.. +....+.|.. +.+. .. . -+++|.++
T Consensus 152 ----~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~a 227 (704)
T 2rdo_7 152 ----LKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAA 227 (704)
T ss_pred ----HHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 3333333333221 1111112211 1010 00 0 04567788
Q ss_pred cccHHHHHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccC
Q psy16810 203 NYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYE 271 (755)
Q Consensus 203 ~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~ 271 (755)
+.|++.+++|++ +..++.+++. ..+.+.+. +.|+|+ .+.|||+|++++|+|.+++..+. +.
T Consensus 228 e~dd~l~e~~l~--~~~l~~~~l~---~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~ 299 (704)
T 2rdo_7 228 EASEELMEKYLG--GEELTEAEIK---GALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL 299 (704)
T ss_pred hcCHHHHHHHhc--CCCCCHHHHH---HHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccc---cC
Confidence 889988999888 4667666544 33444444 578884 37999999999999987655432 11
Q ss_pred CCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEec
Q psy16810 272 GPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMM 351 (755)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~ 351 (755)
+..+. ......|++++||+++|||++++++.|+ ++|+|||||+|++||+|+ |.+.++++ +|++++.++
T Consensus 300 -~~~~~-~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~RV~sG~l~~g~~v~----~~~~~~~~-----~v~~l~~~~ 367 (704)
T 2rdo_7 300 -DDGKD-TPAERHASDDEPFSALAFKIATDPFVGN-LTFFRVYSGVVNSGDTVL----NSVKAARE-----RFGRIVQMH 367 (704)
T ss_pred -Ccccc-cccccccCCCCceEEEEEEEEEcCCCce-EEEEEEEeeeecCCCEEE----eCCCCcEE-----EeceEEEEe
Confidence 11110 1134568889999999999999999998 899999999999999999 44455554 799999999
Q ss_pred cCceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCce
Q psy16810 352 GRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMV 431 (755)
Q Consensus 352 g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl 431 (755)
|++++++++|.|||||+|.|++++ .+|+||++...+..++++.++ .|+++++|+|.++.|++||.+||++|++|||+|
T Consensus 368 g~~~~~v~~~~aGdIv~i~gl~~~-~~GdTl~~~~~~~~l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l 445 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAAIGLKDV-TTGDTLCDPDAPIILERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSF 445 (704)
T ss_pred CCCceEcceeCCCCEEEEeCcccC-ccCCEEeCCCcccccCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEE
Confidence 999999999999999999999986 346699988777788888886 799999999999999999999999999999999
Q ss_pred EEE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccc-cceeeeec----CCceeEEEEEEEe
Q psy16810 432 QCI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEES-DQVCLSKS----PNKHNRLFMKAAP 505 (755)
Q Consensus 432 ~v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~-~~~~~~~~----~~~~~~v~l~~~P 505 (755)
++. ++||||++|+|||||||||+++||+++| ++++.+++|+|+|||||++++ +....++. .++|.+++++++|
T Consensus 446 ~v~~~~etge~il~g~GelhLei~~~rL~~~f-~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~eP 524 (704)
T 2rdo_7 446 RVWTDEESNQTIIAGMGELHLDIIVDRMKREF-NVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYP 524 (704)
T ss_pred EEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh-CceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEE
Confidence 997 6899999999999999999999999999 999999999999999999877 65555442 5677899999999
Q ss_pred C---CCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHH
Q psy16810 506 L---PDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQW 582 (755)
Q Consensus 506 l---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~ 582 (755)
+ +++ . .|.+.|...|..+++++.++|++||+|
T Consensus 525 l~~~~~g--------------------------------------------~-g~~f~~~~~g~~~p~~~~~~v~~g~~~ 559 (704)
T 2rdo_7 525 LEPGSNP--------------------------------------------K-GYEFINDIKGGVIPGEYIPAVDKGIQE 559 (704)
T ss_pred CCCCCCC--------------------------------------------C-CcEEEEeccCCcCcHHHHHHHHHHHHH
Confidence 8 432 1 144555556667889999999999999
Q ss_pred HHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhc
Q psy16810 583 AAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNR 662 (755)
Q Consensus 583 a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~ 662 (755)
|+++||||||||+||+|+|+|+++|... +..++|+.|+++||++|+++|+|+||||||+|+|+||++++|+||++|++
T Consensus 560 a~~~G~l~g~pv~~v~v~l~dg~~h~~d--s~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~ 637 (704)
T 2rdo_7 560 QLKAGPLAGYPVVDMGIRLHFGSYHDVD--SSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSR 637 (704)
T ss_pred HHhcCCcCCCceeeEEEEEEeccccCCC--CcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHh
Confidence 9999999999999999999999999742 23467999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCCCCCCCchHHHHHH
Q psy16810 663 RRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQE 734 (755)
Q Consensus 663 Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~~~~~~~~~~~~~~ 734 (755)
|||+|++++..+| .++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ +.+++.+
T Consensus 638 rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~i~~~ 701 (704)
T 2rdo_7 638 RRGMLKGQESEVT--GVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNV------AQAVIEA 701 (704)
T ss_pred CCceEeCceecCC--eEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccH------HHHHHHH
Confidence 9999999998766 47999999999999999999999999999999999999999986 6666654
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.5e-110 Score=982.27 Aligned_cols=626 Identities=29% Similarity=0.424 Sum_probs=506.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
.+++|||+|+||+|+|||||+++|++.+|.+... ..| .+++|+.+.|++||+|+.+....+.|.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~-~~~~D~~~~e~~~giTi~~~~~~~~~~------------ 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG-ASQMDWMEQEQDRGITITSAATTAAWE------------ 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEET------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC-ceecccchhhhhcCceEeeeeEEEEEC------------
Confidence 4679999999999999999999999988877532 122 457999999999999999999988884
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhccc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~ 161 (755)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.|+..+|+++.+.++|+++|+||+|+...+
T Consensus 74 --------~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~-- 143 (693)
T 2xex_A 74 --------GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN-- 143 (693)
T ss_dssp --------TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC--
T ss_pred --------CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccc--
Confidence 7899999999999999999999999999999999999999999999999999999999999999997633
Q ss_pred CCHHHHHHHHHHHhhh---------------------ceeeEEEec-CCCCCCc--c-------------eEeehhhhcc
Q psy16810 162 LDAEDLYQTFQRIVEN---------------------VNVIIATYS-DDSGPMG--E-------------VRVFDSIMNY 204 (755)
Q Consensus 162 ~~~~~~~~~~~~ii~~---------------------v~~~~~~~~-~~~~~~~--~-------------~~l~e~v~~~ 204 (755)
..+..+.+...+.. +....+.|. ....... + -++++.+++.
T Consensus 144 --~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~ 221 (693)
T 2xex_A 144 --FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAET 221 (693)
T ss_dssp --HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444444321 111122332 1010000 0 0455677888
Q ss_pred cHHHHHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCC
Q psy16810 205 KKEEAESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGP 273 (755)
Q Consensus 205 ~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~ 273 (755)
|++.+++|++ +..++.+++. ..+.+.+. +.++|+ .+.|||+|++++|+|.+++..+. + ++
T Consensus 222 dd~l~e~~l~--~~~~~~~~~~---~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~-~~ 292 (693)
T 2xex_A 222 SDELMEKYLG--DEEISVSELK---EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG---H-RA 292 (693)
T ss_dssp CHHHHHHHHT--TCCCCHHHHH---HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEE---E-ET
T ss_pred CHHHHHHHhc--CCCCCHHHHH---HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccc---c-CC
Confidence 8888888888 4566655433 23444444 467773 37999999999999987654432 1 11
Q ss_pred CCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccC
Q psy16810 274 HDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGR 353 (755)
Q Consensus 274 ~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~ 353 (755)
..+ .....+.|++++||+|+|||++++++.|+ ++|+|||||+|++||+|+ |.++++++ +|++++.++|+
T Consensus 293 ~~~-~~~~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~RV~sG~l~~g~~v~----~~~~~~~~-----~v~~l~~~~g~ 361 (693)
T 2xex_A 293 SNP-EEEVIAKADDSAEFAALAFKVMTDPYVGK-LTFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHAN 361 (693)
T ss_dssp TEE-EEEEEECSCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEEETTEEEE----ETTTTEEE-----EECCEEEECSS
T ss_pred Ccc-ccceeecCCCCCceEEEEEEeeecCCCce-EEEEEEEeeeEecCCEEE----ecCCCceE-----EeceEEEEeCC
Confidence 110 12234568899999999999999999998 899999999999999999 44455554 89999999999
Q ss_pred ceeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEE
Q psy16810 354 YVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQC 433 (755)
Q Consensus 354 ~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v 433 (755)
+++++++|.|||||++.|++++. .|+||++...+..++++.++ +|+++++|+|.++.|++||.+||++|++|||+|++
T Consensus 362 ~~~~v~~~~aGdI~~i~gl~~~~-~GdTl~~~~~~~~~~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~ 439 (693)
T 2xex_A 362 SRQEIDTVYSGDIAAAVGLKDTG-TGDTLCGEKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHA 439 (693)
T ss_dssp CEEECSEEETTCEEEEESCSSCC-TTCEEEETTCCEECCCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CceEccccCcCCEEEEeCcccCc-cCCEEecCCCccccCCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEE
Confidence 99999999999999999999864 36699998877788888887 79999999999999999999999999999999999
Q ss_pred E-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeeec----CCceeEEEEEEEeCCC
Q psy16810 434 I-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKS----PNKHNRLFMKAAPLPD 508 (755)
Q Consensus 434 ~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~~----~~~~~~v~l~~~Pl~~ 508 (755)
. ++||||++|+|||||||||+++||+++| ++++.+++|+|+|||||+++++....++. .+++.+++++++|+++
T Consensus 440 ~~~~et~e~il~g~Gelhlei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~ 518 (693)
T 2xex_A 440 HTDEETGQVIIGGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNET 518 (693)
T ss_dssp EC---CCCEEEEESSHHHHHHHHHHHHHHS-CCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCT
T ss_pred EEcCCCCcEEEEeCCHHHHHHHHHHHHHHh-CceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCC
Confidence 8 6899999999999999999999999999 99999999999999999988876655553 4667799999999986
Q ss_pred CCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCC
Q psy16810 509 GLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGV 588 (755)
Q Consensus 509 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gp 588 (755)
+. .|.+.|...|..+++++.++|++||+||+++||
T Consensus 519 g~---------------------------------------------g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~ 553 (693)
T 2xex_A 519 GA---------------------------------------------GFEFENAIVGGVVPREYIPSVEAGLKDAMENGV 553 (693)
T ss_dssp TC---------------------------------------------CCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCS
T ss_pred CC---------------------------------------------CCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCC
Confidence 42 134445556667788899999999999999999
Q ss_pred ccCCCeeeEEEEEEeecccc-cccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhccccee
Q psy16810 589 LSEENLRGVRFNIHDVTLHA-DAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 667 (755)
Q Consensus 589 l~~~pv~~v~v~l~d~~~~~-~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I 667 (755)
|||+||+||+|+|+|+++|. |+. .++|+.|+++||++|+++|+|+||||||+|+|+||++++|+||++|++|||+|
T Consensus 554 l~g~pv~~v~v~l~dg~~h~vds~---~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i 630 (693)
T 2xex_A 554 LAGYPLIDVKAKLYDGSYHDVDSS---EMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRV 630 (693)
T ss_dssp SSSCCBCSEEEEEEEEECCTTTCC---HHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred ccCCceeeEEEEEEeccccCCCCC---HHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEe
Confidence 99999999999999999997 333 35699999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCCCCCCCchHHHHHH
Q psy16810 668 FEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQE 734 (755)
Q Consensus 668 ~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~~~~~~~~~~~~~~ 734 (755)
+++++.+| .++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ +.+++.+
T Consensus 631 ~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~i~~~ 689 (693)
T 2xex_A 631 DGMEPRGN--AQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSI------AEDIIKK 689 (693)
T ss_dssp EEEEEETT--EEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHH------HHHHHHH
T ss_pred ecccccCC--eEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhH------HHHHHHH
Confidence 99998776 47999999999999999999999999999999999999999986 6677665
No 6
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=6e-110 Score=978.75 Aligned_cols=619 Identities=29% Similarity=0.440 Sum_probs=457.2
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc--ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA--KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
..+++|||+|+||+|||||||+++|++.+|.+... .....+++|+++.|++||+|+.+....+.|.
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~------------ 75 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------------ 75 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET------------
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC------------
Confidence 34679999999999999999999999988877532 1122468999999999999999999988884
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhccc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~ 161 (755)
++.++|||||||.||..++.++++.+|++|+|+|+++|++.||..+|+++.+.++|+++|+||+|+..++
T Consensus 76 --------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-- 145 (691)
T 1dar_A 76 --------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD-- 145 (691)
T ss_dssp --------TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC--
T ss_pred --------CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC--
Confidence 7899999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCHHHHHHHHHHHhhh---------------------ceeeEEEec-CCCCCCc--c-------------eEeehhhhcc
Q psy16810 162 LDAEDLYQTFQRIVEN---------------------VNVIIATYS-DDSGPMG--E-------------VRVFDSIMNY 204 (755)
Q Consensus 162 ~~~~~~~~~~~~ii~~---------------------v~~~~~~~~-~~~~~~~--~-------------~~l~e~v~~~ 204 (755)
..+....+...+.. +....+.|. ....... + -++++.+++.
T Consensus 146 --~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~ 223 (691)
T 1dar_A 146 --LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADF 223 (691)
T ss_dssp --HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTT
T ss_pred --HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444443321 111223332 1110000 0 0456677888
Q ss_pred cHHHHHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCC
Q psy16810 205 KKEEAESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGP 273 (755)
Q Consensus 205 ~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~ 273 (755)
+++.++++++ +..++.+++. ..+.+.+. +.++|+ .+.|||+|++++|+|.+++..+.. ++
T Consensus 224 dd~l~e~~l~--~~~~~~~~~~---~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~----~~ 294 (691)
T 1dar_A 224 DENIMLKYLE--GEEPTEEELV---AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGT----TP 294 (691)
T ss_dssp CHHHHHHHHH--TCCCCHHHHH---HHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEE----CS
T ss_pred CHHHHHHHHC--CCCCCHHHHH---HHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhccccccc----CC
Confidence 9999999998 5667665543 23344444 456773 379999999999999876554321 11
Q ss_pred CCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccC
Q psy16810 274 HDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGR 353 (755)
Q Consensus 274 ~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~ 353 (755)
.++ ...+.|++++||+++|||++.+++.|+ ++|+|||||+|++||+|+ |.++++++ +|++++.++|+
T Consensus 295 -~~~--~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~RV~sG~l~~g~~v~----~~~~~~~~-----~v~~l~~~~g~ 361 (691)
T 1dar_A 295 -EGE--VVEIHPDPNGPLAALAFKIMADPYVGR-LTFIRVYSGTLTSGSYVY----NTTKGRKE-----RVARLLRMHAN 361 (691)
T ss_dssp -SSC--EEEECCCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEEESSCEEE----ETTTTEEE-----ECCEEEEECSS
T ss_pred -Ccc--ccccccCCCCCcEEEEEEEEEcCCCCc-EEEEEEeeeeEecCCEEE----ecCCCcEE-----EEceEEEEeCC
Confidence 111 234568899999999999999999998 899999999999999999 44445554 79999999999
Q ss_pred ceeeeccccCCCeEEeccccceeeecceeecCCCc-cccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceE
Q psy16810 354 YVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDA-HNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQ 432 (755)
Q Consensus 354 ~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~-~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~ 432 (755)
+++++++|.|||||++.|++++. .|+||++...+ ..++++.++ .|+++++|+|.++.|++||.+||++|++|||+|+
T Consensus 362 ~~~~v~~~~aGdI~~i~gl~~~~-~Gdtl~~~~~~~~~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~ 439 (691)
T 1dar_A 362 HREEVEELKAGDLGAVVGLKETI-TGDTLVGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFR 439 (691)
T ss_dssp CEEEESEEETTCEEEEECCSSCC-TTCEEEETTCCCCBCC---------------------------------CCCCSCE
T ss_pred CceEcceecCCCEEEEeCcccCc-cCCEEecCCCcccccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEE
Confidence 99999999999999999999864 46699988776 778888886 7999999999999999999999999999999999
Q ss_pred EE-ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeeec----CCceeEEEEEEEeCC
Q psy16810 433 CI-IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKS----PNKHNRLFMKAAPLP 507 (755)
Q Consensus 433 v~-~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~~----~~~~~~v~l~~~Pl~ 507 (755)
+. ++||||++|+|||||||||+++||+++| ++++.+++|+|+|||||+++++....++. .+++.+++++++|++
T Consensus 440 v~~~~et~e~i~~g~Gelhlei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~ 518 (691)
T 1dar_A 440 VSTHPETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP 518 (691)
T ss_dssp EEC-----CEEEEESCCC---------CCCE-EEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECC
T ss_pred EEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh-CceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECC
Confidence 98 6899999999999999999999999999 99999999999999999988876655543 466779999999998
Q ss_pred CCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcC
Q psy16810 508 DGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEG 587 (755)
Q Consensus 508 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~G 587 (755)
++.. +.+.|...|..+++++.++|++||+||+++|
T Consensus 519 ~g~g---------------------------------------------~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G 553 (691)
T 1dar_A 519 RGSG---------------------------------------------FEFVNAIVGGVIPKEYIPAVQKGIEEAMQSG 553 (691)
T ss_dssp TTCC---------------------------------------------EEEEECCCTTSSCTTTHHHHHHHHHHHTTSC
T ss_pred CCCC---------------------------------------------CEEeecccCCcCcHHHHHHHHHHHHHHHhcC
Confidence 6521 2333444566677888999999999999999
Q ss_pred CccCCCeeeEEEEEEeecccc-cccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccce
Q psy16810 588 VLSEENLRGVRFNIHDVTLHA-DAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGH 666 (755)
Q Consensus 588 pl~~~pv~~v~v~l~d~~~~~-~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~ 666 (755)
|||||||+||+|+|+|+++|. |+. .++|+.|+++||++|+++|+|+||||||+|+|+||++++|+||++|++|||+
T Consensus 554 ~l~g~pv~~v~v~l~dg~~h~vds~---~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~ 630 (691)
T 1dar_A 554 PLIGFPVVDIKVTLYDGSYHEVDSS---EMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQ 630 (691)
T ss_dssp TTTSCCBCSEEEEEEEECCCTTTBC---HHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCC
T ss_pred CccCCceeeEEEEEEeeeccccCcc---hHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCce
Confidence 999999999999999999997 443 3569999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCC
Q psy16810 667 VFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 721 (755)
Q Consensus 667 I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~ 721 (755)
|++++..+| .++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++
T Consensus 631 i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 683 (691)
T 1dar_A 631 ILGMEPRGN--AQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQV 683 (691)
T ss_dssp EEEEEEETT--EEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHH
T ss_pred eecceecCC--eEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhH
Confidence 999998776 47999999999999999999999999999999999999999876
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1.8e-102 Score=912.53 Aligned_cols=602 Identities=25% Similarity=0.354 Sum_probs=502.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---ccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
.++.|||+|+||+|||||||+++|++..+.+... ..| ..++|+.+.|++||+|+.+....+.|.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g-~~~~d~~~~e~~~giti~~~~~~~~~~------------ 72 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG-TTTTDYTPEAKLHRTTVRTGVAPLLFR------------ 72 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT-CCSSCCSHHHHHTTSCCSCEEEEEEET------------
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC-cccccCCHHHHhcCCeEEecceEEeeC------------
Confidence 3578999999999999999999999888765421 112 357899999999999999988888874
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhccc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~ 161 (755)
++.+||+|||||.+|..++.++++.+|++++|+|+.+|+..||+.+|+++...++|+++|+||+|+. .+
T Consensus 73 --------~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~-- 141 (665)
T 2dy1_A 73 --------GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GD-- 141 (665)
T ss_dssp --------TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CC--
T ss_pred --------CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hh--
Confidence 7899999999999999999999999999999999999999999999999999999999999999996 32
Q ss_pred CCHHHHHHHHHHHhh--------------------hceeeEEEecCCC----CCCcc---------eEeehhhhcccHHH
Q psy16810 162 LDAEDLYQTFQRIVE--------------------NVNVIIATYSDDS----GPMGE---------VRVFDSIMNYKKEE 208 (755)
Q Consensus 162 ~~~~~~~~~~~~ii~--------------------~v~~~~~~~~~~~----~~~~~---------~~l~e~v~~~~~e~ 208 (755)
..+..+.+...+. .+....+.|..+. ..... -++++.+++.|++.
T Consensus 142 --~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l 219 (665)
T 2dy1_A 142 --YYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGL 219 (665)
T ss_dssp --HHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3344444444333 1111112222110 00000 03556778888888
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCcc
Q psy16810 209 AESLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDE 277 (755)
Q Consensus 209 l~~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~ 277 (755)
++++++ +..++.+++. ..+.+.+. +.|+|. .+.||+++++++|+|.++
T Consensus 220 ~e~~l~--~~~l~~~~~~---~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~---------------- 278 (665)
T 2dy1_A 220 LEKYLE--GEEVTGEALE---KAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER---------------- 278 (665)
T ss_dssp HHHHHH--TCCCCHHHHH---HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH----------------
T ss_pred HHHHHC--CCCCCHHHHH---HHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc----------------
Confidence 999988 5677766544 23444444 456672 379999999999999532
Q ss_pred ccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceee
Q psy16810 278 AAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEA 357 (755)
Q Consensus 278 ~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~ 357 (755)
++++||+++|||++.+++.|+ ++|+|||||+|++||.|++. + +++ +|++++.++|+++++
T Consensus 279 --------~~~~p~~~~V~k~~~d~~~G~-~~~~rV~sG~l~~g~~v~~~----~--~~~-----~v~~l~~~~g~~~~~ 338 (665)
T 2dy1_A 279 --------FGDGPPLAKVFKVQVDPFMGQ-VAYLRLYRGRLKPGDSLQSE----A--GQV-----RLPHLYVPMGKDLLE 338 (665)
T ss_dssp --------HCSCSCEEEEEEEEEETTTEE-EEEEEEEESEECTTEEEBCT----T--SCE-----EESSEEEEETTEEEE
T ss_pred --------CCCCCeEEEEEEEEEcCCCCe-EEEEEEcccEEecCCEEEcC----C--CeE-----EEeEEEEEeCCCeeE
Confidence 146899999999999999998 89999999999999999943 2 333 799999999999999
Q ss_pred eccccCCCeEEeccccceeeecceeecCCCc--cccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-
Q psy16810 358 IEDVPSGNICGLVGVDQFLVKTGTITTFKDA--HNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI- 434 (755)
Q Consensus 358 v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~--~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~- 434 (755)
+++|.|||||++.|++++. +|+||++...+ ..++++.++ .|+++++|+|.+++|++||.++|++|++|||+|++.
T Consensus 339 v~~a~aG~iv~i~gl~~~~-~Gdtl~~~~~~~~~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~ 416 (665)
T 2dy1_A 339 VEEAEAGFVLGVPKAEGLH-RGMVLWQGEKPESEEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLER 416 (665)
T ss_dssp ESCEETTCEEEESSCTTCC-TTCEEESSSCCCGGGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCEECCCCEEEEeCCccCc-cCCEEecCCCccccccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEE
Confidence 9999999999999999853 46699987766 678888886 799999999999999999999999999999999998
Q ss_pred ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeeec----CCceeEEEEEEEeCCCCC
Q psy16810 435 IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKS----PNKHNRLFMKAAPLPDGL 510 (755)
Q Consensus 435 ~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~~----~~~~~~v~l~~~Pl~~~~ 510 (755)
+++|||++|+|||||||||+++||+ +| ++++.+++|+|+|||||+++++....++. .+++.+++++++|++ +
T Consensus 417 ~~et~e~i~~g~Gelhlei~~~rl~-~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-g- 492 (665)
T 2dy1_A 417 QEETGELLLWGHGELHLATAKERLQ-DY-GVEVEFSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-E- 492 (665)
T ss_dssp CTTTCCEEEEESSHHHHHHHHHHHH-HT-TCCEEEECCCCCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS-S-
T ss_pred cCCCCCEEEEecCHHHHHHHHHHHH-HC-CceEEEeCCEEEEEEeeccceeeeeecccccCCCcceEEEEEEEEECC-C-
Confidence 5899999999999999999999999 99 99999999999999999988876555543 245568999999986 1
Q ss_pred ccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCcc
Q psy16810 511 PEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLS 590 (755)
Q Consensus 511 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~ 590 (755)
+.+.+...|.....++.++|++||+||+++||||
T Consensus 493 ----------------------------------------------~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~ 526 (665)
T 2dy1_A 493 ----------------------------------------------YGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLA 526 (665)
T ss_dssp ----------------------------------------------CEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTT
T ss_pred ----------------------------------------------CEEeeeccCCcchHHHHHHHHHHHHHHHhcCCcc
Confidence 1111222333445667799999999999999999
Q ss_pred CCCeeeEEEEEEeecccc-cccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeee
Q psy16810 591 EENLRGVRFNIHDVTLHA-DAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFE 669 (755)
Q Consensus 591 ~~pv~~v~v~l~d~~~~~-~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~ 669 (755)
|+||+||+|+|+|+++|. |++ ..+|+.|+++||++|+++|+|+||||||+|+|+||++++|+||++|++|||+|++
T Consensus 527 g~pv~~v~v~l~dg~~h~~ds~---~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~ 603 (665)
T 2dy1_A 527 GFPVMGFKAIVYNGSYHEVDSS---DLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILG 603 (665)
T ss_dssp SCCBCSEEEEEEEEECCTTTBC---HHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred CCceeeEEEEEEeeeccCCCCC---HHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeC
Confidence 999999999999999997 443 3569999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeecCCCCCCCCCchHHHHHHHH
Q psy16810 670 EMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQETR 736 (755)
Q Consensus 670 ~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v~~~~~~~~~~~~~~~~~~r 736 (755)
++..++ .++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ +.+++.+.+
T Consensus 604 ~~~~~~--~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~~~~~~~ 662 (665)
T 2dy1_A 604 MEQEGA--LSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHL------AQRIVQERA 662 (665)
T ss_dssp EEEETT--EEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHH------HHHHHHHHH
T ss_pred cEecCC--eEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccH------HHHHHHHHh
Confidence 998764 58999999999999999999999999999999999999999986 777877743
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=3.2e-79 Score=698.62 Aligned_cols=423 Identities=22% Similarity=0.286 Sum_probs=310.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc---c---cCcccccCCchhhhhhccccccceEEEEeeeCcccccccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA---K---AGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFIT 79 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~---~---~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 79 (755)
+++|||||+||+|||||||+++||+++|.|.+. . .+..+++|++++|++|||||+++.+++.|+
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~---------- 98 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR---------- 98 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET----------
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC----------
Confidence 479999999999999999999999999998742 2 223468999999999999999999999995
Q ss_pred CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhc
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLE 159 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~ 159 (755)
+++|||||||||+||..||.++|+++|+||+||||++|+++||+.+|++|.++++|+|+||||||+.+++
T Consensus 99 ----------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 99 ----------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH 168 (548)
T ss_dssp ----------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC
T ss_pred ----------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCCHHHHHHHHHHHhhhceee-----------------EEEecCCCCCCcceEeehhhhcccHHHHHHHH---------
Q psy16810 160 LQLDAEDLYQTFQRIVENVNVI-----------------IATYSDDSGPMGEVRVFDSIMNYKKEEAESLL--------- 213 (755)
Q Consensus 160 ~~~~~~~~~~~~~~ii~~v~~~-----------------~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~ll--------- 213 (755)
+....++++..|..-+..++.. .+.|..+.+. .......+...+++.+++++
T Consensus 169 ~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (548)
T 3vqt_A 169 PLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGG--RIQSGIVIHGADDPQLDEYLGDQAEQLRM 246 (548)
T ss_dssp HHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC---------CCCEECCSTTCTHHHHHHGGGHHHHHH
T ss_pred hhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCC--cccccccccccchHHHHHHHHHHHHHhhh
Confidence 5433444443332211112211 1112111100 00000000111111122211
Q ss_pred -----HHhCCCCCccccccchHHHHHHH-HHhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCcc
Q psy16810 214 -----SKLGIELKPEDKEKDGKALLKVV-MRTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDE 277 (755)
Q Consensus 214 -----e~~~~~l~~~~~~~~~~~l~~~~-~~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~ 277 (755)
...+..... ..+ .+.++|+ .++|||+|++++|+|.+......
T Consensus 247 ~~~l~~~~~~~~~~-----------e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~----------- 304 (548)
T 3vqt_A 247 DLALLEEAGTPFDE-----------ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATR----------- 304 (548)
T ss_dssp HHHHHHHHCCCCCH-----------HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSS-----------
T ss_pred HHHHHhhccCchhH-----------HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCcccccc-----------
Confidence 111111110 112 2456662 48999999999999975432110
Q ss_pred ccccccccCCCCCeEEEEEeeecc---CCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCc
Q psy16810 278 AAIGIKNCDPNAPLMMYVSKMVPT---SDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRY 354 (755)
Q Consensus 278 ~~~~~~~~~~~~pl~~~V~K~~~~---~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~ 354 (755)
...+.+.||+++|||+..+ ++.|+ ++|+|||||+|++|+.|+ |.++++++ ++++++.++|++
T Consensus 305 -----~~~~~~~p~~a~vfKi~~~~~~~~~Gr-la~~RV~sG~l~~g~~v~----~~~~~~~~-----rv~~l~~~~g~~ 369 (548)
T 3vqt_A 305 -----VVEPGEEAFTGVVFKIQANMDKAHRDR-MAFLRICSGTFTRGMRLK----HHRTGKDV-----TVANATIFMAQD 369 (548)
T ss_dssp -----EECTTCSSCEEEEEEEECC-------C-EEEEEEEESCEETTCEEE----ETTTTEEE-----ECTTCEECCCSS
T ss_pred -----ccCCCCcCceEEEEEEEccCCcCCCCe-EEEEEEecceecCCCEEE----eecccccc-----ccchhhhhcccc
Confidence 0123467999999999887 78998 999999999999999999 55556665 799999999999
Q ss_pred eeeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE
Q psy16810 355 VEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI 434 (755)
Q Consensus 355 ~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~ 434 (755)
++++++|.|||||+|.|++++. .++||++.+.+..++++.++ +|+++++|+|+++.|.+||.++|++|++|||+..++
T Consensus 370 ~~~v~~a~AGdIvai~gl~~~~-~GDTl~~~~~~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~ 447 (548)
T 3vqt_A 370 RTGVEEAFPGDIIGIPNHGTIK-IGDTFTESKEVLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFR 447 (548)
T ss_dssp CCSSCEECTTCEEEEECSSCCC-TTCEEESSSSCCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEE
T ss_pred ccccCEEecCCEEEecCCccCc-cCCEecCCCCccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEE
Confidence 9999999999999999999864 36699998887788888876 899999999999999999999999999999976667
Q ss_pred ECCCCceEEEeechhHHHHHHHHHHhhccceeeE-----eeCcEEEEEeeccccccceeee
Q psy16810 435 IEESGEHIVAGAGELHLEICLKDLEEDHACIPIK-----KSDPVVSYRETVSEESDQVCLS 490 (755)
Q Consensus 435 ~~etge~il~g~GElHLei~~~rL~~~f~~vev~-----~~~p~V~yrETi~~~~~~~~~~ 490 (755)
+++|||++|+|||||||||+++||+++| ||++. ++.|+|+|||||++.++....+
T Consensus 448 ~~et~e~il~g~GeLHLeI~~erL~~ey-~vev~~e~v~~~~P~V~YrEti~~~~~~~~~~ 507 (548)
T 3vqt_A 448 PLVNNDYILGAVGVLQFDVIVARLADEY-GVDAVYEGVSTHTARWVYCEDKKIFADFQDYH 507 (548)
T ss_dssp ESSSCCCEEEESSTHHHHHHHHHHHHHH-CCCEEEEECSCCEEEEEECSCHHHHHHHHHHT
T ss_pred ECCCCcEEEEEECHHHHHHHHHHHHHHh-CCCEEEeeccccCceEEecCCccchhhhhhhh
Confidence 8999999999999999999999999999 99976 5789999999999877764433
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=6.7e-77 Score=680.41 Aligned_cols=487 Identities=26% Similarity=0.391 Sum_probs=374.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+++|||+|+||+|||||||+++|++.+|.+.....+ .+++|+++.|++||+|+++..+.+.|..
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-------------- 67 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-------------- 67 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC--------------
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc--------------
Confidence 4689999999999999999999999999988754333 4689999999999999999999999861
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCH
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDA 164 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~ 164 (755)
.++..+.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|.++...++|+|+|+||+|+..+ ..
T Consensus 68 -~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a----~~ 142 (600)
T 2ywe_A 68 -KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA----DV 142 (600)
T ss_dssp -TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC----CH
T ss_pred -CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc----CH
Confidence 1224589999999999999999999999999999999999999999999999999999999999999999753 22
Q ss_pred HHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC-C
Q psy16810 165 EDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP-A 243 (755)
Q Consensus 165 ~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p-~ 243 (755)
++....+... ++ .. ..+... .+.... +
T Consensus 143 ~~v~~el~~~---lg--------------------------------------~~--~~~vi~---------vSAktg~G 170 (600)
T 2ywe_A 143 DRVKKQIEEV---LG--------------------------------------LD--PEEAIL---------ASAKEGIG 170 (600)
T ss_dssp HHHHHHHHHT---SC--------------------------------------CC--GGGCEE---------CBTTTTBS
T ss_pred HHHHHHHHHh---hC--------------------------------------CC--cccEEE---------EEeecCCC
Confidence 2222222211 11 00 000000 000000 1
Q ss_pred hHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCe
Q psy16810 244 GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQK 323 (755)
Q Consensus 244 g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~ 323 (755)
...|++++++++|+|. .++++||.++||+++.+++.|. ++++||++|+|++||.
T Consensus 171 I~~Lle~I~~~lp~p~-------------------------~~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 171 IEEILEAIVNRIPPPK-------------------------GDPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDK 224 (600)
T ss_dssp HHHHHHHHHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCE
T ss_pred chHHHHHHHHhccccc-------------------------ccccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCE
Confidence 2679999999999983 2467899999999999999998 9999999999999999
Q ss_pred EEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec-c---ccceeeecceeecCCCc--ccccccccc
Q psy16810 324 ARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV-G---VDQFLVKTGTITTFKDA--HNLRVMKFS 397 (755)
Q Consensus 324 v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~~~~gTl~~~~~~--~~~~~~~~~ 397 (755)
|++.+ +++.+ ++.+++.+.+ +..+++++.||||+++. | ++++ ..|+||+....+ .+++.+.++
T Consensus 225 I~~~~----~~~~~-----~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~-~~GDtl~~~~~~~~~~l~~~~~~ 293 (600)
T 2ywe_A 225 IMLMS----TGKEY-----EVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI-RIGDTITHAKNPTKEPVPGFQPA 293 (600)
T ss_dssp EEETT----TTEEE-----ECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS-CTTCEEEESSSCCSSCCSCCCCC
T ss_pred EEecc----ccceE-----eeecccccCC-CceECCEEecCceeeeeccccchhhc-cCCCEEEeCCCccccccCCCCCC
Confidence 99754 24433 6888888776 47899999999998884 4 4454 236699987665 357777765
Q ss_pred CCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEe-----echhHHHHHHHHHHhhccceeeEeeCc
Q psy16810 398 VSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAG-----AGELHLEICLKDLEEDHACIPIKKSDP 472 (755)
Q Consensus 398 ~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g-----~GElHLei~~~rL~~~f~~vev~~~~p 472 (755)
+|+++++|+|.+..|.++|.++|++|.+|||+|++. +||+|++++| ||||||||+++||+++| |+++.+++|
T Consensus 294 -~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~-~~~v~~~~P 370 (600)
T 2ywe_A 294 -KPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY-GVKIITTAP 370 (600)
T ss_dssp -CCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS-CCCEEECCC
T ss_pred -CcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc-CceEEEEee
Confidence 899999999999999999999999999999999997 6788877777 99999999999999999 999999999
Q ss_pred EEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcC
Q psy16810 473 VVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPD 552 (755)
Q Consensus 473 ~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~ 552 (755)
+|+|||||++. + +. +++
T Consensus 371 ~V~yreti~~~--g--------~~----~~~------------------------------------------------- 387 (600)
T 2ywe_A 371 NVIYRVKKKFT--D--------EV----IEV------------------------------------------------- 387 (600)
T ss_dssp EECEEEEETTC--S--------SC----EEE-------------------------------------------------
T ss_pred eEEEEEEecCC--C--------cE----EEE-------------------------------------------------
Confidence 99999999741 1 10 000
Q ss_pred CCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHh
Q psy16810 553 GTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLT 632 (755)
Q Consensus 553 ~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~ 632 (755)
.+ | +++|+.+ +
T Consensus 388 ----------------~~-----------------p-~~~p~~~----------~------------------------- 398 (600)
T 2ywe_A 388 ----------------RN-----------------P-MDFPDNA----------G------------------------- 398 (600)
T ss_dssp ----------------SS-----------------G-GGSCSCG----------G-------------------------
T ss_pred ----------------eC-----------------h-hhCCCCC----------c-------------------------
Confidence 00 1 4567665 1
Q ss_pred cCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhh-cCchHHHhhhcCCcceeEeEe
Q psy16810 633 ACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNES-FGFTADLRSNTGGQAFPQCVF 711 (755)
Q Consensus 633 a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~g~~~~~f 711 (755)
.-+.||||||+++|.+|++++|+||++|++|||++++++..++. ...|+|.+|++|| +||.++|||+|+|+|+|+++|
T Consensus 399 ~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~-~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f 477 (600)
T 2ywe_A 399 LIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPN-TVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEF 477 (600)
T ss_dssp GEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETT-EEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCC-EEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEe
Confidence 00379999999999999999999999999999999999985442 5799999999999 899999999999999999999
Q ss_pred cceeec---------CCCCCCCC----------CchHHHHHHHH
Q psy16810 712 DHWQVL---------PGDPTDPG----------SKPYNVVQETR 736 (755)
Q Consensus 712 ~~y~~v---------~~~~~~~~----------~~~~~~~~~~r 736 (755)
+||+++ .+++.+.- ..+|+++.+.+
T Consensus 478 ~~y~~~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~ 521 (600)
T 2ywe_A 478 IGYRPSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLR 521 (600)
T ss_dssp EEEEECCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHH
T ss_pred ccceEccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999 77776642 45777777655
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=6.7e-75 Score=665.58 Aligned_cols=484 Identities=26% Similarity=0.388 Sum_probs=365.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+++|||+|+||+|||||||+++|++.+|.+.....+ .+++|+++.|++||+|+.+..+.+.|..
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~--------------- 65 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA--------------- 65 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC---------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec---------------
Confidence 479999999999999999999999999988754333 4689999999999999999999999961
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
.++.++.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|.++...++|+|+|+||+|+..+ ..+
T Consensus 66 ~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a----~~~ 141 (599)
T 3cb4_D 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA----DPE 141 (599)
T ss_dssp TTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC----CHH
T ss_pred CCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc----cHH
Confidence 1224689999999999999999999999999999999999999999999999999999999999999999753 223
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChH
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGE 245 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~ 245 (755)
+....+...+ +.. .. .+.. .+...|. +.+
T Consensus 142 ~v~~ei~~~l---g~~-----~~-----------~vi~--------vSAktg~------------------------GI~ 170 (599)
T 3cb4_D 142 RVAEEIEDIV---GID-----AT-----------DAVR--------CSAKTGV------------------------GVQ 170 (599)
T ss_dssp HHHHHHHHHT---CCC-----CT-----------TCEE--------ECTTTCT------------------------THH
T ss_pred HHHHHHHHHh---CCC-----cc-----------eEEE--------eecccCC------------------------Cch
Confidence 3222222211 100 00 0000 0000000 126
Q ss_pred HHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEE
Q psy16810 246 ALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKAR 325 (755)
Q Consensus 246 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~ 325 (755)
.|++++++++|+|. .++++|+.++||+++.+++.|. ++++||++|+|++||.++
T Consensus 171 ~Ll~~I~~~lp~p~-------------------------~~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~ 224 (599)
T 3cb4_D 171 DVLERLVRDIPPPE-------------------------GDPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVK 224 (599)
T ss_dssp HHHHHHHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEE
T ss_pred hHHHHHhhcCCCcc-------------------------ccccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEE
Confidence 79999999999983 2467899999999999999998 999999999999999999
Q ss_pred EccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec-c---ccceeeecceeecCCCc--cccccccccCC
Q psy16810 326 IMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV-G---VDQFLVKTGTITTFKDA--HNLRVMKFSVS 399 (755)
Q Consensus 326 i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~~~~gTl~~~~~~--~~~~~~~~~~~ 399 (755)
+.+ +++.+ ++.+++.+.+. .++++++.||||+++. | ++++. .|+|+++...+ ..++.+.++ +
T Consensus 225 ~~~----~~~~~-----~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~-~GDtl~~~~~~~~~~l~~~~~~-~ 292 (599)
T 3cb4_D 225 VMS----TGQTY-----NADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAP-VGDTLTLARNPAEKALPGFKKV-K 292 (599)
T ss_dssp ETT----TCCEE-----ECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSC-TTCEEEESSSCCSSCCTTCCCC-C
T ss_pred ecc----cccee-----EEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCc-cCCEeeecCCccccccccccCC-C
Confidence 754 34443 68888887765 7899999999998874 4 44542 36699987665 456677765 8
Q ss_pred ceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEe-----echhHHHHHHHHHHhhccceeeEeeCcEE
Q psy16810 400 PVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAG-----AGELHLEICLKDLEEDHACIPIKKSDPVV 474 (755)
Q Consensus 400 Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g-----~GElHLei~~~rL~~~f~~vev~~~~p~V 474 (755)
|+++++++|.+..|.++|.++|++|.++||+|.+. ++|+|+++.| ||||||||+++||+++| |+++.+++|+|
T Consensus 293 P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~-~~~~~~~~P~V 370 (599)
T 3cb4_D 293 PQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY-DLDLITTAPTV 370 (599)
T ss_dssp CCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS-CCCEEECCCEE
T ss_pred cceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc-CceEEEEeeeE
Confidence 99999999999999999999999999999999987 6788888777 99999999999999999 99999999999
Q ss_pred EEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccCCCCCCchhhhhhhhhhhcccccccccceEEEeCcCCC
Q psy16810 475 SYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGT 554 (755)
Q Consensus 475 ~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~ 554 (755)
+|||||++.... .|+ .|
T Consensus 371 ~yreti~~g~~~--------------------------------------------------~~~----------~p--- 387 (599)
T 3cb4_D 371 VYEVETTSREVI--------------------------------------------------YVD----------SP--- 387 (599)
T ss_dssp CEEEEESSSCEE--------------------------------------------------EES----------SG---
T ss_pred EEEEEecCCceE--------------------------------------------------Eec----------Ch---
Confidence 999999752211 000 00
Q ss_pred CCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcC
Q psy16810 555 GPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTAC 634 (755)
Q Consensus 555 ~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~ 634 (755)
.++|..+ .-
T Consensus 388 -----------------------------------~~~p~~~------------------------------------~~ 396 (599)
T 3cb4_D 388 -----------------------------------SKLPAVN------------------------------------NI 396 (599)
T ss_dssp -----------------------------------GGSCCGG------------------------------------GE
T ss_pred -----------------------------------hhCCCcc------------------------------------cc
Confidence 0112110 00
Q ss_pred CceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhh-cCchHHHhhhcCCcceeEeEecc
Q psy16810 635 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNES-FGFTADLRSNTGGQAFPQCVFDH 713 (755)
Q Consensus 635 ~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~g~~~~~f~~ 713 (755)
+.||||||+++|.+|++|+|+||++|++|||++++++..++ ...|+|.+|++|| +||.++|||+|+|+|+|+++|+|
T Consensus 397 ~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~--~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~ 474 (599)
T 3cb4_D 397 YELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN--QVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKR 474 (599)
T ss_dssp EEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTT--EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEE
T ss_pred chhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCC--eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecC
Confidence 37999999999999999999999999999999999998655 5899999999999 89999999999999999999999
Q ss_pred eeec---------CCCCCCCC----------CchHHHHHHHH
Q psy16810 714 WQVL---------PGDPTDPG----------SKPYNVVQETR 736 (755)
Q Consensus 714 y~~v---------~~~~~~~~----------~~~~~~~~~~r 736 (755)
|+++ .+++.+.- ..+|+++.+.+
T Consensus 475 y~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 516 (599)
T 3cb4_D 475 FQASDMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMK 516 (599)
T ss_dssp EEECCEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred ceEecccccccccCCcEecccceeccHHHHHHHHHHHHHHHH
Confidence 9998 66555431 45677777655
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2.8e-61 Score=548.42 Aligned_cols=416 Identities=22% Similarity=0.316 Sum_probs=291.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc------ccCcccccCCchhhhhhccccccceEEEEeeeCcccccccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA------KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFIT 79 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 79 (755)
+++|||+|+||+|||||||+++|++.+|.+... .....+++|+.+.|+.||+|+.+....+.|.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~---------- 80 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH---------- 80 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET----------
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC----------
Confidence 468999999999999999999999988876421 1122457899999999999999999998884
Q ss_pred CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhc
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLE 159 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~ 159 (755)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.||+.+|+.+...++|+++|+||+|+...
T Consensus 81 ----------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~- 149 (529)
T 2h5e_A 81 ----------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR- 149 (529)
T ss_dssp ----------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS-
T ss_pred ----------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc-
Confidence 899999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred ccCCHHHHHHHHHHHhhhceeeEEEecCCC--CCCcce-------Eee-----------hhhhcc---------cHHHHH
Q psy16810 160 LQLDAEDLYQTFQRIVENVNVIIATYSDDS--GPMGEV-------RVF-----------DSIMNY---------KKEEAE 210 (755)
Q Consensus 160 ~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~--~~~~~~-------~l~-----------e~v~~~---------~~e~l~ 210 (755)
...+....+...+.. +.....|.... ...|-. ..| ..+.+. +++.++
T Consensus 150 ---~~~~~~~~i~~~l~~-~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~ 225 (529)
T 2h5e_A 150 ---DPMELLDEVENELKI-GCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQ 225 (529)
T ss_dssp ---CHHHHHHHHHHHHCC-EEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHH
T ss_pred ---cHHHHHHHHHHHhCC-CccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHH
Confidence 233444444443322 11111111000 000000 011 011111 122233
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCcccc
Q psy16810 211 SLLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAA 279 (755)
Q Consensus 211 ~lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 279 (755)
++++.. .+..++... .+.+.+. +.++|+ .+.|||++++++|+|.++....
T Consensus 226 ~~~e~~--~l~~~~~~~---~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~-------------- 286 (529)
T 2h5e_A 226 QLRDEL--ELVKGASNE---FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDT-------------- 286 (529)
T ss_dssp HHHHHH--HHHHHHSCC---CCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSS--------------
T ss_pred Hhhccc--chhhhhhhh---hhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccc--------------
Confidence 333321 111111000 0112222 345552 3789999999999997543210
Q ss_pred ccccccCC-CCCeEEEEEeeec---cCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCce
Q psy16810 280 IGIKNCDP-NAPLMMYVSKMVP---TSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYV 355 (755)
Q Consensus 280 ~~~~~~~~-~~pl~~~V~K~~~---~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~ 355 (755)
..+++ ++||+++|||+.. +++.|+ ++|+|||||+|++||.|++.+ .++++ +|++++.++|.++
T Consensus 287 ---~~~~~~~~~~~~~vfKi~~~~d~~~~G~-i~~~RV~sG~l~~g~~v~~~~----~~~~~-----~v~~i~~~~g~~~ 353 (529)
T 2h5e_A 287 ---RTVEASEDKFTGFVFKIQANMDPKHRDR-VAFMRVVSGKYEKGMKLRQVR----TAKDV-----VISDALTFMAGDR 353 (529)
T ss_dssp ---CEECTTCCSCEEEEEEECSSCCSSSSCC-CEEEEEEESCEETTCEEEETT----TTEEE-----ECSCEECCCC---
T ss_pred ---cccCCCCCCeEEEEEEEeeccCcCCCce-EEEEEEecCeEcCCCEEEEee----CCCEE-----EeceeeEEeCCCc
Confidence 01222 6899999999976 467898 999999999999999999643 35544 7999999999999
Q ss_pred eeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEE-
Q psy16810 356 EAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCI- 434 (755)
Q Consensus 356 ~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~- 434 (755)
+++++|.|||||++.|++++.+ |+||++.+ ...++++.++ +|+++++|+|.++.|.+||.+||++|++||| +++.
T Consensus 354 ~~v~~a~aGdiv~i~~l~~~~~-Gdtl~~~~-~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~ 429 (529)
T 2h5e_A 354 SHVEEAYPGDILGLHNHGTIQI-GDTFTQGE-MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFR 429 (529)
T ss_dssp --CCEECTTCEEEECCSSCCCT-TCEEESSC-CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEE
T ss_pred eEcceECCCCEEEEeccCCCcc-CCEeecCC-ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEE
Confidence 9999999999999999998643 67999866 4567777776 7999999999999999999999999999998 7775
Q ss_pred ECCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeecccc
Q psy16810 435 IEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEE 483 (755)
Q Consensus 435 ~~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~ 483 (755)
+++|||++|+|||||||||+++||+++| |+++.+++|+|+|||||...
T Consensus 430 ~~~t~~~il~~~Gelhlev~~~rl~~ey-~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 430 PISNNDLIVGAVGVLQFDVVVARLKSEY-NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp ETTSCCEEEEESSTHHHHHHHHHHHHHS-SCCEEEECCCCSEEEEEECS
T ss_pred eCCCCcEEEEEECHHHHHHHHHHHHHHh-CcEEEEecCceeEEEEEcCC
Confidence 7899999999999999999999999999 99999999999999999644
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.8e-61 Score=549.25 Aligned_cols=416 Identities=24% Similarity=0.287 Sum_probs=315.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc------ccCcccccCCchhhhhhccccccceEEEEeeeCcccccccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA------KAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFIT 79 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 79 (755)
+++|||+|+||+|+|||||+++|++.+|.+... ......++|+.+.|++||+|+.++...+.|.
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------- 80 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK---------- 80 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET----------
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC----------
Confidence 468999999999999999999999999988532 1112346899999999999999999999885
Q ss_pred CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhc
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLE 159 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~ 159 (755)
++.++|||||||.+|..++.++++.+|+||+|+|++.|++.||..+|+++...++|+++|+||+|+...
T Consensus 81 ----------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~- 149 (528)
T 3tr5_A 81 ----------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR- 149 (528)
T ss_dssp ----------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS-
T ss_pred ----------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc-
Confidence 899999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred ccCCHHHHHHHHHHHhhh---------------------ceeeEEEecCCCCCCcceEeehhhhcccHHHHHH-------
Q psy16810 160 LQLDAEDLYQTFQRIVEN---------------------VNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAES------- 211 (755)
Q Consensus 160 ~~~~~~~~~~~~~~ii~~---------------------v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~------- 211 (755)
...+....+...+.. +....+.|..+.+. .....+.+.+.++..+++
T Consensus 150 ---~~~~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~ 224 (528)
T 3tr5_A 150 ---PSIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHE--RVGESERIEGINNPELDKKLGDLAS 224 (528)
T ss_dssp ---CHHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSS--STTCSCEEECTTCHHHHHHHTHHHH
T ss_pred ---cHHHHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCC--cccccccccccchHHHHHHHHHHHH
Confidence 333333333333321 11111122111100 000001111222222222
Q ss_pred -HHHHhCCCCCccccccchHHHHHHHH-HhccCC----------hHHHHHHHHhcCCCCccccccchhhccCCCCCcccc
Q psy16810 212 -LLSKLGIELKPEDKEKDGKALLKVVM-RTWLPA----------GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAA 279 (755)
Q Consensus 212 -lle~~~~~l~~~~~~~~~~~l~~~~~-~~~~p~----------g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 279 (755)
+++.. .+..+.... ...+.+. +.++|+ .+.||+++++++|+|.+......
T Consensus 225 ~~~e~~--~l~~~~~~~---~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~------------- 286 (528)
T 3tr5_A 225 ELRNEI--ELVKGASHP---FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR------------- 286 (528)
T ss_dssp HHHHHH--HHHHHHSCC---CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSS-------------
T ss_pred HHhhhc--chhhhhhhH---HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccce-------------
Confidence 22211 000000000 0022222 445562 48999999999999975432110
Q ss_pred ccccccC-CCCCeEEEEEeeec--cC-CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCce
Q psy16810 280 IGIKNCD-PNAPLMMYVSKMVP--TS-DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYV 355 (755)
Q Consensus 280 ~~~~~~~-~~~pl~~~V~K~~~--~~-~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~ 355 (755)
.++ .++||+++|||+.. +| ++|+ ++|+|||||+|++||.|++ .++++++ ++++++.++|.++
T Consensus 287 ----~~~~~~~~~~~~VFKi~~~~dp~~~g~-l~~~RV~sG~l~~g~~v~~----~~~~~~~-----rv~~~~~~~~~~~ 352 (528)
T 3tr5_A 287 ----LVKPEEEKFSGFVFKIQANMDPGHRDR-IAFLRIASGQYQKGMKAYH----VRLKKEI-----QINNALTFMAGKR 352 (528)
T ss_dssp ----CBCTTSSSCEEEEEEEEECCC-CCCCE-EEEEEEEESCEETTEEEEE----TTTTEEE-----EESSCBCCBTTCS
T ss_pred ----eeCCCcccceeEEEEEecccCccCCce-EEEEEEecCeEcCCCEEEe----cCCCceE-----EEeeeEEEeCCCe
Confidence 112 36899999999985 77 8898 9999999999999999994 4456655 7999999999999
Q ss_pred eeeccccCCCeEEeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEE
Q psy16810 356 EAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCII 435 (755)
Q Consensus 356 ~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~ 435 (755)
+++++|.|||||++.|++++. .|+||++. ....++++.++ .|+++++|+|+++.|.+||.+||++|++|||+..+++
T Consensus 353 ~~v~~a~aGdI~~~~~l~~~~-~GDtl~~~-~~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~~~~~~ 429 (528)
T 3tr5_A 353 ENAEEAWPGDIIGLHNHGTIQ-IGDTFTQG-ERFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRP 429 (528)
T ss_dssp SCCSEECTTCEEEEEESSSCC-TTCEEESS-CCCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSCEEEEE
T ss_pred eECCEECCCCEEEEcCCCCCc-cCCEEcCC-CCcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCeEEEEc
Confidence 999999999999999998854 36699983 44566677665 7999999999999999999999999999999743358
Q ss_pred CCCCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeecccc
Q psy16810 436 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEE 483 (755)
Q Consensus 436 ~etge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~ 483 (755)
++|||++|+|||||||||+++||+++| |+++.+++|+|+|+|+|...
T Consensus 430 ~~~~~~il~~~G~lhlev~~~rL~~ey-~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 430 LDSNELILGAVGLLQFDVVAYRLENEY-NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp TTCCCEEEEESSTHHHHHHHHHHHHHH-CCCEEEECCSCCEEEEEECS
T ss_pred CCCCCEEEEEEcHHHHHHHHHHHHHHh-CcEEEEecCceEEEEEecCC
Confidence 999999999999999999999999999 99999999999999999753
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=6.1e-40 Score=342.43 Aligned_cols=199 Identities=21% Similarity=0.339 Sum_probs=160.0
Q ss_pred EeccccceeeecceeecCCCccccccccccCCceEEEEEeeCCC----CC-----hhhHHHHHHHhHhcCCceEEE-ECC
Q psy16810 368 GLVGVDQFLVKTGTITTFKDAHNLRVMKFSVSPVVRVAVEPKNP----AD-----LPKLVEGLKRLSKSDPMVQCI-IEE 437 (755)
Q Consensus 368 ai~gl~~~~~~~gTl~~~~~~~~~~~~~~~~~Pv~~~~IeP~~~----~d-----~~kL~~aL~~L~~eDPsl~v~-~~e 437 (755)
|++||+++. .|+|||+...+..++++.++ +|+++++|+|.+. .| ..+|.++|++|+++||+|++. +++
T Consensus 2 av~Gl~~~~-iGDTl~~~~~p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~ 79 (332)
T 3e3x_A 2 NATGLGELK-ISDTICAQNAVEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDD 79 (332)
T ss_dssp ----------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CccCCCCCc-cCCEEcCCCCcccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCC
Confidence 567888754 36799998877778888886 8999999999987 65 679999999999999999997 578
Q ss_pred CCceEEEeechhHHHHHHHHHHhhccceeeEeeCcEEEEEeeccccccceeeeecCCceeEEEEEEEeCCCCCccccccC
Q psy16810 438 SGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKG 517 (755)
Q Consensus 438 tge~il~g~GElHLei~~~rL~~~f~~vev~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~v~l~~~Pl~~~~~~~i~~~ 517 (755)
++|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 80 t~~~~v~G~GELHLeIl~ErLrrE--g~ev~v~~P~V~YrEt------~------------------------------- 120 (332)
T 3e3x_A 80 PDKFRVSGRGELHLSILIENMRRE--GFELAVSRPEVIIXEE------D------------------------------- 120 (332)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHH--TBCEEECCCEECCEEE------T-------------------------------
T ss_pred CCeEEEEeeCHHHHHHHHHHHHhc--CceEEEeCCEEEEEEE------C-------------------------------
Confidence 999999999999999999999999 8999999999999997 1
Q ss_pred CCCCCchhhhhhhhhhhcccccccccceEEEeCcCCCCCceeeeccCCccchHHHHHHHHHHHHHHHHcCCccCCCeeeE
Q psy16810 518 EVNPRDDFKIRGRYLADKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEENLRGV 597 (755)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gp~~~~~~~l~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v 597 (755)
|
T Consensus 121 -----------------------------------------------G-------------------------------- 121 (332)
T 3e3x_A 121 -----------------------------------------------G-------------------------------- 121 (332)
T ss_dssp -----------------------------------------------T--------------------------------
T ss_pred -----------------------------------------------C--------------------------------
Confidence 1
Q ss_pred EEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCc
Q psy16810 598 RFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTP 677 (755)
Q Consensus 598 ~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~ 677 (755)
+||||||+++|.||++++|+|+++|++|||+|.+++..++.
T Consensus 122 --------------------------------------~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g- 162 (332)
T 3e3x_A 122 --------------------------------------QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKG- 162 (332)
T ss_dssp --------------------------------------EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSS-
T ss_pred --------------------------------------EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECCCC-
Confidence 78999999999999999999999999999999999986433
Q ss_pred cEEEEEEecchhhcCchHHHhhhcCCcceeEeEecceeec-CCCCCCCC
Q psy16810 678 MFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL-PGDPTDPG 725 (755)
Q Consensus 678 ~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~~f~~y~~v-~~~~~~~~ 725 (755)
.+.|+|.+|++||+||.++|||+|+|+|+|++.|+||+++ |++.....
T Consensus 163 ~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~r~ 211 (332)
T 3e3x_A 163 RVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQRV 211 (332)
T ss_dssp EEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSCCC
T ss_pred eEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCcccccc
Confidence 5789999999999999999999999999999999999999 89987764
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.98 E-value=1.5e-31 Score=298.58 Aligned_cols=288 Identities=19% Similarity=0.278 Sum_probs=200.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccc----------cCc-----ccccCCchhhhhhccccccceEEEEee
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAK----------AGE-----TRFTDTRKDEQERCITIKSTAISMYFE 69 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 69 (755)
.+..+||+++||+|+|||||+++|++.+|.+.... .|+ ..++|..++|++||+|+..+...+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35679999999999999999999999999887532 121 236899999999999999888777664
Q ss_pred eCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-------ehHHHHHHHHHHc
Q psy16810 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIAE 142 (755)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-------~qt~~~~~~~~~~ 142 (755)
++.++|||||||.+|...+..+++.+|++|+|||+.+|+. +||++++..+...
T Consensus 94 --------------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~ 153 (439)
T 3j2k_7 94 --------------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA 153 (439)
T ss_pred --------------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999986 7999999999999
Q ss_pred CCc-eEEEEeccchhhhccc-CCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCC
Q psy16810 143 RIK-PVLFMNKMDRALLELQ-LDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIEL 220 (755)
Q Consensus 143 ~ip-~iv~iNKiD~~~~~~~-~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l 220 (755)
++| +|+++||||+...++. ...+++...+...+..+... .. .++.++ .++....+.++.+++.
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~-----~~----~~~~~i-~iSA~~G~ni~~l~~~----- 218 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN-----PK----KDIHFM-PCSGLTGANLKEQSDF----- 218 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhccc-----cc----CCeeEE-EeeccCCccccccccc-----
Confidence 999 7899999998642210 01122223333333222110 00 000000 0111111111111111
Q ss_pred CccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeec
Q psy16810 221 KPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVP 300 (755)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~ 300 (755)
..|+- +..|++.+. .+|+|. .+.++|+++.|..++.
T Consensus 219 -----------------~~w~~-g~~L~~~l~-~i~~~~-------------------------~~~~~p~r~~v~~~~~ 254 (439)
T 3j2k_7 219 -----------------CPWYI-GLPFIPYLD-NLPNFN-------------------------RSVDGPIRLPIVDKYK 254 (439)
T ss_pred -----------------ccccC-chHHHHHHH-hCCCCc-------------------------cCCCCCeEEEEEEEEc
Confidence 12332 356777554 466652 2347899999999875
Q ss_pred cCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEE--eccccceeee
Q psy16810 301 TSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICG--LVGVDQFLVK 378 (755)
Q Consensus 301 ~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIva--i~gl~~~~~~ 378 (755)
+.|+ ++.|||.+|+|++||.|.+.+.+ ... +|..+.. ...++++|.|||+|+ +.|++...++
T Consensus 255 --~~G~-v~~G~v~~G~l~~Gd~v~~~p~~----~~~-----~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~ 318 (439)
T 3j2k_7 255 --DMGT-VVLGKLESGSIFKGQQLVMMPNK----HNV-----EVLGILS----DDTETDFVAPGENLKIRLKGIEEEEIL 318 (439)
T ss_pred --CCCe-EEEEEEEeeEEecCCEEEEccCC----ceE-----EEEEEEE----CCeEcCEecCCCcceEEEeccchhhcC
Confidence 4687 89999999999999999987652 221 5666643 347899999999998 5677654454
Q ss_pred cc-eeecCCC
Q psy16810 379 TG-TITTFKD 387 (755)
Q Consensus 379 ~g-Tl~~~~~ 387 (755)
.| ++++++.
T Consensus 319 rG~vl~~~~~ 328 (439)
T 3j2k_7 319 PGFILCDPSN 328 (439)
T ss_pred CcEEecCCCC
Confidence 44 7776543
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.97 E-value=3.1e-31 Score=293.92 Aligned_cols=295 Identities=24% Similarity=0.318 Sum_probs=198.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccc-cccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG-AKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
.+..+||+++||+|+|||||+++|+........ ........+|..++|+++|+|+......+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--------------- 72 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--------------- 72 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC---------------
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc---------------
Confidence 456789999999999999999999874211000 0000123579999999999999987666554
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchhhhcccC
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRALLELQL 162 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~~~~~~~ 162 (755)
+++.++|||||||.+|..++.++++.+|++|+|+|+.+|.+.||+++|..+...++| +++++||+|+...+ .
T Consensus 73 -----~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~--~ 145 (405)
T 2c78_A 73 -----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP--E 145 (405)
T ss_dssp -----SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH--H
T ss_pred -----CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH--H
Confidence 368999999999999999999999999999999999999999999999999999999 68999999986300 0
Q ss_pred CHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC
Q psy16810 163 DAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP 242 (755)
Q Consensus 163 ~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p 242 (755)
..+.....+...+...+. ... .+.++. ++....+ .+.+.. ...... ...|+.
T Consensus 146 ~~~~~~~~~~~~l~~~~~-----~~~-----~~~~i~-~SA~~g~---~v~~~~-~~~~~~-------------~~~~~~ 197 (405)
T 2c78_A 146 LLDLVEMEVRDLLNQYEF-----PGD-----EVPVIR-GSALLAL---EQMHRN-PKTRRG-------------ENEWVD 197 (405)
T ss_dssp HHHHHHHHHHHHHHHTTS-----CTT-----TSCEEE-CCHHHHH---HHHHHC-TTCCTT-------------SCHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----ccc-----CCCEEE-ccHHHhh---hhhccc-cccccC-------------CCcccc
Confidence 001112223333322210 000 000000 1111111 111110 000000 012332
Q ss_pred ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCC
Q psy16810 243 AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQ 322 (755)
Q Consensus 243 ~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~ 322 (755)
....|++++.+++|.|. .+.++|++++|++++.+++.|. +++|||++|+|++||
T Consensus 198 ~i~~Ll~~l~~~lp~p~-------------------------~~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd 251 (405)
T 2c78_A 198 KIWELLDAIDEYIPTPV-------------------------RDVDKPFLMPVEDVFTITGRGT-VATGRIERGKVKVGD 251 (405)
T ss_dssp HHHHHHHHHHHHSCCCC-------------------------CCCSSCCEEECCEEEEETTTEE-EEEEECCBSEEETTC
T ss_pred cHHHHHHHHHhhcCCCC-------------------------CCCCCCcEEEEEEEEEcCCCce-EEEEEEecccccCCC
Confidence 24689999999999873 1346899999999999999998 899999999999999
Q ss_pred eEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cc--cceeeecceeecCC
Q psy16810 323 KARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GV--DQFLVKTGTITTFK 386 (755)
Q Consensus 323 ~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~~~gTl~~~~ 386 (755)
.|++.+.+... .. .+|..+.. + ..++++|.|||+|++. |+ ++. .+|++|+++.
T Consensus 252 ~v~~~~~~~~~-~~-----~~V~~i~~-~---~~~~~~a~aG~~v~~~l~g~~~~~i-~~G~~l~~~~ 308 (405)
T 2c78_A 252 EVEIVGLAPET-RK-----TVVTGVEM-H---RKTLQEGIAGDNVGVLLRGVSREEV-ERGQVLAKPG 308 (405)
T ss_dssp EEEEESSSSSC-EE-----EEEEEEEE-T---TEEESEEETTCEEEEEESSCCTTTC-CTTCEEESTT
T ss_pred EEEEeCCCCCe-ee-----EEEEEEEE-C---CcccCEEcCCCEEEEEECCCcHhhc-CceEEEEcCC
Confidence 99987642100 11 25677643 2 3789999999999875 55 342 2355888754
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=4.8e-31 Score=291.42 Aligned_cols=281 Identities=20% Similarity=0.279 Sum_probs=193.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...||+++||+|||||||+++|+................+|..++|+++|+|+..+...+.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------------ 63 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST------------------ 63 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC------------------
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc------------------
Confidence 45799999999999999999998753211000000122478888999999999986655544
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchhhhcccCCHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~~~~~~~~~~ 165 (755)
+++.++|||||||.+|..++.++++.+|++|+|||+++|.+.||+++|..+...++| +++++||+|+.. +.+
T Consensus 64 --~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-----~~~ 136 (397)
T 1d2e_A 64 --AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-----DSE 136 (397)
T ss_dssp --SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-----CHH
T ss_pred --CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-----CHH
Confidence 368999999999999999999999999999999999999999999999999999999 479999999863 111
Q ss_pred ---HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccC
Q psy16810 166 ---DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLP 242 (755)
Q Consensus 166 ---~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p 242 (755)
.....+...+...+. ..+. +.++. ++.. ...+.. ...|..
T Consensus 137 ~~~~~~~~~~~~l~~~~~-----~~~~-----~~~i~-~SA~---------~g~n~~-----------------~~~~~~ 179 (397)
T 1d2e_A 137 MVELVELEIRELLTEFGY-----KGEE-----TPIIV-GSAL---------CALEQR-----------------DPELGL 179 (397)
T ss_dssp HHHHHHHHHHHHHHHTTS-----CTTT-----SCEEE-CCHH---------HHHTTC-----------------CTTTTH
T ss_pred HHHHHHHHHHHHHHHcCC-----Cccc-----CcEEE-eehh---------hccccc-----------------CCCccC
Confidence 111122222221110 0000 00000 0000 000000 001222
Q ss_pred C-hHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCC
Q psy16810 243 A-GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATG 321 (755)
Q Consensus 243 ~-g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g 321 (755)
. ...|++++.+++|.|. .+.++|+.++|++++.+++.|. +++|||++|+|++|
T Consensus 180 g~i~~Ll~~l~~~~p~p~-------------------------~~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~g 233 (397)
T 1d2e_A 180 KSVQKLLDAVDTYIPVPT-------------------------RDLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKG 233 (397)
T ss_dssp HHHHHHHHHHHHHSCCCC-------------------------CCTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETT
T ss_pred CcHHHHHHHHHHhCCCCC-------------------------CCCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCC
Confidence 2 3679999999999883 2346899999999999999998 89999999999999
Q ss_pred CeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cccceee-ecceeecCC
Q psy16810 322 QKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GVDQFLV-KTGTITTFK 386 (755)
Q Consensus 322 ~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~-~~gTl~~~~ 386 (755)
|.|++++.+. +.. .+|..+... ..++++|.|||+|++. |++...+ +|++|++.+
T Consensus 234 d~v~~~~~~~--~~~-----~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 234 DECEFLGHSK--NIR-----TVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp CEEEEEETTE--EEE-----EEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred CEEEEeCCCC--CeE-----EEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 9999876420 111 256666432 2689999999998875 6532223 345887654
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.97 E-value=1.2e-30 Score=291.66 Aligned_cols=286 Identities=25% Similarity=0.373 Sum_probs=188.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCcc-----cccCCchhhhhhccccccceEEEEeee
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGET-----RFTDTRKDEQERCITIKSTAISMYFEL 70 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~~-----~~~d~~~~E~~rgiTi~~~~~~~~~~~ 70 (755)
+..+||+++||+|+|||||+++|++.+|.+... ..|+. .++|+.++|++||+|+..+...+.|.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 568999999999999999999999987766532 11221 35899999999999999887776663
Q ss_pred CccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-------ceehHHHHHHHHHHcC
Q psy16810 71 DDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-------VCVQTETVLRQAIAER 143 (755)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~ 143 (755)
++.++|||||||.+|..++.++++.+|++|+|+|+++| +..||++++..+...+
T Consensus 83 -------------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~ 143 (435)
T 1jny_A 83 -------------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG 143 (435)
T ss_dssp -------------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred -------------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999 8889999999999999
Q ss_pred Cc-eEEEEeccchhhhccc-CCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCC
Q psy16810 144 IK-PVLFMNKMDRALLELQ-LDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELK 221 (755)
Q Consensus 144 ip-~iv~iNKiD~~~~~~~-~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~ 221 (755)
+| +|+++||+|+...++. ...+.....+...+...+.. .. .+.++. ++... |..+.
T Consensus 144 ~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~-----~~~~i~-iSA~~-----------g~~v~ 201 (435)
T 1jny_A 144 LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN-----TN-----KVRFVP-VVAPS-----------GDNIT 201 (435)
T ss_dssp CTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCC-----CT-----TCEEEE-CBTTT-----------TBTTT
T ss_pred CCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCC-----cC-----CceEEE-eeccc-----------Ccccc
Confidence 85 7899999999652210 00122233333333332210 00 000000 00000 11110
Q ss_pred ccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeecc
Q psy16810 222 PEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPT 301 (755)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~ 301 (755)
.. .. ...|+- +..|++++.. +|+|.. +.++|+.+.|..++..
T Consensus 202 e~--~~---------~~~~~~-g~~Ll~~l~~-~~~p~~-------------------------~~~~~~~~~v~~v~~~ 243 (435)
T 1jny_A 202 HK--SE---------NMKWYN-GPTLEEYLDQ-LELPPK-------------------------PVDKPLRIPIQDVYSI 243 (435)
T ss_dssp BC--CS---------SCTTCC-SCCHHHHHTT-CCCCCC-------------------------GGGSCCBEEEEEEEEE
T ss_pred cc--cc---------cccccc-chhHHHHHhc-cCCCCC-------------------------CCCCCeEEEEEEEEEe
Confidence 00 00 002331 2468998755 455521 1246888888888888
Q ss_pred CCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cc--cceee
Q psy16810 302 SDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GV--DQFLV 377 (755)
Q Consensus 302 ~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~ 377 (755)
++.|+ +++|||++|+|++||.|++.+. +... +|.++... ..++++|.|||+|++. |+ ++. .
T Consensus 244 ~~~G~-v~~g~v~~G~l~~gd~v~~~p~----~~~~-----~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i-~ 308 (435)
T 1jny_A 244 SGVGT-VPVGRVESGVLKVGDKIVFMPA----GKVG-----EVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDI-K 308 (435)
T ss_dssp TTTEE-EEEEECCBSCEETTCEEEEETT----TEEE-----EEEEEEET----TEEESEECTTCEEEEEEESSCGGGC-C
T ss_pred CCCcE-EEEEEEecCeEEcCCEEEECCc----eeEE-----EEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHc-C
Confidence 89998 8999999999999999998753 3332 67777542 3789999999999984 44 443 2
Q ss_pred ecceeecCC
Q psy16810 378 KTGTITTFK 386 (755)
Q Consensus 378 ~~gTl~~~~ 386 (755)
+|++|++..
T Consensus 309 ~Gd~l~~~~ 317 (435)
T 1jny_A 309 RGDVVGHPN 317 (435)
T ss_dssp TTCEEECTT
T ss_pred CccEecCCC
Confidence 355888764
No 18
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=4.7e-30 Score=294.67 Aligned_cols=344 Identities=18% Similarity=0.194 Sum_probs=216.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+.++|+|+||+|||||||+++|+... +.++. .+|+|...+...+.|........... .....
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~------------v~~~e----~ggiT~~ig~~~~~~~~~~~~~~~~~--~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA------------VASRE----AGGITQHIGATEIPMDVIEGICGDFL--KKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH------------HSCC--------CCCBTTEEEEEHHHHHHHSCGGG--GGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc------------Ccccc----CCceecccCeEEEeechhhhhccccc--ccccc
Confidence 56799999999999999999997542 11211 25677766655555531000000000 00000
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAED 166 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~ 166 (755)
+.....++|||||||.+|..++.++++.+|+||+|+|+++|+++||.++|+++...++|+++|+||+|+....-......
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~ 145 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRP 145 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCc
Confidence 01234699999999999999999999999999999999999999999999999999999999999999964100000000
Q ss_pred HHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHH-HHhccC---
Q psy16810 167 LYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVV-MRTWLP--- 242 (755)
Q Consensus 167 ~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~-~~~~~p--- 242 (755)
+...+..-.+.+ .+.+.+.-.+..+.+.+. + +..+.... +.... .-.++|
T Consensus 146 ~~e~sa~~~~~v-------------------~~~~~e~i~ei~~~L~e~-g--l~~e~~~~----l~~~~~~vpvv~vSA 199 (594)
T 1g7s_A 146 FMETFSKQDIQV-------------------QQKLDTKVYELVGKLHEE-G--FESERFDR----VTDFASQVSIIPISA 199 (594)
T ss_dssp HHHHHTTSCHHH-------------------HHHHHHHHHHHHHHHHHT-T--CEEEEGGG----CSCTTTEEEEEECCT
T ss_pred hHHHHHHhHHHH-------------------HHHHHHHHHHHHHHHHHc-C--cchHHHHH----HHhccCcceEEEEec
Confidence 000000000000 000000000111222221 1 11111000 00000 001222
Q ss_pred ----ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEe
Q psy16810 243 ----AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKV 318 (755)
Q Consensus 243 ----~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL 318 (755)
+...||+++..++|+|.+. ...+++++|+.++||+++.+++.|. ++++||++|+|
T Consensus 200 ~tG~GI~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~G~-v~~~rV~~G~L 258 (594)
T 1g7s_A 200 ITGEGIPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGLGM-TIDAVIYDGIL 258 (594)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTEEE-EEEEEEEESEE
T ss_pred cCCCCchhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCcEE-EEEEEEeeCEE
Confidence 2378999999888765421 0124568899999999999999998 89999999999
Q ss_pred cCCCeEEEccCCCCCCCcccccccccceEEEec--------cCceeeecccc--CCCeEEeccccceeeecceeecCCCc
Q psy16810 319 ATGQKARIMGPNYIPGKKEDLYEKAIQRTILMM--------GRYVEAIEDVP--SGNICGLVGVDQFLVKTGTITTFKDA 388 (755)
Q Consensus 319 ~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~--------g~~~~~v~~a~--AGdIvai~gl~~~~~~~gTl~~~~~~ 388 (755)
++||.|++.+. +..+ ..+|..++.+. +....++++|. ||+++++.||++.. .|+||+...+.
T Consensus 259 k~Gd~v~~~~~----~~~~---~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~-~Gd~l~~~~~~ 330 (594)
T 1g7s_A 259 RKDDTIAMMTS----KDVI---STRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVM-AGSPLRVVTDP 330 (594)
T ss_dssp ETTCEEEEEBS----SSEE---EEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBC-TTCEEEECSSH
T ss_pred eeCCEEEECCC----CCce---eEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCCC-CCCEEEecCCH
Confidence 99999997643 2221 23688888762 66788999998 99999999998863 46688876543
Q ss_pred c--------ccccccccCCceEEEEEeeCCCCChhhHHHHHHHh
Q psy16810 389 H--------NLRVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRL 424 (755)
Q Consensus 389 ~--------~~~~~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L 424 (755)
. .+..+... .+.+.+.|.+...+..+.|.++|.++
T Consensus 331 ~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 331 EKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp HHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 1 11222222 45677788888888888898888887
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.8e-30 Score=297.65 Aligned_cols=285 Identities=21% Similarity=0.290 Sum_probs=165.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-----ccccCCchhhhhhccccccceEEEEee
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-----TRFTDTRKDEQERCITIKSTAISMYFE 69 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 69 (755)
.+.++||+|+||+|+|||||+++|++.++.+... ..|+ ..++|..++|+++|+|+......+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4568999999999999999999999988877643 1222 346899999999999999888777664
Q ss_pred eCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-------eehHHHHHHHHHHc
Q psy16810 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-------CVQTETVLRQAIAE 142 (755)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~ 142 (755)
++.++|||||||.+|...+..+++.+|+||+|||+.+|. ..||.+++..+...
T Consensus 254 --------------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l 313 (592)
T 3mca_A 254 --------------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL 313 (592)
T ss_dssp -------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS
T ss_pred --------------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc
Confidence 689999999999999999999999999999999999864 89999999999999
Q ss_pred CCc-eEEEEeccchhhhcccCCHHH---HHHHHHHHh-hhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhC
Q psy16810 143 RIK-PVLFMNKMDRALLELQLDAED---LYQTFQRIV-ENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLG 217 (755)
Q Consensus 143 ~ip-~iv~iNKiD~~~~~~~~~~~~---~~~~~~~ii-~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~ 217 (755)
++| +|+|+||||+.. .+.+. +...+...+ ...... ...+.++. ++ ...|
T Consensus 314 gip~iIvviNKiDl~~----~~~~~~~~i~~el~~~l~~~~g~~----------~~~~~ii~-iS-----------A~~G 367 (592)
T 3mca_A 314 GISEIVVSVNKLDLMS----WSEDRFQEIKNIVSDFLIKMVGFK----------TSNVHFVP-IS-----------AISG 367 (592)
T ss_dssp SCCCEEEEEECGGGGT----TCHHHHHHHHHHHHHHHTTTSCCC----------GGGEEEEE-EC-----------SSSC
T ss_pred CCCeEEEEEecccccc----ccHHHHHHHHHHHHHHHHHhhCCC----------ccceEEEE-Ee-----------cccC
Confidence 998 788999999864 12222 222333332 211110 00000000 00 0111
Q ss_pred CCCCccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEe
Q psy16810 218 IELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSK 297 (755)
Q Consensus 218 ~~l~~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K 297 (755)
..+...... ....|+- +..|++++..++|++ .+.++||.+.|..
T Consensus 368 ~gI~e~~~~---------~~~~w~~-g~~Lle~l~~~~pp~--------------------------~~~~~p~r~~v~~ 411 (592)
T 3mca_A 368 TNLIQKDSS---------DLYKWYK-GPTLLSALDQLVPPE--------------------------KPYRKPLRLSIDD 411 (592)
T ss_dssp SSSCSCCCC---------GGGGTCC-SCCHHHHHHTSCCCS--------------------------CTTTSCCEEEEEE
T ss_pred ccccccccc---------ccccccc-hHHHHHHHHhhcccc--------------------------ccccccchheeeE
Confidence 222110000 0123442 357999998888732 2346899999999
Q ss_pred eeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeec-cccCCCeEEe--ccccc
Q psy16810 298 MVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIE-DVPSGNICGL--VGVDQ 374 (755)
Q Consensus 298 ~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~-~a~AGdIvai--~gl~~ 374 (755)
++.. +.|. +++|||.+|+|++||.|.+++.+ .. .+|..|.. ...+++ +|.|||+|++ .|++.
T Consensus 412 v~~~-~~g~-v~~G~v~~G~l~~Gd~v~i~p~~----~~-----~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~ 476 (592)
T 3mca_A 412 VYRS-PRSV-TVTGRVEAGNVQVNQVLYDVSSQ----ED-----AYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEV 476 (592)
T ss_dssp EEEE-TTEE-EEEEEEEESEEETTCEEEETTTT----EE-----EEEEEEEC----SSSCSCCEEETTCEEEEEESSSCG
T ss_pred EEec-CCeE-EEEEEEeeeeEccCCEEEEccCC----ce-----EEEEEEEE----cCccCcceecCCCEEEEEEccccc
Confidence 9998 7887 88999999999999999987642 22 15666653 236799 9999999985 57654
Q ss_pred eeee-cceeecCC
Q psy16810 375 FLVK-TGTITTFK 386 (755)
Q Consensus 375 ~~~~-~gTl~~~~ 386 (755)
..++ |++|++..
T Consensus 477 ~~i~rG~vl~~~~ 489 (592)
T 3mca_A 477 NQLRPGDILSNYE 489 (592)
T ss_dssp GGCCTTCEEECSS
T ss_pred cccceEEEeccCC
Confidence 3344 44888754
No 20
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.96 E-value=3.1e-29 Score=281.46 Aligned_cols=288 Identities=25% Similarity=0.340 Sum_probs=198.0
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCcc-----cccCCchhhhhhccccccceEEE
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGET-----RFTDTRKDEQERCITIKSTAISM 66 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~~-----~~~d~~~~E~~rgiTi~~~~~~~ 66 (755)
|.+.+...||+++||+|+|||||+++|++.+|.++.. +.|.. .++|..++|+++|+|+......+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 4455678999999999999999999999987765421 12221 24688899999999999988776
Q ss_pred EeeeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee-------hHHHHHHHH
Q psy16810 67 YFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-------QTETVLRQA 139 (755)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~-------qt~~~~~~~ 139 (755)
.+. ++.++|||||||.+|..++.++++.+|++|+|||+.+|... ||.+++..+
T Consensus 81 ~~~--------------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~ 140 (458)
T 1f60_A 81 ETP--------------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA 140 (458)
T ss_dssp ECS--------------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH
T ss_pred ecC--------------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH
Confidence 653 78999999999999999999999999999999999999866 999999999
Q ss_pred HHcCCc-eEEEEeccchhhhcccCCHH---HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHH
Q psy16810 140 IAERIK-PVLFMNKMDRALLELQLDAE---DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSK 215 (755)
Q Consensus 140 ~~~~ip-~iv~iNKiD~~~~~~~~~~~---~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~ 215 (755)
...++| +|+++||+|+.. .+.+ ++...+...+...+... + ++.++. ++..
T Consensus 141 ~~~~v~~iivviNK~Dl~~----~~~~~~~~i~~~~~~~l~~~g~~~-----~-----~~~~i~-vSA~----------- 194 (458)
T 1f60_A 141 FTLGVRQLIVAVNKMDSVK----WDESRFQEIVKETSNFIKKVGYNP-----K-----TVPFVP-ISGW----------- 194 (458)
T ss_dssp HHTTCCEEEEEEECGGGGT----TCHHHHHHHHHHHHHHHHHHTCCG-----G-----GCCEEE-CCTT-----------
T ss_pred HHcCCCeEEEEEEcccccc----CCHHHHHHHHHHHHHHHHHcCCCc-----c-----CceEEE-eecc-----------
Confidence 999997 788999999963 1222 22233333333221100 0 000000 0000
Q ss_pred hCCCCCccccccchHHHHHHHHHhccC-------C----hHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccc
Q psy16810 216 LGIELKPEDKEKDGKALLKVVMRTWLP-------A----GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKN 284 (755)
Q Consensus 216 ~~~~l~~~~~~~~~~~l~~~~~~~~~p-------~----g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (755)
.|..+... .. ...|+- . +..|++++.. +|+|.
T Consensus 195 ~g~nv~~~--~~---------~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~------------------------- 237 (458)
T 1f60_A 195 NGDNMIEA--TT---------NAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPS------------------------- 237 (458)
T ss_dssp TCBTTTBC--CS---------SCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCC-------------------------
T ss_pred cCcCcccc--cc---------cCchhhcccccccccccchHHHHHHhhc-cCCCc-------------------------
Confidence 01111000 00 001221 1 2468888654 55552
Q ss_pred cCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCC
Q psy16810 285 CDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSG 364 (755)
Q Consensus 285 ~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AG 364 (755)
.+.++|++++|..++..++.|. +++|||.+|+++.||.|.+.+. +.. .+|.++... ..++++|.||
T Consensus 238 ~~~~~p~r~~i~~v~~~~g~G~-v~~G~v~~G~l~~gd~v~~~p~----~~~-----~~V~~i~~~----~~~~~~a~aG 303 (458)
T 1f60_A 238 RPTDKPLRLPLQDVYKIGGIGT-VPVGRVETGVIKPGMVVTFAPA----GVT-----TEVKSVEMH----HEQLEQGVPG 303 (458)
T ss_dssp CCTTSCCEEEEEEEEEETTTEE-EEEEECCBSCBCTTCEEEEETT----TEE-----EEEEEEEET----TEECSCBCTT
T ss_pred ccCCCCcEEEEEEEEEeCCCcE-EEEEEEeCCeEcCCCEEEECCC----Cce-----EEEeEEEEC----CeEEEEEcCC
Confidence 2346899999999999999998 8999999999999999998764 222 156666532 3689999999
Q ss_pred CeEEec--cccceee-ecceeecCC
Q psy16810 365 NICGLV--GVDQFLV-KTGTITTFK 386 (755)
Q Consensus 365 dIvai~--gl~~~~~-~~gTl~~~~ 386 (755)
|++++. |++...+ +|++|+..+
T Consensus 304 ~~v~i~l~gi~~~~i~rG~vl~~~~ 328 (458)
T 1f60_A 304 DNVGFNVKNVSVKEIRRGNVCGDAK 328 (458)
T ss_dssp CEEEEEESSCCTTTSCTTCEEEETT
T ss_pred CEEEEEEcCCcccccCceeEEecCC
Confidence 998874 6532123 345777654
No 21
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=5.4e-30 Score=288.34 Aligned_cols=284 Identities=21% Similarity=0.296 Sum_probs=165.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-----ccccCCchhhhhhccccccceEEEEeee
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-----TRFTDTRKDEQERCITIKSTAISMYFEL 70 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 70 (755)
+..+||+++||+|||||||+++|++.+|.+... ..|+ ...+|..++|++||+||..+...+.+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 457899999999999999999999998877531 1232 235899999999999999887766663
Q ss_pred CccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-------ehHHHHHHHHHHcC
Q psy16810 71 DDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIAER 143 (755)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-------~qt~~~~~~~~~~~ 143 (755)
++.++|||||||.+|..++.++++.+|++|+|||+.+|+. .||++++..+...+
T Consensus 120 -------------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~ 180 (467)
T 1r5b_A 120 -------------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG 180 (467)
T ss_dssp -------------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred -------------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcC
Confidence 7899999999999999999999999999999999999973 89999999999999
Q ss_pred Cc-eEEEEeccchhhhcccC-CHHHHHHHHHHHhhhc-eee----EEEecCCCCCCcceEeehhhhcccHHHHHHHHHHh
Q psy16810 144 IK-PVLFMNKMDRALLELQL-DAEDLYQTFQRIVENV-NVI----IATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKL 216 (755)
Q Consensus 144 ip-~iv~iNKiD~~~~~~~~-~~~~~~~~~~~ii~~v-~~~----~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~ 216 (755)
+| +|+++||||+...++.. ..+.....+...+... ... ...+. ++...
T Consensus 181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~--------------vSA~~----------- 235 (467)
T 1r5b_A 181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP--------------VSAYT----------- 235 (467)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEE--------------CBTTT-----------
T ss_pred CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEe--------------ccccc-----------
Confidence 98 88999999996432110 0112222233333222 100 00000 00000
Q ss_pred CCCCCccccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEE
Q psy16810 217 GIELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVS 296 (755)
Q Consensus 217 ~~~l~~~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~ 296 (755)
|..+.. .. +. ....|+. |..|++.+. .+|.|.. +.++||++.|.
T Consensus 236 g~~i~~--l~-~~------~~~~w~~-g~~L~~~l~-~i~~~~~-------------------------~~~~p~~~~v~ 279 (467)
T 1r5b_A 236 GQNVKD--RV-DS------SVCPWYQ-GPSLLEYLD-SMTHLER-------------------------KVNAPFIMPIA 279 (467)
T ss_dssp TBTTSS--CC-CT------TTCSSCC-SCCHHHHHH-HCCCCHH-------------------------HHTSCCEEECC
T ss_pred cccccc--cc-cc------ccCcccc-chhHHHHHH-hCCCCcC-------------------------CCCCCcEEEEE
Confidence 111100 00 00 0013443 245776664 4776631 23678999999
Q ss_pred eeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEe--cc-cc
Q psy16810 297 KMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGL--VG-VD 373 (755)
Q Consensus 297 K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai--~g-l~ 373 (755)
.++.+ .|. +++|||.+|+|++||.|.+.+. +.. .+|..++.. ...++++|.|||+|++ .| .+
T Consensus 280 ~~~~~--~G~-v~~G~v~~G~l~~gd~v~~~p~----~~~-----~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~ 344 (467)
T 1r5b_A 280 SKYKD--LGT-ILEGKIEAGSIKKNSNVLVMPI----NQT-----LEVTAIYDE---ADEEISSSICGDQVRLRVRGDDS 344 (467)
T ss_dssp EEEES--SSE-EEEEECCBSEEETTEEEEEETT----TEE-----EEEEEEECT---TCCEESEEETTCEEEEEEESCCT
T ss_pred EEEeC--CCe-EEEEEEeeeEEeeCCEEEEccC----Cee-----EEEEEEecc---CCcEeeEEcCCCEEEEEEeccHh
Confidence 98764 687 8999999999999999998764 222 156666432 2478999999999988 45 33
Q ss_pred ceeeecceeecCC
Q psy16810 374 QFLVKTGTITTFK 386 (755)
Q Consensus 374 ~~~~~~gTl~~~~ 386 (755)
+. .+|++|++.+
T Consensus 345 ~i-~rG~vl~~~~ 356 (467)
T 1r5b_A 345 DV-QTGYVLTSTK 356 (467)
T ss_dssp TC-CTTCEEECSS
T ss_pred hC-CceEEEeCCC
Confidence 42 2355777654
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.96 E-value=6e-29 Score=295.14 Aligned_cols=285 Identities=21% Similarity=0.317 Sum_probs=180.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+..+||+++||+|+|||||+++|+...........-....+|..++|+++|+|+..+.+.+.+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~---------------- 356 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT---------------- 356 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC----------------
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC----------------
Confidence 3567899999999999999999998742110000000112578889999999999987766654
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchhhhcccCC
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRALLELQLD 163 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~~~~~~~~ 163 (755)
+++.++|||||||.+|..++.++++.+|++|+|||+++|++.||+++|..+...++| +|+++||||+...+ ..
T Consensus 357 ----~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~--e~ 430 (1289)
T 3avx_A 357 ----PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE--EL 430 (1289)
T ss_dssp ----SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH--HH
T ss_pred ----CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch--hh
Confidence 368999999999999999999999999999999999999999999999999999999 58899999986310 00
Q ss_pred HHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCC
Q psy16810 164 AEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPA 243 (755)
Q Consensus 164 ~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~ 243 (755)
.+.+...+..++...+. ..+ .+.++. ++... |.+ . ...|+.+
T Consensus 431 le~i~eEi~elLk~~G~-----~~~-----~vp~Ip-vSAkt-----------G~n---------g-------~~~w~eG 472 (1289)
T 3avx_A 431 LELVEMEVRELLSQYDF-----PGD-----DTPIVR-GSALK-----------ALE---------G-------DAEWEAK 472 (1289)
T ss_dssp HHHHHHHHHHHHHHTTS-----CTT-----TCCEEE-CCSTT-----------TTT---------C-------CHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-----ccc-----ceeEEE-EEecc-----------CCC---------C-------Ccccccc
Confidence 01111222222222110 000 000000 00000 000 0 0012222
Q ss_pred hHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCe
Q psy16810 244 GEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQK 323 (755)
Q Consensus 244 g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~ 323 (755)
...|++++.+++|.|.. +.++|+++.|..++.+++.|. +++|||++|+|++||.
T Consensus 473 I~eLleaL~~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~ 526 (1289)
T 3avx_A 473 ILELAGFLDSYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEE 526 (1289)
T ss_dssp HHHHHHHHHHTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCE
T ss_pred chhhHhHHhhhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCE
Confidence 36799999999998731 236799999999999999998 8999999999999999
Q ss_pred EEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cccceeee-cceeecCC
Q psy16810 324 ARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GVDQFLVK-TGTITTFK 386 (755)
Q Consensus 324 v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~-~gTl~~~~ 386 (755)
|.+.+.+. ... .+|..|.. + ..++++|.|||+|++. |++...+. |++|+++.
T Consensus 527 V~I~ps~~--~~~-----~kVksI~~-~---~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 527 VEIVGIKE--TQK-----STCTGVEM-F---RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp EEEESSSS--CEE-----EEEEEEEC-S---SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEEecCCC--cee-----EEEEEEee-c---CceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 99876421 011 25666643 2 3679999999998874 65322233 44777654
No 23
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.96 E-value=1.1e-28 Score=268.81 Aligned_cols=248 Identities=14% Similarity=0.167 Sum_probs=170.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.+||+++||+|+|||||+++|+ +||+|+..+...+.|.
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~------------------ 58 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE------------------ 58 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC------------------
Confidence 4599999999999999999993 6789998877666553
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEe-ccchhhhcccCCHH
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMN-KMDRALLELQLDAE 165 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iN-KiD~~~~~~~~~~~ 165 (755)
++.++|||||||.+|..++.++++.+|+||+||| ..|+++||+++|..+...++|. |+++| |||+ ..+. .+
T Consensus 59 --~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~---~~ 131 (370)
T 2elf_A 59 --GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHA---ID 131 (370)
T ss_dssp --SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHH---HH
T ss_pred --CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHH---HH
Confidence 6789999999999999999999999999999999 9999999999999999999999 99999 9998 4210 11
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehh-hhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCCh
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDS-IMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAG 244 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~-v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g 244 (755)
+....+...+...+. ..+.++.. ++... ..|--+.
T Consensus 132 ~~~~~i~~~l~~~~~------------~~~~ii~~~~SA~~--------------------------------~~~g~gi 167 (370)
T 2elf_A 132 ELKAKLKVITSGTVL------------QDWECISLNTNKSA--------------------------------KNPFEGV 167 (370)
T ss_dssp HHHHHHHHHTTTSTT------------TTCEEEECCCCTTS--------------------------------SSTTTTH
T ss_pred HHHHHHHHHHHhcCC------------CceEEEeccccccc--------------------------------CcCCCCH
Confidence 112222222222110 00000000 00000 0011122
Q ss_pred HHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeE
Q psy16810 245 EALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKA 324 (755)
Q Consensus 245 ~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v 324 (755)
+.|++.+.+++|+|..... .....|+.++|..++..++.|+ ++++||++|+|++||+|
T Consensus 168 ~~L~~~l~~~~~~~~~~~~---------------------~~~~~p~r~~v~~vf~~~~~G~-v~~g~v~~G~l~~gd~v 225 (370)
T 2elf_A 168 DELKARINEVAEKIEAENA---------------------ELNSLPARIFIDHAFNVTGKGC-VVLGVVKQGISKDKDKT 225 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------HGGGSCCEEEEEEEECCC---C-EEEEEEEESEEETTCEE
T ss_pred HHHHHHHHhhccccccCCc---------------------ccccccccccceeEEEcCCCce-EEEEEEECCEEeeCCEE
Confidence 5677777777765511000 0013466777777777788998 89999999999999999
Q ss_pred EEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cc--cceeeecceeec
Q psy16810 325 RIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GV--DQFLVKTGTITT 384 (755)
Q Consensus 325 ~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~~~gTl~~ 384 (755)
++.+. +... +|.++.. ++ +++++|.|||+|++. |+ ++. .+|++|++
T Consensus 226 ~~~p~----~~~~-----~V~~i~~-~~---~~v~~a~aGd~v~i~l~gv~~~~i-~~Gdvl~~ 275 (370)
T 2elf_A 226 KIFPL----DRDI-----EIRSIQS-HD---VDIDSAPAGTRVGMRLKNVQAKDI-ERGFIISD 275 (370)
T ss_dssp EEETT----TEEE-----EEEEEEE-TT---EEESEEETTCEEEEEEESCCGGGC-CTTCEEES
T ss_pred EECCC----CcEE-----EEeEEEE-CC---CCccEEcCCCcceEEEeccCHHHc-CCceEEEC
Confidence 98754 3332 6777743 33 789999999999886 54 342 23457776
No 24
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.96 E-value=1.4e-28 Score=278.42 Aligned_cols=295 Identities=19% Similarity=0.287 Sum_probs=186.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-----ccccCCchhhhhhccccccceEEEEeee
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-----TRFTDTRKDEQERCITIKSTAISMYFEL 70 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 70 (755)
+...||+++||+|+|||||+++|++.++.+... ..|+ ..++|....|+++|+|+......+.+.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 456899999999999999999999998877642 1121 235899999999999999988877663
Q ss_pred CccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-------ceehHHHHHHHHHHcC
Q psy16810 71 DDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-------VCVQTETVLRQAIAER 143 (755)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~ 143 (755)
++.++|||||||.+|...+..+++.+|++|+|||+.+| +..||.+++..+...+
T Consensus 110 -------------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~ 170 (483)
T 3p26_A 110 -------------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG 170 (483)
T ss_dssp -------------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT
T ss_pred -------------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999998 6789999999999999
Q ss_pred Cc-eEEEEeccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCc
Q psy16810 144 IK-PVLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKP 222 (755)
Q Consensus 144 ip-~iv~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~ 222 (755)
+| +|+++||+|+...+ +...+++...+...+..+.... ..+.++. ++.. .|..+..
T Consensus 171 ~~~iIvviNK~Dl~~~~-~~~~~~i~~~~~~~l~~~g~~~----------~~~~~i~-iSA~-----------~g~gi~e 227 (483)
T 3p26_A 171 IHNLIIAMNKMDNVDWS-QQRFEEIKSKLLPYLVDIGFFE----------DNINWVP-ISGF-----------SGEGVYK 227 (483)
T ss_dssp CCCEEEEEECGGGGTTC-HHHHHHHHHHHHHHHHHHTCCG----------GGEEEEE-CCSS-----------SCTTSSS
T ss_pred CCcEEEEEECcCcccch-HHHHHHHHHHHHHHHHHcCCCc----------ccceEEE-Eeee-----------cCCCccc
Confidence 75 88999999986411 0111222333333332211100 0000000 0000 0111110
Q ss_pred cccccchHHHHHHHHHhccCC--hHHHHHHHHhcCCC--CccccccchhhccCCCCCccccccccccCCCCCeEEEEEee
Q psy16810 223 EDKEKDGKALLKVVMRTWLPA--GEALLQMIAIHLPS--PVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKM 298 (755)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~p~--g~~LLd~i~~~lPs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~ 298 (755)
+... . -...|+.+ ...+|+.+...+|. |. .+.+.|+++.|..+
T Consensus 228 --l~~~-~-----~~~~wy~g~~L~~~L~~i~~~~~~~~p~-------------------------~~~~~p~r~~v~~v 274 (483)
T 3p26_A 228 --IEYT-D-----EVRQWYNGPNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEI 274 (483)
T ss_dssp --SCCC-H-----HHHHHCCSCCHHHHHHHHHHHHHHHHTT-------------------------CCSSSCCEEEEEEE
T ss_pred --cCcc-c-----ccccccCCCCHHHHHHHHHhhccccccc-------------------------ccCCCceEEEEEEE
Confidence 0000 0 01235532 24566666655554 21 23478999999999
Q ss_pred eccC---CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEec----cCceeeeccccCCCeEEec-
Q psy16810 299 VPTS---DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMM----GRYVEAIEDVPSGNICGLV- 370 (755)
Q Consensus 299 ~~~~---~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~----g~~~~~v~~a~AGdIvai~- 370 (755)
+..+ +.|+ ++.|||.+|+|++||.|.+.+. +.. .+|..+.... |..+.++++|.|||+|++.
T Consensus 275 ~~~~~~~g~g~-v~~G~v~~G~l~~gd~v~~~p~----~~~-----~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l 344 (483)
T 3p26_A 275 IPSKKTSNDLA-LVSGKLESGSIQPGESLTIYPS----EQS-----CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 344 (483)
T ss_dssp EC---CCSCCE-EEEEEEEESEECTTCEEEEETT----TEE-----EEEEEEEETTTC-----CCEESCEETTCEEEEEE
T ss_pred EccCCcCCCce-EEEEEEecceEccCCEEEEeCC----CCe-----EEEEEEEEcCccccccccccccEECCCCEEEEEE
Confidence 8876 4677 8999999999999999998764 222 1577776542 3456899999999999882
Q ss_pred -c--ccceeeecceeecCCC
Q psy16810 371 -G--VDQFLVKTGTITTFKD 387 (755)
Q Consensus 371 -g--l~~~~~~~gTl~~~~~ 387 (755)
+ .++. -+|+++++.+.
T Consensus 345 ~~~~~~di-~rG~vl~~~~~ 363 (483)
T 3p26_A 345 RKAYPEDI-QNGDLAASVDY 363 (483)
T ss_dssp ESCCGGGC-CTTCEEECTTC
T ss_pred EecccccC-CceEEEEcCCC
Confidence 3 3443 24558887654
No 25
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=1.8e-28 Score=274.00 Aligned_cols=282 Identities=21% Similarity=0.272 Sum_probs=186.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCcc-------cccCCchhhhhhccccccceEEEEe
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGET-------RFTDTRKDEQERCITIKSTAISMYF 68 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~~-------~~~d~~~~E~~rgiTi~~~~~~~~~ 68 (755)
+..+||+++||+|||||||+++|++..+.+... ..|++ ..+|..++|++||+|++.+...+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 457899999999999999999999988765432 12322 2478889999999999987766655
Q ss_pred eeCccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eE
Q psy16810 69 ELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PV 147 (755)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~i 147 (755)
. ++.++|||||||.+|..++.++++.+|++|+|+|+.+|+..||.+++..+...++| +|
T Consensus 102 ~--------------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iI 161 (434)
T 1zun_B 102 A--------------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIV 161 (434)
T ss_dssp S--------------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEE
T ss_pred C--------------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE
Confidence 3 78999999999999999999999999999999999999999999999999999986 78
Q ss_pred EEEeccchhhhcccCCHH---HHHHHHHHHhhhce--eeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCc
Q psy16810 148 LFMNKMDRALLELQLDAE---DLYQTFQRIVENVN--VIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKP 222 (755)
Q Consensus 148 v~iNKiD~~~~~~~~~~~---~~~~~~~~ii~~v~--~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~ 222 (755)
+++||+|+... +.+ +....+..+++..+ ..... ++. ++.. .|..+..
T Consensus 162 vviNK~Dl~~~----~~~~~~~i~~~~~~~~~~~g~~~~~~~------------~i~-vSA~-----------~g~gi~~ 213 (434)
T 1zun_B 162 VAINKMDLNGF----DERVFESIKADYLKFAEGIAFKPTTMA------------FVP-MSAL-----------KGDNVVN 213 (434)
T ss_dssp EEEECTTTTTS----CHHHHHHHHHHHHHHHHTTTCCCSEEE------------EEE-CCTT-----------TCTTTSS
T ss_pred EEEEcCcCCcc----cHHHHHHHHHHHHHHHHHhCCCccCce------------EEE-Eecc-----------CCCCccc
Confidence 89999999641 122 22333333333332 00000 000 0000 0111100
Q ss_pred cccccchHHHHHHHHHhccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccC
Q psy16810 223 EDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTS 302 (755)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~ 302 (755)
... ...|+. +..|++.+ +.+|.|. .+.++|+++.|..++...
T Consensus 214 --~~~---------~~~w~~-g~~L~~~l-~~i~~~~-------------------------~~~~~~~~~~v~~v~~~~ 255 (434)
T 1zun_B 214 --KSE---------RSPWYA-GQSLMEIL-ETVEIAS-------------------------DRNYTDLRFPVQYVNRPN 255 (434)
T ss_dssp --CCT---------TCTTCC-SCCTTHHH-HHSCCTT-------------------------CCCSSSCEEECCEEECSS
T ss_pred --ccc---------cCcccc-CchHHHHH-hcCCCcc-------------------------cCCCCCcEEEEEEEeccC
Confidence 000 012332 13355533 3456552 134678999998887766
Q ss_pred CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceee-ecce
Q psy16810 303 DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLV-KTGT 381 (755)
Q Consensus 303 ~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~-~~gT 381 (755)
+.|+ ...|||.+|+|++||.|.+.+. ++. .+|..+.... .++++|.|||+|++...+...+ +|++
T Consensus 256 ~~~~-g~~G~v~~G~l~~gd~v~~~p~----~~~-----~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~ 321 (434)
T 1zun_B 256 LNFR-GFAGTLASGIVHKGDEIVVLPS----GKS-----SRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDL 321 (434)
T ss_dssp SSCC-EEEEECCBSCEETTCEEEETTT----CCE-----EEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCE
T ss_pred CCce-EEEEEEecceEeCCCEEEEecC----CeE-----EEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccE
Confidence 6676 6889999999999999998764 222 2577776543 4799999999999976443222 4557
Q ss_pred eecCCC
Q psy16810 382 ITTFKD 387 (755)
Q Consensus 382 l~~~~~ 387 (755)
|+....
T Consensus 322 l~~~~~ 327 (434)
T 1zun_B 322 LVHADN 327 (434)
T ss_dssp EEETTS
T ss_pred EECCCC
Confidence 877543
No 26
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.96 E-value=6.6e-28 Score=267.67 Aligned_cols=269 Identities=22% Similarity=0.235 Sum_probs=175.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+.++||+++||+|||||||+++|+. ...|..++|++||||+..+...+.|...+....|........
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g-------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~ 74 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTG-------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPY 74 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT-------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC-------------CccccChhhhcCCcEEEEeeeeeecccccccccccccccccc
Confidence 5579999999999999999999952 135778889999999998877666632100000000000000
Q ss_pred cCC---CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHHcCC-ceEEEEeccchhhhcc
Q psy16810 86 KNE---KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAERI-KPVLFMNKMDRALLEL 160 (755)
Q Consensus 86 ~~~---~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~i-p~iv~iNKiD~~~~~~ 160 (755)
... ..+.++|||||||.+|..++.++++.+|++|+|||+++|+ ++||.+++..+..+++ |+++++||+|+...
T Consensus 75 ~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~-- 152 (410)
T 1kk1_A 75 CGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK-- 152 (410)
T ss_dssp TCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH--
T ss_pred cCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH--
Confidence 000 1278999999999999999999999999999999999998 9999999999988887 67889999999642
Q ss_pred cCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCC-CCCccccccchHHHHHHHHHh
Q psy16810 161 QLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGI-ELKPEDKEKDGKALLKVVMRT 239 (755)
Q Consensus 161 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~-~l~~~~~~~~~~~l~~~~~~~ 239 (755)
++....+..+. ++++.+.. ...--.. +.
T Consensus 153 ----~~~~~~~~~i~-----------------------------------~~l~~~~~~~~~~i~v------------SA 181 (410)
T 1kk1_A 153 ----EKALENYRQIK-----------------------------------EFIEGTVAENAPIIPI------------SA 181 (410)
T ss_dssp ----HHHHHHHHHHH-----------------------------------HHHTTSTTTTCCEEEC------------BT
T ss_pred ----HHHHHHHHHHH-----------------------------------HHHHhcCcCCCeEEEe------------eC
Confidence 22111222111 12111000 0000000 00
Q ss_pred ccC-ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeecc--------CCCCceeEE
Q psy16810 240 WLP-AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPT--------SDKGRFYAF 310 (755)
Q Consensus 240 ~~p-~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~--------~~~G~~l~~ 310 (755)
+.. ....|++++.+++|.|. .+.+.|+.++|.+++.. ++.|. +++
T Consensus 182 ~~g~gi~~L~~~l~~~~~~p~-------------------------~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~-v~~ 235 (410)
T 1kk1_A 182 LHGANIDVLVKAIEDFIPTPK-------------------------RDPNKPPKMLVLRSFDVNKPGTPPEKLVGG-VLD 235 (410)
T ss_dssp TTTBSHHHHHHHHHHHSCCCC-------------------------CCTTSCCEEEEEEEECCSCCC----CCCCC-EEE
T ss_pred CCCCCHHHHHHHHHHhCCCCc-------------------------cccCCCcEEEEEEEEeccCCCccccCCceE-EEE
Confidence 000 12578999998898873 13467888999887643 45787 899
Q ss_pred EEEEEeEecCCCeEEEccCCCC-CCCcccc--cccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 311 GRVFSGKVATGQKARIMGPNYI-PGKKEDL--YEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 311 ~RV~sGtL~~g~~v~i~~~n~~-~~~~e~~--~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
+||++|+|++||.|.+.+.+.. .+....+ ...+|..+.. ...++++|.|||++++.
T Consensus 236 g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~----~~~~v~~a~aG~~v~~~ 294 (410)
T 1kk1_A 236 GSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA----GGQFVEEAYPGGLVGVG 294 (410)
T ss_dssp EEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEE
T ss_pred EEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEE----CCeEecEEcCCCEEEEE
Confidence 9999999999999998652100 0000000 0124555542 34789999999998885
No 27
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-28 Score=279.50 Aligned_cols=296 Identities=19% Similarity=0.289 Sum_probs=197.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCcccc----------ccCc-----ccccCCchhhhhhccccccceEEEEeee
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA----------KAGE-----TRFTDTRKDEQERCITIKSTAISMYFEL 70 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 70 (755)
+...||+++||+|+|||||+++|++.++.+... ..|+ ..++|..+.|+.+|+|+......+.+.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 456799999999999999999999988876642 2222 235788899999999999988877764
Q ss_pred CccccccccCCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc-------ceehHHHHHHHHHHcC
Q psy16810 71 DDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-------VCVQTETVLRQAIAER 143 (755)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~ 143 (755)
++.++|||||||.+|...+..+++.+|++|+|||+..| ...||.+++..+...+
T Consensus 244 -------------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg 304 (611)
T 3izq_1 244 -------------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG 304 (611)
T ss_dssp -------------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT
T ss_pred -------------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999998 5789999999999999
Q ss_pred Cc-eEEEEeccchhhhcccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCc
Q psy16810 144 IK-PVLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKP 222 (755)
Q Consensus 144 ip-~iv~iNKiD~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~ 222 (755)
+| +|+++||+|+...+ +...+++...+...+..+.... ..+.++. ++. ..|..+..
T Consensus 305 i~~iIVVvNKiDl~~~~-~~~~~ei~~~l~~~l~~~g~~~----------~~~~~i~-vSA-----------~tG~gI~e 361 (611)
T 3izq_1 305 IHNLIIAMNKMDNVDWS-QQRFEEIKSKLLPYLVDIGFFE----------DNINWVP-ISG-----------FSGEGVYK 361 (611)
T ss_dssp CCEEEEEEECTTTTTTC-HHHHHHHHHHHHHHHHHHTCCG----------GGCEEEE-CCT-----------TTCTTTSS
T ss_pred CCeEEEEEecccccchh-HHHHHHHHHHHHHHHHhhcccc----------cCccEEe-eec-----------ccCCCccc
Confidence 87 78899999986410 0011222333333332221100 0000000 000 00111110
Q ss_pred cccccchHHHHHHHHHhccCChHHHHHHHHh---cCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeee
Q psy16810 223 EDKEKDGKALLKVVMRTWLPAGEALLQMIAI---HLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMV 299 (755)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~p~g~~LLd~i~~---~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~ 299 (755)
-.... -...|+.+ ..|++.+.. .+|... .....+.|+++.|..++
T Consensus 362 l~~~~--------~~~~Wy~g-~~L~~~L~~l~~~~p~~~-----------------------p~~~~~~p~r~~V~~v~ 409 (611)
T 3izq_1 362 IEYTD--------EVRQWYNG-PNLMSTLENAAFKISKEN-----------------------EGINKDDPFLFSVLEII 409 (611)
T ss_dssp CTTSC--------TTCCSCCS-CCHHHHHTTSCCCCCCSS-----------------------SCCSCCSCCEEECCEEE
T ss_pred cCccc--------cccccccC-CcHHHHHHHHhhcccccC-----------------------cccccccchhhheeeee
Confidence 00000 00135432 335544433 333210 01235789999999999
Q ss_pred ccC---CCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEe----ccCceeeeccccCCCeEEe--c
Q psy16810 300 PTS---DKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILM----MGRYVEAIEDVPSGNICGL--V 370 (755)
Q Consensus 300 ~~~---~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~----~g~~~~~v~~a~AGdIvai--~ 370 (755)
..+ +.|+ ++.|||.+|+|++||.|.+++.+ .. .+|.++... .|..+.++++|.|||+|++ .
T Consensus 410 ~~~~~~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~~-----~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~ 479 (611)
T 3izq_1 410 PSKKTSNDLA-LVSGKLESGSIQPGESLTIYPSE----QS-----CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR 479 (611)
T ss_dssp CCSSSCSSSS-EEEEEEEESEECTTCEEEETTTT----EE-----EEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEES
T ss_pred ccCccCCCee-EEEEEEEeceeccCCEEEEecCC----ce-----EEEEEEEEcccccccccccccceecCCCcceEEee
Confidence 876 4677 89999999999999999987642 22 157777644 2556789999999999998 3
Q ss_pred cc--cceeeecceeecCCC
Q psy16810 371 GV--DQFLVKTGTITTFKD 387 (755)
Q Consensus 371 gl--~~~~~~~gTl~~~~~ 387 (755)
++ .+. .+|+++++++.
T Consensus 480 ~~~~~di-~rGdvl~~~~~ 497 (611)
T 3izq_1 480 KAYPEDI-QNGDLAASVDY 497 (611)
T ss_dssp SCCTTSC-CTTCEEBCSTT
T ss_pred eccHhhC-cceEEccCCCC
Confidence 44 442 23558876554
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=2e-26 Score=255.47 Aligned_cols=270 Identities=23% Similarity=0.297 Sum_probs=169.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+..+||+++||+|||||||+++|+. ...|...+|+++|||+..+...+.+...+....|...... .
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g-------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~-~ 71 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTG-------------VWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC-P 71 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHS-------------CCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC-T
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhC-------------CccccCcccccCCcEEEecccccccccccccccccccccc-c
Confidence 5678999999999999999999942 1357788899999999887665554211000000000000 0
Q ss_pred cCC----CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHHcCC-ceEEEEeccchhhhc
Q psy16810 86 KNE----KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAERI-KPVLFMNKMDRALLE 159 (755)
Q Consensus 86 ~~~----~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~i-p~iv~iNKiD~~~~~ 159 (755)
..+ ..+.++|||||||.+|..++.++++.+|++|+|+|+++|+ +.||.+++..+...++ |+++++||+|+...+
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 000 1278999999999999999999999999999999999998 9999999998888887 688999999986421
Q ss_pred ccCCHHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHh
Q psy16810 160 LQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRT 239 (755)
Q Consensus 160 ~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~ 239 (755)
. ..+.++.+...+.... .. ...++. ++ ...|.
T Consensus 152 ~---~~~~~~~i~~~l~~~~-------~~-----~~~~i~-vS-----------A~~g~--------------------- 183 (408)
T 1s0u_A 152 Q---AEENYEQIKEFVKGTI-------AE-----NAPIIP-IS-----------AHHEA--------------------- 183 (408)
T ss_dssp T---TTTHHHHHHHHHTTST-------TT-----TCCEEE-C--------------------------------------
T ss_pred H---HHHHHHHHHHHHhhcC-------CC-----CCeEEE-ee-----------CCCCC---------------------
Confidence 0 0111112222211100 00 000000 00 00000
Q ss_pred ccCChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeecc--------CCCCceeEEE
Q psy16810 240 WLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPT--------SDKGRFYAFG 311 (755)
Q Consensus 240 ~~p~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~--------~~~G~~l~~~ 311 (755)
....|++.+.+++|.|. .+.++|+.++|.++|.. ++.|. ++.|
T Consensus 184 ---gi~~L~~~l~~~i~~~~-------------------------~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~-v~~g 234 (408)
T 1s0u_A 184 ---NIDVLLKAIQDFIPTPK-------------------------RDPDATPRMYVARSFDINKPGTEIKDLKGG-VLGG 234 (408)
T ss_dssp ---CHHHHHHHHHHHSCCCC-------------------------CCTTSCCEEEEEEEECCCCSSCCGGGCCCC-EEEE
T ss_pred ---CHHHHHHHHHHhCCCCc-------------------------ccCCCCeEEEEEEEEeecCCCcccccCcee-EEEE
Confidence 12568888888888773 23467899999887643 34787 8999
Q ss_pred EEEEeEecCCCeEEEccCCCC-CCCcccc--cccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 312 RVFSGKVATGQKARIMGPNYI-PGKKEDL--YEKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 312 RV~sGtL~~g~~v~i~~~n~~-~~~~e~~--~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
||++|+|++||.|.+.+.+.. ......+ ...+|..|... ..++++|.|||+|++.
T Consensus 235 ~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~ 292 (408)
T 1s0u_A 235 AIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG----NTILRKAHPGGLIGVG 292 (408)
T ss_dssp EEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET----TEEESEECSSSCEEEE
T ss_pred EEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC----CEEcCEEeCCCeEEEE
Confidence 999999999999998653110 0000000 01256676542 3689999999999984
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.94 E-value=1.7e-28 Score=275.02 Aligned_cols=313 Identities=19% Similarity=0.239 Sum_probs=204.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+.++|+++||+|||||||+++|+...- . ....+|+|+......+.|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--~--------------~~e~~GIT~~i~~~~v~~----------------- 48 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--A--------------SGEAGGITQHIGAYHVET----------------- 48 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--S--------------BTTBCCCCCCSSCCCCCT-----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--c--------------cccCCCeeEeEEEEEEEE-----------------
Confidence 4678999999999999999999965310 0 112368888776655444
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHH
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAE 165 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~ 165 (755)
+++.++|||||||.+|...+.++++.+|++|+|+|+.+|+++||.++|..+...++|+|+++||+|+...+..
T Consensus 49 ---~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~---- 121 (501)
T 1zo1_I 49 ---ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPD---- 121 (501)
T ss_dssp ---TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCC----
T ss_pred ---CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHH----
Confidence 3578999999999999999999999999999999999999999999999999999999999999999753211
Q ss_pred HHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChH
Q psy16810 166 DLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGE 245 (755)
Q Consensus 166 ~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~ 245 (755)
. +...+... ..+....+ +.+.++. ++ ...|.. ..
T Consensus 122 ~-------v~~~l~~~-~~~~~~~~--~~~~~v~-vS-----------AktG~g------------------------I~ 155 (501)
T 1zo1_I 122 R-------VKNELSQY-GILPEEWG--GESQFVH-VS-----------AKAGTG------------------------ID 155 (501)
T ss_dssp C-------TTCCCCCC-CCCTTCCS--SSCEEEE-CC-----------TTTCTT------------------------CT
T ss_pred H-------HHHHHHHh-hhhHHHhC--CCccEEE-Ee-----------eeeccC------------------------cc
Confidence 0 10100000 00000000 0000000 00 000111 14
Q ss_pred HHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEE
Q psy16810 246 ALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKAR 325 (755)
Q Consensus 246 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~ 325 (755)
.|++.+......+. ...+++.|+.+.|++++.+++.|. ++++||++|+|++||.|.
T Consensus 156 eLle~I~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~d~g~G~-v~~~~V~~Gtlk~Gd~v~ 211 (501)
T 1zo1_I 156 ELLDAILLQAEVLE-----------------------LKAVRKGMASGAVIESFLDKGRGP-VATVLVREGTLHKGDIVL 211 (501)
T ss_dssp THHHHTTTTCCCST-----------------------TTSCCCSBCEEEEEEEEECSSSSE-EEEEEEEESBCCTTCEEE
T ss_pred hhhhhhhhhhhhhc-----------------------cccccccccccceEEEEEeCCcEE-EEEEEEEeeEEecCCEEE
Confidence 56776654321110 013457889999999999999998 999999999999999998
Q ss_pred EccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCCc---c-------------
Q psy16810 326 IMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDA---H------------- 389 (755)
Q Consensus 326 i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~~---~------------- 389 (755)
+.+. .. +|..+. +....++++|.||+.+.+.|+++....|++++...+. .
T Consensus 212 ~g~~------~~-----kVr~i~---~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~ 277 (501)
T 1zo1_I 212 CGFE------YG-----RVRAMR---NELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREV 277 (501)
T ss_dssp EEBS------SC-----EEEEEC---CTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSH
T ss_pred Eccc------ee-----EEEEEE---ecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 6321 11 344443 3333578999999999999988743345555422211 0
Q ss_pred --------cccc----ccccCCceEEEEEeeCCCCChhhHHHHHHHhHhcCCceEEEECCCCceEEEeechhH
Q psy16810 390 --------NLRV----MKFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELH 450 (755)
Q Consensus 390 --------~~~~----~~~~~~Pv~~~~IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElH 450 (755)
.+.. +.....+.+.+.|.+...+-.+.|.++|.+|..+++.+.+. -.|.|.++
T Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~--------~~~vG~i~ 342 (501)
T 1zo1_I 278 KLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKII--------GSGVGGIT 342 (501)
T ss_dssp HHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCC--------CSSSSSSH
T ss_pred HHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEE--------EeccCCCC
Confidence 0111 11111345666677777777888888888888777666552 33467665
No 30
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.94 E-value=3.9e-27 Score=265.69 Aligned_cols=259 Identities=24% Similarity=0.346 Sum_probs=165.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..||+++||+|||||||+++|+... ....+|..++|+++|+|+......+.+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~----------------- 71 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLE----------------- 71 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET-----------------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEEC-----------------
Confidence 46899999999999999999996421 1235788899999999999887777763
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAED 166 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~ 166 (755)
++.++|||||||.+|..++.++++.+|++|+|||+++|+++||.+++..+...++|.|+++||+|+...+ ..+.
T Consensus 72 ---~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~---~~~~ 145 (482)
T 1wb1_A 72 ---NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE---EIKR 145 (482)
T ss_dssp ---TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH---HHHH
T ss_pred ---CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccch---hHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999985310 0111
Q ss_pred HHHHHHHHhhhc-eeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChH
Q psy16810 167 LYQTFQRIVENV-NVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGE 245 (755)
Q Consensus 167 ~~~~~~~ii~~v-~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~ 245 (755)
....+...+... ... ...++. ++... |. +..
T Consensus 146 ~~~~l~~~l~~~~~~~------------~~~ii~-vSA~~-----------g~------------------------gI~ 177 (482)
T 1wb1_A 146 TEMIMKSILQSTHNLK------------NSSIIP-ISAKT-----------GF------------------------GVD 177 (482)
T ss_dssp HHHHHHHHHHHSSSGG------------GCCEEE-CCTTT-----------CT------------------------THH
T ss_pred HHHHHHHHHhhhcccc------------cceEEE-EECcC-----------CC------------------------CHH
Confidence 122222222111 000 000000 00000 00 114
Q ss_pred HHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEE
Q psy16810 246 ALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKAR 325 (755)
Q Consensus 246 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~ 325 (755)
.|++.+.+.+|.|.. ..++++|+.+.|..++..++.|. ++.+||.+|+|++||.|.
T Consensus 178 ~L~~~L~~~i~~~~~-----------------------~~~~~~~~~~~v~~v~~~~g~G~-v~~g~v~~G~l~~gd~v~ 233 (482)
T 1wb1_A 178 ELKNLIITTLNNAEI-----------------------IRNTESYFKMPLDHAFPIKGAGT-VVTGTINKGIVKVGDELK 233 (482)
T ss_dssp HHHHHHHHHHHHSCC-----------------------CCCSSSCCBCBCSCEECCSSCCC-EECCCCCBSCCCSSEEEC
T ss_pred HHHHHHHHhhcCccc-----------------------cccccccccccceeEEEecCCce-EEEEEEEEeEEeeCCEEE
Confidence 566666666553310 01345688888888888889998 899999999999999998
Q ss_pred EccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--cccceeee-ccee
Q psy16810 326 IMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV--GVDQFLVK-TGTI 382 (755)
Q Consensus 326 i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~-~gTl 382 (755)
+.+. +... +|..+.. ...++++|.|||.|++. |++...+. |+++
T Consensus 234 ~~p~----~~~~-----~V~~i~~----~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 234 VLPI----NMST-----KVRSIQY----FKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280 (482)
T ss_dssp CTTT----CCCE-----EECCBCG----GGSCBCCCCSSCCCCEECSSCCSSCCCSSCBC
T ss_pred ECCC----CcEE-----EEeEEEE----CCeEeeEecCCCEEEEEecCCCHhhccccceE
Confidence 7653 2221 4555432 23678999999998774 76532233 4466
No 31
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=2.7e-25 Score=245.93 Aligned_cols=266 Identities=17% Similarity=0.160 Sum_probs=167.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..||+++||+|||||||+++|+.............+. ......+..++++.......+.+. .
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 69 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNI-GVCESCKKPEAYVTEPSCKSCGSD---------------D 69 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEE-EECTTSCTTTTEESSSCCGGGTCC---------------S
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccce-eeccccccccceeccccccccccc---------------c
Confidence 456899999999999999999996532111100111111 111222334555544322111111 0
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehHHHHHHHHHHcCC-ceEEEEeccchhhhcccCC
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAERI-KPVLFMNKMDRALLELQLD 163 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~i-p~iv~iNKiD~~~~~~~~~ 163 (755)
.....+.++|+|||||.+|..++.++++.+|++|+|+|+.+|. ..||.+++..+...++ |+++++||+|+..
T Consensus 70 ~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~------ 143 (403)
T 3sjy_A 70 EPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS------ 143 (403)
T ss_dssp CCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC------
T ss_pred cccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc------
Confidence 0112378999999999999999999999999999999999998 9999999999998887 7899999999853
Q ss_pred HHHHHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCC-CCCccccccchHHHHHHHHHhccC
Q psy16810 164 AEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGI-ELKPEDKEKDGKALLKVVMRTWLP 242 (755)
Q Consensus 164 ~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~-~l~~~~~~~~~~~l~~~~~~~~~p 242 (755)
.++....+..+.+ ++..++. ...--.. +....
T Consensus 144 ~~~~~~~~~~i~~-----------------------------------~l~~~~~~~~~ii~v------------SA~~g 176 (403)
T 3sjy_A 144 KEEALSQYRQIKQ-----------------------------------FTKGTWAENVPIIPV------------SALHK 176 (403)
T ss_dssp HHHHHHHHHHHHH-----------------------------------HHTTSTTTTCCEEEC------------BTTTT
T ss_pred hHHHHHHHHHHHH-----------------------------------HHHhhCCCCCEEEEE------------ECCCC
Confidence 2222222222211 1111100 0000000 00000
Q ss_pred -ChHHHHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeecc--------CCCCceeEEEEE
Q psy16810 243 -AGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPT--------SDKGRFYAFGRV 313 (755)
Q Consensus 243 -~g~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~--------~~~G~~l~~~RV 313 (755)
....|++.+.+++|.|. .+.++|+.++|.+++.. ++.|. +++|||
T Consensus 177 ~gi~~L~~~l~~~l~~~~-------------------------~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~-v~~g~v 230 (403)
T 3sjy_A 177 INIDSLIEGIEEYIKTPY-------------------------RDLSQKPVMLVIRSFDVNKPGTQFNELKGG-VIGGSI 230 (403)
T ss_dssp BSHHHHHHHHHHHSCCCC-------------------------CCTTSCCEEEEEEEECCCCTTCCSSSCCCC-EEEEEE
T ss_pred cChHHHHHHHHHhCCCCC-------------------------CCCCCCcEEEEEEEEeecCCCcccccCcCc-EEEEEE
Confidence 12578999988888773 23467899999987753 34787 899999
Q ss_pred EEeEecCCCeEEEccCCCCC-CCccccc--ccccceEEEeccCceeeeccccCCCeEEec
Q psy16810 314 FSGKVATGQKARIMGPNYIP-GKKEDLY--EKAIQRTILMMGRYVEAIEDVPSGNICGLV 370 (755)
Q Consensus 314 ~sGtL~~g~~v~i~~~n~~~-~~~e~~~--~~~i~~l~~~~g~~~~~v~~a~AGdIvai~ 370 (755)
++|++++||.|.+.+.+... +.+..+. ..+|..+.. ...++++|.|||+|++.
T Consensus 231 ~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 231 IQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVAIG 286 (403)
T ss_dssp EESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEE
T ss_pred EeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEEEE
Confidence 99999999999986532100 0000000 125666654 34789999999999983
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.93 E-value=6e-27 Score=264.59 Aligned_cols=258 Identities=22% Similarity=0.279 Sum_probs=176.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+...|+++||+|||||||+++|....-. .+...|+|.......+.+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~----------------~~~~~giT~~i~~~~v~~~----------------- 49 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA----------------AMEAGGITQHIGAFLVSLP----------------- 49 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH----------------HSSSCCBCCCTTSCCBCSS-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc----------------cccCCceeEEEeEEEEEeC-----------------
Confidence 4567999999999999999999653211 1123466666554443332
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhhcccCCHHH
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAED 166 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~~~~~~~~~ 166 (755)
++..++|||||||.+|...+.++++.+|++|+|+|+.+|+.+||.++|..+...++|+|+++||+|+...+......+
T Consensus 50 --~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~ 127 (537)
T 3izy_P 50 --SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKE 127 (537)
T ss_dssp --CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSH
T ss_pred --CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999999975322111111
Q ss_pred HHHHHHHHhhhceeeEEEecCCCCCCcceEeehhhhcccHHHHHHHHHHhCCCCCccccccchHHHHHHHHHhccCChHH
Q psy16810 167 LYQTFQRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEA 246 (755)
Q Consensus 167 ~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~l~e~v~~~~~e~l~~lle~~~~~l~~~~~~~~~~~l~~~~~~~~~p~g~~ 246 (755)
+... ......|. +.+.++. ++.. .|. +...
T Consensus 128 ----l~~~----~~~~e~~~------~~~~iv~-vSAk-----------tG~------------------------GI~e 157 (537)
T 3izy_P 128 ----LLAY----DVVCEDYG------GDVQAVH-VSAL-----------TGE------------------------NMMA 157 (537)
T ss_dssp ----HHHT----TSCCCCSS------SSEEECC-CCSS-----------SSC------------------------SSHH
T ss_pred ----HHhh----hhhHHhcC------CCceEEE-EECC-----------CCC------------------------Cchh
Confidence 1000 00000000 0000000 0000 001 1145
Q ss_pred HHHHHHhcCCCCccccccchhhccCCCCCccccccccccCCCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEE
Q psy16810 247 LLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARI 326 (755)
Q Consensus 247 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i 326 (755)
|++.+...++.+.. ..+++.|+.+.|++++.+++.|. ++.++|.+|+|++||.|..
T Consensus 158 Lle~I~~l~~~~~~-----------------------~~~~~~~~~~~V~e~~~~~g~G~-V~~g~V~~G~l~~Gd~v~~ 213 (537)
T 3izy_P 158 LAEATIALAEMLEL-----------------------KADPTGAVEGTVIESFTDKGRGP-VTTAIIQRGTLRKGSILVA 213 (537)
T ss_dssp HHHHHHHHHTTCCC-----------------------CCCSSSSEEEEEEEECCCTTCCC-CEEEEEEEECCSSEEEECC
T ss_pred HHHHHHHhhhcccc-----------------------cCCCCCCcceeEEEEEEeCCCce-EEEEEEecCEEEcCCEEEe
Confidence 66666655443210 13467899999999999999998 8999999999999998852
Q ss_pred ccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEeccccceeeecceeecCCC
Q psy16810 327 MGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKD 387 (755)
Q Consensus 327 ~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~~gTl~~~~~ 387 (755)
+ ... .+|..++...| .++++|.||++|+|.|+++....|++|+...+
T Consensus 214 -g------~~~----~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~ 260 (537)
T 3izy_P 214 -G------KSW----AKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVES 260 (537)
T ss_dssp -S------SCC----EEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCS
T ss_pred -C------Cce----EEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCC
Confidence 2 110 15666654444 67999999999999999975455678876543
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.60 E-value=3.2e-15 Score=158.23 Aligned_cols=118 Identities=25% Similarity=0.223 Sum_probs=92.2
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
..+..+|+|+|++|+|||||+++|+.....+....+++++ ......+.+
T Consensus 4 ~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr---------------~~i~~i~~~---------------- 52 (301)
T 1wf3_A 4 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR---------------KRLRGILTE---------------- 52 (301)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC---------------SCEEEEEEE----------------
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee---------------EEEEEEEEe----------------
Confidence 3456899999999999999999998755443322333321 111111222
Q ss_pred ccCCCCeEEEEEcCCCCcc--------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc--CCceEEEEeccc
Q psy16810 85 AKNEKGFLINLIDSPGHVD--------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--RIKPVLFMNKMD 154 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~d--------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~iv~iNKiD 154 (755)
++.+++|+||||+.+ |...+..+++.+|++++|+|++++...+++.+++++... ++|+++|+||+|
T Consensus 53 ----~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~D 128 (301)
T 1wf3_A 53 ----GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 128 (301)
T ss_dssp ----TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGG
T ss_pred ----CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcc
Confidence 378999999999987 778888999999999999999999888888888888887 899999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 129 l~~ 131 (301)
T 1wf3_A 129 AAK 131 (301)
T ss_dssp GCS
T ss_pred cCC
Confidence 864
No 34
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.54 E-value=2.3e-14 Score=148.61 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=87.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|++|+|||||+++|+.....+.... .+++|.......+.|.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~----------------- 69 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLG--------------SQTLTKTCSKSQGSWG----------------- 69 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT--------------SCCCCCSCEEEEEEET-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCC--------------CCceeeeeEEEEEEeC-----------------
Confidence 468999999999999999999987554433111 1124444444455553
Q ss_pred CCCCeEEEEEcCCCCcccH-----------HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc-----CCceEEEE
Q psy16810 87 NEKGFLINLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLFM 150 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~-----------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~-----~ip~iv~i 150 (755)
++.++||||||+.++. ..+..+++.+|++|+|+|+.. +..+...+|+++.+. +.|+++++
T Consensus 70 ---~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv 145 (260)
T 2xtp_A 70 ---NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLF 145 (260)
T ss_dssp ---TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred ---CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEE
Confidence 7899999999998863 233347788999999999985 777888888888776 77999988
Q ss_pred e-ccchhh
Q psy16810 151 N-KMDRAL 157 (755)
Q Consensus 151 N-KiD~~~ 157 (755)
| |+|+..
T Consensus 146 ~nK~Dl~~ 153 (260)
T 2xtp_A 146 THKEDLNG 153 (260)
T ss_dssp ECGGGGTT
T ss_pred EcccccCC
Confidence 8 999964
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.53 E-value=7.3e-15 Score=142.29 Aligned_cols=117 Identities=28% Similarity=0.392 Sum_probs=91.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.++.++|+++|+.|+|||||+++|+...- .. ....++|.......+.+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~---------------- 52 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKV--TE--------------QEAGGITQHIGAYQVTV---------------- 52 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCS--SC--------------SSCCSSSTTCCCCEEEE----------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc--cc--------------CCCCceeEeeeEEEEEe----------------
Confidence 45678999999999999999999964211 10 00112333333333444
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+..+...++...+..+...++|+++++||+|+..
T Consensus 53 ----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 53 ----NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp ----TTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred ----CCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 367899999999999988888888999999999999999888888888888888999999999999864
No 36
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.52 E-value=1.3e-14 Score=153.61 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=85.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+|+||+|+|||||+++|+...-.+.....+++ .......+.+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tT---------------r~~~~gi~~~------------------ 53 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTT---------------RHRIVGIHTE------------------ 53 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCC---------------SSCEEEEEEE------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcc---------------eeeEEEEEEE------------------
Confidence 4568999999999999999999865332222222221 1111111223
Q ss_pred CCCCeEEEEEcCCCCc-c--------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHV-D--------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~-d--------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++++++|+||||+. + |...+..+++.+|++++|+|+.. +..+++.+++.+...+.|.++++||+|+..
T Consensus 54 --~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 54 --GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp --TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred --CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 37899999999997 3 33445667889999999999988 889999999888888999999999999853
No 37
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.52 E-value=6.8e-14 Score=148.69 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=89.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
...-.|+|+|++|+|||||+++|+...-.+.....++ |.......+.+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~t---------------T~~~~~~~~~~~---------------- 56 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGT---------------TRMRVLGVKNIP---------------- 56 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCC---------------CCSCEEEEEEET----------------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCc---------------eeeEEEEEEecC----------------
Confidence 3456899999999999999999976543333222222 222222222221
Q ss_pred cCCCCeEEEEEcCCCCcccH----------HHHHHHhhhcCcEEEEEcCCCcceehHHHH-HHHHHHcCCceEEEEeccc
Q psy16810 86 KNEKGFLINLIDSPGHVDFS----------SEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~----------~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~~~~ip~iv~iNKiD 154 (755)
.+++++|+||||+.++. ..+..+++.+|++++|+|+.++...++..+ +..+...++|+++|+||+|
T Consensus 57 ---~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~D 133 (308)
T 3iev_A 57 ---NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKID 133 (308)
T ss_dssp ---TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGG
T ss_pred ---CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECcc
Confidence 27899999999997654 677889999999999999999999999988 6777778999999999999
Q ss_pred hh
Q psy16810 155 RA 156 (755)
Q Consensus 155 ~~ 156 (755)
+.
T Consensus 134 l~ 135 (308)
T 3iev_A 134 KI 135 (308)
T ss_dssp GS
T ss_pred CC
Confidence 86
No 38
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.50 E-value=1.1e-14 Score=160.39 Aligned_cols=116 Identities=21% Similarity=0.179 Sum_probs=88.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
...+||+++|+.|+|||||+++|+.... ...+..+|+|+......+.+.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~---------------- 80 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELH---------------- 80 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEET----------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEEC----------------
Confidence 4578999999999999999999843221 122345677888777777764
Q ss_pred cCCCCeEEEEEcCCCCcccH-------HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~-------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
....++|||||||.+|. ..+...++.+|++|+|+|+ +...++..++..+.+.++|+++|+||+|+..
T Consensus 81 ---~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 81 ---PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLG 154 (423)
T ss_dssp ---TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTT
T ss_pred ---CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCC
Confidence 23489999999999874 3467788899999999999 8889999999999999999999999999975
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.49 E-value=1.4e-13 Score=130.68 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=84.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+++|+++|+.|+|||||+++|+....... +...+.|.......+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~------------------- 46 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVV---------------ADVPGVTRDLKEGVVET------------------- 46 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEE-------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeec---------------cCCCCceecceEEEEEe-------------------
Confidence 47999999999999999999975432111 11123333333333333
Q ss_pred CCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..+.++||||+.+ +.......++.+|++++|+|+..+.......++..+...++|+++++||+|+..
T Consensus 47 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 47 -DRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp -TTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred -CCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 367899999999987 455667788999999999999998877777777777778999999999999865
No 40
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.48 E-value=3.4e-13 Score=138.62 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=85.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|++|+|||||+++|+.....+... ...|.|.......+.|
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~------------------ 67 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRL--------------GATSVTRACTTGSRRW------------------ 67 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEE------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccC--------------CCCCccccEEEEEEEE------------------
Confidence 45799999999999999999997654433210 0123444444444445
Q ss_pred CCCCeEEEEEcCCCC--------cccHHHHHHHh----hhcCcEEEEEcCCCcceehHHHHHHHHHHc------CCceEE
Q psy16810 87 NEKGFLINLIDSPGH--------VDFSSEVTAAL----RVTDGALVVVDCVSGVCVQTETVLRQAIAE------RIKPVL 148 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh--------~df~~~~~~al----~~~D~ailVvda~~g~~~qt~~~~~~~~~~------~ip~iv 148 (755)
++..++||||||. .+|..++.+++ +.+|++|+|+|+.. ...+...+++.+.+. +.|+|+
T Consensus 68 --~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 68 --DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp --TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred --CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEE
Confidence 3789999999998 66778888877 89999999999975 666677777777664 789999
Q ss_pred EEeccchhh
Q psy16810 149 FMNKMDRAL 157 (755)
Q Consensus 149 ~iNKiD~~~ 157 (755)
|.||+|+..
T Consensus 145 v~nK~Dl~~ 153 (247)
T 3lxw_A 145 FTRKEDLAG 153 (247)
T ss_dssp EECGGGGTT
T ss_pred EEchHhcCC
Confidence 999999965
No 41
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.45 E-value=2.1e-13 Score=132.22 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
|..+.++..+|+++|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~----------- 53 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ----------------YKATIGADFLTKEVTVD----------- 53 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTT----------------C---CCCSCEEEEECCS-----------
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcc----------------cCCccceEEEEEEEEEc-----------
Confidence 334556789999999999999999999976321100 00111111111112111
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH-------cCCceEEEEec
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA-------ERIKPVLFMNK 152 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~-------~~ip~iv~iNK 152 (755)
......++++||||+.+|.......++.+|++|+|+|+.+....+....|. .+.. .++|+++++||
T Consensus 54 ------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 54 ------GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp ------SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred ------CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 123578999999999999988888999999999999999876444433332 2222 57899999999
Q ss_pred cchhhh
Q psy16810 153 MDRALL 158 (755)
Q Consensus 153 iD~~~~ 158 (755)
+|+...
T Consensus 128 ~Dl~~~ 133 (182)
T 1ky3_A 128 IDAEES 133 (182)
T ss_dssp TTSCGG
T ss_pred Cccccc
Confidence 998543
No 42
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.45 E-value=7.5e-14 Score=155.74 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=86.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..++|+++|++|+|||||+++|+.....+.. ...|+|.......+.+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~----------------- 221 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYN----------------- 221 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEET-----------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec---------------CCCCceeeeeEEEEEEC-----------------
Confidence 5689999999999999999999764322111 12355665555555553
Q ss_pred CCCCeEEEEEcCCCCcc----------cHH-HHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 87 NEKGFLINLIDSPGHVD----------FSS-EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~d----------f~~-~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
+..++||||||+.+ |.. ....+++.+|++++|+|+++|...|+..++..+...++|+++++||+|+
T Consensus 222 ---~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 222 ---QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA 298 (436)
T ss_dssp ---TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred ---CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 67899999999943 332 2346889999999999999999999999888888999999999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 299 ~~ 300 (436)
T 2hjg_A 299 VD 300 (436)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 43
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.43 E-value=2.8e-13 Score=136.54 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=82.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcC-CccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAG-IIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+.++|+++|+.|+|||||+++|+.... ....... |.|.......+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~---------------~~t~~~~~~~~~----------------- 74 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTP---------------GRTQHINYFSVG----------------- 74 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCC---------------CSCCCEEEEEES-----------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCC---------------CcccceEEEEec-----------------
Confidence 3468999999999999999999965431 1111111 223322111111
Q ss_pred ccCCCCeEEEEEcCCCCcc----------cHHHHHHHh---hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEe
Q psy16810 85 AKNEKGFLINLIDSPGHVD----------FSSEVTAAL---RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMN 151 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~d----------f~~~~~~al---~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iN 151 (755)
..++..++||||||+.+ |...+...+ ..+|++++|+|+.++.......++..+...++|+++|+|
T Consensus 75 --~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~n 152 (223)
T 4dhe_A 75 --PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLT 152 (223)
T ss_dssp --CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEE
T ss_pred --CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEe
Confidence 11367899999999733 233333344 448889999999999888888888888889999999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|+|+..
T Consensus 153 K~Dl~~ 158 (223)
T 4dhe_A 153 KCDKLT 158 (223)
T ss_dssp CGGGSC
T ss_pred ccccCC
Confidence 999853
No 44
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.43 E-value=1.5e-13 Score=143.45 Aligned_cols=113 Identities=15% Similarity=0.212 Sum_probs=84.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
++++|+++|++|+|||||+++|+.... ..| ...|+|+......+.|.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-----~~~-----------~~~~~t~~~~~~~~~~~----------------- 48 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-----HVG-----------NWPGVTVEKKEGIMEYR----------------- 48 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-----EEE-----------ECTTSSCEEEEEEEEET-----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-----ccC-----------CCCCeEEEeeEEEEEEC-----------------
Confidence 468999999999999999999954311 111 12356666665666663
Q ss_pred CCCCeEEEEEcCCCCcccHHH------HHHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcC-CceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSE------VTAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAER-IKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~------~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip~iv~iNKiD~~~ 157 (755)
++.++++||||+.+|... ....+ ..+|++++|+|++.+ .+....+.++...+ +|+++++||+|+..
T Consensus 49 ---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 49 ---EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp ---TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred ---CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 678999999999888652 22222 469999999999986 35666777888888 99999999999764
No 45
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=133.67 Aligned_cols=123 Identities=17% Similarity=0.177 Sum_probs=83.0
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
|++..+...+|+++|+.|+|||||+++|+...-. .+...+++.......+.+.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~----------- 54 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEIN----------- 54 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEET-----------
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEEC-----------
Confidence 4455677899999999999999999999431100 0111223333223333332
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc--CCceEEEEeccchhh
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++++|+|++++...+....| ..+... ++|+++|+||+|+..
T Consensus 55 -------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 -------GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp -------TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred -------CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 1237899999999999988888899999999999999987554443333 233332 489999999999864
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.42 E-value=2.7e-13 Score=132.29 Aligned_cols=123 Identities=23% Similarity=0.201 Sum_probs=83.8
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
|+++.++..+|+++|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~----------- 55 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD----------------SNHTIGVEFGSKIINVG----------- 55 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT----------------CCCCSEEEEEEEEEEET-----------
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCccceEEEEEEEEEC-----------
Confidence 344445678999999999999999999975321110 00011111111122221
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH---HcCCceEEEEeccchh
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI---AERIKPVLFMNKMDRA 156 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~ip~iv~iNKiD~~ 156 (755)
+....++|+||||+.+|.......++.+|++|+|+|++.....+....| ..+. ..++|+++++||+|+.
T Consensus 56 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 56 -------GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp -------TEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -------CEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 1246899999999999999999999999999999999986654443333 2222 3578999999999986
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 129 ~ 129 (186)
T 2bme_A 129 A 129 (186)
T ss_dssp G
T ss_pred c
Confidence 4
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.41 E-value=7.6e-13 Score=127.81 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=82.1
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
|....+..+|+++|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~------------ 52 (177)
T 1wms_A 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVD------------ 52 (177)
T ss_dssp -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET------------
T ss_pred CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEEC------------
Confidence 3445567899999999999999999997532100 001112221112222221
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH-------cCCceEEEEecc
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA-------ERIKPVLFMNKM 153 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~-------~~ip~iv~iNKi 153 (755)
+....+.|+||||+.+|.......++.+|++++|+|+.++...+....| ..... .++|+++++||+
T Consensus 53 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 126 (177)
T 1wms_A 53 ------GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126 (177)
T ss_dssp ------TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred ------CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECC
Confidence 1246899999999999999888899999999999999987644433333 22221 578999999999
Q ss_pred chh
Q psy16810 154 DRA 156 (755)
Q Consensus 154 D~~ 156 (755)
|+.
T Consensus 127 Dl~ 129 (177)
T 1wms_A 127 DIS 129 (177)
T ss_dssp TCS
T ss_pred ccc
Confidence 986
No 48
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.41 E-value=1.8e-12 Score=129.78 Aligned_cols=119 Identities=22% Similarity=0.282 Sum_probs=75.7
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
|....+..+|+++|+.|+|||||+++|+... ... . ..|+......+.+.
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~--~~~----~-------------~~~~~~~~~~~~~~------------ 49 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQ--YRD----T-------------QTSITDSSAIYKVN------------ 49 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHSC--CCC----B-------------CCCCSCEEEEEECS------------
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCC--ccc----c-------------cCCcceeeEEEEec------------
Confidence 4445667899999999999999999997642 110 0 01111112223332
Q ss_pred CccccCCCCeEEEEEcCCCCcccHH-HHHHHhhhcCcEEEEEcCCCcceehHHH---HHHHHH------HcCCceEEEEe
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSS-EVTAALRVTDGALVVVDCVSGVCVQTET---VLRQAI------AERIKPVLFMN 151 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~-~~~~al~~~D~ailVvda~~g~~~qt~~---~~~~~~------~~~ip~iv~iN 151 (755)
...++.++++||||+.+|.. .....++.+|++|+|+|++. ...+... .|.... ..++|+++|+|
T Consensus 50 -----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 50 -----NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp -----STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred -----CCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 11267899999999999988 45666899999999999987 2222222 232221 23689999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|+|+..
T Consensus 124 K~Dl~~ 129 (214)
T 2fh5_B 124 KQDIAM 129 (214)
T ss_dssp CTTSTT
T ss_pred CCCCCC
Confidence 999865
No 49
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.41 E-value=3.4e-13 Score=139.29 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=81.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+++|+++|++|+|||||+++|+.... ..+ ...|+|+......+.+.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-----~v~-----------~~pg~Tv~~~~~~~~~~------------------ 46 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-----RVG-----------NWPGVTVEKKTGEFLLG------------------ 46 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-----EEE-----------ECTTSSSEEEEEEEEET------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-----Ccc-----------CCCCceEEEEEEEEEEC------------------
Confidence 47899999999999999999954321 011 11256666555555553
Q ss_pred CCCeEEEEEcCCCCcccHHH---------H-HHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 88 EKGFLINLIDSPGHVDFSSE---------V-TAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~---------~-~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
+..++|+||||+.+|... + ...+ +.+|++|+|+|++. ......++.++.+.++|+++++||+|+
T Consensus 47 --~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl 122 (256)
T 3iby_A 47 --EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDI 122 (256)
T ss_dssp --TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHH
T ss_pred --CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhc
Confidence 679999999999888642 2 2233 68999999999988 344455667778889999999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 123 ~~ 124 (256)
T 3iby_A 123 AE 124 (256)
T ss_dssp HH
T ss_pred CC
Confidence 65
No 50
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.39 E-value=5.7e-13 Score=129.24 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=81.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
....+|+++|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~---------------- 57 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE----------------FQESTIGAAFFSQTLAVN---------------- 57 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT----------------TSCCCSCCSEEEEEEEET----------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC----------------cCCCCceeEEEEEEEEEC----------------
Confidence 446799999999999999999997532110 001112211111222221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHHc---CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
...+.++|+||||+.+|.......++.+|++|+|+|+++....+. ...+..+... ++|+++++||+|+..
T Consensus 58 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 58 --DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp --TEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred --CEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 135689999999999999989999999999999999988665333 3333444443 778999999999853
No 51
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.39 E-value=9.1e-13 Score=147.08 Aligned_cols=113 Identities=24% Similarity=0.309 Sum_probs=85.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
+.|+|+|.+|+|||||+++|+.....+... .-|+|.......+.|.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~---------------~~g~T~d~~~~~~~~~------------------- 47 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED---------------EEGVTRDPVQDTVEWY------------------- 47 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET-------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC---------------CCCCccceeeEEEEEC-------------------
Confidence 689999999999999999997543222211 2255655555666674
Q ss_pred CCeEEEEEcCCCCcc---------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVD---------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d---------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+..+++|||||... +...+..+++.+|++++|+|+..|.....+.+...+...++|+++++||+|..
T Consensus 48 -~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 48 -GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp -TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred -CeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 77899999999764 34567788999999999999999998888888887888899999999999975
No 52
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=129.32 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=80.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.|+|||||+++|+...-. .+....++.......+.+.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~----------------- 71 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELR----------------- 71 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEEC-----------------
Confidence 4678999999999999999999432100 0111112222222222231
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++|+|+|++++...+....| ..+.. .++|+++++||+|+..
T Consensus 72 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 72 -GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp -TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 1246899999999999999999999999999999999987655544333 23333 3789999999999864
No 53
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.39 E-value=6.2e-13 Score=130.71 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHH---------cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA---------ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~---------~~ip~iv~iNKiD~~~ 157 (755)
..+.++|+||||+.+|.......++.+|++|+|+|++++...+....+..+.. .++|+++|.||+|+..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 46789999999999999999999999999999999998776666555544433 4789999999999865
No 54
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.39 E-value=2e-13 Score=135.67 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=80.4
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
|+++.+...+|+++|+.|+|||||+++|+...-... + ...++.......+.+
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------~--------~~t~~~~~~~~~~~~------------ 52 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--------Y--------KATIGADFLTKEVMV------------ 52 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSS--------C--------CCCCSEEEEEEEEES------------
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCC--------C--------CCcccceEEEEEEEE------------
Confidence 556667789999999999999999999976421110 0 001111111112222
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HHH-------cCCceEEEEec
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AIA-------ERIKPVLFMNK 152 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~-------~~ip~iv~iNK 152 (755)
++..+.++|+||||+.+|.......++.+|++|+|+|++++...+....|.. +.. .++|+++++||
T Consensus 53 ------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 53 ------DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp ------SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred ------CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 1235789999999999998888888999999999999988754444333322 211 47899999999
Q ss_pred cchh
Q psy16810 153 MDRA 156 (755)
Q Consensus 153 iD~~ 156 (755)
+|+.
T Consensus 127 ~Dl~ 130 (207)
T 1vg8_A 127 IDLE 130 (207)
T ss_dssp TTSS
T ss_pred CCCc
Confidence 9986
No 55
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=129.70 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=78.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+...-. . . .....|.+... ..+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~-----~--------~~~t~~~~~~~--~~~~~~---------------- 73 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR-E-----N--------ISATLGVDFQM--KTLIVD---------------- 73 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEE--EEEEET----------------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC-c-----c--------CCCCccceeEE--EEEEEC----------------
Confidence 45689999999999999999999753210 0 0 00011222211 122221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+.+|.......++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+..
T Consensus 74 --~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 74 --GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp --TEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred --CEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 1357899999999999999999999999999999999987655443333 23332 3789999999999864
No 56
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.38 E-value=6.9e-13 Score=130.48 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=82.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+...+|+++|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~---------------- 61 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES----------------YISTIGVDFKIRTIELD---------------- 61 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC----------------CCCCSSEEEEEEEEEET----------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CCCcccceEEEEEEEEC----------------
Confidence 4578999999999999999999975321110 01122222222333332
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+... ++|+++++||+|+..
T Consensus 62 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 62 --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp --TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred --CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 1246899999999999999999999999999999999986543333323 333333 789999999999864
No 57
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=1e-12 Score=147.51 Aligned_cols=117 Identities=19% Similarity=0.258 Sum_probs=90.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
....+|+++|++|+|||||+++|+.....+.... .|+|.......+.+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~---------------~gtt~~~~~~~~~~~---------------- 241 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV---------------AGTTRDAVDTSFTYN---------------- 241 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEET----------------
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCC---------------CCeEEEEEEEEEEEC----------------
Confidence 3568999999999999999999975433222111 245555555555553
Q ss_pred cCCCCeEEEEEcCCC----------CcccHHH-HHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccc
Q psy16810 86 KNEKGFLINLIDSPG----------HVDFSSE-VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 86 ~~~~~~~i~lIDtPG----------h~df~~~-~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD 154 (755)
+..++|||||| +..|... ...+++.+|++|+|+|+++++..|+..++.++...++|+++|+||+|
T Consensus 242 ----~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 317 (456)
T 4dcu_A 242 ----QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWD 317 (456)
T ss_dssp ----TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred ----CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChh
Confidence 67999999999 4556544 44588999999999999999999999999999999999999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 318 l~~ 320 (456)
T 4dcu_A 318 AVD 320 (456)
T ss_dssp GSC
T ss_pred cCC
Confidence 864
No 58
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.38 E-value=3.6e-13 Score=131.07 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=61.7
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
++.+...+|+++|+.|+|||||+++|+...- . .+...+++.......+.+.
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~------------~----~~~~~t~~~~~~~~~~~~~------------- 53 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAF------------N----STFISTIGIDFKIRTIELD------------- 53 (183)
T ss_dssp CCCSEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEET-------------
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCC------------C----CCCCCcccceeEEEEEEEC-------------
Confidence 3445678999999999999999999953210 0 0111122222222222231
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH---cCCceEEEEeccchhh
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++|+|+|+++....+.. ..+..+.. .++|+++++||+|+..
T Consensus 54 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 54 -----GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp -----TEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred -----CEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 1247899999999999988888889999999999999886543332 23333443 3689999999999853
No 59
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.37 E-value=1.8e-12 Score=125.21 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=81.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
..+..+|+++|+.|+|||||+++|+...- ..+....+++......+.+.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~--------------- 51 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETF----------------GKQYKQTIGLDFFLRRITLP--------------- 51 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGT----------------THHHHHTTTSSEEEEEEEET---------------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcC----------------CCCCCCceeEEEEEEEEEeC---------------
Confidence 34567999999999999999999965311 01111222222222233332
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH-----cCCc-eEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA-----ERIK-PVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~-----~~ip-~iv~iNKiD~~~ 157 (755)
......++++||||+.+|.......++.+|++++|+|+++....+....| ..+.. .+.| ++++.||+|+..
T Consensus 52 --~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 52 --GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp --TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred --CCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 00137899999999999988888999999999999999986544333333 33333 2667 688999999864
No 60
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.37 E-value=1e-12 Score=137.30 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=81.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|++|+|||||+++|+.... . .+ ...|+|+......+.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~----v~-----------~~~g~t~~~~~~~~~~------------------- 47 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-R----VG-----------NWAGVTVERKEGQFST------------------- 47 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-E----EE-----------ECTTSSSEEEEEEEEC-------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-c----cC-----------CCCCeeEEEEEEEEEe-------------------
Confidence 36899999999999999999954321 0 01 1125566554444444
Q ss_pred CCCeEEEEEcCCCCcccHH---------HHHH---HhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccch
Q psy16810 88 EKGFLINLIDSPGHVDFSS---------EVTA---ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~---------~~~~---al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
.+..++||||||+.+|.. .+.+ ..+.+|++|+|+|++.. .....++.++.+.++|+++++||+|+
T Consensus 48 -~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 48 -TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDI 124 (274)
T ss_dssp -SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHH
T ss_pred -CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccc
Confidence 267899999999988762 1111 23689999999999872 34455667778889999999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 125 ~~ 126 (274)
T 3i8s_A 125 AE 126 (274)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 61
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.37 E-value=3.8e-12 Score=121.21 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=77.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
+|+++|+.|+|||||+++|+...- .+.. -|+......+.+ +
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~------------~~~~-------~t~~~~~~~~~~--------------------~ 42 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEY--------------------K 42 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS------------SCCC-------CCSSCCEEEEEC--------------------S
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc------------Cccc-------CcCceeEEEEEE--------------------C
Confidence 799999999999999999975321 1110 122212222333 3
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++.++++||||+.+|.......++.+|++++|+|+++.-..+. ...+..... .++|+++++||+|+..
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 6899999999999999888889999999999999987643222 222333322 3789999999999864
No 62
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.37 E-value=8.7e-13 Score=127.45 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=80.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
++.+..+|+++|+.|+|||||+++|+...-... ....+++......+.+.
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------------- 59 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----------------YQATIGIDFLSKTMYLE-------------- 59 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSS----------------CCCCCSEEEEEEEEEET--------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeeEEEEEEEEEC--------------
Confidence 344557999999999999999999975321100 00112222112222221
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHH-HHHHHH---cCCceEEEEeccchhh
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....+.|+||||+.+|.......++.+|++++|+|++.....+.... +..+.. .++|+++++||+|+..
T Consensus 60 ----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 60 ----DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp ----TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred ----CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 124689999999999999988999999999999999987543332222 222222 4789999999999864
No 63
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.36 E-value=3.4e-13 Score=151.29 Aligned_cols=115 Identities=22% Similarity=0.273 Sum_probs=84.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..++|+|+|++|+|||||+++|+...-.+. +...|.|.......+.|
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v---------------~~~~g~t~~~~~~~~~~------------------ 68 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEW------------------ 68 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTT------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc---------------CCCCCcceeEEEEEEEE------------------
Confidence 468999999999999999999954221111 11235555443333333
Q ss_pred CCCCeEEEEEcCCC--------CcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 87 NEKGFLINLIDSPG--------HVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 87 ~~~~~~i~lIDtPG--------h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.+..+++||||| +..|...+..+++.+|++|+|+|+..|.....+.+++.+.+.++|+++++||+|..
T Consensus 69 --~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 69 --LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp --CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred --CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 367899999999 66777888889999999999999999999999999999988999999999999985
No 64
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.36 E-value=1.1e-12 Score=126.87 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=80.9
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITN 80 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 80 (755)
|+....+..+|+++|+.|+|||||+++|+...- ......+ .+.+.. ..+.+.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t------------~~~~~~---~~~~~~----------- 53 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPT------------IEDSYT---KICSVD----------- 53 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTT------------CCEEEE---EEEEET-----------
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCC------------cCceEE---EEEEEC-----------
Confidence 444556788999999999999999999976421 1000000 011110 111221
Q ss_pred CCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH----HHHHHcCCceEEEEeccch
Q psy16810 81 PDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL----RQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 81 ~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~----~~~~~~~ip~iv~iNKiD~ 155 (755)
+....++|+||||+.+|.......++.+|++++|+|+++....... ..+ +.....++|+++++||+|+
T Consensus 54 -------~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 54 -------GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp -------TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred -------CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 1246899999999999988888899999999999999885432221 222 2223357899999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 127 ~~ 128 (181)
T 2fn4_A 127 ES 128 (181)
T ss_dssp GG
T ss_pred cc
Confidence 64
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.36 E-value=2.4e-12 Score=127.04 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHH-HHcCCceEEEEeccc
Q psy16810 91 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQA-IAERIKPVLFMNKMD 154 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~-~~~~ip~iv~iNKiD 154 (755)
..++|+||||+.+|...+...++.+|++|+|+|++.+...+....| ..+ ...++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999999999999999999999999999999987654443333 333 335689999999999
No 66
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.36 E-value=1.1e-12 Score=139.68 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=55.4
Q ss_pred CeEEEEEcCCCCcc-------------cHHHHHHHhhhcCcEEEEEcC-CCcceehH-HHHHHHHHHcCCceEEEEeccc
Q psy16810 90 GFLINLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDC-VSGVCVQT-ETVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 90 ~~~i~lIDtPGh~d-------------f~~~~~~al~~~D~ailVvda-~~g~~~qt-~~~~~~~~~~~ip~iv~iNKiD 154 (755)
+..++||||||+.+ |...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 57899999999864 666778899999999999997 66665444 4677777778999999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 210 l~~ 212 (315)
T 1jwy_B 210 LMD 212 (315)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 67
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.36 E-value=1.1e-12 Score=125.33 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=81.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
..+..+|+++|+.|+|||||+++|+...- .. . .+...|.+.. ...+.+.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~----------~--~~~~~~~~~~--~~~~~~~--------------- 51 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQF--HE----------F--QESTIGAAFL--TQTVCLD--------------- 51 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCC--CT----------T--CCCCSSEEEE--EEEEEET---------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCC--CC----------C--CCCccceEEE--EEEEEEC---------------
Confidence 34567999999999999999999975321 10 0 0001112111 1112221
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHHc---CCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
..++.++++||||+.+|.......++.+|++++|+|+++....+... .+..+... ++|++++.||+|+..
T Consensus 52 ---~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 52 ---DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp ---TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ---CEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 13678999999999999998999999999999999998865433332 33344433 678899999999864
No 68
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.36 E-value=1.8e-12 Score=125.23 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=81.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.++|||||+++|+....... ... ..|.+... ..+.+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~------------t~~~~~~~--~~~~~~---------------- 60 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPH------------TIGVEFGT--RIIEVS---------------- 60 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--CTT------------SCCCCEEE--EEEEET----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCC------------ccceEEEE--EEEEEC----------------
Confidence 4578999999999999999999976432110 000 01112111 111121
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
.....++|+||||+.+|.......++.+|++++|+|+..+...+....| ..+.. .++|+++++||+|+..
T Consensus 61 --~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 61 --GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp --TEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred --CeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 1356899999999999999999999999999999999987544443333 22332 5789999999999853
No 69
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.35 E-value=1.8e-12 Score=124.06 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=78.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.|+|||||+++|+...- . . +....++.......+.+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~--~----------~----~~~~~~~~~~~~~~~~~~----------------- 48 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKF--N----------P----SFITTIGIDFKIKTVDIN----------------- 48 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCC--C----------C-----------CCEEEEEEESS-----------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCC--C----------C----CCCCccceeEEEEEEEEC-----------------
Confidence 457999999999999999999975321 0 0 001112221111222221
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH---cCCceEEEEeccchh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA---ERIKPVLFMNKMDRA 156 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~ip~iv~iNKiD~~ 156 (755)
+..+.+.|+||||+.+|...+...++.+|++++|+|+++....+... .+..+.. .++|+++++||+|+.
T Consensus 49 -~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 49 -GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp -SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred -CEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 23568999999999999888888999999999999998865433322 2333333 378999999999984
No 70
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.3e-12 Score=129.94 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
|.+.+...+|+++|+.|+|||||+++|+...- .. ..+ ..+++......+.+.
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~--~~-~~~-------------~t~~~~~~~~~~~~~------------ 71 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLF--PP-GQG-------------ATIGVDFMIKTVEIN------------ 71 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSC--CT-TCC-------------CCCSEEEEEEEEEET------------
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCC--CC-CCC-------------CccceeEEEEEEEEC------------
Confidence 34445678999999999999999999965321 10 000 011121111222221
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++|+|+|++.....+...-| ..+.. .++|+++|+||+|+..
T Consensus 72 ------~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 72 ------GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp ------TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ------CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 1246899999999999998888999999999999999886543332223 33332 3689999999999864
No 71
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.35 E-value=1.6e-12 Score=124.58 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=80.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+... .. .. ..|+......+.|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~----------~~-------~~t~~~~~~~~~~----------------- 48 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE--VV----------TT-------IPTIGFNVETVTY----------------- 48 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS--CC----------CC-------CCCSSEEEEEEEE-----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--CC----------Cc-------CCcCccceEEEEE-----------------
Confidence 356899999999999999999996521 11 00 1122222223333
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+++...... ...+..... .++|+++++||+|+..
T Consensus 49 ---~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 49 ---KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp ---TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---CCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 37899999999999998888888999999999999987643222 222332322 5789999999999864
No 72
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.35 E-value=5.3e-13 Score=148.85 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=79.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
++|+|+|++|+|||||+++|+...-.+. +...|.|.+.....+.|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v---------------~~~~g~T~d~~~~~~~~-------------------- 48 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEW-------------------- 48 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTT--------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---------------cCCCCCccceEEEEEEE--------------------
Confidence 6899999999999999999954322111 11224454433333333
Q ss_pred CCeEEEEEcCCCCc--------ccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHV--------DFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~--------df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.+..+++|||||+. .|...+..+++.+|++|+|+|+.+|.......+++.+.+.++|+++++||+|...
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 36789999999996 5677788899999999999999999998888888888888999999999999853
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.35 E-value=2e-12 Score=126.62 Aligned_cols=126 Identities=20% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce---EEEEeeeCccccccccCC
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA---ISMYFELDDKDMVFITNP 81 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~---~~~~~~~~~~~~~~~~~~ 81 (755)
.+...+|+++|+.|+|||||+++|+...- .. .. .-|+.... ..+.+. + .+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-~~---------------~~t~~~~~~~~~~~~~~--~-------~~ 60 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKF--NS-KF---------------ITTVGIDFREKRVVYRA--N-------GP 60 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCC--CC-SC---------------CCCCSEEEEEEEEEECT--T-------SC
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCC--Cc-Cc---------------ccccceeeeeEEEEEec--C-------Cc
Confidence 34578999999999999999999975321 10 00 01111111 111111 0 00
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHH-HHHHHH----cCCceEEEEeccchh
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIA----ERIKPVLFMNKMDRA 156 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~~----~~ip~iv~iNKiD~~ 156 (755)
...........++|+||||+.+|.......++.+|++|+|+|+......+.... +..+.. .++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 61 DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp CCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred ccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 000011125789999999999999999999999999999999988765444333 333333 578999999999986
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 141 ~ 141 (195)
T 3bc1_A 141 D 141 (195)
T ss_dssp G
T ss_pred c
Confidence 4
No 74
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.35 E-value=2.7e-12 Score=126.75 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=79.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|..|+|||||+++|... ... +...+.+.........+.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~--~~~---------------~~~~~~~~~~~~~~~~~~---------------- 64 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK--MSP---------------NETLFLESTNKIYKDDIS---------------- 64 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC--CCG---------------GGGGGCCCCCSCEEEEEC----------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc--CCC---------------cceeeeccccceeeeecc----------------
Confidence 45679999999999999999977431 100 011122222222322221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHH---HHHhhhcCcEEEEEcCCCcceehHHHHHHHHHH-----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEV---TAALRVTDGALVVVDCVSGVCVQTETVLRQAIA-----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~---~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~-----~~ip~iv~iNKiD~~~ 157 (755)
++..+.++|+||||+.+|.... ...++.+|++|+|+|+++........+...+.+ .++|+++|.||+|+..
T Consensus 65 -~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 65 -NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp -CTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred -CCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 1246789999999999998777 789999999999999998733333333333333 3789999999999853
No 75
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.35 E-value=6e-12 Score=123.68 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=79.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+...- .. .+ ....|.|.... ...+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-------~~------~~~~~~t~~~~--~~~~----------------- 67 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKN-LA-------RT------SSKPGKTQTLN--FYII----------------- 67 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEE--EEEE-----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-cc-------cc------CCCCCceeeEE--EEEE-----------------
Confidence 3578999999999999999999965310 00 00 01112222211 1111
Q ss_pred cCCCCeEEEEEcCCC----------CcccHHHHHHHhhhc---CcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEec
Q psy16810 86 KNEKGFLINLIDSPG----------HVDFSSEVTAALRVT---DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNK 152 (755)
Q Consensus 86 ~~~~~~~i~lIDtPG----------h~df~~~~~~al~~~---D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNK 152 (755)
+..++++|||| +..|...+...++.+ |++++|+|+..+...+...+++.+...++|+++++||
T Consensus 68 ----~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 143 (195)
T 1svi_A 68 ----NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATK 143 (195)
T ss_dssp ----TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ----CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 23689999999 445555555566655 9999999999998888877888888899999999999
Q ss_pred cchhh
Q psy16810 153 MDRAL 157 (755)
Q Consensus 153 iD~~~ 157 (755)
+|+..
T Consensus 144 ~Dl~~ 148 (195)
T 1svi_A 144 ADKIP 148 (195)
T ss_dssp GGGSC
T ss_pred cccCC
Confidence 99854
No 76
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.35 E-value=3.9e-12 Score=126.28 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=79.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+...+|+++|+.|+|||||+++|+... .. + +....++.......+.+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~----------~----~~~~t~~~~~~~~~~~~~---------------- 74 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA--FS----------E----RQGSTIGVDFTMKTLEIQ---------------- 74 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC--C------------------------CEEEEEEEET----------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC--CC----------C----CCCCCcceEEEEEEEEEC----------------
Confidence 346899999999999999999996532 10 0 001111111111222221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+.+|.......++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+..
T Consensus 75 --~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 75 --GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp --TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred --CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 12468999999999999999999999999999999998765433322 2333333 4689999999999864
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.35 E-value=1.9e-12 Score=127.65 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=80.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
....+|+++|+.|+|||||+++|+...-.. .++ .-|+......+.+
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------~~~-------~~t~~~~~~~~~~----------------- 60 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSS----------KHI-------TATVGYNVETFEK----------------- 60 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC--------------CC-------CCCSSEEEEEEEE-----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcc----------ccc-------ccccceeEEEEEe-----------------
Confidence 457899999999999999999994321110 000 0122211122222
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHHc-----------CCceEEEEecc
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE-----------RIKPVLFMNKM 153 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~~-----------~ip~iv~iNKi 153 (755)
.++.++|+||||+.+|.......++.+|++|+|+|++++...+.. ..+..+... ++|+++|+||+
T Consensus 61 ---~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~ 137 (199)
T 4bas_A 61 ---GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKM 137 (199)
T ss_dssp ---TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECT
T ss_pred ---CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECc
Confidence 478999999999999998888899999999999999987543332 333444333 89999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 138 Dl~~ 141 (199)
T 4bas_A 138 DAAG 141 (199)
T ss_dssp TSTT
T ss_pred CCCC
Confidence 9965
No 78
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=1.8e-12 Score=125.53 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=74.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+...-.... ....+++......+.+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------------~~~t~~~~~~~~~~~~~---------------- 56 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT---------------FISTVGIDFRNKVLDVD---------------- 56 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC---------------CCCCCSCEEEEEEEEET----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC---------------cCCceeeEEEEEEEEEC----------------
Confidence 45689999999999999999999764221110 00111111111111221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHH-HHHHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+..+.++++||||+.+|.......++.+|++++|+|++++...+.... +..+.. .++|+++++||+|+..
T Consensus 57 --~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 57 --GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp --TEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred --CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 124689999999999999888889999999999999998654433222 233333 5789999999999864
No 79
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=4.3e-12 Score=121.26 Aligned_cols=116 Identities=20% Similarity=0.180 Sum_probs=79.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~------------------ 48 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAEN----------------KEPTIGAAFLTQRVTIN------------------ 48 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT----------------CCCCSSEEEEEEEEEET------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEEEC------------------
Confidence 36899999999999999999975321100 00011111111122221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||||+.+|.......++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+..
T Consensus 49 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 49 EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 1356899999999999999999999999999999999986544433323 23322 3789999999999975
No 80
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.34 E-value=5.9e-12 Score=121.70 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=77.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+++|++|+|||||+++|............ |.|.......+.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~-------------------- 49 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIA---------------GTTRDVLREHIHI-------------------- 49 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSST---------------TCCCSCEEEEEEE--------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCC---------------CceeceeeEEEEE--------------------
Confidence 57999999999999999999653321111111 2232222223333
Q ss_pred CCeEEEEEcCCCCcccHH--------HHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc---CCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSS--------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~--------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
++..+.++||||+.++.. .+...++.+|++++|+|++.....+....|..+... ++|+++++||+|+..
T Consensus 50 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 50 DGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred CCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 256799999999976421 123467899999999999987765555555555443 689999999999853
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.34 E-value=1.3e-12 Score=124.68 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=79.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+... ... ... ..++.......+.+.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-~~~-------------~t~~~~~~~~~~~~~---------------- 50 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGI--FTK-DYK-------------KTIGVDFLERQIQVN---------------- 50 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCC--CCC-CSS-------------CCCSSSEEEEEEEET----------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCC--CCC-CCC-------------CceEEEEEEEEEEEC----------------
Confidence 456799999999999999999997531 110 000 001111111122221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||||+.+|.......++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+..
T Consensus 51 --~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 51 --DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp --TEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred --CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 1256899999999999988888899999999999999886533332222 22322 4889999999999864
No 82
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.34 E-value=9.3e-12 Score=122.03 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=79.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.|+|||||+++|+...-...... .|.|... .+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~---------------~~~t~~~---~~~~------------------ 65 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKT---------------PGKTRSI---NFYL------------------ 65 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSS---------------CCCCCCE---EEEE------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCC---------------CCCccCe---EEEE------------------
Confidence 457999999999999999999976431111101 1222211 1111
Q ss_pred CCCCeEEEEEcCCC----------CcccHHHHHHHhh---hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEecc
Q psy16810 87 NEKGFLINLIDSPG----------HVDFSSEVTAALR---VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKM 153 (755)
Q Consensus 87 ~~~~~~i~lIDtPG----------h~df~~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKi 153 (755)
.+..+.++|||| +..|...+...++ .+|++++|+|+..+.......+++.+...++|+++++||+
T Consensus 66 --~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 143 (195)
T 3pqc_A 66 --VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKM 143 (195)
T ss_dssp --ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred --ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECh
Confidence 134688999999 3334444444444 4599999999999888888888888888999999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 144 Dl~~ 147 (195)
T 3pqc_A 144 DKVK 147 (195)
T ss_dssp GGSC
T ss_pred hcCC
Confidence 9853
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.34 E-value=2e-12 Score=127.08 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=79.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|.... .. . ...|+......+.+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~--~~----------~-------~~~t~~~~~~~~~~------------------ 64 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDR--LA----------T-------LQPTWHPTSEELAI------------------ 64 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSC--CC----------C-------CCCCCSCEEEEEEE------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC--CC----------c-------cccCCCCCeEEEEE------------------
Confidence 45689999999999999999996532 11 0 01122222333444
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|++++...+. ...+.... ..++|++++.||+|+..
T Consensus 65 --~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 65 --GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp --TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred --CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 36899999999999988777788899999999999998753332 22233332 25789999999999965
No 84
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.34 E-value=2.4e-12 Score=127.62 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+...+|+++|+.|+|||||+++|+...-... +. ...|.+... ..+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------~~------~t~~~~~~~--~~~~~----------------- 52 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPA--------FV------STVGIDFKV--KTIYR----------------- 52 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSC--------CC------CCCSEEEEE--EEEEE-----------------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC--------cC------CccceeEEE--EEEEE-----------------
Confidence 4578999999999999999999964321000 00 001122111 11111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+.....++|+||||+.+|.......++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+..
T Consensus 53 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 53 -NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp -TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred -CCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 11357899999999999999999999999999999999886543333333 33433 3789999999999864
No 85
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.33 E-value=1.3e-12 Score=130.05 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=83.0
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
+.+...+|+++|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~-------------- 53 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTND----------------YISTIGVDFKIKTVELD-------------- 53 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTT----------------CCCSSCCCEEEEEEEET--------------
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEEC--------------
Confidence 445678999999999999999999965321100 00112222122222231
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++|+|+|++.....+....| ..+.. .++|+++|+||+|+..
T Consensus 54 ----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 54 ----GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp ----TEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred ----CEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 1246899999999999988888889999999999999987654443333 33333 3589999999999864
No 86
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.33 E-value=2.2e-12 Score=133.33 Aligned_cols=114 Identities=23% Similarity=0.321 Sum_probs=82.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|++|+|||||+++|+...-. .+ ...|+|+......+.+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-----~~-----------~~pg~tv~~~~~~~~~----------------- 49 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-----VA-----------NWPGVTVEKKEGVFTY----------------- 49 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-----EE-----------ECTTSCCEEEEEEEEE-----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-----cc-----------CCCCceEEEEEEEEEE-----------------
Confidence 34678999999999999999999542110 11 1126677655555554
Q ss_pred cCCCCeEEEEEcCCCCcccHH-----HH-HHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSS-----EV-TAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~-----~~-~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..++|+||||+.+|.. .+ ...+ ..+|++++|+|++... .....+.++.+.++|+++++||+|+..
T Consensus 50 ---~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 50 ---KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp ---TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred ---CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 368999999999988753 12 2223 4789999999998742 334466777888999999999999864
No 87
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.33 E-value=5.7e-12 Score=120.76 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=75.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|+.|+|||||+++|+...-. .+ ...|+|+......+.+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-----~~-----------~~~~~t~~~~~~~~~~~------------------ 48 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-----IG-----------NWPGVTVEKKEGEFEYN------------------ 48 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-----CC----------------CCCCCEEEEEET------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-----cc-----------CCCCcceeeeEEEEEEC------------------
Confidence 478999999999999999999532110 00 01244554444444442
Q ss_pred CCCeEEEEEcCCCCcccH------HHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFS------SEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~------~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+..++++||||+.+|. .-....++ .+|++++|+|+... .+....+..+.+.++|++++.||+|+..
T Consensus 49 --~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 49 --GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp --TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred --CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 6789999999998874 11233333 78999999999862 2233344556667999999999999864
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.33 E-value=4.9e-12 Score=123.96 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=80.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+...-... . .-|+......+.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~-------~~t~~~~~~~~~~----------------- 64 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED-----------M-------IPTVGFNMRKITK----------------- 64 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------C-------CCCCSEEEEEEEE-----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc-----------c-------CCCCceeEEEEEe-----------------
Confidence 3467999999999999999999975321100 0 0122211122222
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
.++.++|+||||+.+|.......++.+|++|+|+|+++.-..+. ...+..+.. .++|+++|+||+|+..
T Consensus 65 ---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 65 ---GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp ---TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred ---CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 37899999999999999888999999999999999987543322 222333322 5789999999999864
No 89
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.33 E-value=4.3e-12 Score=123.35 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=78.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce-EEEEeeeCccccccccCCCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA-ISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+..+|+++|+.|+|||||+++|+... ...... -|+.... ....+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~----------------~t~~~~~~~~~~~---------------- 61 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYD----------------PTIEDSYLKHTEI---------------- 61 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCC----------------TTCCEEEEEEEEE----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCCCCC----------------CCccceeEEEEEe----------------
Confidence 346799999999999999999997531 110000 0111111 11111
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-----HHHHHHHHcCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-----TVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..+.++++||||+.+|.......++.+|++++|+|++++...+.. .+.+.....++|+++++||+|+..
T Consensus 62 --~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 62 --DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp --TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred --CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 12346788899999999998889999999999999999986433222 222333346789999999999854
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.32 E-value=3.4e-12 Score=125.20 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=79.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|+........ ...|+......+.+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~------------------ 64 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKS------------------ 64 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEEC------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEE------------------
Confidence 4579999999999999999999543211110 01122212222333
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH------cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA------ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~------~~ip~iv~iNKiD~~~ 157 (755)
++..+.|+||||+.+|.......++.+|++++|+|+++....+. ...+..+.. .++|+++|+||+|+..
T Consensus 65 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 65 --SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp --SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred --CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 26799999999999998888889999999999999988643222 223333332 4789999999999964
No 91
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.32 E-value=5.2e-12 Score=129.01 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
...++|+++|++|+|||||+++|+...-... ....+++|.......+.|.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~---------------- 76 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHS--------------GTAAKSITKKCEKRSSSWK---------------- 76 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCcc--------------CCCCCceeeeEEEEEEEeC----------------
Confidence 3578999999999999999999965322111 1122345555555555553
Q ss_pred cCCCCeEEEEEcCCCCccc-------HHHHHH----HhhhcCcEEEEEcCCCcceehHHHHHHHH-H----HcCCceEEE
Q psy16810 86 KNEKGFLINLIDSPGHVDF-------SSEVTA----ALRVTDGALVVVDCVSGVCVQTETVLRQA-I----AERIKPVLF 149 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df-------~~~~~~----al~~~D~ailVvda~~g~~~qt~~~~~~~-~----~~~ip~iv~ 149 (755)
+..++||||||+.+. ..++.+ +.+.+|++|+|+|+.... ......+..+ . ....|+++|
T Consensus 77 ----~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~l~~~~~~~~~~~~~~~iiv 151 (239)
T 3lxx_A 77 ----ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT-EEEHKATEKILKMFGERARSFMILI 151 (239)
T ss_dssp ----TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS-SHHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred ----CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC-HHHHHHHHHHHHHhhhhccceEEEE
Confidence 789999999997653 223333 344569999999987533 3333333322 2 234599999
Q ss_pred Eeccchhh
Q psy16810 150 MNKMDRAL 157 (755)
Q Consensus 150 iNKiD~~~ 157 (755)
+||+|+..
T Consensus 152 ~nK~D~~~ 159 (239)
T 3lxx_A 152 FTRKDDLG 159 (239)
T ss_dssp EECGGGC-
T ss_pred EeCCccCC
Confidence 99999854
No 92
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.32 E-value=7.1e-12 Score=121.85 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 4 ~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
+..+..+|+++|+.|+|||||+++|+... .......++ +.+. ...+.+.
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~------------~~~~---~~~~~~~-------------- 62 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTK------------ADSY---RKKVVLD-------------- 62 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTC------------CEEE---EEEEEET--------------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCcc------------ceEE---EEEEEEC--------------
Confidence 34467899999999999999999997532 110000000 0000 1111121
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH----HcCCceEEEEeccchhh
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
+..+.+.|+||||+.+|.......++.+|++++|+|+.+....+....| ..+. ..++|+++++||+|+..
T Consensus 63 ----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 63 ----GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp ----TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred ----CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1246899999999999999999999999999999999875433322222 2222 23789999999999864
No 93
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=2.8e-12 Score=125.84 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=80.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.++|||||+++|+...-... + ....|.+.. ...+.+.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------~------~~t~~~~~~--~~~~~~~----------------- 60 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE--------L------AATIGVDFK--VKTISVD----------------- 60 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------C------CCCCSEEEE--EEEEEET-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc--------C------CCccceEEE--EEEEEEC-----------------
Confidence 457999999999999999999965321100 0 000111111 1122221
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH----cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
...+.+.|+||||+.+|.......++.+|++|+|+|+......+....| ..+.. .++|+++++||+|+..
T Consensus 61 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 61 -GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp -TEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred -CeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 1357899999999999988889999999999999999887544443333 33333 3679999999999843
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=5.7e-12 Score=123.24 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=77.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+...-. . + .-|+......+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~--------~----------~~t~~~~~~~~~~----------------- 57 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-H--------T----------SPTIGSNVEEIVI----------------- 57 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-E--------E----------ECCSCSSCEEEEE-----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-c--------C----------cCCCccceEEEEE-----------------
Confidence 35679999999999999999999642110 0 0 0122222223333
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|++++...+. ...+..+.. .++|+++++||+|+..
T Consensus 58 ---~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 58 ---NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp ---TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred ---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 36899999999999998888889999999999999988743222 223333333 5789999999999864
No 95
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.32 E-value=8.4e-12 Score=118.85 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=75.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|+... .......+ .+.+. ...+.+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~t------------~~~~~---~~~~~~~----------------- 48 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPT------------KADSY---RKKVVLD----------------- 48 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTT------------CCEEE---EEEEEET-----------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc--cCCCCCCC------------cceEE---EEEEEEC-----------------
Confidence 45799999999999999999997632 11000000 00000 1111121
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHH-HHHHHH----cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++++|+|+.+......... +..+.. .++|+++++||+|+..
T Consensus 49 -~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 49 -GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp -TEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 134689999999999999999999999999999999987543332222 222222 3789999999999864
No 96
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.32 E-value=1.6e-12 Score=127.36 Aligned_cols=118 Identities=21% Similarity=0.199 Sum_probs=78.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~---------------- 65 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR----------------TEATIGVDFRERAVDID---------------- 65 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS----------------CCCCCSCCEEEEEEEET----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCCcceEEEEEEEEEC----------------
Confidence 3568999999999999999999975321100 00111111111222221
Q ss_pred cCCCCeEEEEEcCCCCcccH-HHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH----HcCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFS-SEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~-~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+.+|. ......++.+|++|+|+|+++....+...-| ..+. ..++|+++++||+|+..
T Consensus 66 --~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 66 --GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp --TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred --CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 124789999999999988 6677788999999999999876443332222 2222 34789999999999864
No 97
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.32 E-value=1.9e-12 Score=128.39 Aligned_cols=118 Identities=21% Similarity=0.204 Sum_probs=78.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~---------------- 70 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNVG---------------- 70 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEET----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEEC----------------
Confidence 457899999999999999999996421100 001111211111222221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 71 --~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 71 --GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp --TEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred --CeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 1247899999999998887788899999999999999986644443333 23332 3789999999999864
No 98
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.32 E-value=5.9e-12 Score=119.80 Aligned_cols=114 Identities=20% Similarity=0.215 Sum_probs=77.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhcccccc-ceEEEEeeeCccccccccCCCcccc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKS-TAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
..+|+++|+.|+|||||+++|+...- ...... |+.. ....+.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~----------------~~~~~~~~~~~~------------------ 46 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTF--IEKYDP----------------TIEDFYRKEIEV------------------ 46 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCT----------------TCCEEEEEEEEE------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--cccCCC----------------CcceeEEEEEEE------------------
Confidence 36899999999999999999975321 100000 1100 0111111
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHH----HHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQA----IAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~----~~~~ip~iv~iNKiD~~~ 157 (755)
++....++|+||||+.+|.......++.+|++++|+|+++....+. ...+..+ ...++|+++++||+|+..
T Consensus 47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 47 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 1134679999999999999999999999999999999998543322 2222222 224789999999999854
No 99
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.31 E-value=2e-12 Score=123.80 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=73.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.++..+|+++|+.|+|||||+++|+...-... . ...++.......+.+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------~----------~~t~~~~~~~~~~~~---------------- 50 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDK------H----------ITTLGASFLTKKLNI---------------- 50 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS------C----------CCCCSCEEEEEEEES----------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcC------C----------CCccceEEEEEEEEE----------------
Confidence 34567999999999999999999975321100 0 001111111111111
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH---HcCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI---AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~ip~iv~iNKiD~~~ 157 (755)
++..+.+.++||||+.+|.......++.+|++++|+|+++....+....| ..+. ..++|+++++||+|+..
T Consensus 51 --~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 51 --GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp --SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred --CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 12356899999999999988888888999999999999886543333322 2222 25789999999999864
No 100
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=2.3e-12 Score=128.66 Aligned_cols=116 Identities=21% Similarity=0.174 Sum_probs=79.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.++|||||+++|+...-... ....++.......+.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~----------------- 65 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS----------------FITTIGIDFKIKTVDIN----------------- 65 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCS----------------SSCCCSCCEEEEEEEET-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcc----------------cCCcccceEEEEEEEEC-----------------
Confidence 467999999999999999999975321000 00112222222223331
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHHc---CCceEEEEeccchh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLFMNKMDRA 156 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~~---~ip~iv~iNKiD~~ 156 (755)
+..+.+.|+||||+.+|...+...++.+|++|+|+|+.++...+.. ..+..+... ++|+++|+||+|+.
T Consensus 66 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 66 -GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp -TEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred -CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 1236899999999999988888899999999999999886543332 223333332 78999999999984
No 101
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=125.86 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=80.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+...-.... ....|.+... ..+.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~--~~~~~----------------- 69 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFST--RTVML----------------- 69 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEE--EEEEE-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEE--EEEEE-----------------
Confidence 45689999999999999999999764221110 0001111111 11111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
......++|+||||+.+|.......++.+|++|+|+|+......+... .+..+.. .++|+++++||+|+..
T Consensus 70 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 70 -GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp -TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred -CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 123578999999999999888899999999999999998865433322 2333333 3689999999999964
No 102
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=3.8e-12 Score=125.16 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=81.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+...-... +. ...|.+... ..+.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------~~------~~~~~~~~~--~~~~~----------------- 67 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN--------IS------PTIGASFMT--KTVPC----------------- 67 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT--------CC------CCSSEEEEE--EEEEC-----------------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC--------cC------CCcceeEEE--EEEEe-----------------
Confidence 4567999999999999999999975321000 00 001122111 11111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
+.....++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+... ++|+++|+||+|+..
T Consensus 68 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 68 -GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp -SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 12467899999999999999899999999999999999886544433333 333333 789999999999863
No 103
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.31 E-value=2.3e-12 Score=126.57 Aligned_cols=118 Identities=21% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
....+|+++|+.|+|||||+++|+...-... .....|.+. ....+.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~--~~~~~~~~---------------- 66 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEF--GARMVNID---------------- 66 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSE--EEEEEEET----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCccccee--EEEEEEEC----------------
Confidence 4467999999999999999999975321110 000111111 11222221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH---cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....++|+||||+.+|.......++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+..
T Consensus 67 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 67 --GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp --TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred --CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 12468999999999999888888999999999999998865444332 3333433 3789999999999864
No 104
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.31 E-value=7.9e-12 Score=123.73 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=77.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|... ... . ..-|+......+.+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~--~~~----------~-------~~~t~~~~~~~~~~------------------ 66 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD--RLG----------Q-------HVPTLHPTSEELTI------------------ 66 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEE------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC--CCC----------c-------cCCCCCceeEEEEE------------------
Confidence 4568999999999999999999321 110 0 01122222334444
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHH----HcCCceEEEEeccchhhhccc
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAI----AERIKPVLFMNKMDRALLELQ 161 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~ip~iv~iNKiD~~~~~~~ 161 (755)
++..++++||||+.+|.......++.+|++++|+|+++....+. ...+.... ..++|++++.||+|+.. .
T Consensus 67 --~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~ 141 (198)
T 1f6b_A 67 --AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---A 141 (198)
T ss_dssp --TTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---C
T ss_pred --CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---c
Confidence 26899999999999988777788899999999999988643322 22223232 25789999999999965 2
Q ss_pred CCHHHHH
Q psy16810 162 LDAEDLY 168 (755)
Q Consensus 162 ~~~~~~~ 168 (755)
.+.+++.
T Consensus 142 ~~~~~~~ 148 (198)
T 1f6b_A 142 ISEERLR 148 (198)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 3444443
No 105
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.31 E-value=4.8e-12 Score=131.24 Aligned_cols=115 Identities=22% Similarity=0.232 Sum_probs=76.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|++|+|||||+++|+......... ..+.|+......+.+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~------------------ 81 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP---------------FQAEGLRPVMVSRTM------------------ 81 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS---------------SCC-CCCCEEEEEEE------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcceeeEEEEEEE------------------
Confidence 56899999999999999999997643322111 123345444455555
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHH---hh------hcCcEEEEEcCCCc-ceehHHHHHHHHHHc-C----CceEEEEe
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAA---LR------VTDGALVVVDCVSG-VCVQTETVLRQAIAE-R----IKPVLFMN 151 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~a---l~------~~D~ailVvda~~g-~~~qt~~~~~~~~~~-~----ip~iv~iN 151 (755)
++..++|||||||.+|....... ++ .+|++++|+|.... ........++.+... + .|+++++|
T Consensus 82 --~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 159 (262)
T 3def_A 82 --GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLT 159 (262)
T ss_dssp --TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred --CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEe
Confidence 37899999999998875332222 22 77999999877643 333344555555443 3 38999999
Q ss_pred ccchh
Q psy16810 152 KMDRA 156 (755)
Q Consensus 152 KiD~~ 156 (755)
|+|+.
T Consensus 160 K~Dl~ 164 (262)
T 3def_A 160 HAQFS 164 (262)
T ss_dssp CTTCC
T ss_pred CcccC
Confidence 99984
No 106
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.30 E-value=3.5e-12 Score=121.99 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=80.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+...-... + ....|.+.. ...+.+.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------~------~~~~~~~~~--~~~~~~~---------------- 51 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPN--------I------NPTIGASFM--TKTVQYQ---------------- 51 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTT--------C------CCCCSEEEE--EEEEEET----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC--------C------CCceeEEEE--EEEEEEC----------------
Confidence 3567999999999999999999975321000 0 001111211 1112221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
.....+.++||||+.+|.......++.+|++++|+|+++....+....| ..+... ++|++++.||+|+..
T Consensus 52 --~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 52 --NELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp --TEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred --CeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 1357899999999999998888999999999999999987654443333 444433 568899999999864
No 107
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.30 E-value=2e-12 Score=126.66 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=81.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+...+|+++|+.|+|||||+++|+...-... +. ...|.+... ..+.+
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------~~------~t~~~~~~~--~~~~~----------------- 66 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--------FV------STVGIDFKV--KTVYR----------------- 66 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------CC------CCCCCEEEE--EEEEE-----------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC--------cC------CceeEEEEE--EEEEE-----------------
Confidence 3468999999999999999999975321100 00 011222211 11111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHHc---CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
+.....++|+||||+.+|.......++.+|++|+|+|+++....+.. ..+..+... ++|+++|+||+|+..
T Consensus 67 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 67 -HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp -TTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred -CCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 11357899999999999988888899999999999999876543333 333444443 789999999999864
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=8.1e-12 Score=121.99 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=78.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|+...- .. +...++|+......+.+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-~~---------------~~~~~~t~~~~~~~~~~------------------ 51 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV-YI---------------GNWPGVTVEKKEGEFEY------------------ 51 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE-EE---------------EECTTSCCEEEEEEEEE------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-cc---------------cCCCCeeccceEEEEEe------------------
Confidence 457999999999999999999964210 00 01124454444444444
Q ss_pred CCCCeEEEEEcCCCCcccH------HHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFS------SEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~------~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|. .-....++ .+|++++|+|+... .+....+..+...++|++++.||+|+..
T Consensus 52 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 52 --NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp --TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred --CCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 36899999999999884 12233333 48999999998762 2334455566678899999999999864
No 109
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.30 E-value=4.4e-12 Score=123.78 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=80.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+... .. +.. -|+......+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~----------~~~-------~t~~~~~~~~~~----------------- 59 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD----------TIS-------PTLGFNIKTLEH----------------- 59 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS----------SCC-------CCSSEEEEEEEE-----------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC----------ccc-------ccCccceEEEEE-----------------
Confidence 356899999999999999999995432 11 000 122211223333
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+++....+. ...+..... .++|+++++||+|+..
T Consensus 60 ---~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 60 ---RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp ---TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 36899999999999998888888999999999999988654332 233333333 4789999999999864
No 110
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.29 E-value=2.3e-12 Score=129.31 Aligned_cols=128 Identities=18% Similarity=0.136 Sum_probs=80.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.++|||||+++|+...- . . +....+++......+.+...... ...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~----------~----~~~~t~~~~~~~~~~~~~~~~~~--------~~~ 78 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF--N----------P----KFITTVGIDFREKRVVYNAQGPN--------GSS 78 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC--C----------C----EEEEEEEEEEEEEEEEEEC---------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC--C----------c----CCCCceeEEEEEEEEEECCcccc--------ccc
Confidence 4568999999999999999999964211 0 0 00001111111112222200000 000
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~----~~ip~iv~iNKiD~~~ 157 (755)
.......++|+||||+.+|.......++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+..
T Consensus 79 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred cCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 00115789999999999999999999999999999999988655444333322 211 4689999999999864
No 111
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.29 E-value=1.4e-11 Score=119.94 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=79.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|... ... . .....|.+ ...+.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~--~~~----------~---~~~t~g~~----~~~~~~----------------- 57 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE--DIS----------H---ITPTQGFN----IKSVQS----------------- 57 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS--CCE----------E---EEEETTEE----EEEEEE-----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--CCC----------c---ccCcCCeE----EEEEEE-----------------
Confidence 56789999999999999999999432 000 0 00011211 122333
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+++....+. ...+.... ..++|++++.||+|+..
T Consensus 58 ---~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 58 ---QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp ---TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred ---CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 36899999999999999988999999999999999987643332 22222222 24789999999999864
No 112
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.29 E-value=7.1e-12 Score=143.10 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCcc-----------cHHHHHHHhhhcCcEEEEEcCCC-cceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 91 FLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVS-GVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 91 ~~i~lIDtPGh~d-----------f~~~~~~al~~~D~ailVvda~~-g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..+++.+...+.|+++|+||+|+..
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 4689999999986 77888889999999999999988 6778888888888888899999999999853
No 113
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=1.5e-12 Score=127.83 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=82.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+...+|+++|+.|+|||||+++|+...-... . ....|++.. ...+.+
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------~--------~~t~~~~~~--~~~~~~---------------- 67 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA------F--------VSTVGIDFK--VKTVYR---------------- 67 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCC------E--------EEEETTTEE--EEEEEE----------------
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc------c--------CCCeeeEEE--EEEEEE----------------
Confidence 34568999999999999999999976421110 0 000122221 112222
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH---cCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+...+.++|+||||+.+|.......++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 68 --~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 68 --HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp --TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred --CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 12468899999999999999999999999999999999875443332 23334444 4789999999999854
No 114
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.29 E-value=2e-11 Score=127.49 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=76.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...||+++|++|+|||||+++|+........ ..+ .......++++......+.+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~-~~~-------~~~~~~~t~~~~~~~~~~~~~----------------- 61 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPG-------PSHRIKKTVQVEQSKVLIKEG----------------- 61 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccC-CCC-------cccccCCceEEEEEEEEEecC-----------------
Confidence 3579999999999999999998543221110 000 001112334443333333221
Q ss_pred CCCCeEEEEEcCCCCccc-------HHHH-------HHHhhh-------------cCcEEEEEcCC-CcceehHHHHHHH
Q psy16810 87 NEKGFLINLIDSPGHVDF-------SSEV-------TAALRV-------------TDGALVVVDCV-SGVCVQTETVLRQ 138 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df-------~~~~-------~~al~~-------------~D~ailVvda~-~g~~~qt~~~~~~ 138 (755)
+....+++|||||+.|+ ..-+ ...++. +|+++++|+.. .+.......+++.
T Consensus 62 -~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~ 140 (274)
T 3t5d_A 62 -GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 140 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred -CeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence 12458999999999543 1111 333433 67888888655 4888888888888
Q ss_pred HHHcCCceEEEEeccchh
Q psy16810 139 AIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 139 ~~~~~ip~iv~iNKiD~~ 156 (755)
+.. ++|+|+|+||+|+.
T Consensus 141 l~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 141 LHE-KVNIIPLIAKADTL 157 (274)
T ss_dssp HTT-TSCEEEEESSGGGS
T ss_pred Hhc-cCCEEEEEeccCCC
Confidence 777 89999999999984
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.29 E-value=8.2e-12 Score=122.94 Aligned_cols=113 Identities=21% Similarity=0.190 Sum_probs=74.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+.. ... +. . -|+......+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~--~~~----------~~---~----~t~~~~~~~~~~----------------- 70 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG--EIV----------TT---I----PTIGFNVETVEY----------------- 70 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS--CCE----------EE---E----EETTEEEEEEEE-----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC--Ccc----------cc---C----CcCceeEEEEEE-----------------
Confidence 34678999999999999999999421 110 00 0 122211222333
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+++....+.. ..+..... .++|+++++||+|+..
T Consensus 71 ---~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 71 ---KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp ---TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 378999999999999988888899999999999999886433322 22333322 3789999999999864
No 116
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.29 E-value=1.6e-11 Score=116.94 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=77.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|+.|+|||||+++|+... ...... -|+... ....+. .+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~----------------~t~~~~-~~~~~~----------------~~ 47 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGI--FVEKYD----------------PTIEDS-YRKQVE----------------VD 47 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC--CCCSCC----------------CCSEEE-EEEEEE----------------SS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC--CCCCCC----------------CCccce-EEEEEE----------------EC
Confidence 4689999999999999999997521 110000 011100 001111 12
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHH----HcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++++|+|+++....+.. ..+..+. ..++|+++++||+|+..
T Consensus 48 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 2467899999999999999899999999999999999875432221 2222222 24789999999999864
No 117
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=121.56 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=79.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+... ......++ .+.+. ...+.+.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t------------~~~~~---~~~~~~~---------------- 58 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPT------------KADSY---RKKVVLD---------------- 58 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTT------------CCEEE---EEEEEET----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCc------------cceEE---EEEEEEC----------------
Confidence 356899999999999999999997542 11000000 00000 1112221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+..+.+.|+||||+.+|.......++.+|++++|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 59 --~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 59 --GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp --TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred --CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 1246899999999999999999999999999999999875433332222 22222 3789999999999864
No 118
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=9e-12 Score=119.28 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=77.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|+.|+|||||+++|+... .... +. .|+...... .+. .+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~------~~----------~t~~~~~~~-~~~----------------~~ 47 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGT--FRES------YI----------PTVEDTYRQ-VIS----------------CD 47 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC--CCSS------CC----------CCSCEEEEE-EEE----------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCC------CC----------CCccccEEE-EEE----------------EC
Confidence 4689999999999999999996421 1100 00 011100000 010 01
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceeh-HHHHHHHHHH-----cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA-----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~~-----~~ip~iv~iNKiD~~~ 157 (755)
...+.++++||||+.+|.......++.+|++++|+|+++..... ....+..+.+ .++|+++++||+|+..
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 48 KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 13568999999999999999999999999999999998754322 2334444443 3789999999999864
No 119
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.27 E-value=9.3e-12 Score=121.37 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=75.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|+...- .....++ +.......+.+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t---------------~~~~~~~~~~~------------------ 47 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPT---------------IEDSYRKQVVI------------------ 47 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTT---------------CCEEEEEEEEE------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC---------------chheEEEEEEE------------------
Confidence 456899999999999999999975321 1101110 00000111111
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH----cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++..+.++|+||||+.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++++||+|+..
T Consensus 48 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 11346788999999999999999999999999999999876443332222 22222 4789999999999863
No 120
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.27 E-value=6.5e-12 Score=122.18 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=79.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|+...- . .+ .-|+......+.+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~-------~~----------~~t~~~~~~~~~~------------------ 62 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--V-------HT----------SPTIGSNVEEIVI------------------ 62 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--E-------EE----------ECCSSSSCEEEEE------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C-------cc----------CCcCceeeEEEEE------------------
Confidence 457999999999999999999965311 0 00 0111111223333
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+++....+. ...+..... .++|+++++||+|+..
T Consensus 63 --~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 63 --NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp --TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred --CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 36899999999999998888888999999999999998643332 233333332 5789999999999864
No 121
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.27 E-value=4.3e-12 Score=128.04 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=79.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+...+|+++|+.++|||||+++|+...-... ....+++......+.+.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~---------------- 58 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD----------------SKSTIGVEFATRTLEIE---------------- 58 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET----------------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEEC----------------
Confidence 4568999999999999999999975321110 00111221111222221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
+..+.+.|+||||+.+|.......++.+|++|+|+|++++...+....| ..+... ++|+++|+||+|+..
T Consensus 59 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 59 --GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp --TEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred --CEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 1247899999999999988888889999999999999987654443333 333333 789999999999864
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.27 E-value=2.4e-11 Score=121.79 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+...-... .... ...++.. +
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~--------~~~~-----~~~~~~~-------~----------------- 52 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT--------VVSQ-----EPLSAAD-------Y----------------- 52 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB--------CCCS-----SCEEETT-------G-----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe--------eeec-----CceEEEE-------e-----------------
Confidence 4568999999999999999999976421100 0000 0000000 0
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhh----cCcEEEEEcCC---CcceehHHHHHHHHHH------cCCceEEEEec
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRV----TDGALVVVDCV---SGVCVQTETVLRQAIA------ERIKPVLFMNK 152 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~----~D~ailVvda~---~g~~~qt~~~~~~~~~------~~ip~iv~iNK 152 (755)
....++++||||+.+|.......++. +|++|+|+|+. +........+...... .++|+++++||
T Consensus 53 ---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 129 (218)
T 1nrj_B 53 ---DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129 (218)
T ss_dssp ---GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred ---eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEc
Confidence 24678999999999998888888877 89999999998 2222222222222221 47899999999
Q ss_pred cchhh
Q psy16810 153 MDRAL 157 (755)
Q Consensus 153 iD~~~ 157 (755)
+|+..
T Consensus 130 ~Dl~~ 134 (218)
T 1nrj_B 130 SELFT 134 (218)
T ss_dssp TTSTT
T ss_pred hHhcc
Confidence 99865
No 123
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.27 E-value=7.8e-13 Score=130.95 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=77.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+...+|+++|+.|+|||||+++|+.. ....+...+++.......+.+.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~---------------- 78 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD----------------TYTESYISTIGVDFKIRTIELD---------------- 78 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC----------------CCCCHHHHHHCCSEEEEEEEET----------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC----------------CCCCCcCCcccceEEEEEEEEC----------------
Confidence 44689999999999999999988321 1111222233333333333332
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHHc---CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIAE---RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+... ++|+++|+||+|+..
T Consensus 79 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 79 --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp --TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred --CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 1246899999999999988888889999999999999986554443333 333333 689999999999854
No 124
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=1.7e-11 Score=120.72 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=79.4
Q ss_pred CCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCC
Q psy16810 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNP 81 (755)
Q Consensus 2 ~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 81 (755)
|.......+|+++|+.|+|||||+++|+...- .. .+. -|+...... .+.
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~------~~~----------~t~~~~~~~-~~~------------ 50 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RD------TYI----------PTIEDTYRQ-VIS------------ 50 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCC--CC------TTS----------CCCCEEEEE-EEE------------
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCC--CC------ccc----------CccccceeE-EEE------------
Confidence 33345668999999999999999999976211 10 000 011100000 010
Q ss_pred CccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH-----cCCceEEEEeccch
Q psy16810 82 DQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA-----ERIKPVLFMNKMDR 155 (755)
Q Consensus 82 ~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~-----~~ip~iv~iNKiD~ 155 (755)
.+...+.+.|+||||+.+|.......++.+|++++|+|+++....+. ...|..+.. .++|+++++||+|+
T Consensus 51 ----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl 126 (199)
T 2gf0_A 51 ----CDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126 (199)
T ss_dssp ----ETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred ----ECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 01235689999999999999999999999999999999987543222 223333332 36899999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 127 ~~ 128 (199)
T 2gf0_A 127 TQ 128 (199)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 125
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.26 E-value=2.5e-11 Score=115.15 Aligned_cols=113 Identities=21% Similarity=0.255 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.+|+++|+.|+|||||+++|+...- ...... |+... ...+.+ +
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~----------------~~~~~~~~~~~~------------------~ 47 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDP----------------TIEDSYRKQVVI------------------D 47 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEE------------------T
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCC----------------ccceEEEEEEEE------------------C
Confidence 5899999999999999999975321 100000 11000 111111 1
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+..+.++++||||+.+|.......++.+|++++|+|+.+....+. ...+..+.. .++|+++++||+|+..
T Consensus 48 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 48 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred CEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 135678999999999999989999999999999999987543332 222333333 2789999999999864
No 126
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.26 E-value=2.4e-12 Score=129.19 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=79.8
Q ss_pred CCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCC
Q psy16810 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPD 82 (755)
Q Consensus 3 ~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 82 (755)
.......+|+++|+.|+|||||+++|+... ... ....|+........+..
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~------------ 55 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGR--FEK----------------NYNATVGAVNHPVTFLD------------ 55 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCS--TTC----------------EEETTTTEEEEEEEEEB------------
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCC--CCC----------------CCCCccceeeEEEEEEe------------
Confidence 344567899999999999999999984311 100 00111211112222210
Q ss_pred ccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH---HcCCceEEEEeccchhh
Q psy16810 83 QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI---AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 83 ~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~ip~iv~iNKiD~~~ 157 (755)
..+..+.++|+||||+.+|.......++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+..
T Consensus 56 ---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 56 ---DQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp ---TTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred ---CCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 011237899999999999988888889999999999999988765554333 2222 23689999999999854
No 127
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.26 E-value=5.9e-12 Score=124.91 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=60.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.|+|||||+++|+........... ...|+ ......+.+.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~------------~t~~~--~~~~~~~~~~----------------- 67 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYA------------MTSGV--EVVVAPVTIP----------------- 67 (208)
T ss_dssp EEEEEEEC------------------------------------------------CEEEECT-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCC------------Cccce--EEEEEEEEEC-----------------
Confidence 3469999999999999999999653111110000 00111 1111222221
Q ss_pred CCC--CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH------cCCceEEEEeccchhh
Q psy16810 87 NEK--GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA------ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~--~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~------~~ip~iv~iNKiD~~~ 157 (755)
+. .+.+.|+||||+.+|.......++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+..
T Consensus 68 -~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 68 -DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp -TSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred -CcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 12 56899999999999998888889999999999999987643333333 33333 4789999999999864
No 128
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.26 E-value=2.2e-12 Score=129.92 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=81.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
....+|+++|+.|+|||||+++|+...-. . .+ ....|.|...... .+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~-~-------~~------~~t~~~~~~~~~~--~~----------------- 59 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFE-K-------KY------VATLGVEVHPLVF--HT----------------- 59 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHT-C-------EE------ETTTTEEEEEEEE--EE-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-C-------CC------CCccceeEEEEEE--EE-----------------
Confidence 34679999999999999999996532100 0 00 0011223222111 11
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHH-HHH--cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ-AIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~--~~ip~iv~iNKiD~~~ 157 (755)
+...+.++|+||||+.+|.......++.+|++++|+|++++...+....|.. +.. .++|+++|+||+|+..
T Consensus 60 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 60 -NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp -TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred -CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 1236789999999999998888889999999999999998765555444433 222 2789999999999864
No 129
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.25 E-value=1e-11 Score=119.42 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=71.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|+...-.... ...|.+... ..+.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---------------~~~~~~~~~--~~~~~~----------------- 48 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH---------------EQLGEDVYE--RTLTVD----------------- 48 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C---------------CCSSSSEEE--EEEEET-----------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc---------------CccccceeE--EEEEEC-----------------
Confidence 5679999999999999999999642111100 011222211 122221
Q ss_pred CCCCeEEEEEcCCCCcc--cHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHHc----CCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVD--FSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE----RIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~d--f~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~~----~ip~iv~iNKiD~~~ 157 (755)
+....++++||||+.+ +.......++.+|++++|+|+++....+.. ..+..+... ++|+++++||+|+..
T Consensus 49 -~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 49 -GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -TEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred -CEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 1246899999999988 444455667889999999999875433332 333444443 789999999999864
No 130
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.25 E-value=4.3e-12 Score=123.13 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+... .......+ .+.+. ...+.+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t------------~~~~~---~~~~~~----------------- 49 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPT------------IENTF---TKLITV----------------- 49 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTT------------CCEEE---EEEEEE-----------------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCC------------ccccE---EEEEEE-----------------
Confidence 356899999999999999999997432 11000000 01111 111111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-----HHHHHHHHcCCceEEEEeccchh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-----TVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
++..+.++|+||||+.+|.......++.+|++++|+|+.+....+.. .+++.+...++|+++++||+|+.
T Consensus 50 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 50 -NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp -TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred -CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 11247889999999999977777788999999999999875433222 22233334578999999999985
No 131
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=5.6e-12 Score=122.49 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=76.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+.. ... ...-|+......+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~-----------------~~~~t~~~~~~~~~~----------------- 59 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG--EVV-----------------TTKPTIGFNVETLSY----------------- 59 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS--EEE-----------------EECSSTTCCEEEEEE-----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CcC-----------------ccCCcCccceEEEEE-----------------
Confidence 46789999999999999999998421 110 001122222233333
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+++....+. ...+.... ..++|+++++||+|+..
T Consensus 60 ---~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 60 ---KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp ---TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred ---CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 26899999999999988888888999999999999987643332 22333333 25789999999999864
No 132
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.25 E-value=5.1e-12 Score=122.88 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=79.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+..+|+++|+.|+|||||+++|+... ....... |+... ...+.+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~--~~~~~~~----------------t~~~~~~~~~~~----------------- 48 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIP----------------TVFDNYSANVMV----------------- 48 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCC----------------CSCCEEEEEEEE-----------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCC--CCCCcCC----------------cccceeEEEEEE-----------------
Confidence 45789999999999999999997532 1100000 11000 011111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH--HHHHHHHc--CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET--VLRQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~--~~~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
++....++++||||+.+|.......++.+|++++|+|++++...+... .+..+... ++|+++++||+|+..
T Consensus 49 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 49 -DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp -TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred -CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 123567889999999999888888889999999999999875544432 33344443 889999999999864
No 133
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.25 E-value=1.9e-11 Score=120.19 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=79.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+...- ......+ .+.+.. ..+.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t------------~~~~~~---~~~~~----------------- 66 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPT------------VFENFS---HVMKY----------------- 66 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCC------------SEEEEE---EEEEE-----------------
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCe------------eeeeeE---EEEEE-----------------
Confidence 4467999999999999999999976321 1000000 011110 01111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH-HHHHHc--CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
++..+.++|+||||+.+|.......++.+|++++|+|+++....... ..| ..+... ++|+++|+||+|+..
T Consensus 67 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 67 -KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp -TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred -CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 12356789999999999998888899999999999999986544432 223 333333 689999999999864
No 134
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.25 E-value=1.4e-11 Score=130.70 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=80.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
-.+|+++|.+|+|||||+++|+........ ...|.|+......+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~---------------~~~~~Ti~~~~~~~~~~------------------ 49 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT---------------RRLGATIDVEHSHLRFL------------------ 49 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG---------------GGCCCCCSEEEEEEEET------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc---------------cCcCCccceEEEEEEeC------------------
Confidence 368999999999999999998653222111 12244554444444332
Q ss_pred CCCeEEEEEcCCCCccc-----HHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH----HHHH--cCCceEEEEeccchh
Q psy16810 88 EKGFLINLIDSPGHVDF-----SSEVTAALRVTDGALVVVDCVSGVCVQTETVLR----QAIA--ERIKPVLFMNKMDRA 156 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df-----~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~----~~~~--~~ip~iv~iNKiD~~ 156 (755)
+++.++++||||+.+| .......++.+|++|+|+|+++....+....|. .+.. .++|+++++||+|+.
T Consensus 50 -~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 50 -GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp -TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred -CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 3689999999999998 344556678999999999999876545443332 2222 278999999999985
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 129 ~ 129 (307)
T 3r7w_A 129 Q 129 (307)
T ss_dssp C
T ss_pred c
Confidence 3
No 135
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.25 E-value=4.1e-12 Score=124.37 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=78.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
++..+|+++|+.|+|||||+++|+. +... +. .-|+......+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~----------~~-------~~t~~~~~~~~~~----------------- 63 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVV----------TT-------VPTVGVNLETLQY----------------- 63 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCE----------EE-------CSSTTCCEEEEEE-----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCC----------Cc-------CCCCceEEEEEEE-----------------
Confidence 3567999999999999999999832 1111 00 0122222223333
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
++..++++||||+.+|.......++.+|++++|+|+++....+. ...+..... .++|+++++||+|+..
T Consensus 64 ---~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 64 ---KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp ---TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred ---CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 37899999999999988777778899999999999987643222 222333322 3789999999999864
No 136
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.1e-11 Score=121.67 Aligned_cols=111 Identities=20% Similarity=0.266 Sum_probs=70.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.|+|||||+++|+...-... ... ...+++. .|
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~--------~~~-----~~~~~~~-------~~------------------ 88 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT--------VVS-----QEPLSAA-------DY------------------ 88 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CC------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc--------ccc-----CCCceee-------ee------------------
Confidence 457999999999999999999976321100 000 0000110 01
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhh----cCcEEEEEcCCCccee--hHHHHHHHHHH-------cCCceEEEEecc
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRV----TDGALVVVDCVSGVCV--QTETVLRQAIA-------ERIKPVLFMNKM 153 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~----~D~ailVvda~~g~~~--qt~~~~~~~~~-------~~ip~iv~iNKi 153 (755)
....++|+||||+.+|.......++. +|++|+|+|++..... .....+..... .++|+++|+||+
T Consensus 89 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 166 (193)
T 2ged_A 89 --DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 166 (193)
T ss_dssp --CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECT
T ss_pred --cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEch
Confidence 25678999999999887666666665 8999999999822211 11122222211 379999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 167 Dl~~ 170 (193)
T 2ged_A 167 ELFT 170 (193)
T ss_dssp TSTT
T ss_pred HhcC
Confidence 9865
No 137
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.24 E-value=5e-12 Score=125.79 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=79.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+...- ......+ +.......+.+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t---------------~~~~~~~~~~~----------------- 73 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPT---------------VFDNYSANVMV----------------- 73 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCC---------------SEEEEEEEEEC-----------------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCe---------------ecceeEEEEEE-----------------
Confidence 3457999999999999999999975321 1000010 00000111111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH--HHHHHHHc--CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET--VLRQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~--~~~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
++..+.++|+||||+.+|.......++.+|++++|+|++++...+... .+..+... ++|+++|+||+|+..
T Consensus 74 -~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 74 -DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp -C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred -CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 123567889999999999888888999999999999999876555542 33344444 899999999999864
No 138
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.24 E-value=2.1e-11 Score=116.64 Aligned_cols=116 Identities=18% Similarity=0.130 Sum_probs=68.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+.+|+++|+.|+|||||+++|+........ + ...+.......+.+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--------------~--~~~~~~~~~~~~~~~------------------ 47 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--------------E--MENSEDTYERRIMVD------------------ 47 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEET------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--------------c--CCCcCCeeeEEEEEC------------------
Confidence 568999999999999999999642221110 0 001111111122221
Q ss_pred CCCeEEEEEcCCCCcccHH-HHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH----cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSS-EVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~-~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+..+.+.++||||+.+|.. .....++.+|++++|+|+++....+.. ..+..+.. .++|+++++||+|+..
T Consensus 48 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 48 KEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp TEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred CeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 2357889999999999876 444567889999999999885433222 22333333 2789999999999863
No 139
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.24 E-value=2.4e-11 Score=128.21 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCc-------------ccHHHHHHHhhhcCcEE-EEEcCCCcceehHH-HHHHHHHHcCCceEEEEeccc
Q psy16810 90 GFLINLIDSPGHV-------------DFSSEVTAALRVTDGAL-VVVDCVSGVCVQTE-TVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 90 ~~~i~lIDtPGh~-------------df~~~~~~al~~~D~ai-lVvda~~g~~~qt~-~~~~~~~~~~ip~iv~iNKiD 154 (755)
...++||||||+. .|...+..+++.+|.++ +|+|+..+...+.. .+++.+...+.|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999974 34556667888888777 68999998877764 466666667899999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 204 l~~ 206 (299)
T 2aka_B 204 LMD 206 (299)
T ss_dssp GSC
T ss_pred cCC
Confidence 864
No 140
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.23 E-value=4.9e-11 Score=116.66 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=68.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|+.|+|||||+++|+... ......+++ +... ...+.+.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~------------~~~~---~~~~~~~------------------ 65 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTI------------EDSY---RKQVVID------------------ 65 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTC------------CEEE---EEEEEET------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC--CccccCCcc------------ceEE---EEEEEEC------------------
Confidence 4689999999999999999997532 110000000 0000 0111221
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH----cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+..+.++|+||||+.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++++||+|+..
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp TEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 1346799999999999999889999999999999999886543333333 23332 3789999999999864
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.23 E-value=8.5e-12 Score=139.21 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=74.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+|+|++|+|||||+++|+.....+....+|+ |.......+.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gt---------------T~d~~~~~i~~-------------------- 269 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGT---------------TRDVVESQLVV-------------------- 269 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTC---------------CHHHHHHEEEE--------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCe---------------eEEEEEEEEEE--------------------
Confidence 3699999999999999999988654433222332 22222223333
Q ss_pred CCeEEEEEcCCCCcccHHHHHH--------HhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTA--------ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~--------al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+++.++|+||||+.++...+.. .++.+|++++|+|++.+...+...+++.+. ..|+++|+||+|+..
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVE 344 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSC
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCc
Confidence 3788999999999876544333 567899999999999998888877776654 379999999999864
No 142
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.23 E-value=8.6e-12 Score=120.91 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=73.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+... .......+. +..... .. .
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~------------~~~~~~-~~--~------------------ 50 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTV------------FDNFSA-NV--V------------------ 50 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSC--CC----------------------CBC-CC--C------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCee------------eeeEEE-EE--E------------------
Confidence 345789999999999999999997532 110000000 000000 00 0
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HH-HHHHHc--CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
.++....++|+||||+.+|.......++.+|++++|+|+++....+... .| ..+... ++|+++++||+|+..
T Consensus 51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 51 VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp -------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred ECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 1123567889999999999888888899999999999998765444332 23 333332 789999999999864
No 143
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.23 E-value=7e-12 Score=140.41 Aligned_cols=112 Identities=19% Similarity=0.177 Sum_probs=64.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|++|+|||||+++|+.....+.... .|.|.......+.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~---------------~gtT~d~~~~~i~~-------------------- 278 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHM---------------PGTTRDYIEECFIH-------------------- 278 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEE--------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCC---------------CCceEEEEEEEEEE--------------------
Confidence 4699999999999999999965432222111 23444433344444
Q ss_pred CCeEEEEEcCCCCcccHHHHH--------HHhhhcCcEEEEEcCCCccee----hHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVT--------AALRVTDGALVVVDCVSGVCV----QTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~--------~al~~~D~ailVvda~~g~~~----qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+++.++||||||+.+|...+. ..++.+|++++|+|++.+... ....++..+. ++|+++|+||+|+.
T Consensus 279 ~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRA 356 (476)
T ss_dssp TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSC
T ss_pred CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCC
Confidence 378999999999988764433 356889999999999998766 3333333332 78999999999986
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 357 ~ 357 (476)
T 3gee_A 357 A 357 (476)
T ss_dssp T
T ss_pred C
Confidence 4
No 144
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.22 E-value=1.6e-11 Score=127.72 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=76.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|++|+|||||+++|....-. .+ .. .|.|+...... + +
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-----v~------~~-----pg~tv~~~~~~--~------------------~ 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-----VG------NW-----PGVTVERKSGL--V------------------K 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-----CC------SS-----SCCCCSCEEEE--C------------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-----cc------CC-----CCCcEEEEEEE--E------------------e
Confidence 478999999999999999999542111 11 11 15555433221 1 1
Q ss_pred CCCeEEEEEcCCCCcccH------HHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFS------SEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~------~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
. +..++++||||+.+|. .-....++ .+|++++|+|++.. ......+.++.+.++|+++++||+|+..
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 1 4679999999998885 22233444 59999999999873 2233445667778999999999999864
No 145
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.22 E-value=7.9e-12 Score=123.87 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=77.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+...-... ... |+.... ...+.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~----------------t~~~~~-~~~~~---------------- 66 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--YDP----------------TVENTY-SKIVT---------------- 66 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--CCC----------------CSEEEE-EEEEC----------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--CCC----------------ccceEE-EEEEE----------------
Confidence 3568999999999999999999975321100 000 111000 00110
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHH----HcCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
.++..+.++|+||||+.+|.......++.+|++++|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 67 LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp ----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred ECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 112468899999999999988888899999999999999975543333322 2222 23789999999999864
No 146
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.22 E-value=6.4e-11 Score=123.31 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=75.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|++|+|||||+++|+...-...... .+.|.......+.+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~------------------ 84 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF---------------QSEGPRPVMVSRSR------------------ 84 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS---------------SCCCSSCEEEEEEE------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC---------------CCcceeeEEEEEee------------------
Confidence 467999999999999999999975332111111 12333333333333
Q ss_pred CCCCeEEEEEcCCCCcccH---HHHHHHh------hhcCcEEEEEcCCC-cceehHHHHHHHHHHc-C----CceEEEEe
Q psy16810 87 NEKGFLINLIDSPGHVDFS---SEVTAAL------RVTDGALVVVDCVS-GVCVQTETVLRQAIAE-R----IKPVLFMN 151 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~---~~~~~al------~~~D~ailVvda~~-g~~~qt~~~~~~~~~~-~----ip~iv~iN 151 (755)
++..++||||||+.+|. ......+ +.+|++++|+|... .........++.+... + .|+++++|
T Consensus 85 --~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~n 162 (270)
T 1h65_A 85 --AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT 162 (270)
T ss_dssp --TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred --CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence 37899999999998764 2333333 26899999988754 3333444555555432 4 58999999
Q ss_pred ccchh
Q psy16810 152 KMDRA 156 (755)
Q Consensus 152 KiD~~ 156 (755)
|+|+.
T Consensus 163 K~Dl~ 167 (270)
T 1h65_A 163 HAQFS 167 (270)
T ss_dssp CCSCC
T ss_pred CcccC
Confidence 99985
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.22 E-value=3.5e-11 Score=134.24 Aligned_cols=116 Identities=18% Similarity=0.277 Sum_probs=83.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+|+|++|+|||||+++|+.....+....+ |.|.......+.|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~---------------gtT~d~~~~~i~~~----------------- 226 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP---------------GTTRDPVDDEVFID----------------- 226 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------------------CCEEEEET-----------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCC---------------CCcCCceEEEEEEC-----------------
Confidence 4579999999999999999999754332222222 33443333445553
Q ss_pred CCCCeEEEEEcCCCCcccHH------------HHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccc
Q psy16810 87 NEKGFLINLIDSPGHVDFSS------------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~------------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD 154 (755)
+..+.++||||...+.. .+..+++.+|++++|+|+..+...+...++..+...++|+++++||+|
T Consensus 227 ---g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 227 ---GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp ---TEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred ---CEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 67899999999854332 235678899999999999999988888888888889999999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 304 l~~ 306 (439)
T 1mky_A 304 LVV 306 (439)
T ss_dssp GST
T ss_pred CCC
Confidence 864
No 148
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=2.6e-11 Score=119.11 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=80.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|+.|+|||||+++|+... .......+ . +.+. ...+.+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t--~----------~~~~---~~~~~~------------------ 61 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPT--V----------FDHY---AVSVTV------------------ 61 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCS--S----------CCCE---EEEEES------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCc--c----------ccee---EEEEEE------------------
Confidence 46799999999999999999997642 11100000 0 0010 011111
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH--HHHHHHHHc--CCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE--TVLRQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~--~~~~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
++..+.++|+||||+.+|.......++.+|++++|+|+++....+.. ..+..+... ++|+++++||+|+..
T Consensus 62 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 62 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 12357899999999999988888889999999999999886543333 233444554 889999999999864
No 149
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.21 E-value=5.2e-11 Score=120.53 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=73.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|..|+|||||+++|+...-. . .+ ..+.|.......+.+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~---------~~------~~~~t~~~~~~~~~~------------------ 73 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-V---------QS------YSFTTKNLYVGHFDH------------------ 73 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-E---------EC------C-----CEEEEEEEE------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-c---------CC------CCCcceeeeeeeeec------------------
Confidence 4689999999999999999999542110 0 00 011222222222222
Q ss_pred CCCCeEEEEEcCCCCcc------c---HHHHHHHhhhcCcEEEEEcCCCcceeh---HHHHHHHHHHc--CCceEEEEec
Q psy16810 87 NEKGFLINLIDSPGHVD------F---SSEVTAALRVTDGALVVVDCVSGVCVQ---TETVLRQAIAE--RIKPVLFMNK 152 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~d------f---~~~~~~al~~~D~ailVvda~~g~~~q---t~~~~~~~~~~--~ip~iv~iNK 152 (755)
++..+.|+||||+.+ . ...+....+.+|++|+|+|+++....+ ....+..+... ++|+++|+||
T Consensus 74 --~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK 151 (228)
T 2qu8_A 74 --KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNK 151 (228)
T ss_dssp --TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEEC
T ss_pred --CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeC
Confidence 367899999999943 1 122333467789999999998865433 22344555554 8899999999
Q ss_pred cchhh
Q psy16810 153 MDRAL 157 (755)
Q Consensus 153 iD~~~ 157 (755)
+|+..
T Consensus 152 ~Dl~~ 156 (228)
T 2qu8_A 152 IDKCN 156 (228)
T ss_dssp GGGCC
T ss_pred cccCC
Confidence 99864
No 150
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=130.67 Aligned_cols=111 Identities=21% Similarity=0.184 Sum_probs=73.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|++|+|||||+++|+... . .... -|+......+.+
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~--~----------~~~~-------pT~~~~~~~~~~------------------- 206 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGE--I----------VTTI-------PTIGFNVETVEY------------------- 206 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSC--C----------EEEE-------EETTEEEEEEEE-------------------
T ss_pred cceEEEECCCCccHHHHHHHHhCCC--C----------CCcc-------cccceEEEEEec-------------------
Confidence 3589999999999999999983211 1 1000 133323333333
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCccee--hHHHHHHHHHH---cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV--QTETVLRQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~--qt~~~~~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
++..++|+||||+.+|.......++.+|++|+|+|+++.... ....+...... .++|+++|+||+|+..
T Consensus 207 -~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 207 -KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp -TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred -CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 378999999999999998899999999999999999764332 22222223222 2789999999999865
No 151
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.20 E-value=2.5e-11 Score=135.98 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=84.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+|+|.+|+|||||+++|+.....+....+| .|.......+.+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g---------------TT~d~~~~~i~~-------------------- 288 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG---------------TTRDVISEEIVI-------------------- 288 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC---------------CSSCSCCEEEEE--------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC---------------eeeeeEEEEEec--------------------
Confidence 589999999999999999998764333322333 333333334444
Q ss_pred CCeEEEEEcCCCCc-ccH--------HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHV-DFS--------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~-df~--------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..++|+||||+. ++. ..+...++.+|++|+|+|++++...+...+|+.+ .++|+++++||+|+..
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 37789999999998 653 3456788999999999999998777777777655 4889999999999864
No 152
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.20 E-value=3.6e-11 Score=117.19 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~ 83 (755)
.+...+|+++|+.|+|||||+++|+...- .. . +. -|+... ...+.+
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~--~~----~--~~----------~t~~~~~~~~~~~--------------- 50 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCF--PE----N--YV----------PTVFENYTASFEI--------------- 50 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCC--CS----S--CC----------CCSEEEEEEEEEC---------------
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCC--CC----C--CC----------CccceeEEEEEEE---------------
Confidence 35567999999999999999999976321 10 0 00 011000 011111
Q ss_pred cccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
+.....+.|+||||+.+|.......++.+|++|+|+|++.....+.. ..| ..+.. .++|++++.||+|+..
T Consensus 51 ---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 51 ---DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp ---SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred ---CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 12357899999999999987777788999999999999886544332 233 33333 3789999999999864
No 153
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.20 E-value=1.6e-11 Score=117.19 Aligned_cols=114 Identities=12% Similarity=0.025 Sum_probs=61.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|+.|+|||||+++|+...-... ....|.+.. ..+.+ +
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~---~~~~~------------------~ 45 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE---------------AEAAGHTYD---RSIVV------------------D 45 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE---EEEEE------------------T
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC---------------CCccccceE---EEEEE------------------C
Confidence 45899999999999999999942110000 001111111 11111 1
Q ss_pred CCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHHH----cCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||||+.+|.......++.+|++++|+|.++....+. ...+..+.. .++|+++++||+|+..
T Consensus 46 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 46 GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp TEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred CEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 235789999999999998888889999999999999987543322 223344433 3789999999999864
No 154
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.19 E-value=1.6e-11 Score=121.74 Aligned_cols=116 Identities=15% Similarity=0.052 Sum_probs=78.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.|+|||||+++|+...-... ... + .+.+.. ..+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~-t-----------~~~~~~---~~~~~~----------------- 69 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVP-T-----------VFENYI---ADIEVD----------------- 69 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCC-S-----------SCCCCE---EEEEET-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCC-c-----------ccceEE---EEEEEC-----------------
Confidence 357999999999999999999975321100 000 0 011110 112221
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH--HHHHHHHHc--CCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE--TVLRQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~--~~~~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
+..+.+.|+||||+.+|.......++.+|++++|+|++.....+.. ..+..+... ++|+++++||+|+..
T Consensus 70 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 70 -GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp -TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred -CEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 1246899999999999988888889999999999999875433332 333444444 899999999999864
No 155
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.19 E-value=3e-11 Score=121.05 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=63.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+..+|+++|+.|+|||||+++|+... ...... -|+... ...+.+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~--~~~~~~----------------~t~~~~~~~~~~~----------------- 77 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA--FPESYT----------------PTVFERYMVNLQV----------------- 77 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------C----------------CCCCEEEEEEEEE-----------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCC----------------CccceeEEEEEEE-----------------
Confidence 45799999999999999999996421 110000 011000 111111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HH-HHHHH--cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
++..+.++|+||||+.+|.......++.+|++++|+|+++....+... .| ..+.. .++|+++|+||+|+..
T Consensus 78 -~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 78 -KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp -TTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred -CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 113568999999999999988888999999999999998865443332 23 33333 2789999999999864
No 156
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.19 E-value=3.9e-11 Score=119.49 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=78.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcc
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+...+|+++|..|+|||||+++|+...- .. . +. -|+... ....+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~----~--~~----------~t~~~~-~~~~~~--------------- 70 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCF--PE----N--YV----------PTVFEN-YTASFE--------------- 70 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCC--CS----S--CC----------CCSEEE-EEEEEE---------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCC--CC----C--cC----------Ccccee-EEEEEE---------------
Confidence 34568999999999999999999975321 10 0 00 011100 011111
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
.+.....++|+||||+.+|.......++.+|++|+|+|++........ ..| ..+.. .++|++++.||+|+..
T Consensus 71 -~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 71 -IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp -SSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred -ECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 112357899999999999987777788999999999999876543332 233 33333 3789999999999863
No 157
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.18 E-value=4.3e-11 Score=119.45 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=78.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+... ....... |+... ....+.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~----------------t~~~~-~~~~~~---------------- 51 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIP----------------TVFDN-FSANVA---------------- 51 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSC--CCSSCCC----------------SSCCC-EEEEEE----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--CCccCCC----------------cccee-EEEEEE----------------
Confidence 456799999999999999999997532 1100000 11100 011111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH--HHHHHHHHc--CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE--TVLRQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~--~~~~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
.++..+.++|+||||+.+|.......++.+|++|+|+|+++....+.. ..+..+... ++|+++++||+|+..
T Consensus 52 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 52 VDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp CSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 112357899999999999988888889999999999999886544433 233344443 789999999999864
No 158
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=2.3e-11 Score=121.07 Aligned_cols=116 Identities=15% Similarity=0.066 Sum_probs=77.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.|+|||||+++|+...-... ... ..+.+.. ..+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~------------t~~~~~~---~~~~~~----------------- 69 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVP------------TVFENYV---ADIEVD----------------- 69 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEET-----------------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCC------------cccceEE---EEEEEC-----------------
Confidence 357999999999999999999975321100 000 0011110 111111
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH--HHHHHHHHc--CCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE--TVLRQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~--~~~~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
+....+.|+||||+.+|.......++.+|++++|+|++.....+.. ..+..+... ++|+++++||+|+..
T Consensus 70 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 70 -GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp -TEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 1246899999999999988888889999999999999875433322 233444444 899999999999864
No 159
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=1.3e-10 Score=114.45 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=75.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
+..+|+++|+.|+|||||+++|+...-... .. .|+... ...+.+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~----------------~t~~~~~~~~~~~----------------- 71 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YD----------------PTLESTYRHQATI----------------- 71 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CC----------------TTCCEEEEEEEEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc--cC----------------CCCCceEEEEEEE-----------------
Confidence 457999999999999999999976321100 00 011100 011111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHHHHHH----HcCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAI----AERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~ip~iv~iNKiD~~~ 157 (755)
++..+.+.|+||||+.+ .......++.+|++++|+|+++...... ...+..+. ..++|+++++||+|+..
T Consensus 72 -~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 72 -DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp -TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred -CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 12357899999999998 6677788899999999999987432221 22222222 35789999999999865
No 160
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.17 E-value=3.3e-11 Score=119.08 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=76.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+..+|+++|+.|+|||||+++|+... ...... -|+... ...+.+.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~----------------~t~~~~~~~~~~~~--------------- 64 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYI----------------PTAFDNFSAVVSVD--------------- 64 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------------------------CCSSEEEEEEEEET---------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCC----------------CcccceeEEEEEEC---------------
Confidence 346799999999999999999996432 110000 011100 0111111
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HH-HHHHHc--CCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
+..+.+.|+||||+.+|.......++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+..
T Consensus 65 ---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 65 ---GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp ---TEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred ---CEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 12467889999999999877777889999999999998865444332 23 333333 789999999999864
No 161
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.13 E-value=8.9e-11 Score=114.52 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=69.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+++|+.|+|||||+++|+... .. . +...|+|.... .+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~---~-----------~~~~~~t~~~~--~~~~-------------------- 43 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VR---R-----------GKRPGVTRKII--EIEW-------------------- 43 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CS---S-----------SSSTTCTTSCE--EEEE--------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--Cc---c-----------CCCCCccceeE--EEec--------------------
Confidence 589999999999999999996431 11 0 01124443322 2222
Q ss_pred CCeEEEEEcCCCC-----------cccHHHHHHHhhh----cCcEEEEEcCCCc-----------ceehHHHHHHHHHHc
Q psy16810 89 KGFLINLIDSPGH-----------VDFSSEVTAALRV----TDGALVVVDCVSG-----------VCVQTETVLRQAIAE 142 (755)
Q Consensus 89 ~~~~i~lIDtPGh-----------~df~~~~~~al~~----~D~ailVvda~~g-----------~~~qt~~~~~~~~~~ 142 (755)
. .++++||||+ ..|.......++. ++.++.|+|+... ...++..++..+...
T Consensus 44 -~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (190)
T 2cxx_A 44 -K-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 121 (190)
T ss_dssp -T-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred -C-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhc
Confidence 1 6899999994 4455544444444 4556666666542 223344455666778
Q ss_pred CCceEEEEeccchhh
Q psy16810 143 RIKPVLFMNKMDRAL 157 (755)
Q Consensus 143 ~ip~iv~iNKiD~~~ 157 (755)
++|+++++||+|+..
T Consensus 122 ~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 122 DIPTIVAVNKLDKIK 136 (190)
T ss_dssp TCCEEEEEECGGGCS
T ss_pred CCceEEEeehHhccC
Confidence 999999999999864
No 162
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.12 E-value=1.8e-10 Score=112.48 Aligned_cols=110 Identities=12% Similarity=0.146 Sum_probs=74.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|..|+|||||+++|+...- .. ...+ |...-...+.+.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~--~~---------~~~~-------t~~~~~~~~~~~---------------- 63 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY--VQ---------EESP-------EGGRFKKEIVVD---------------- 63 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC--CC---------CCCT-------TCEEEEEEEEET----------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--CC---------CcCC-------CcceEEEEEEEC----------------
Confidence 3457899999999999999999975321 10 0000 100001122221
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH----cCCceEEEEeccchh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLFMNKMDRA 156 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~ip~iv~iNKiD~~ 156 (755)
+..+.++|+||||+.+|. .++.+|++++|+|+++....+.. ..+..+.. .++|++++.||+|+.
T Consensus 64 --~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 64 --GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp --TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred --CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 134678899999999886 77889999999999987655553 33334443 367999999999985
No 163
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.12 E-value=2.3e-10 Score=114.66 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=78.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|..++|||||+++|+...- ......+ .|.+. ...+.+
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~------------------ 70 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPT------------VFENY---TACLET------------------ 70 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCC------------SEEEE---EEEEEC------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCe------------eeeeE---EEEEEE------------------
Confidence 357899999999999999999976321 1000000 01111 001111
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH-HHHH-HHHHHc--CCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
++..+.++|+||||+.+|.......++.+|++|+|+|+++...... ...| ..+... ++|+++|.||+|+..
T Consensus 71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 1246789999999999998888888999999999999998654443 2333 444444 789999999999864
No 164
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.11 E-value=1.6e-10 Score=113.10 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=73.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccce-EEEEeeeCccccccccCCCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA-ISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+..+|+++|..|+|||||+++|+... ....... |+.... ..+.+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~----------------t~~~~~~~~~~~---------------- 64 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR--FISEYDP----------------NLEDTYSSEETV---------------- 64 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS--CCSCCCT----------------TCCEEEEEEEEE----------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC--CCcccCC----------------CccceeeEEEEE----------------
Confidence 456799999999999999999997632 1100000 111000 01111
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH------cCCceEEEEeccchhh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA------ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~------~~ip~iv~iNKiD~~~ 157 (755)
+...+.+.|+||||+.+|.. +...++.+|++++|+|+++....+... .+..+.. .++|++++.||+|+..
T Consensus 65 --~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 65 --DHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp --TTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred --CCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 12357899999999988865 467889999999999998754433322 2233332 4889999999999864
No 165
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.71 E-value=7e-12 Score=124.46 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=78.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|+.|+|||||+++|+... .......+ ..+ .. ...+.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t--~~~----------~~---~~~~~~----------------- 73 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPT--VFD----------NY---SANVMV----------------- 73 (204)
Confidence 345789999999999999999996421 11000000 000 00 001111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HH-HHHHHc--CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
++..+.++|+||||+.+|.......++.+|++++|+|++++...+... .| ..+... ++|+++++||+|+..
T Consensus 74 -~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 74 -DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 123567889999999999988888999999999999998876544432 23 333333 789999999999864
No 166
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.10 E-value=2.4e-10 Score=112.68 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=75.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
....+|+++|..|+|||||+++|+....... . ..+++.......+.+.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~--------------~--~~~~~~~~~~~~~~~~---------------- 68 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA--------------H--EPENPEDTYERRIMVD---------------- 68 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG--------------G--TTTSCTTEEEEEEEET----------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc--------------C--CCCcccceEEEEEEEC----------------
Confidence 3467999999999999999999843221111 0 0111221111222221
Q ss_pred cCCCCeEEEEEcCCCCcccHH-HHHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSS-EVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~-~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||||+.+|.. .....++.+|++|+|+|+++....... ..+..+.. .++|++++.||+|+..
T Consensus 69 --~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 69 --KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp --TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred --CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 1356788999999998865 445567899999999999875432222 22233332 3789999999999864
No 167
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.08 E-value=2.2e-10 Score=130.05 Aligned_cols=112 Identities=20% Similarity=0.188 Sum_probs=81.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+..+|+++|.+|+|||||+++|+... +. ... -|+......+.+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~--~~----------~~~-------~T~~~~~~~~~~------------------ 363 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQ--SV----------TTI-------PTVGFNVETVTY------------------ 363 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSS--CC----------CCC-------CCSSEEEEEEES------------------
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCC--CC----------CcC-------CccceeEEEEEe------------------
Confidence 45799999999999999999997643 11 000 122222233333
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH----cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+++.++|+||||+.+|.......++.+|++|+|+|+++....+... .|..... .++|+|+|+||+|+..
T Consensus 364 --~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 364 --KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp --SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred --CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 3789999999999999988888999999999999999875433322 2222222 4789999999999864
No 168
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.08 E-value=7.7e-10 Score=106.77 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=72.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCcc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQT 84 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (755)
.+..+|+++|..|+|||||+++|+...- . +.. -|+... ...+.+.
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~--~----------~~~-------~t~~~~~~~~~~~~--------------- 50 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSY--Q----------VLE-------KTESEQYKKEMLVD--------------- 50 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCC--C----------CCS-------SCSSSEEEEEEEET---------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--C----------CcC-------CCcceeEEEEEEEC---------------
Confidence 3557899999999999999999976321 1 000 011110 1111121
Q ss_pred ccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHH------cCCceEEEEeccchh
Q psy16810 85 AKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIA------ERIKPVLFMNKMDRA 156 (755)
Q Consensus 85 ~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~------~~ip~iv~iNKiD~~ 156 (755)
+....++++||||+.+ ...++.+|++++|+|+++....+....|. .+.. .++|++++.||+|+.
T Consensus 51 ---~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 51 ---GQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ---TEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ---CEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 1346799999999987 35678899999999998865544444332 2222 378999999999984
No 169
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.05 E-value=3.1e-10 Score=133.25 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcc---cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHH-HHHHcCCceEEEEeccchhh
Q psy16810 91 FLINLIDSPGHVD---FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLR-QAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 91 ~~i~lIDtPGh~d---f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~~~ip~iv~iNKiD~~~ 157 (755)
..++||||||+.+ +...+...++.+|++|+|+|++.+........|. .+...+.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 4689999999865 4556677889999999999999988777776665 44557889999999999864
No 170
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.04 E-value=1.3e-09 Score=109.45 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=80.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+--.|+++|..++|||||+.+++... .. +. .. -|+........+. .
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~--f~----------~~----~~--~Tig~d~~~k~~~----------------~ 57 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDS--FD----------NT----YQ--ATIGIDFLSKTMY----------------L 57 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC--CC--------------------------CEEEEEE----------------C
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCC--CC----------CC----cC--CccceEEEEEEEE----------------e
Confidence 34579999999999999999996521 11 10 00 1221111111111 1
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHH---HcCCceEEEEeccchhhhcccC
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAI---AERIKPVLFMNKMDRALLELQL 162 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~---~~~ip~iv~iNKiD~~~~~~~~ 162 (755)
+...+.++|+||+|..+|..-....++.+|++++|.|.+..-..+... .|..+. ..++|+++|.||+|+... -.+
T Consensus 58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~-r~V 136 (216)
T 4dkx_A 58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK-RQV 136 (216)
T ss_dssp SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG-CCS
T ss_pred cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc-Ccc
Confidence 224678999999999999998999999999999999998755433322 223332 246899999999998642 234
Q ss_pred CHHHH
Q psy16810 163 DAEDL 167 (755)
Q Consensus 163 ~~~~~ 167 (755)
+.++.
T Consensus 137 ~~~e~ 141 (216)
T 4dkx_A 137 SIEEG 141 (216)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 55544
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.03 E-value=1e-09 Score=118.88 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=73.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
.++.|+|+|++|+|||||+++|+...- .. +...+.|.......+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~---------------~~~~~~T~d~~~~~i~~~----------------- 224 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KV---------------DTKLFTTMSPKRYAIPIN----------------- 224 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cc---------------cCCcccccCCEEEEEEEC-----------------
Confidence 366799999999999999999954221 10 011133444444445553
Q ss_pred CCCCeEEEEEcCCCCccc--------HHHHHHHhhhcCcEEEEEcCCCcc---eehHHHHHHHHHH---cCCceEEEEec
Q psy16810 87 NEKGFLINLIDSPGHVDF--------SSEVTAALRVTDGALVVVDCVSGV---CVQTETVLRQAIA---ERIKPVLFMNK 152 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df--------~~~~~~al~~~D~ailVvda~~g~---~~qt~~~~~~~~~---~~ip~iv~iNK 152 (755)
+..+.++||||+..- ...+...++.+|.+++|+|++++. ..+...+...+.. .++|+++|.||
T Consensus 225 ---g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK 301 (364)
T 2qtf_A 225 ---NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK 301 (364)
T ss_dssp ---TEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC
T ss_pred ---CEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC
Confidence 578999999998321 233455678999999999998764 2232223333333 46799999999
Q ss_pred cchhh
Q psy16810 153 MDRAL 157 (755)
Q Consensus 153 iD~~~ 157 (755)
+|+..
T Consensus 302 ~Dl~~ 306 (364)
T 2qtf_A 302 IDKIN 306 (364)
T ss_dssp GGGCC
T ss_pred CCCCC
Confidence 99853
No 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.03 E-value=2.7e-10 Score=122.16 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=76.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+..|+++|.+++|||||+++|+...-.+ .++ ...|+......+.+.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i----------~~~------~ftTl~p~~g~v~~~------------------ 203 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI----------ADY------HFTTLVPNLGMVETD------------------ 203 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE----------SST------TSSCCCCCEEEEECS------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc----------ccC------CccccCceEEEEEeC------------------
Confidence 4579999999999999999984421111 111 012333333334442
Q ss_pred CCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCC----cceehHHHHHHHHHHc-----CCceEEEEe
Q psy16810 88 EKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVS----GVCVQTETVLRQAIAE-----RIKPVLFMN 151 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~----g~~~qt~~~~~~~~~~-----~ip~iv~iN 151 (755)
+...+.|+||||+.+ +..+..+.+..+|++|+|+|++. ....+...++..+..+ ++|+++|+|
T Consensus 204 -~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 204 -DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp -SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred -CCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 236899999999754 45666677788999999999975 2222333444555553 689999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|+|+..
T Consensus 283 K~Dl~~ 288 (342)
T 1lnz_A 283 KMDMPE 288 (342)
T ss_dssp CTTSTT
T ss_pred CccCCC
Confidence 999853
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.03 E-value=6.8e-10 Score=120.52 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=51.7
Q ss_pred CeEEEEEcCCCCccc-------------HHHHHHHhhhcCcEEEEEcCCC-cc-eehHHHHHHHHHHcCCceEEEEeccc
Q psy16810 90 GFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDCVS-GV-CVQTETVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 90 ~~~i~lIDtPGh~df-------------~~~~~~al~~~D~ailVvda~~-g~-~~qt~~~~~~~~~~~ip~iv~iNKiD 154 (755)
...++||||||..++ ...+...++.+|++|+|+|+.. .. ......+++.+...+.|+|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567999999999887 6667778899999999998643 22 23334455555566889999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 215 l~~ 217 (360)
T 3t34_A 215 LMD 217 (360)
T ss_dssp GCC
T ss_pred cCC
Confidence 864
No 174
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.01 E-value=6.4e-10 Score=120.38 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=49.1
Q ss_pred CeEEEEEcCCCCcc-------------cHHHHHHHhhhcC-cEEEEEcCCCcceehHHH-HHHHHHHcCCceEEEEeccc
Q psy16810 90 GFLINLIDSPGHVD-------------FSSEVTAALRVTD-GALVVVDCVSGVCVQTET-VLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 90 ~~~i~lIDtPGh~d-------------f~~~~~~al~~~D-~ailVvda~~g~~~qt~~-~~~~~~~~~ip~iv~iNKiD 154 (755)
...++||||||..+ +...+...++.++ .+++|+|+..+...+... +++.+...+.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 56899999999743 3334445555444 556678888877766653 66767677899999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 209 l~~ 211 (353)
T 2x2e_A 209 LMD 211 (353)
T ss_dssp GSC
T ss_pred ccC
Confidence 964
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.95 E-value=9.6e-10 Score=108.56 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=77.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
...+|+++|+.|+|||||+++|+...-... ....+++......+.+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~----------------- 50 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVD----------------- 50 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEET-----------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEEEC-----------------
Confidence 568999999999999999999965321110 00011111111223332
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||||+..|.......++.+|++++|+|.......+....| ..+.. .+.|+++++||+|+..
T Consensus 51 -g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 51 -GKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp -TEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred -CEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 1245788999999998876667777889999999999876544333223 22322 3679999999999864
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.94 E-value=2.9e-09 Score=105.73 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=72.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
+-..|+++|+.|+|||||+++|+.... .. ......|.|... ..+.+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~-------------~~~~~~G~~~~~--~~~~~~----------------- 71 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-LA-------------RTSKTPGRTQLI--NLFEVA----------------- 71 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCE--EEEEEE-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cc-------------cccCCCccceee--EEEEec-----------------
Confidence 346899999999999999999842210 00 000112333221 122222
Q ss_pred CCCCeEEEEEcCCCCccc----------HHHHHHHh---hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEecc
Q psy16810 87 NEKGFLINLIDSPGHVDF----------SSEVTAAL---RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKM 153 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df----------~~~~~~al---~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKi 153 (755)
+ .+.++||||+.++ ...+...+ +.+|++++|+|+..+.......+++.+...++|.+++.||+
T Consensus 72 ---~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 72 ---D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp ---T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred ---C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc
Confidence 2 5789999998542 22222233 57899999999998876666667777778899999999999
Q ss_pred chh
Q psy16810 154 DRA 156 (755)
Q Consensus 154 D~~ 156 (755)
|+.
T Consensus 148 D~~ 150 (210)
T 1pui_A 148 DKL 150 (210)
T ss_dssp GGS
T ss_pred cCC
Confidence 985
No 177
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.94 E-value=2.4e-09 Score=116.01 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
....+|+++|++|+|||||+++|+..... .+. ..+.|.......+.+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-----~~~-----------~~~~t~~~~~~~~~~----------------- 211 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-----IAS-----------YPFTTRGINVGQFED----------------- 211 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-----EEC-----------CTTCSSCEEEEEEEE-----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-----cCC-----------CCCeeeceeEEEEEe-----------------
Confidence 35679999999999999999999432210 000 012222222222222
Q ss_pred cCCCCeEEEEEcCCCCcccH--------HHHHHHh-hhcCcEEEEEcCCCcc--eehH-HHHHHHHHH-c-CCceEEEEe
Q psy16810 86 KNEKGFLINLIDSPGHVDFS--------SEVTAAL-RVTDGALVVVDCVSGV--CVQT-ETVLRQAIA-E-RIKPVLFMN 151 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~--------~~~~~al-~~~D~ailVvda~~g~--~~qt-~~~~~~~~~-~-~ip~iv~iN 151 (755)
.+..+.++||||+.++. .....++ ..+|++++|+|++.+. ..+. ...+..+.. . ++|+++++|
T Consensus 212 ---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~N 288 (357)
T 2e87_A 212 ---GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVIN 288 (357)
T ss_dssp ---TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred ---cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 36789999999996642 1233333 3689999999987643 2222 223333332 3 899999999
Q ss_pred ccchhh
Q psy16810 152 KMDRAL 157 (755)
Q Consensus 152 KiD~~~ 157 (755)
|+|+..
T Consensus 289 K~Dl~~ 294 (357)
T 2e87_A 289 KIDVAD 294 (357)
T ss_dssp CTTTCC
T ss_pred CcccCC
Confidence 999853
No 178
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.92 E-value=7.7e-10 Score=118.22 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=78.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccc-eEEEEeeeCccccccccCCCccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST-AISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
...+|+++|..|+|||||+++|+... ......+ |+... ...+.+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~----------------- 198 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIP----------------TVFDNYSANVMV----------------- 198 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCC----------------CSEEEEEEEEEE-----------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC--CCcccCC----------------cccceeEEEEEE-----------------
Confidence 34789999999999999999996532 1110011 11000 011111
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHH-HH-HHHHHc--CCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VL-RQAIAE--RIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~~~--~ip~iv~iNKiD~~~ 157 (755)
++....++|+||||+.+|.......++.+|++++|+|+++....+... .| ..+... ++|+++++||+|+..
T Consensus 199 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 199 -DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp -TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred -CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 113467779999999999888888899999999999999876544432 23 344444 789999999999864
No 179
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.92 E-value=9.8e-10 Score=107.06 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcce-ehHHHHH-HHHHH--cCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-VQTETVL-RQAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~-~qt~~~~-~~~~~--~~ip~iv~iNKiD~~~ 157 (755)
....+.++||||+.+|.......++.+|++++|+|.+++.. ......| ..+.. .++|++++.||+|+..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 36789999999998887766777889999999999987631 1222222 22222 3789999999999853
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=1.4e-09 Score=119.02 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCcccHH-------HHHHHhhhcCcEEEEEcCCCc
Q psy16810 90 GFLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVSG 127 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~-------~~~~al~~~D~ailVvda~~g 127 (755)
...++|+||||+.++.. .....++.+|++++|+|+.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 36799999999975422 222457899999999999886
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=116.10 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=59.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
..+|+++|+.|+|||||+++|+.. +... .+ +.+....+...++++......+.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~-~~~~---~~---~~~~~~~~~~~ti~~~~~~~~~~~~------------------ 91 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLT-DLYP---ER---VIPGAAEKIERTVQIEASTVEIEER------------------ 91 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTC-CC---------------------CEEEEEEEEC----------------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCC-CCCC---CC---cccCCCcccCCceeEEEEEEEeecC------------------
Confidence 368999999999999999998542 1111 00 1111111222233332211111111
Q ss_pred CCCeEEEEEcCCCCcccHHHH-------H-------HHhhhc-------------CcEEEEEcC-CCcceehHHHHHHHH
Q psy16810 88 EKGFLINLIDSPGHVDFSSEV-------T-------AALRVT-------------DGALVVVDC-VSGVCVQTETVLRQA 139 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~~~~-------~-------~al~~~-------------D~ailVvda-~~g~~~qt~~~~~~~ 139 (755)
+....++++||||+.|+.... . ..++.+ |+++++|+. ..+.......+++.+
T Consensus 92 ~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l 171 (361)
T 2qag_A 92 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 171 (361)
T ss_dssp CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred CcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence 113479999999996553311 1 333333 357777876 455555554444443
Q ss_pred HHcCCceEEEEeccchh
Q psy16810 140 IAERIKPVLFMNKMDRA 156 (755)
Q Consensus 140 ~~~~ip~iv~iNKiD~~ 156 (755)
..++|+|+|+||+|+.
T Consensus 172 -~~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 172 -HNKVNIVPVIAKADTL 187 (361)
T ss_dssp -CS-SCEEEEEECCSSS
T ss_pred -ccCCCEEEEEECCCCC
Confidence 4678999999999985
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.88 E-value=7.6e-10 Score=119.12 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=43.8
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.++||||||+.++... .++.+|++++|+|+..+...|.... ...++|.++|+||+|+..
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDN 208 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTC
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCC
Confidence 4789999999999887654 3689999999999987754332211 223679999999999864
No 183
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.87 E-value=1.9e-09 Score=123.27 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=79.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+..+|+++|.+|+|||||+++|.... .... .....|+++. +.... +..... ..
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~~~------------~~~t~g~~~~----~~~~~----~~~~v~----~~ 92 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGET--FDPK------------ESQTHGLNVV----TKQAP----NIKGLE----ND 92 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEE----EEEGG----GSGGGT----TC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCC--CCCC------------CCCccceEEE----Eeccc----ccccee----ec
Confidence 345789999999999999999996421 0000 0001112111 10000 000000 00
Q ss_pred cCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC--CceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--IKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~--ip~iv~iNKiD~~~ 157 (755)
.++.+..++++||||+..|.......++.+|++|+|+|++.+ ......+..+..++ +|+++|.||+|+..
T Consensus 93 ~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 93 DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp STTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred CCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 112468999999999999988888889999999999999875 34445556666655 89999999999864
No 184
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.86 E-value=4.4e-09 Score=110.94 Aligned_cols=111 Identities=13% Similarity=0.166 Sum_probs=73.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNEK 89 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (755)
.|.++|..|+|||||+.++.. +... .. ...-+.|+......+ + .
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~~~~----~~---------~~~~~~Tig~~~~~v--~-------------------~ 44 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--NMQP----LD---------TLYLESTSNPSLEHF--S-------------------T 44 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--CCCS----GG---------GTTCCCCCSCCCEEE--C-------------------S
T ss_pred CEEEECCCCCCHHHHHHHHHc--CCCC----Cc---------cceecCeeeeeeEEE--c-------------------c
Confidence 378999999999999987632 1110 00 001123333222211 1 2
Q ss_pred CeEEEEEcCCCCcccHH---HHHHHhhhcCcEEEEEcCCCcceehHHHHHH----HHHH--cCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSS---EVTAALRVTDGALVVVDCVSGVCVQTETVLR----QAIA--ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~---~~~~al~~~D~ailVvda~~g~~~qt~~~~~----~~~~--~~ip~iv~iNKiD~~~ 157 (755)
..+++++||||+.+|.. .....++.++++|+|+|+++. ......-|. .+.. .++|++++.||+|+..
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 46899999999999964 456788999999999999986 333333332 2222 3789999999999853
No 185
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.84 E-value=7.9e-09 Score=103.25 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=71.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.....|+++|.+|+|||||+++|+.....+.. ..+ ..|.+.. ...+.+.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~----------~~~---~~g~d~~--~~~i~~~---------------- 83 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS----------DCE---VLGEDTY--ERTLMVD---------------- 83 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC----------C------CCTTEE--EEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----------cCC---ccceeeE--EEEEEEC----------------
Confidence 34578999999999999999999642222111 000 0111111 1112221
Q ss_pred cCCCCeEEEEEcCCCCcccHHH-HHHHhhhcCcEEEEEcCCCcceehHH-HHHHHHHH----cCCceEEEEeccchhh
Q psy16810 86 KNEKGFLINLIDSPGHVDFSSE-VTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~~-~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||+|....... .....+.+|++|+|+|.++--..+.. ..+..+.. .++|+|+|.||+|+..
T Consensus 84 --~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 84 --GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp --TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred --CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 12456789999998773222 22335678999999998864332222 22333332 3789999999999864
No 186
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.84 E-value=9.8e-09 Score=119.72 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=53.7
Q ss_pred CeEEEEEcCCCCcc-------------cHHHHHHHh-hhcCcEEEEEcCCCcceehHH-HHHHHHHHcCCceEEEEeccc
Q psy16810 90 GFLINLIDSPGHVD-------------FSSEVTAAL-RVTDGALVVVDCVSGVCVQTE-TVLRQAIAERIKPVLFMNKMD 154 (755)
Q Consensus 90 ~~~i~lIDtPGh~d-------------f~~~~~~al-~~~D~ailVvda~~g~~~qt~-~~~~~~~~~~ip~iv~iNKiD 154 (755)
...+.||||||... +...+...+ ..+|.+++|+|++.+...+.. .+++.+...+.|+|+|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 55799999999754 222233333 467999999999999887776 678888888999999999999
Q ss_pred hhh
Q psy16810 155 RAL 157 (755)
Q Consensus 155 ~~~ 157 (755)
+..
T Consensus 229 lv~ 231 (772)
T 3zvr_A 229 LMD 231 (772)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 187
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.83 E-value=6.3e-09 Score=112.34 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=80.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
.-.|+|+|.+|+|||||+++|......+. ..++ .|+......+.|.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~-~~pf---------------tT~~~~~g~~~~~------------------ 117 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAA-EYEF---------------TTLVTVPGVIRYK------------------ 117 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGG-GTCS---------------SCCCEEEEEEEET------------------
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCccc-CCCC---------------ceeeeeeEEEEeC------------------
Confidence 45899999999999999999965322221 1222 3444444455553
Q ss_pred CCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc-----CCceEEEEeccch
Q psy16810 88 EKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLFMNKMDR 155 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~-----~ip~iv~iNKiD~ 155 (755)
+.++.|+||||..+ ....+...++.||.+++|||+.+.+. +-+.+...+... ..|.++++||+|+
T Consensus 118 --~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 118 --GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp --TEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred --CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 78999999999964 34567788999999999999997642 222233334433 3588999999998
Q ss_pred hhhc
Q psy16810 156 ALLE 159 (755)
Q Consensus 156 ~~~~ 159 (755)
.+.+
T Consensus 195 ~gi~ 198 (376)
T 4a9a_A 195 GGIS 198 (376)
T ss_dssp SCEE
T ss_pred hhhh
Confidence 6543
No 188
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.80 E-value=5.4e-09 Score=102.57 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=75.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
....|+++|+.|+|||||+++|+...-... + ...++.......+.+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-----------~-----~~t~~~~~~~~~i~~~----------------- 74 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------S-----KSTIGVEFATRSIQVD----------------- 74 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCS-----------C-----CCCCSEEEEEEEEEET-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------C-----CCccceEEEEEEEEEC-----------------
Confidence 457899999999999999999965321110 0 0011111111222231
Q ss_pred CCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH-HHHHH---cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-RQAIA---ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||||+..|...+...++.+|++++|+|.......+....| ..+.. .+.|+++++||+|+..
T Consensus 75 -g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 75 -GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp -TEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 1234667899999998877777778889999999998875433222222 22322 3678999999999864
No 189
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.79 E-value=1.5e-08 Score=99.46 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=70.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
....|+++|.+|+|||||+++|+.....+..... ..|.+.. ...+.++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~----------------- 52 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-------------VLGEDTY--ERTLMVD----------------- 52 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-------------GGCTTEE--EEEEEET-----------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-------------ccceeEE--EEEEEEC-----------------
Confidence 4578999999999999999999764332221000 0111111 1122221
Q ss_pred CCCCeEEEEEcCCCCccc-HHHHHHHhhhcCcEEEEEcCCCcceehHHH-HHHHHHH----cCCceEEEEeccchhh
Q psy16810 87 NEKGFLINLIDSPGHVDF-SSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIA----ERIKPVLFMNKMDRAL 157 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df-~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~----~~ip~iv~iNKiD~~~ 157 (755)
+....+.++||+|...+ ..-.....+.+|++++|+|.++--..+... .+..+.. .++|++++.||+|+..
T Consensus 53 -~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 53 -GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp -TEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred -CeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 12456789999998652 212233567899999999998743323222 2333332 3789999999999853
No 190
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.75 E-value=3e-09 Score=119.24 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccc------cccCcccccCC-chhhhhhccccccceEEEEeeeCccccccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG------AKAGETRFTDT-RKDEQERCITIKSTAISMYFELDDKDMVFI 78 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~------~~~g~~~~~d~-~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 78 (755)
.+.++|+++|+.|+|||||+.+|.+....... .........++ .......++++.... ...++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~-----~~~dp~~i~~ 173 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSY-----TEMDPVIIAS 173 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECC-----CCSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccC-----CCCCHHHHHH
Confidence 45789999999999999999999865431100 00000000010 011122344322110 0000000000
Q ss_pred cCCCccccCCCCeEEEEEcCCCCc----ccHHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEe
Q psy16810 79 TNPDQTAKNEKGFLINLIDSPGHV----DFSSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMN 151 (755)
Q Consensus 79 ~~~~~~~~~~~~~~i~lIDtPGh~----df~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iN 151 (755)
+ ........++.+.||||||.. ++..++....+ .+|.+++|||+..|.. ....++.... .+|+ ++++|
T Consensus 174 ~--al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlN 248 (504)
T 2j37_W 174 E--GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVT 248 (504)
T ss_dssp H--HHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEE
T ss_pred H--HHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEe
Confidence 0 000001146789999999996 34555544333 7899999999999853 2222232222 2785 89999
Q ss_pred ccchh
Q psy16810 152 KMDRA 156 (755)
Q Consensus 152 KiD~~ 156 (755)
|+|..
T Consensus 249 K~D~~ 253 (504)
T 2j37_W 249 KLDGH 253 (504)
T ss_dssp CTTSC
T ss_pred CCccc
Confidence 99985
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.75 E-value=1.9e-09 Score=116.72 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=45.3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.+.||||||... .....+..+|.+++|+|+..+...+... .....+|.++++||+|+..
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADGEH 231 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCGGG
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCCcC
Confidence 468899999999654 3334458999999999988765544322 1123469999999999864
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.73 E-value=4.7e-09 Score=105.31 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=71.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccc-----cccCcccccCCchhhhhh-ccccccceEEEEeeeCcccccccc-
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG-----AKAGETRFTDTRKDEQER-CITIKSTAISMYFELDDKDMVFIT- 79 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~-----~~~g~~~~~d~~~~E~~r-giTi~~~~~~~~~~~~~~~~~~~~- 79 (755)
++++|+++|+.|+|||||+++|+.......+ ...+.+ .| .....+ |+++. .+.... .+....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~--~d--~~~~~~~~~~~~------~~~~~~-~~~~~~~ 97 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK--AD--YERVRRFGIKAE------AISTGK-ECHLDAH 97 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH--HH--HHHHHTTTCEEE------ECCCTT-CSSCCHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc--hh--HHHHHhCCCcEE------EecCCc-eeecccH
Confidence 5789999999999999999999876432110 011110 11 111111 33211 111000 000000
Q ss_pred CCCccccCCCCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 80 ~~~~~~~~~~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
..........++.+.+|||||..+--.. .-...+.+++|+|+..+.. ..|......++|.++++||+|+..
T Consensus 98 ~~~~~~~~~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 98 MIYHRLKKFSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp HHHTTGGGGTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCCc
Confidence 0000000123678999999994211000 0024578999999988743 234444556799999999999864
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.61 E-value=2.3e-08 Score=107.72 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.++.+.|+||||..+-. ......+|.+++|+|+..|...|... . .....|.++++||+|+..
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~---~-~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK---R-GIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH---H-HHHhcCCEEEEeeecCCC
Confidence 46789999999975322 23357899999999998875333211 1 224679999999999853
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.59 E-value=2.4e-08 Score=102.94 Aligned_cols=67 Identities=18% Similarity=0.061 Sum_probs=46.3
Q ss_pred CeEEEEEcCCCCcccHH------HHHHHhhhcCcEEEEEcCCCcceehHHH-H----HHHHHHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSS------EVTAALRVTDGALVVVDCVSGVCVQTET-V----LRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~------~~~~al~~~D~ailVvda~~g~~~qt~~-~----~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++.+.||||||..++.. .+..++.. |.+|+|+|+..+....... . +......++|.++++||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 46899999999987643 23345555 7888999987765544322 1 1223456899999999999853
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.52 E-value=1.8e-07 Score=102.67 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
..|+|+|++|+|||||+++|......+ .++ ...|+......+.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i----------~~~------~ftTl~p~~G~V~~~------------------- 202 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI----------APY------PFTTLSPNLGVVEVS------------------- 202 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE----------CCC------TTCSSCCEEEEEECS-------------------
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc----------cCc------ccceecceeeEEEec-------------------
Confidence 468999999999999999984321111 111 011233332333332
Q ss_pred CCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHH-----cCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA-----ERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~-----~~ip~iv~iNKiD~~ 156 (755)
....++++||||+.+ +.....+.+..+|.++.|+|+......+....+++... .+.|.++++||+|..
T Consensus 203 ~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 203 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred CcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 136789999999854 22344455667999999999972222222223333332 357999999999985
Q ss_pred h
Q psy16810 157 L 157 (755)
Q Consensus 157 ~ 157 (755)
.
T Consensus 283 ~ 283 (416)
T 1udx_A 283 E 283 (416)
T ss_dssp C
T ss_pred h
Confidence 3
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.50 E-value=1.6e-07 Score=100.80 Aligned_cols=113 Identities=21% Similarity=0.164 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
.+|+|+|++|+|||||+++|+... ......++ .|+......+.++. ....+... .......
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~---------------tTi~p~~g~v~~~~--~r~~~l~~-~~~~~~~ 63 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPF---------------CTIEPNTGVVPMPD--PRLDALAE-IVKPERI 63 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CC---------------CCCCCCSSEEECCC--HHHHHHHH-HHCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCC---------------ceECceEEEEecCC--cccceeee-eecccce
Confidence 479999999999999999997643 11111112 12222222222210 00000000 0000000
Q ss_pred CCeEEEEEcCCCCcccHH-------HHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~-------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
....++|+||||..++.. ...+.++.+|++++|+|+.+ ..+++.+.||+|-.
T Consensus 64 ~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~----------------~~~v~~v~~~~dp~ 122 (363)
T 1jal_A 64 LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE----------------NDDIVHVAGKIDPL 122 (363)
T ss_dssp ECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC----------------C---------CCHH
T ss_pred eeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC----------------CCceeeecCCcChH
Confidence 135799999999988753 24556899999999999988 23556778888853
No 197
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.48 E-value=5.8e-08 Score=99.89 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=28.8
Q ss_pred hcCcEEEEEcCCCc--ceehHH-HHHHHH----HHcCCceEEEEeccchh
Q psy16810 114 VTDGALVVVDCVSG--VCVQTE-TVLRQA----IAERIKPVLFMNKMDRA 156 (755)
Q Consensus 114 ~~D~ailVvda~~g--~~~qt~-~~~~~~----~~~~ip~iv~iNKiD~~ 156 (755)
.+|++|+|+|+++. ...+.. ..+..+ ...++|++++.||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999875 322222 222222 23579999999999985
No 198
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.35 E-value=2.1e-06 Score=88.78 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-|++++|+.|+|||||++.|+..... ..|+..+... +. .-+.....+.+.++ ...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~----~~G~i~~~g~-~i----~~~~~~~~i~~v~q----------------~~~ 57 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS----RKASSWNREE-KI----PKTVEIKAIGHVIE----------------EGG 57 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-----------------C----CCCCSCCEEEESCC-------------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC----CCCccccCCc-cc----CcceeeeeeEEEee----------------cCC
Confidence 58999999999999999999764322 1222111100 00 00111111222111 000
Q ss_pred CCeEEEEEcCCCCccc-------------HH-----HHHHH----------hhhcCcEEEEEcCC-CcceehHHHHHHHH
Q psy16810 89 KGFLINLIDSPGHVDF-------------SS-----EVTAA----------LRVTDGALVVVDCV-SGVCVQTETVLRQA 139 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df-------------~~-----~~~~a----------l~~~D~ailVvda~-~g~~~qt~~~~~~~ 139 (755)
-...++++|+||+.+. .. ..... +..++++++++|.. +|..++...+++.+
T Consensus 58 ~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 58 VKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp -CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHH
T ss_pred CcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHH
Confidence 1236899999998431 11 01111 11246788999954 89999998888888
Q ss_pred HHcCCceEEEEeccchh
Q psy16810 140 IAERIKPVLFMNKMDRA 156 (755)
Q Consensus 140 ~~~~ip~iv~iNKiD~~ 156 (755)
.+. +++|+++||+|..
T Consensus 138 ~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 138 SKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HTT-SEEEEEETTGGGS
T ss_pred Hhc-CcEEEEEeccccC
Confidence 776 9999999999984
No 199
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.30 E-value=9.8e-08 Score=103.57 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=68.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc-----CCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA-----GIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQ 83 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~-----g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (755)
++|+++|.+|+|||||+++|+... ........ |.|.... .+.+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~---------------gtT~~~~--~~~~--------------- 210 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP---------------GTTLDMI--EIPL--------------- 210 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT---------------TSSCEEE--EEEC---------------
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC---------------CeEEeeE--EEEe---------------
Confidence 689999999999999999998752 11111111 3333211 1222
Q ss_pred cccCCCCeEEEEEcCCCCcccH-------HHHHHHh---hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEecc
Q psy16810 84 TAKNEKGFLINLIDSPGHVDFS-------SEVTAAL---RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKM 153 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~df~-------~~~~~al---~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKi 153 (755)
+..++++||||..+.. .+....+ ...|.+++++++...........+.+....++|+++++||+
T Consensus 211 ------~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~ 284 (369)
T 3ec1_A 211 ------ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANE 284 (369)
T ss_dssp ------STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTT
T ss_pred ------CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCC
Confidence 2237899999985432 2233333 66799999999854322111111233344578999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|...
T Consensus 285 d~~~ 288 (369)
T 3ec1_A 285 LTVH 288 (369)
T ss_dssp SCEE
T ss_pred cccc
Confidence 9853
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.29 E-value=2.5e-06 Score=93.53 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=60.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-+|+|+|+.|+|||||+++|+...-... ..+... .+. .-|+....+.+.+. ..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~--~~~~~~-~~~-------~~t~~~~~i~~v~q----------------~~~ 85 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSP--EYPGPS-HRI-------KKTVQVEQSKVLIK----------------EGG 85 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCC--CCCSCC-------------CCEEEEEECC---------------------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCC--CCCCcc-cCC-------ccceeeeeEEEEEe----------------cCC
Confidence 4689999999999999999954221111 011100 000 01111111111111 001
Q ss_pred CCeEEEEEcCCCCcccHH------HHH--------HH-----------hhhcC--cEEEEEcCC-CcceehHHHHHHHHH
Q psy16810 89 KGFLINLIDSPGHVDFSS------EVT--------AA-----------LRVTD--GALVVVDCV-SGVCVQTETVLRQAI 140 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~------~~~--------~a-----------l~~~D--~ailVvda~-~g~~~qt~~~~~~~~ 140 (755)
....++++||||+.++.. .+. .. ++.++ .+|++++++ .|..+....+++.+.
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~ 165 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH 165 (418)
T ss_dssp -CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT
T ss_pred cccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh
Confidence 234789999999977532 110 11 12233 355555555 577777766666554
Q ss_pred HcCCceEEEEeccchh
Q psy16810 141 AERIKPVLFMNKMDRA 156 (755)
Q Consensus 141 ~~~ip~iv~iNKiD~~ 156 (755)
.++|+|+|+||+|+.
T Consensus 166 -~~v~iIlVinK~Dll 180 (418)
T 2qag_C 166 -EKVNIIPLIAKADTL 180 (418)
T ss_dssp -TTSEEEEEEESTTSS
T ss_pred -ccCcEEEEEEcccCc
Confidence 489999999999984
No 201
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.27 E-value=2.9e-06 Score=92.74 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=72.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
+.|++|+|+.|+|||||++.|+... +. |.. .... ..+.+.. .+.+.++. .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~--l~----g~~-~~~~-----~~~~~~~--~i~~v~Q~----------------~ 91 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTK--FE----GEP-ATHT-----QPGVQLQ--SNTYDLQE----------------S 91 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSC--C------------C-----CSSCEEE--EEEEEEEC-----------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcc--cc----CCc-CCCC-----CccceEe--eEEEEeec----------------C
Confidence 4679999999999999999996531 11 110 0000 0111211 22333320 0
Q ss_pred CCCeEEEEEcCCCCcccH-------------H-HHHHHhh-------------hc--C-cEEEEEcCCCcceehHHHHHH
Q psy16810 88 EKGFLINLIDSPGHVDFS-------------S-EVTAALR-------------VT--D-GALVVVDCVSGVCVQTETVLR 137 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~-------------~-~~~~al~-------------~~--D-~ailVvda~~g~~~qt~~~~~ 137 (755)
.-...++++|+||..+.. . .....+. .+ | .+++|+|+..|......++++
T Consensus 92 ~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk 171 (427)
T 2qag_B 92 NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMK 171 (427)
T ss_dssp -CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHH
T ss_pred ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHH
Confidence 011368999999986431 1 1111111 11 2 356778888898888877777
Q ss_pred HHHHcCCceEEEEeccchhhhcccCCHHHHHHHHHHH
Q psy16810 138 QAIAERIKPVLFMNKMDRALLELQLDAEDLYQTFQRI 174 (755)
Q Consensus 138 ~~~~~~ip~iv~iNKiD~~~~~~~~~~~~~~~~~~~i 174 (755)
.+. .++|+|+++||.|.. +..++...+..+
T Consensus 172 ~L~-~~~~vI~Vi~KtD~L------t~~E~~~l~~~I 201 (427)
T 2qag_B 172 KLD-SKVNIIPIIAKADAI------SKSELTKFKIKI 201 (427)
T ss_dssp HTC-SCSEEEEEESCGGGS------CHHHHHHHHHHH
T ss_pred HHh-hCCCEEEEEcchhcc------chHHHHHHHHHH
Confidence 665 788999999999984 455544433333
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.24 E-value=2.2e-06 Score=92.43 Aligned_cols=97 Identities=18% Similarity=0.163 Sum_probs=57.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCc--cccccccCCCcccc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDD--KDMVFITNPDQTAK 86 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 86 (755)
.+|+|+|++|+|||||+++|+.....+. ..++ .|+........+.... ..+... ...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~-~~p~---------------~Ti~pn~g~~~v~~~~l~~~~~~~-----~~~ 60 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAA-NYPF---------------ATIDKNVGVVPLEDERLYALQRTF-----AKG 60 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCS-SCCG---------------GGGSTTEEEEECCCHHHHHHHHHH-----CBT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCccc-CCCC---------------ceeccceeeEecChHHHHHHHHHh-----ccc
Confidence 4799999999999999999976531111 0111 1333322222211000 000000 000
Q ss_pred C----CCCeEEEEEcCCCCccc-------HHHHHHHhhhcCcEEEEEcCCC
Q psy16810 87 N----EKGFLINLIDSPGHVDF-------SSEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 87 ~----~~~~~i~lIDtPGh~df-------~~~~~~al~~~D~ailVvda~~ 126 (755)
+ .....++|+||||..++ .......++.+|++++|+|+.+
T Consensus 61 ~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 0 02468999999999875 2456678899999999999987
No 203
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.22 E-value=1.4e-06 Score=96.12 Aligned_cols=63 Identities=22% Similarity=0.250 Sum_probs=43.3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHh------hhcCcEEEEEcCCCcceehHHHHHHHHHHc--CC-c-eEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAAL------RVTDGALVVVDCVSGVCVQTETVLRQAIAE--RI-K-PVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al------~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~i-p-~iv~iNKiD~~ 156 (755)
.++.+.||||||...........+ ..+|.+++|+|+..|. . .+.++..+ ++ | ..+++||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~---~~~~~~~~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q---AGIQAKAFKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G---HHHHHHHHHTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H---HHHHHHHHhhcccCCeEEEEeCCCCc
Confidence 467899999999876433333322 2578999999998874 2 23333333 46 7 68999999974
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.20 E-value=2.6e-06 Score=92.26 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=50.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCcccc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAK 86 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (755)
.-..|+|+|.+|+|||||+++|....- .....+ +.|+......+.+. +....+... .....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p---------------~tTi~p~~g~v~v~--~~r~~~l~~-~~~p~ 81 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFP---------------FCTIDPNESRVPVP--DERFDFLCQ-YHKPA 81 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECC--CHHHHHHHH-HHCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCC---------------ccccCceeEEEEEC--Cccceeecc-ccCcc
Confidence 346799999999999999999964321 111111 22333333333321 000000000 00000
Q ss_pred CCCCeEEEEEcCCCCcccHH-------HHHHHhhhcCcEEEEEcCCC
Q psy16810 87 NEKGFLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 87 ~~~~~~i~lIDtPGh~df~~-------~~~~al~~~D~ailVvda~~ 126 (755)
..-...++|+||||...+.. .....++.+|++++|+|+.+
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 00134699999999988665 56778899999999999975
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.19 E-value=3.4e-07 Score=99.20 Aligned_cols=116 Identities=9% Similarity=0.058 Sum_probs=66.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCc-cccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGII-AGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKN 87 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (755)
++|+++|.+|+|||||+++|+...... .. .. .. ....|.|.... .+.+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~-~~---~~------~~~~gtT~~~~--~~~~------------------- 209 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETEN-VI---TT------SHFPGTTLDLI--DIPL------------------- 209 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSS-CC---EE------ECCC----CEE--EEES-------------------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccc-ce---ec------CCCCCeecceE--EEEe-------------------
Confidence 689999999999999999998763211 10 00 00 00112332211 1222
Q ss_pred CCCeEEEEEcCCCCcccH-------HHHHHH---hhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 88 EKGFLINLIDSPGHVDFS-------SEVTAA---LRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 88 ~~~~~i~lIDtPGh~df~-------~~~~~a---l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+..+.++||||..+.. .+.... ....|..++++++...........+.+....++|+++|+||+|...
T Consensus 210 --~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 210 --DEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp --SSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred --cCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 1237899999995432 222222 2566889999998543222111112233345789999999999853
No 206
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.18 E-value=2e-06 Score=94.89 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=42.7
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHh------hhcCcEEEEEcCCCcceehHHHHHHHHHHc--CCce-EEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAAL------RVTDGALVVVDCVSGVCVQTETVLRQAIAE--RIKP-VLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al------~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~-iv~iNKiD~~ 156 (755)
.++.+.||||||...+...+..++ ..+|.+++|+|+..|. . . +.++..+ ++++ -+++||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~-~-~---~~~~~~f~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ-D-A---ANTAKAFNEALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT-T-H---HHHHHHHHHHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH-H-H---HHHHHHHhccCCCeEEEEecCCCC
Confidence 367899999999877655554443 3578999999998772 1 1 2223322 3553 4789999974
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.16 E-value=6.3e-06 Score=86.73 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=59.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-+|+++|+.|+|||||+++|+...-... .| ... +..+. .. |+......+.++ ..+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~-~g~~~--~~--t~~~~~~~~~~q----------------~~~ 73 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPE---RV-ISG-AAEKI--ER--TVQIEASTVEIE----------------ERG 73 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC-------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCC---CC-ccc-CCccc--CC--cceEeeEEEEec----------------CCC
Confidence 5789999999999999999853211111 11 000 00000 00 111111122221 011
Q ss_pred CCeEEEEEcCCCC-------cccHHHHH-------HHhhhcC-------------cEEEEEcCCC-cceehHHHHHHHHH
Q psy16810 89 KGFLINLIDSPGH-------VDFSSEVT-------AALRVTD-------------GALVVVDCVS-GVCVQTETVLRQAI 140 (755)
Q Consensus 89 ~~~~i~lIDtPGh-------~df~~~~~-------~al~~~D-------------~ailVvda~~-g~~~qt~~~~~~~~ 140 (755)
....++++||||+ ..|..-+. ..++.+. .++++++... |..+....+++.+.
T Consensus 74 ~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~ 153 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH 153 (301)
T ss_dssp CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT
T ss_pred cccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH
Confidence 2467999999998 33322222 2333222 2555566544 57776655555443
Q ss_pred HcCCceEEEEeccchh
Q psy16810 141 AERIKPVLFMNKMDRA 156 (755)
Q Consensus 141 ~~~ip~iv~iNKiD~~ 156 (755)
.++|+++++||.|+.
T Consensus 154 -~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 154 -NKVNIVPVIAKADTL 168 (301)
T ss_dssp -TTSCEEEEECCGGGS
T ss_pred -hcCCEEEEEEeCCCC
Confidence 367999999999985
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.10 E-value=2.2e-06 Score=91.76 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.++.+.||||||..+-.. .....+|.+++|+|+..|...+. +.. ....+|.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~--~i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKK--GIFELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCT--THHHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHH--HHhccccEEEEEchhcc
Confidence 478899999999865322 23478999999999875532111 000 01134778999999963
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=4.5e-06 Score=87.54 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=44.1
Q ss_pred CCeEEEEEcCCCCcc--cHHHHH------HHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVD--FSSEVT------AALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d--f~~~~~------~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~~ 156 (755)
.++.+.||||||... ....+. ..+..+|.+++|+|+..| .++....+.... .+| ..+++||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 367899999999877 433332 345578999999999865 223333332222 577 57899999974
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.02 E-value=4.8e-06 Score=91.47 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCCcc------cHHHHHHHhhh--cCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVD------FSSEVTAALRV--TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d------f~~~~~~al~~--~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
.++.+.+|||||... +..++....+. .|.+++|+|+..|... ..+.+...+.--+..+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc
Confidence 367889999999755 55665554443 4899999999987432 222232232224678999999975
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.01 E-value=1.7e-05 Score=86.05 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=59.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCc--cccccccCCCc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDD--KDMVFITNPDQ 83 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~--~~~~~~~~~~~ 83 (755)
.+-..|+|+|++|+|||||+++|...........++ .|+......+.+.... ..+...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~---------------tTi~p~~G~v~v~~~r~~~l~~~~----- 77 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY---------------ATIDPEEAKVAVPDERFDWLCEAY----- 77 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS---------------CCCCTTEEEEEECCHHHHHHHHHH-----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCc---------------eeecceeeeeeeCCcchhhhhhhc-----
Confidence 344689999999999999999997643212211222 2333332333332000 000000
Q ss_pred cccCCCCeEEEEEcCCCCcc-------cHHHHHHHhhhcCcEEEEEcCCC
Q psy16810 84 TAKNEKGFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 84 ~~~~~~~~~i~lIDtPGh~d-------f~~~~~~al~~~D~ailVvda~~ 126 (755)
.....-+..+.++||||... +.......++.+|+++.|+|+.+
T Consensus 78 ~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 78 KPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00000124689999999754 44567788899999999999976
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.96 E-value=4.3e-05 Score=83.88 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=40.5
Q ss_pred CeEEEEEcCCCCccc----HHHHHH--HhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDF----SSEVTA--ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df----~~~~~~--al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
++.+.||||||.... ..++.. ....+|.+++|+||..|... ....+.....--+..+++||+|..
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSC
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCc
Confidence 578999999997443 333322 23346999999999987322 222222222222446899999985
No 213
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.81 E-value=1.3e-05 Score=80.10 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCcccHHHHHHHh-hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAAL-RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al-~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+..+.++||+|...-. ..+ ...+..+.|+|+..+...... .....+.|.++++||+|+..
T Consensus 118 ~~d~~~id~~g~i~~~----~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP----ADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLAD 178 (226)
T ss_dssp GCSEEEEECCSCSSGG----GGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHH
T ss_pred CCCEEEEeCCCCccCc----chhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCc
Confidence 4478999999952210 011 234567788887654432221 12235789999999999864
No 214
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.81 E-value=2.8e-05 Score=76.69 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=60.4
Q ss_pred CCCCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCe
Q psy16810 287 PNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNI 366 (755)
Q Consensus 287 ~~~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdI 366 (755)
.++||++.|..+|. +.|+ +..|||.+|++++||.|.+++.+ .+ .+|.+|... .+++++|.|||+
T Consensus 3 ~~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~~-----~~V~~I~~~----~~~~~~A~aGd~ 66 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----HN-----VEVLGILSD----DVETDTVAPGEN 66 (204)
T ss_dssp ----CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----EE-----EEEEEECSS----SSCBSEECTTSE
T ss_pred CCCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----CE-----EEEEEEEEC----CEEeEEECCCCE
Confidence 36899999999976 5787 89999999999999999988642 22 256666433 367999999999
Q ss_pred EEe--ccccceeee-cceeecCC
Q psy16810 367 CGL--VGVDQFLVK-TGTITTFK 386 (755)
Q Consensus 367 vai--~gl~~~~~~-~gTl~~~~ 386 (755)
|++ .|++...+. |+++++++
T Consensus 67 V~l~L~gi~~~di~rG~vl~~~~ 89 (204)
T 3e1y_E 67 LKIRLKGIEEEEILPGFILCDPN 89 (204)
T ss_dssp EEEEEEESSSSCCCTTCEEBCSS
T ss_pred EEEEEcCCCHHHCccceEEECCC
Confidence 998 677643344 44777654
No 215
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.73 E-value=3.1e-05 Score=88.20 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTA 85 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (755)
.+...|+|+|.+++|||||+++|+.....+. .+++++ +.|- ....|... .
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~--~~~tt~-----------~~T~----gi~~~~~~-------------~ 85 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFS--LGSTVQ-----------SHTK----GIWMWCVP-------------H 85 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSC--CCCSSS-----------CCCC----SEEEEEEE-------------C
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccc--cCCCCC-----------Ccee----EEEEeecc-------------c
Confidence 4568899999999999999999965432221 122111 1111 11123100 0
Q ss_pred cCCCCeEEEEEcCCCCcccHH------HHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC
Q psy16810 86 KNEKGFLINLIDSPGHVDFSS------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER 143 (755)
Q Consensus 86 ~~~~~~~i~lIDtPGh~df~~------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ 143 (755)
....+..+.||||||..+... ....++...-.+++|+|+..++..+...++..+.+.+
T Consensus 86 ~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~ 149 (592)
T 1f5n_A 86 PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELT 149 (592)
T ss_dssp SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHH
T ss_pred ccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHh
Confidence 011367899999999965432 2222344433458889999999888887777665544
No 216
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.58 E-value=0.00014 Score=71.24 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=53.4
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC-----CceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-----IKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-----ip~iv~iNKiD~~ 156 (755)
.|.+.+||||+.. ...+..++..+|.+|+|+.+...- ..+...++.+.+.+ +++.+++|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999976 467788999999999999998877 77888888777654 6778999999963
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.51 E-value=0.00035 Score=76.31 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCchhhhhhccccccceEEEEeeeCccccccccCCCccccCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFITNPDQTAKNE 88 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (755)
-+++|+|+.|+|||||++.|+.. ... ..|+.. .+..+..+ ++ ..++. .
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl---~~p-~~GsI~-~~g~~~t~-~~---------~v~q~-----------------~ 117 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI---GNE-EEGAAK-TGVVEVTM-ER---------HPYKH-----------------P 117 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC---CTT-STTSCC-CCC----C-CC---------EEEEC-----------------S
T ss_pred eEEEEECCCCCcHHHHHHHHhCC---CCc-cCceEE-ECCeecce-eE---------Eeccc-----------------c
Confidence 38999999999999999999652 211 112211 11111000 01 12220 0
Q ss_pred CCeEEEEEcCCCCcc---cHHHHHHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhhh
Q psy16810 89 KGFLINLIDSPGHVD---FSSEVTAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALL 158 (755)
Q Consensus 89 ~~~~i~lIDtPGh~d---f~~~~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~~ 158 (755)
....++++|+||... -..+....+ ...|..++ +|+.. .+.|...+.+.+...+.|+++++||.|....
T Consensus 118 ~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 122578999999742 123333322 23344443 66543 4677777778788889999999999998753
No 218
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.46 E-value=0.00024 Score=81.96 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=38.7
Q ss_pred eEEEEEcCCCCccc---------HHHHHHHhhh----c-CcEEEEEcCCCcceeh-HHHHHHHHHHcCCceEEEEeccch
Q psy16810 91 FLINLIDSPGHVDF---------SSEVTAALRV----T-DGALVVVDCVSGVCVQ-TETVLRQAIAERIKPVLFMNKMDR 155 (755)
Q Consensus 91 ~~i~lIDtPGh~df---------~~~~~~al~~----~-D~ailVvda~~g~~~q-t~~~~~~~~~~~ip~iv~iNKiD~ 155 (755)
-.+.|+|.||...- ...+...++. . ..+++++++......+ ...+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46899999986431 2233333322 2 4566677766554422 233444444457899999999998
Q ss_pred hh
Q psy16810 156 AL 157 (755)
Q Consensus 156 ~~ 157 (755)
..
T Consensus 227 v~ 228 (608)
T 3szr_A 227 VD 228 (608)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 219
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.44 E-value=7.4e-05 Score=80.13 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=54.3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-----------eehHHHHHHHHHH----cCCceEEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-----------CVQTETVLRQAIA----ERIKPVLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-----------~~qt~~~~~~~~~----~~ip~iv~iNKi 153 (755)
++..+.++||+|+..|..-.....+.+|++|+|+|.++-- .......|..... .++|+|+|.||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 3688999999999999999999999999999999998731 1223344444433 468999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 271 DL~~ 274 (353)
T 1cip_A 271 DLFE 274 (353)
T ss_dssp HHHH
T ss_pred Cchh
Confidence 9853
No 220
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.36 E-value=0.00016 Score=76.43 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=40.5
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhh------------hcCcEEEEEcCCCcceehHHHHHHHHHHcC--Cce-EEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALR------------VTDGALVVVDCVSGVCVQTETVLRQAIAER--IKP-VLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~------------~~D~ailVvda~~g~~~qt~~~~~~~~~~~--ip~-iv~iNKi 153 (755)
.+|.+.||||||...........+. .+|.+++|+|+..| | ..+.++..++ +++ =+++||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~---~--~~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG---Q--NGVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT---H--HHHHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc---H--HHHHHHHHHhhcCCCcEEEEeCC
Confidence 4688999999998664333332221 26889999999865 1 2233444433 444 4789999
Q ss_pred chh
Q psy16810 154 DRA 156 (755)
Q Consensus 154 D~~ 156 (755)
|..
T Consensus 265 d~~ 267 (320)
T 1zu4_A 265 DST 267 (320)
T ss_dssp GGC
T ss_pred CCC
Confidence 974
No 221
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.31 E-value=0.00021 Score=75.86 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCC-----------cceehHHHHHHHHHH----cCCceEEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS-----------GVCVQTETVLRQAIA----ERIKPVLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~-----------g~~~qt~~~~~~~~~----~~ip~iv~iNKi 153 (755)
++..+.++||+|+..|..-+....+.++++|+|+|.++ .-.......|..... .++|+++|.||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 46889999999999999999999999999999999872 111223344444433 468999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 239 DL~~ 242 (340)
T 4fid_A 239 DLFE 242 (340)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9864
No 222
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.31 E-value=0.00013 Score=78.57 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCc---------c--eehHHHHHHHHHH----cCCceEEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG---------V--CVQTETVLRQAIA----ERIKPVLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g---------~--~~qt~~~~~~~~~----~~ip~iv~iNKi 153 (755)
++..+.++||+|+..|..-....++.++++|+|+|.++- . .......|..... .++|+|+|.||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 368899999999999998888899999999999999872 1 1223344544433 368999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 279 DL~~ 282 (362)
T 1zcb_A 279 DLLE 282 (362)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9863
No 223
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.23 E-value=0.00063 Score=67.26 Aligned_cols=65 Identities=8% Similarity=-0.060 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCC-cccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHc-CCceEEEEeccchh
Q psy16810 90 GFLINLIDSPGH-VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-RIKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh-~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~-~ip~iv~iNKiD~~ 156 (755)
.|.+.+||||+. ... .+..++..+|.+|+++.+...-...+...++.+.+. +.+..+++|+.|..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 578999999997 543 566788999999999998877667777777777774 77888999999974
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.14 E-value=0.00032 Score=72.80 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
...+|+++|.+|+|||||+++|+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCceEEEEecCCCchHHHHHHHhcC
Confidence 3468999999999999999999754
No 225
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.14 E-value=0.00034 Score=75.94 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCC----------cc-eehHHHHHHHHHH----cCCceEEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS----------GV-CVQTETVLRQAIA----ERIKPVLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~----------g~-~~qt~~~~~~~~~----~~ip~iv~iNKi 153 (755)
++..+.++||+|+..|..-+...++.++++|+|+|.++ -- .......|..... .++|+++|.||+
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 36889999999999999999999999999999999987 11 1122334444433 357999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 295 DL~~ 298 (402)
T 1azs_C 295 DLLA 298 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9854
No 226
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.14 E-value=0.00074 Score=71.55 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=38.6
Q ss_pred CeEEEEEcCCCCcc----cHHHHHHHh--hhcCcEEEEEcCCCcceehHHHHHHHHHHcC--C-ceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVD----FSSEVTAAL--RVTDGALVVVDCVSGVCVQTETVLRQAIAER--I-KPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~d----f~~~~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~--i-p~iv~iNKiD~~ 156 (755)
++.+.++||+|... +..++.... -..|-.++|+|+..|- + ++.++..++ . ..++++||+|..
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~---~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--A---IVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--H---HHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--H---HHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 45567899999843 444433222 2468899999988762 2 333333332 2 347889999963
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.13 E-value=0.001 Score=72.73 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=39.9
Q ss_pred CCeEEEEEcCCCCccc----HHHHHH--HhhhcCcEEEEEcCCCcceehHHHHHHHHHHc--CCc-eEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDF----SSEVTA--ALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--RIK-PVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df----~~~~~~--al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip-~iv~iNKiD~~ 156 (755)
.++.+.||||||.... ..++.. .+..+|.+++|+|+..|. .. +.++..+ .++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~a---v~~a~~f~~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EA---LSVARAFDEKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HH---HHHHHHHHHHTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HH---HHHHHHHHhcCCceEEEEeCcCCc
Confidence 4678999999998644 233222 223579999999998651 12 2233322 354 46789999974
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.12 E-value=0.00096 Score=73.93 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-..|+|+|..|+|||||+..|...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 358999999999999999998654
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.06 E-value=0.00067 Score=71.17 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.-+.|+++|+.|+||||++..|...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3568999999999999999999654
No 230
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.05 E-value=0.0012 Score=69.07 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-..|+|+|+.|+|||||+..|...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3568999999999999999999654
No 231
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.98 E-value=0.00092 Score=70.61 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCC-------Ccc----eehHHHHHHHHHH----cCCceEEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCV-------SGV----CVQTETVLRQAIA----ERIKPVLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~-------~g~----~~qt~~~~~~~~~----~~ip~iv~iNKi 153 (755)
++..+.++||+|+..|..-+....+.++++|+|+|.+ +.- .......|..... .++|+++|.||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 4689999999999999988889999999999999765 211 1123344444432 468999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 245 DL~~ 248 (327)
T 3ohm_A 245 DLLE 248 (327)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9975
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.95 E-value=0.00062 Score=71.14 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=38.2
Q ss_pred CeEEEEEcCCCCcccHHHHH----HHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHcC-Cc-eEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVT----AALR--VTDGALVVVDCVSGVCVQTETVLRQAIAER-IK-PVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~----~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip-~iv~iNKiD~~ 156 (755)
++.+.||||||......... ..+. ..|.+++|+|+..+.. .+.+.+..+. ++ .-+++||+|..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 56899999999865543322 2232 2577899999886531 2222233332 22 34667999974
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.94 E-value=0.0025 Score=70.05 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.++-.|+|+|..++|||||+++|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 46788999999999999999999875
No 234
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.83 E-value=0.0013 Score=68.96 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHH----cCCceE-EEEeccch
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPV-LFMNKMDR 155 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~----~~ip~i-v~iNKiD~ 155 (755)
+.|.+.+||||+..... .+..++..+|.+|+|+.+...-...+..+++.+.. .+++++ +++|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46889999999875432 33467899999999998776545555666666664 355655 89999985
No 235
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.80 E-value=0.0027 Score=62.06 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=94.8
Q ss_pred CCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeee
Q psy16810 591 EENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 670 (755)
Q Consensus 591 ~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~ 670 (755)
+.-+.||.|.++-+- .-...++|-++.|-..|.++|+.+++.+-..|...+.|++|-..+|+|...|.+..+.|++.
T Consensus 92 ~~~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~ 168 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINS 168 (217)
T ss_dssp HHTCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEce
Confidence 445788888877542 12345666688899999999999999999999999999999999999999999999999888
Q ss_pred eecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeE
Q psy16810 671 MQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQ 708 (755)
Q Consensus 671 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~ 708 (755)
+..+ .+.++..+|..+.-.|...|..+|+|++.+.
T Consensus 169 ~y~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 169 DYQA---FVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp EESS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 8643 3789999999999999999999999998643
No 236
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.69 E-value=0.0027 Score=63.94 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCc-eEEEEeccch
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDR 155 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~iv~iNKiD~ 155 (755)
..|.+.+||||+..+. .+..++..+|.+|+|+.+...-...+..+.+.+...+++ ..+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4788999999987654 567788999999999998765556667777777888875 4689999985
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.69 E-value=0.00067 Score=69.59 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.+++++|.+|+|||||+++|+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 5899999999999999999974
No 238
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.68 E-value=0.0041 Score=59.60 Aligned_cols=111 Identities=22% Similarity=0.184 Sum_probs=93.2
Q ss_pred CCCeeeEEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCceeecEEEEEEEeeccchhhHHHHhhcccceeeee
Q psy16810 591 EENLRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 670 (755)
Q Consensus 591 ~~pv~~v~v~l~d~~~~~~~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~ 670 (755)
+.-+.||.+.+.-+- .-...++|-++.|-..|.++|+..++.+-..|...+.|++|-..+|+|...|.+.. .|.+.
T Consensus 80 ~~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 556888888887542 11234566688888999999999999999999999999999999999999999988 98887
Q ss_pred eecCCCccEEEEEEecchhhcCchHHHhhhcCCccee
Q psy16810 671 MQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFP 707 (755)
Q Consensus 671 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~ 707 (755)
+..+. .+.++..+|..+.-.|...|..+|+|++.+
T Consensus 156 ~y~~~--gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYTPE--GVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEETT--EEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEcCC--eEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 76532 178899999999999999999999999754
No 239
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.64 E-value=0.0023 Score=66.77 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=38.4
Q ss_pred CeEEEEEcCCCCccc----HHHHHHHhh--hcCcEEEEEcCCCcceehHHHHHHHHHHc--CCc-eEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDF----SSEVTAALR--VTDGALVVVDCVSGVCVQTETVLRQAIAE--RIK-PVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df----~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip-~iv~iNKiD~~ 156 (755)
++.+.||||||.... ..++....+ .+|.+++|+|+..+ . ..+++++.+ .++ .-+++||+|..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~---~~~~~~~~~~~~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--Q---EALSVARAFDEKVGVTGLVLTKLDGD 250 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--H---HHHHHHHHHHHHTCCCEEEEECGGGC
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--H---HHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 678999999987543 222222222 47899999998754 1 222333322 244 35789999974
No 240
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.60 E-value=0.00089 Score=71.68 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCC-------c--c--eehHHHHHHHHHH----cCCceEEEEecc
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS-------G--V--CVQTETVLRQAIA----ERIKPVLFMNKM 153 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~-------g--~--~~qt~~~~~~~~~----~~ip~iv~iNKi 153 (755)
+...+.++||+|+..|..-.....+.+|++|+|+|.++ . . .......|..... .++|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 45789999999999999999999999999999999861 1 1 1222334444432 468999999999
Q ss_pred chhh
Q psy16810 154 DRAL 157 (755)
Q Consensus 154 D~~~ 157 (755)
|+..
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9854
No 241
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.32 E-value=0.0027 Score=65.76 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=43.8
Q ss_pred cCCCCc-ccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 97 DSPGHV-DFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 97 DtPGh~-df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
+-|||. .+..++...+..+|+++.|+||..+.......+-+.. .++|+++++||+|+..
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 679996 6788999999999999999999987765533332222 5789999999999853
No 242
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.11 E-value=0.0019 Score=67.68 Aligned_cols=64 Identities=16% Similarity=0.056 Sum_probs=49.8
Q ss_pred EEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-eehH-HHHHHHHHHcCCceEEEEeccchhh
Q psy16810 92 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQT-ETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 92 ~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt-~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.+.++|| +..|..-....++.+|++|+|+|+++.. .... ...+..+...++|+++++||+|+..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 6889999 8888777778899999999999998754 2222 2333445667899999999999853
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.89 E-value=0.023 Score=59.26 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=38.3
Q ss_pred eEEEEEcCCCCcccHHHHHH-------Hhh-----hcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 91 FLINLIDSPGHVDFSSEVTA-------ALR-----VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~-------al~-----~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+...++||.|...+...... ++. ..+-.++|+|+..|..+.+. +.......++ .+++++|+|-.
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~-t~iiiThlD~~ 259 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILTKLDGS 259 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEECCSSC
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCC-CEEEEeCCCCC
Confidence 34578999998654322211 111 24556999998888765543 2222234454 46779999964
No 244
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.80 E-value=0.015 Score=59.21 Aligned_cols=67 Identities=18% Similarity=0.018 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE-EEEeccch
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LFMNKMDR 155 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-v~iNKiD~ 155 (755)
+.|.+.|||||+..........++..+|.+|+|+.+.......+...++.+.+.+++.+ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46889999999976543333334557999999999887766677778888888899987 89999985
No 245
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.50 E-value=0.0033 Score=64.35 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=39.2
Q ss_pred CCCcc-cHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 99 PGHVD-FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 99 PGh~d-f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
|||.. ..+++...+..+|.++.|+||..+.......+- .+ ++|+++++||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCC
Confidence 89964 446899999999999999999987655432211 12 899999999999953
No 246
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.36 E-value=0.052 Score=57.92 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCcccHHHHHH-------Hh-----hhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 91 FLINLIDSPGHVDFSSEVTA-------AL-----RVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 91 ~~i~lIDtPGh~df~~~~~~-------al-----~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+...++||.|...+...... ++ ...+-.++|+|+..|...... +.......++ .+++++|+|-.
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~-t~iiiThlD~~ 316 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILTKLDGS 316 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEESCTTC
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCC-eEEEEecCccc
Confidence 34578999998654322211 11 124566999998888765543 2222233454 46779999864
No 247
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=94.67 E-value=0.031 Score=45.28 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=54.1
Q ss_pred EEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCccee
Q psy16810 642 YLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFP 707 (755)
Q Consensus 642 ~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~ 707 (755)
-+..++++-..+|+|...|.+..+.|.+.+..+ .+.++..+|..+.-.|...|+.+|+|++.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~---~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQA---FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE---EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEcccccC---eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 356789999999999999999999999888643 379999999999999999999999999854
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.50 E-value=0.012 Score=61.55 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=40.0
Q ss_pred cccHHHHHHHhhhcCcEEEEEcCCCcc-eehH-HHHHHHHHHcCCceEEEEeccchh
Q psy16810 102 VDFSSEVTAALRVTDGALVVVDCVSGV-CVQT-ETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 102 ~df~~~~~~al~~~D~ailVvda~~g~-~~qt-~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
..|..-....++.+|++++|+|+++.. .... ...+..+...++|+++++||+|+.
T Consensus 67 er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 67 ERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred ChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 334333335789999999999998754 3332 344556677899999999999985
No 249
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.47 E-value=0.046 Score=55.41 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=52.7
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~ 156 (755)
.|.+.+||||+... ..+..++..+|.+|+|+.+.......+...++.+...+++. -+++|+.|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998765 67788899999999999987766666777777777778765 4889999964
No 250
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.21 E-value=0.032 Score=52.73 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=24.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
.+-..|+++|++||||||++..|....|.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 45578999999999999999998765553
No 251
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.78 E-value=0.069 Score=53.04 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~ 156 (755)
..|.+.+||||+... ..+..++..+|.+|+|+.+.......+...++.+.+.+++. -+++||.|..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 357889999998755 56788999999999999987766666777777787778765 5789999964
No 252
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.69 E-value=0.073 Score=54.52 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=52.2
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE-EEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-v~iNKiD~~ 156 (755)
.|.+.|||||+..... .....++.+|++|+|+.+......+.....+.+...+++++ +++|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5778999999976542 33445578999999999988777777888888888899887 899999974
No 253
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.55 E-value=0.085 Score=51.47 Aligned_cols=77 Identities=8% Similarity=-0.019 Sum_probs=42.6
Q ss_pred EEEEEcCC------CCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH----HHHH-H---cCCceEEEEecc-chh
Q psy16810 92 LINLIDSP------GHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL----RQAI-A---ERIKPVLFMNKM-DRA 156 (755)
Q Consensus 92 ~i~lIDtP------Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~----~~~~-~---~~ip~iv~iNKi-D~~ 156 (755)
++..-.+| |+..+..-.......+|+.|+|||+++.-....+.-+ +.+. . .++|++|+.||. |..
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 44455666 6666777778889999999999999875322233332 2221 1 478999999996 676
Q ss_pred hhcccCCHHHHHHHH
Q psy16810 157 LLELQLDAEDLYQTF 171 (755)
Q Consensus 157 ~~~~~~~~~~~~~~~ 171 (755)
++ ++..++.+.+
T Consensus 177 ~A---ms~~EI~e~L 188 (227)
T 3l82_B 177 KR---MPCFYLAHEL 188 (227)
T ss_dssp CB---CCHHHHHHHT
T ss_pred CC---CCHHHHHHHc
Confidence 53 5666665544
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.55 E-value=0.034 Score=58.06 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++++|++|+|||||+++|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 5789999999999999999943
No 255
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.51 E-value=0.26 Score=53.88 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..++..|+|+|..++|||+|++.|+..
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHH
Confidence 357889999999999999999988654
No 256
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.42 E-value=0.12 Score=52.38 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=47.0
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHH------cCCceE-EEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA------ERIKPV-LFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~------~~ip~i-v~iNKiD~~ 156 (755)
..|.+.+||||+.... .+..++..+|.+|+|+.+...-...+...++.+.. .+++++ +++|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 4688999999997653 45678889999999999876544444444444332 256664 899999863
No 257
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.34 E-value=0.39 Score=45.60 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-.+|+++|.+|+||||++..|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998554
No 258
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.32 E-value=0.047 Score=53.02 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=24.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCCc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGII 35 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~i 35 (755)
+-..|+|+|+.|||||||+..|....|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 34689999999999999999997665543
No 259
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.27 E-value=0.047 Score=60.76 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..+|.++|.+|+||||++.+|....
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999996543
No 260
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.26 E-value=0.046 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.+++|+|+.|+|||||+..|....+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976554
No 261
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.23 E-value=0.046 Score=52.14 Aligned_cols=23 Identities=13% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.++|+|++|||||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999764
No 262
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.21 E-value=0.053 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHH
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.+-..|+++|++|||||||++.|..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 4446899999999999999999954
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.14 E-value=0.043 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-+.++|+|+.|+|||||++.|+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 367999999999999999999754
No 264
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.13 E-value=0.12 Score=53.70 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++++|+.|+|||||+++|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999997
No 265
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.11 E-value=0.043 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.++|+|+.|||||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56899999999999999999754
No 266
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=93.09 E-value=0.26 Score=42.84 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=41.4
Q ss_pred CCeEEEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEE
Q psy16810 289 APLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICG 368 (755)
Q Consensus 289 ~pl~~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIva 368 (755)
-|....|.+++.--+ |. +..|||.+|+|++|+.| +.+ + ... +|.++.. ..+++++|.|||.|+
T Consensus 33 ~P~k~~ilp~~~~vF-gp-vivGrVe~G~LK~G~~V---Pg~-~--~vg-----~VkSIE~----~~e~v~eA~~GdnVa 95 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG-KD-VIIGTVESGMIGVGFKV---KGP-S--GIG-----GIVRIER----NREKVEFAIAGDRIG 95 (116)
T ss_dssp CSEEEEEEEEEEETT-EE-EEEEEEEEEEEETTCEE---ECS-S--CEE-----EEEEEEE----TTEEESEEETTCEEE
T ss_pred CcEEEEEEecCCeEE-CC-eeEEEEeEEEEcCCCCc---CCC-c--eEE-----EEEEEEE----CCcCcCCcCCCCEEE
Confidence 455555555222222 55 78889999999999999 211 0 111 3444432 347899999999998
Q ss_pred ec
Q psy16810 369 LV 370 (755)
Q Consensus 369 i~ 370 (755)
+.
T Consensus 96 i~ 97 (116)
T 1xe1_A 96 IS 97 (116)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 267
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.08 E-value=0.06 Score=53.12 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
||+. ..+|+|+|++||||||++..|....|
T Consensus 1 mm~~---~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 1 MTAI---APVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp --CC---SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCC---CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5653 25799999999999999999866544
No 268
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.90 E-value=0.099 Score=52.68 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=50.9
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC---------CceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---------IKPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~---------ip~iv~iNKiD~~ 156 (755)
.|.+.+||||+... ..+..++..+|.+|+|+++...-...+..+++.+...+ .+.-+++|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 67899999999654 57788999999999999987766666666666665544 4567899999964
No 269
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.69 E-value=0.12 Score=53.44 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=48.0
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHH------cCCceE-EEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA------ERIKPV-LFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~------~~ip~i-v~iNKiD~~ 156 (755)
.|.+.+||||+.... .+..++..+|.+|+|+.+.......+...++.+.. .+++++ +++|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 578999999997653 45668888999999999876655555555555544 267754 889999974
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.66 E-value=0.064 Score=50.16 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.|+|.|.+||||||+++.|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976544
No 271
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.63 E-value=0.15 Score=51.85 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=50.4
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcC--CceEEEEeccchh
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--IKPVLFMNKMDRA 156 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~--ip~iv~iNKiD~~ 156 (755)
..|.+.+||||+..+ ..+..++..+|.+|+|+.+...-...+..+.+.+...+ +++.+++|+.++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 467899999999764 45778889999999999986654455566667776664 5778999999653
No 272
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.56 E-value=0.087 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.+..+|+|.|.+||||||+++.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999988665
No 273
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.55 E-value=0.17 Score=52.55 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE-EEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-v~iNKiD~~ 156 (755)
.|.+.|||||+..... +.......+|++|+|+.+......+....++.+...+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4678999999976543 33445578999999999888877888888888888898875 789999974
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.52 E-value=0.067 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.+|+|+|++|||||||+..|....|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999966544
No 275
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.49 E-value=0.072 Score=52.10 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+-+.|+|+|+.|+|||||++.|+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44689999999999999999997654
No 276
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.38 E-value=0.076 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+++.|+|+|+.|+|||||+.+|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999753
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.32 E-value=0.082 Score=51.55 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.+-..|+|+|+.|||||||++.|...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999664
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.30 E-value=0.073 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..|+|+|+.|||||||+..|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999997653
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.28 E-value=0.082 Score=49.38 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..|+|.|.+||||||+++.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 47999999999999999999 5544
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.22 E-value=0.087 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-..|+|+|+.|||||||+..|...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998653
No 281
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.99 E-value=0.077 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..++|+|+.|||||||++.|....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999996543
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.91 E-value=0.11 Score=49.03 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.|.+.|.+||||||++..|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999976543
No 283
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.90 E-value=0.12 Score=53.97 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=37.5
Q ss_pred HhhhcCcEEEEEcCCCcceehH--HHHHHHHHHcCCceEEEEeccchhh
Q psy16810 111 ALRVTDGALVVVDCVSGVCVQT--ETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 111 al~~~D~ailVvda~~g~~~qt--~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
++..+|.+++|+|+..+..... .+.+..+...++|+++++||+|+..
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE 131 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCc
Confidence 6889999999999997665443 3445556678999999999999863
No 284
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.75 E-value=0.11 Score=51.51 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..+...|+|.|.+||||||++..|....|
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34557899999999999999999976555
No 285
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.73 E-value=0.37 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.048 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++|+|++|+|||||+..|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 286
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.71 E-value=0.15 Score=50.74 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=51.9
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCC---ceEEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI---KPVLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i---p~iv~iNKiD~~ 156 (755)
.|.+.+||||+..+. .+..++..+|.+|+|+.....-...+...++.+...+. ..-+++|+.|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 578899999997643 56778999999999999876666677777888877774 357899999964
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.66 E-value=0.1 Score=50.71 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+-+.|+|+|+.|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998654
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.63 E-value=0.094 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..++++|+.|+|||||+..|....
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999996653
No 289
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.54 E-value=0.26 Score=50.85 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccchh
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~~ 156 (755)
.|.+.+||||+..... ......+.+|++|+|+.+...........++.+.+.+.++ -+|+||+|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 4678999999976543 3455667899999999988777777888888888899876 5789999974
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.50 E-value=0.1 Score=50.60 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
.+.|+|+|.+||||||++..|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999766553
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.48 E-value=0.11 Score=50.14 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.++|+|+|.+|+||||++..|....|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999976554
No 292
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.46 E-value=0.095 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..++|+|+.|+|||||++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 568999999999999999997643
No 293
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.43 E-value=0.1 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
-+.++|+|+.|||||||++.|+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999997653
No 294
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.43 E-value=0.11 Score=49.28 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.++|+++|.+|+||||++..|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999976554
No 295
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.41 E-value=0.088 Score=56.54 Aligned_cols=63 Identities=17% Similarity=-0.024 Sum_probs=40.1
Q ss_pred EEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 92 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 92 ~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
.+.-+|+| +.+|........+.+|.+++|+|+.+.....-..+.+.+ .+.|+++|+||+|+..
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLP 112 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSC
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCC
Confidence 34455665 678888888888999999999999985533222222221 2789999999999964
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.41 E-value=0.091 Score=49.62 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.1
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~L 28 (755)
.-++++|+.|||||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999985
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.35 E-value=0.1 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998653
No 298
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.30 E-value=0.11 Score=50.23 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-..|+|+|++|||||||++.|...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998654
No 299
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.25 E-value=0.35 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+.|.++|.+||||||++.+|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999543
No 300
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.22 E-value=0.13 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.++.++|+|+.|+|||||+++|+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999764
No 301
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=91.18 E-value=0.28 Score=50.28 Aligned_cols=70 Identities=7% Similarity=0.021 Sum_probs=47.5
Q ss_pred CCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHH----HHH---H-HcCCceEEEEec-cchhhhcccCCHHHHHH
Q psy16810 99 PGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL----RQA---I-AERIKPVLFMNK-MDRALLELQLDAEDLYQ 169 (755)
Q Consensus 99 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~----~~~---~-~~~ip~iv~iNK-iD~~~~~~~~~~~~~~~ 169 (755)
.|+..+..-.......+|++|+|||+++---...+.-+ ..+ . ..++|++|+.|| -|..++ ++..++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHHHH
Confidence 47788888899999999999999999875422232221 222 2 258899999997 577653 56666654
Q ss_pred HH
Q psy16810 170 TF 171 (755)
Q Consensus 170 ~~ 171 (755)
.+
T Consensus 272 ~L 273 (312)
T 3l2o_B 272 EL 273 (312)
T ss_dssp HT
T ss_pred Hc
Confidence 44
No 302
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.16 E-value=0.13 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++++|+.|||||||+..|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999964
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.89 E-value=0.14 Score=51.43 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=23.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCCc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGII 35 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~i 35 (755)
...|+|+|+.|||||||+..|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3589999999999999999997555643
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.89 E-value=0.17 Score=48.82 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=24.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
.+.+.|+|.|.+||||||++..|....|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 45678999999999999999999766553
No 305
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.83 E-value=0.19 Score=47.79 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.+.|++.|.+||||||++..|....|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976545
No 306
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.79 E-value=0.12 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
+.|.|.|.+||||||++..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999965
No 307
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.78 E-value=0.13 Score=50.03 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.+|+|+|+.||||||++..|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.74 E-value=0.12 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+-+.|+++|++|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789999999999999999997654
No 309
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.70 E-value=0.18 Score=48.96 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.....|+|+|.+|+|||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998653
No 310
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.68 E-value=0.079 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..|+|+|..|+|||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999653
No 311
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.50 E-value=0.14 Score=49.65 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.+|+|+|..||||||+++.|.. .|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 4799999999999999999866 44
No 312
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.48 E-value=0.12 Score=48.88 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-++++++|++|+|||||+.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998653
No 313
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.43 E-value=0.15 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
..|+|+|+.|||||||++.|....|.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhch
Confidence 56999999999999999999765554
No 314
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.40 E-value=0.12 Score=51.63 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~L 28 (755)
..++|+|+.|||||||+..|
T Consensus 32 e~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 35799999999999999988
No 315
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.35 E-value=0.13 Score=50.95 Aligned_cols=19 Identities=42% Similarity=0.405 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|||||||++.|
T Consensus 32 ~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999988
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.32 E-value=0.16 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
+|+|.|..||||||++..|....+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999765553
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.29 E-value=0.18 Score=47.72 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.++|.|.|.+|+||||++..|....|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999966544
No 318
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.28 E-value=0.15 Score=48.01 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
++|+|+|.+||||||++..|....|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999966544
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.21 E-value=0.18 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-..|+|.|.+||||||+++.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999654
No 320
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.18 E-value=0.16 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+.|+|.|.+|+||||+++.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999996543
No 321
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.15 E-value=0.19 Score=48.64 Aligned_cols=25 Identities=16% Similarity=-0.005 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..|+|.|.+||||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999966544
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.13 E-value=0.18 Score=47.77 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
-.+|+++|.+||||||++..|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999976544
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.12 E-value=0.19 Score=49.20 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
+|+|.|.+||||||++..|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999765553
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.05 E-value=0.17 Score=49.33 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
+|+|.|.+||||||++..|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999765553
No 325
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.85 E-value=0.16 Score=49.81 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.++|+|+.|+|||||+..|...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998653
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.79 E-value=0.22 Score=47.64 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.+.|+|.|.+||||||++..|....|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999976545
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.78 E-value=0.2 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.|++.|.+||||||++..|....|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999976555
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.78 E-value=0.21 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.124 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.+-..|+|+|+.|||||||++.|...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44568999999999999999998553
No 329
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.77 E-value=0.18 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..++|+|+.|||||||+..|+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 57999999999999999998653
No 330
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.68 E-value=0.23 Score=47.37 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
-..|.+.|.+||||||++..|....|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999966544
No 331
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.68 E-value=0.18 Score=50.50 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|||||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999984
No 332
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.67 E-value=0.2 Score=46.79 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
...||+|.|.+||||||+...|-...|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999998866545
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.65 E-value=0.23 Score=47.27 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-.+|+++|.+|+||||++..|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998665
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.59 E-value=0.27 Score=48.49 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=25.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcCCc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGII 35 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g~i 35 (755)
.+.+.|.|+|++||||+|.+..|...-|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 456889999999999999999998776643
No 335
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.56 E-value=0.18 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-..|+|+|..|+|||||+..|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998554
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.49 E-value=0.2 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
.+...|+|+|++|||||||+..|....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999986543
No 337
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.44 E-value=0.19 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.++|+|+.|+|||||+..|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998664
No 338
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.41 E-value=0.18 Score=46.48 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-.+++++|++|+|||||+..+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999653
No 339
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.26 E-value=0.19 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..++|+|+.|+|||||+..|+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 57999999999999999999654
No 340
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.26 E-value=0.13 Score=50.91 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=15.6
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..|+|+|+.|||||||++.|.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999996
No 341
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.25 E-value=0.19 Score=47.75 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.|+|.|.+||||||++..|....+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999965433
No 342
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.24 E-value=0.17 Score=51.60 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=18.2
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll 29 (755)
.++|+|+.|||||||++.|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57999999999999999983
No 343
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.22 E-value=0.17 Score=50.60 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|+|||||++.|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.20 E-value=0.23 Score=48.74 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+..+|+++|.+||||||++..|....|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999976555
No 345
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.18 E-value=0.19 Score=50.06 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=18.0
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|+|||||++.|
T Consensus 36 ~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 346
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.13 E-value=0.17 Score=51.43 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|||||||++.|
T Consensus 34 ~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 347
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.13 E-value=0.2 Score=50.59 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.++|+|+.|+|||||++.|..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999854
No 348
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.12 E-value=0.17 Score=51.82 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=17.8
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|||||||+..|
T Consensus 36 ~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 349
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.06 E-value=0.18 Score=49.60 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|+|||||++.|
T Consensus 37 ~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.06 E-value=0.24 Score=47.50 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.+.|+|.|.+||||||++..|....|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999976555
No 351
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.05 E-value=0.19 Score=50.94 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~L 28 (755)
-.++|+|+.|||||||++.|
T Consensus 34 e~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.03 E-value=0.26 Score=50.87 Aligned_cols=26 Identities=15% Similarity=-0.011 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.+...|+|+|++|||||||+..|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988553
No 353
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.97 E-value=0.19 Score=50.40 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|||||||++.|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 367999999999999999983
No 354
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.96 E-value=0.18 Score=50.48 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|+|||||++.|
T Consensus 34 ~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 355
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.96 E-value=0.22 Score=52.12 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
++..++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 6889999999999999999999864
No 356
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.91 E-value=0.24 Score=49.89 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
-.+|+|+|+.|||||||+..|....|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 358999999999999999999755453
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.86 E-value=0.29 Score=47.21 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.-.+|+|.|.+|+||||++..|....|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999976544
No 358
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.81 E-value=0.25 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..+|+|+.|+|||||+++|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999977544
No 359
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.79 E-value=0.21 Score=49.70 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|||||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 478999999999999999886
No 360
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.78 E-value=0.22 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
++|+|+|.+||||||++..|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999966545
No 361
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.76 E-value=0.21 Score=50.36 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|||||||++.|
T Consensus 37 ~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 362
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.74 E-value=0.27 Score=49.48 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
+...|+|.|.+||||||++..|....|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3568999999999999999998765553
No 363
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.70 E-value=0.38 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.+.|.|++|+|||||+.++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45689999999999999999764
No 364
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.69 E-value=0.26 Score=49.70 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.|+|+|++|||||||+..|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999976554
No 365
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=88.69 E-value=0.15 Score=54.60 Aligned_cols=60 Identities=17% Similarity=0.000 Sum_probs=38.4
Q ss_pred EEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchhh
Q psy16810 95 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL 157 (755)
Q Consensus 95 lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~~ 157 (755)
-++++ ..+|........+.+|++++|+|+.+.....-..+.+. ..++|+++|+||+|+..
T Consensus 51 ~v~~~-~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 51 DVSLT-DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLIP 110 (368)
T ss_dssp ------CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGSC
T ss_pred cCCCC-HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcCC
Confidence 34443 46788888888889999999999987421111111111 13789999999999964
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.67 E-value=0.3 Score=47.23 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHH
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~ 30 (755)
+-..|+|+|..|+|||||+..|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998865
No 367
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.55 E-value=0.22 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|||||||++.|.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 357999999999999999983
No 368
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.52 E-value=0.22 Score=50.73 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~L 28 (755)
..++|+|+.|||||||++.|
T Consensus 51 ei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHH
Confidence 35799999999999999998
No 369
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.52 E-value=0.24 Score=48.62 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++|+|+.|+|||||+..|+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.48 E-value=0.24 Score=46.27 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
++|+|.|.+||||||++..|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999966545
No 371
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.45 E-value=0.7 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.+.|.|++|+|||||+.+++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999764
No 372
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.45 E-value=0.3 Score=48.88 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=23.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcCC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAGI 34 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g~ 34 (755)
+..+|+|.|.+||||||++..|....|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999765553
No 373
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.38 E-value=0.81 Score=45.55 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred cEEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEe
Q psy16810 640 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQC 709 (755)
Q Consensus 640 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~ 709 (755)
--|++.|++|.++.+++++.|.. -|.|..++..++. .+...+.+|-----.+...|++.|+|+|...+
T Consensus 183 a~m~l~v~ip~~~~~~~~~~l~~-~~~v~~ee~~~dg-s~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~v 250 (252)
T 2wbm_A 183 EKVRVAIKIPGEMAGSAYGVISN-FGKITNEEWQNDG-SWIAVVEIPGGLQDSFYQKLSELTGGNVETRL 250 (252)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHH-HCEEEEEEECTTS-CEEEEEEEEGGGHHHHHHHHHHHTTTCCEEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCCC-cEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 45889999999999999999954 4888777654322 36778899988777888999999999997653
No 374
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.32 E-value=1.1 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.++.+.|++|+|||||+.+|...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 48999999999999999998654
No 375
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.32 E-value=0.21 Score=50.33 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=18.0
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|+|||||++.|
T Consensus 28 ~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5799999999999999998
No 376
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.30 E-value=0.23 Score=50.34 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~L 28 (755)
-.++|+|+.|||||||++.|
T Consensus 42 ei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 377
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.30 E-value=0.23 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++++|+.|+|||||++.|+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999999964
No 378
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.30 E-value=0.22 Score=50.74 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.++|+|+.|+|||||++.|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999843
No 379
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.30 E-value=0.28 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+|+|.|.+||||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999966544
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.22 E-value=0.28 Score=48.21 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+..+|+|+|.+||||||++..|....|
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999976655
No 381
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.21 E-value=0.81 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-+.+.|.|.+|+|||||+-+|+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999998764
No 382
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.18 E-value=0.32 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-..|+|+|+.|||||||+..|...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998664
No 383
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.15 E-value=0.3 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+|+|.|.+||||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976555
No 384
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.11 E-value=0.46 Score=50.89 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCC
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 126 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~ 126 (755)
..+.+.+||||.. ....+..++..+|.+++|+.+..
T Consensus 258 ~~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecCCc
Confidence 3688999999954 44578889999999999997755
No 385
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.07 E-value=0.25 Score=46.68 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=18.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
...|.|.|.+||||||++..|....|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999965544
No 386
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.02 E-value=0.29 Score=47.85 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcCCc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAGII 35 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g~i 35 (755)
+|.|+|++||||+|.+..|...-|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 58899999999999999998776654
No 387
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.99 E-value=0.24 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.+++|+|+.|||||||++.|+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999954
No 388
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.97 E-value=0.25 Score=50.39 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|||||||++.|
T Consensus 35 ~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5799999999999999998
No 389
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.97 E-value=0.29 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-..|+|.|.+||||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.96 E-value=0.25 Score=47.51 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
-+.|+|.|..||||||+++.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999996543
No 391
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=87.95 E-value=1.5 Score=46.05 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCcceehHHHHHHHHHHcCCce-EEEEeccch
Q psy16810 116 DGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLFMNKMDR 155 (755)
Q Consensus 116 D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-iv~iNKiD~ 155 (755)
+++++|.-+..-....+++.+..+.+.|+|+ -+|+|++.-
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 3678888776666677888899999999988 578999863
No 392
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=87.94 E-value=0.13 Score=52.98 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=44.6
Q ss_pred CeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcceehH----HH-------------HH--HHHHHc----C-Cc
Q psy16810 90 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT----ET-------------VL--RQAIAE----R-IK 145 (755)
Q Consensus 90 ~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt----~~-------------~~--~~~~~~----~-ip 145 (755)
.|.+.|||||+.. ...+..++..+|.+|+|+.+...-...+ .. +| +.++.+ + ++
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 5778999999975 4678889999999999998764221111 11 22 333322 4 67
Q ss_pred eEEEEeccchh
Q psy16810 146 PVLFMNKMDRA 156 (755)
Q Consensus 146 ~iv~iNKiD~~ 156 (755)
..+++|+.|..
T Consensus 181 ~~vV~N~~~~~ 191 (286)
T 2xj4_A 181 WVVLRNRLATT 191 (286)
T ss_dssp EEEEEECCTTC
T ss_pred EEEEEeeecCC
Confidence 78999999964
No 393
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.85 E-value=0.25 Score=50.46 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|+|||||++.|
T Consensus 47 ~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 394
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.77 E-value=0.24 Score=50.11 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|||||||++.|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 395
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.75 E-value=0.26 Score=50.65 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~L 28 (755)
.++|+|+.|+|||||++.|
T Consensus 49 ~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5799999999999999988
No 396
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.73 E-value=0.28 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998653
No 397
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.69 E-value=0.29 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-+|+|+|+.|||||||+.+|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999653
No 398
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.60 E-value=0.3 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
-.+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999997643
No 399
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.58 E-value=0.38 Score=46.34 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
...+|++.|.+||||||+++.|....|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 468999999999999999998866535
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.40 E-value=0.17 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.|+|.|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 401
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.36 E-value=0.22 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.+++|+|+.|||||||++.|+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999854
No 402
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.29 E-value=0.37 Score=47.77 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=23.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+..+|+++|.+|+||||++..|....|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999976555
No 403
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.20 E-value=0.46 Score=54.30 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcCCccccccCcccccCCc---hhhhhhccccccceEEE-----------
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTR---KDEQERCITIKSTAISM----------- 66 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~---~~E~~rgiTi~~~~~~~----------- 66 (755)
|--.....|.+.+.|..|+||||++-+|...... ...++-+.|.. .....-|.........+
T Consensus 1 ~~~~~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~----~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~ 76 (589)
T 1ihu_A 1 MQFLQNIPPYLFFTGKGGVGKTSISCATAIRLAE----QGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEI 76 (589)
T ss_dssp CGGGSSCCSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEEC
T ss_pred CCCCCCCCEEEEEeCCCcCHHHHHHHHHHHHHHH----CCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhhccC
Q ss_pred ------------------------------------------------------EeeeCccccccccCCCccccCCCCeE
Q psy16810 67 ------------------------------------------------------YFELDDKDMVFITNPDQTAKNEKGFL 92 (755)
Q Consensus 67 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (755)
.+. ..|.
T Consensus 77 d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~-------------------~~yD 137 (589)
T 1ihu_A 77 DPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL-------------------TRFD 137 (589)
T ss_dssp CHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH-------------------HHCS
T ss_pred CHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc-------------------ccCC
Q ss_pred EEEEcCC--CCc----------------------------------ccHHHHHHHhhh--cCcEEEEEcCCCcceehHHH
Q psy16810 93 INLIDSP--GHV----------------------------------DFSSEVTAALRV--TDGALVVVDCVSGVCVQTET 134 (755)
Q Consensus 93 i~lIDtP--Gh~----------------------------------df~~~~~~al~~--~D~ailVvda~~g~~~qt~~ 134 (755)
+.+|||| ||. +...++...+.. .+.+++|+.+.......+..
T Consensus 138 ~VIiDt~P~~~~lrll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~ 217 (589)
T 1ihu_A 138 HIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVAR 217 (589)
T ss_dssp EEEESSCCCHHHHHHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHH
T ss_pred EEEECCCCchhHHHHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHH
Q ss_pred HHHHHHHcCCce-EEEEeccc
Q psy16810 135 VLRQAIAERIKP-VLFMNKMD 154 (755)
Q Consensus 135 ~~~~~~~~~ip~-iv~iNKiD 154 (755)
.++.+.+.+++. -+++|+++
T Consensus 218 ~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 218 THLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp HHHHHHHHTCCCEEEEEEEEC
T ss_pred HHHHHHhCCCCCCEEEEcCCc
No 404
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.18 E-value=0.87 Score=44.45 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCCcc--cH---HHHHHHhhhcCcEEEEEcCCCcceehHHHHHHHHHHcCCceE-EEEeccchh
Q psy16810 90 GFLINLIDSPGHVD--FS---SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LFMNKMDRA 156 (755)
Q Consensus 90 ~~~i~lIDtPGh~d--f~---~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-v~iNKiD~~ 156 (755)
.|.+.+|||||... .. ....-+....+.+|+|+++..+...++...++.++..+++++ +++|+.|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 67899999998753 11 111111112235888888766555666666777777788865 789999863
No 405
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.14 E-value=0.36 Score=48.10 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
...|+|.|++|+||||++..|....|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999976555
No 406
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.07 E-value=0.35 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.++++|++|+|||||+.+|....+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5699999999999999999977654
No 407
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.01 E-value=0.89 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.+.|.|++|+|||||+-.++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998754
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.90 E-value=0.33 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.+|+|+|..|+||||+...|....|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999966554
No 409
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.84 E-value=0.34 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-.+|+|+|+.|||||||+..|+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999753
No 410
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.76 E-value=0.35 Score=45.62 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-..|++.|..||||||++..|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988553
No 411
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.73 E-value=0.27 Score=55.00 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.+|+|+|+.|||||||+.+|+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999954
No 412
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.65 E-value=0.48 Score=53.21 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=26.2
Q ss_pred cCcEEEEEcCCCcceehHHHHHHHHHHcCCceEEE
Q psy16810 115 TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLF 149 (755)
Q Consensus 115 ~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~ 149 (755)
..+-++|+|++.+...+-......+.+.+.+++++
T Consensus 117 ~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l 151 (520)
T 2axn_A 117 EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFI 151 (520)
T ss_dssp SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 35678899999887777667777778888866554
No 413
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.64 E-value=0.34 Score=50.02 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.4
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSL 28 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~L 28 (755)
..++|+|+.|+|||||++.|
T Consensus 65 e~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36799999999999999998
No 414
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=86.63 E-value=1 Score=44.52 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=53.6
Q ss_pred EEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEe
Q psy16810 641 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQC 709 (755)
Q Consensus 641 i~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~ 709 (755)
-|++.|++|.++.|++++.|. .-|.|..++..+.. .+...+.+|-----.+...|++.|+|+|...+
T Consensus 169 ~m~~~v~vp~~~~~~~~~~l~-~~~~v~~ee~~~dg-s~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 169 EMEIAIKIPPEHTGRAISALY-NFGGVTREEWQRDG-SWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp EEEEEEEECGGGHHHHHHHHH-HHCCEEEEEECTTS-CEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEEcHHHHHHHHHHHH-hhCeeeeecccCCC-cEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 588899999999999999995 45788777754322 36778899988767788899999999997654
No 415
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.63 E-value=0.38 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhc
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
-|++.|..||||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999996543
No 416
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.61 E-value=1.2 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.-+.|.|.+|+|||||+-.+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999888654
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.58 E-value=0.39 Score=46.93 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..|+|.|..||||||+++.|-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998854
No 418
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.51 E-value=0.41 Score=49.11 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+...|+|.|.+||||||+++.|. ..|
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCC
Confidence 45789999999999999999886 344
No 419
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.47 E-value=0.34 Score=49.28 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=18.3
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll 29 (755)
.++|+|+.|+|||||++.|.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999983
No 420
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.43 E-value=0.4 Score=48.08 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+.+.++|++|+|||||+.++....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999996643
No 421
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.42 E-value=0.44 Score=48.19 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+...|++.|.+||||||++..|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999654
No 422
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.41 E-value=0.45 Score=48.96 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+-..|.++|++||||||++..|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999997654
No 423
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.41 E-value=1.2 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++|+|++|+|||||+..|+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 4789999999999999997753
No 424
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.41 E-value=0.33 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|||||||+..|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 357999999999999999884
No 425
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.32 E-value=0.37 Score=48.55 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
....|.++|++||||||++..|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999976543
No 426
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.02 E-value=2.9 Score=46.68 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..+.+.|.|++|+|||||+.++....|
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 357999999999999999999977654
No 427
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.99 E-value=0.37 Score=51.22 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.++|+|+.|||||||++.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 579999999999999999843
No 428
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.89 E-value=0.35 Score=47.92 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-..|+|.|..|||||||++.|...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999988544
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.86 E-value=0.44 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+|+|.|.+||||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976545
No 430
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.82 E-value=0.44 Score=46.63 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..+|+++|.+||||||++..|....|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999976555
No 431
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.69 E-value=0.48 Score=44.45 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+++.+.|++|+|||||+.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999654
No 432
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.55 E-value=2.2 Score=55.00 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+-+||.+.|++|+|||||+-++...+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999997653
No 433
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.48 E-value=0.44 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-.|+|+|+.|||||||+.+|+..
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999764
No 434
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.30 E-value=0.61 Score=48.36 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 5 ~~~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
....+-|+|+|++++|||||+..|....+
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 33446789999999999999999976654
No 435
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.23 E-value=0.27 Score=51.13 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|||||||+..|+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHH
Confidence 467999999999999999884
No 436
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.21 E-value=0.41 Score=50.87 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=18.3
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll 29 (755)
.++|+|+.|+|||||++.|.
T Consensus 43 ~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57999999999999999984
No 437
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.14 E-value=0.41 Score=50.94 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=18.3
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll 29 (755)
.++|+|+.|+|||||++.|.
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 57999999999999999984
No 438
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=85.01 E-value=0.34 Score=48.33 Aligned_cols=66 Identities=8% Similarity=-0.092 Sum_probs=56.2
Q ss_pred EEEEEEEeeccchhhHHHHhhcccceeeeeeecCCCccEEEEEEecchhhcCchHHHhhhcCCcceeEe
Q psy16810 641 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQC 709 (755)
Q Consensus 641 i~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~g~~~~ 709 (755)
-|++.|++|.++.|.+++.|.+-.|.|.+++-.++ +.+.+.+|-----.+...|++.|+|+|...+
T Consensus 173 ~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~~---~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 173 HMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQ---LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp CCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSSB---CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccCC---eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 57889999999999999999988899887775433 5788899998888889999999999998654
No 439
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.98 E-value=0.52 Score=48.04 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
+.++|+|++|+|||||+.+|....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 569999999999999999996643
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.91 E-value=0.52 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.|+|.|..||||||++..|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999966555
No 441
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=84.89 E-value=0.44 Score=49.42 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++++|+.|+|||||++.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 4689999999999999999943
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.77 E-value=0.6 Score=46.33 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.+-.+|+|+|..|+||||++..|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999876555
No 443
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.74 E-value=0.41 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-..++|+|+.|+|||||++.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999654
No 444
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.71 E-value=0.44 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 357999999999999999984
No 445
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.66 E-value=2.2 Score=44.13 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.++|.|.|++|+|||||+.++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999553
No 446
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.59 E-value=4 Score=42.39 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=18.3
Q ss_pred EEEEeCCCCChHHHHHHHHHh
Q psy16810 11 MSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 11 i~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-|.|++++|||||+-.++..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998887654
No 447
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.56 E-value=0.56 Score=45.05 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+++.|.|++|+|||||+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999998654
No 448
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.50 E-value=0.46 Score=50.90 Aligned_cols=20 Identities=20% Similarity=0.229 Sum_probs=18.3
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll 29 (755)
.++|+|+.|+|||||++.|.
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHH
Confidence 57999999999999999984
No 449
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.47 E-value=0.56 Score=45.87 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++|+|++|+|||||+..|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 450
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.46 E-value=0.62 Score=49.06 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+.|+|+|++|||||||+..|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 6899999999999999999977654
No 451
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.42 E-value=0.46 Score=50.91 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.3
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll 29 (755)
.++|+|+.|||||||++.|.
T Consensus 31 ~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 57999999999999999984
No 452
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.42 E-value=0.46 Score=50.83 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|||||||++.|.
T Consensus 38 e~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHH
Confidence 357999999999999999984
No 453
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.40 E-value=0.69 Score=45.68 Aligned_cols=41 Identities=7% Similarity=-0.094 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCcceehHHHHHHHHHHcCCceEEEEeccchh
Q psy16810 116 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156 (755)
Q Consensus 116 D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iv~iNKiD~~ 156 (755)
+.-+++||-..-......+.++.+...++|+|++--..|-.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 46688899665443333334444445689988888777754
No 454
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.40 E-value=0.52 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~ 30 (755)
-..|+++|..|+||||++..|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999854
No 455
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.25 E-value=0.54 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..+++++|++|+|||||+..+....+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46799999999999999999977654
No 456
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=84.22 E-value=1.8 Score=45.23 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+.|.|++|+|||||+..|...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHH
Confidence 57899999999999999999765
No 457
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.20 E-value=3.3 Score=43.15 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
...++|.|.|++|+|||+|+.++...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34578999999999999999999543
No 458
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.18 E-value=0.58 Score=46.99 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
.++|.+.|++|+|||||+.+|....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996543
No 459
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.15 E-value=0.5 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-++|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999754
No 460
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.86 E-value=1.9 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+.+.|.|++++|||||+-.++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 57889999999999999998764
No 461
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.80 E-value=1.8 Score=47.46 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.-+.|.|.+|+|||||+-.+...
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHH
Confidence 46889999999999999888664
No 462
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.58 E-value=0.38 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=18.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+...|+|.|.+||||||+++.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999653
No 463
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.45 E-value=2.8 Score=44.14 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-..+.|.|++|+|||||+..|...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999999765
No 464
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.27 E-value=0.64 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.-+.++|+|++|+|||||+..|...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999754
No 465
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=83.23 E-value=0.59 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..++|+|+.|+|||||++.|+..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999999654
No 466
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=83.11 E-value=0.59 Score=50.33 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~ 30 (755)
.++|+|+.|+|||||+..|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 579999999999999998843
No 467
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=83.05 E-value=0.98 Score=48.81 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=43.3
Q ss_pred CCeEEEEEcCCCCcccHHHHHHHhhhcCcEEEEEcCCCcc-------eehHHHHHHHHHHcCCc-----eEEEEeccch
Q psy16810 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-------CVQTETVLRQAIAERIK-----PVLFMNKMDR 155 (755)
Q Consensus 89 ~~~~i~lIDtPGh~df~~~~~~al~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~~ip-----~iv~iNKiD~ 155 (755)
+.|.+.|||||+... ..+..++..+|.+|+|+.+..-- ......+++.+...+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 367899999999775 56788999999999999764321 12233455556666553 2558999984
No 468
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.85 E-value=0.7 Score=45.30 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+++.|.|++|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998654
No 469
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=82.79 E-value=0.4 Score=50.83 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
-.++|+|+.|+|||||++.|.
T Consensus 27 e~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 357999999999999999984
No 470
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.57 E-value=0.57 Score=43.78 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..+++.|.|++|+|||||+.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998654
No 471
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.31 E-value=0.83 Score=51.01 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
.-+.|.|.+|+|||||+-.++...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHH
Confidence 467899999999999999887653
No 472
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.23 E-value=0.85 Score=47.66 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
++|+|+|++|+|||||+..|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999977654
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.99 E-value=0.7 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
+.|.|+|.+||||||++..|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999965
No 474
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=81.89 E-value=1 Score=44.61 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=22.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
+-..|+|.|..|+||||+++.|....+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 446899999999999999999976543
No 475
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=81.80 E-value=0.78 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..++|+|++|+|||||+..|...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999988653
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.45 E-value=0.79 Score=44.43 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.-.+|+|+.|+||||++++|.+..+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999976544
No 477
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=81.26 E-value=0.4 Score=50.96 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLV 29 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll 29 (755)
..++|+|+.|+|||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 357999999999999999984
No 478
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.15 E-value=0.86 Score=44.96 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..++|+|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999653
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.96 E-value=0.87 Score=48.13 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
.++++|+++|..|+||||+...|....+
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3567999999999999999998865433
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=80.87 E-value=0.83 Score=50.52 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
..++|+|+.|+|||||+..|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 57899999999999999998653
No 481
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.43 E-value=1.3 Score=45.59 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..+.+.+.|++|+|||+|+.++....|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457888899999999999999977654
No 482
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=80.28 E-value=0.85 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
-.+|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999998653
No 483
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=80.27 E-value=0.98 Score=46.02 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++|+|+.|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999865
No 484
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=79.98 E-value=0.93 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHh
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
.++|+|+.|+|||||+..|...
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999664
No 485
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.94 E-value=1 Score=46.51 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..++|.+.|++|+|||||+.++....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35789999999999999999997654
No 486
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.84 E-value=1 Score=45.06 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..++|.+.|++|+|||||+.++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999996543
No 487
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.64 E-value=1.2 Score=45.30 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..+++.|.|++|+|||||+.++....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999999996643
No 488
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.59 E-value=0.84 Score=44.36 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+++.+.|++|+||||++.+|...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999664
No 489
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.46 E-value=1.1 Score=45.94 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..+++.+.|++|+|||||+.++....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35799999999999999999996543
No 490
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=79.12 E-value=0.67 Score=46.82 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHH
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~ 30 (755)
+...|+|.|..|+||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998844
No 491
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=78.90 E-value=3.2 Score=34.96 Aligned_cols=71 Identities=28% Similarity=0.440 Sum_probs=50.8
Q ss_pred EEEEeeeccCCCCceeEEEEEEEeEecCCCeEEEccCCCCCCCcccccccccceEEEeccCceeeeccccCCCeEEec--
Q psy16810 293 MYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLV-- 370 (755)
Q Consensus 293 ~~V~K~~~~~~~G~~l~~~RV~sGtL~~g~~v~i~~~n~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~a~AGdIvai~-- 370 (755)
|-|-.+|..+..|. +|-++|.+|.++.+..++++.. + .-++.-++.+|. +...+|+++.+|.=|+|.
T Consensus 9 AeVr~vF~isk~g~-IAGc~V~~G~i~r~~~vRv~Rd----~--~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~l~ 77 (99)
T 1d1n_A 9 AEVRQTFKVSKVGT-IAGCYVTDGKITRDSKVRLIRQ----G--IVVYEGEIDSLK----RYKDDVREVAQGYECGLTIK 77 (99)
T ss_dssp EEECCCCCCSSSCC-CEEEEECSSBCCSSSEEEEECS----S--SEEEEEECSEEE----CSSSCCSCCBTTCEEEEECT
T ss_pred EEEEEEEEcCCceE-EEEEEEEcCEEEcCCeEEEEEC----C--EEEEEeEEhhhc----ccccccceECCCcEEEEEEc
Confidence 44555666677787 9999999999999999998753 2 113333455554 445789999999999884
Q ss_pred cccc
Q psy16810 371 GVDQ 374 (755)
Q Consensus 371 gl~~ 374 (755)
+.++
T Consensus 78 ~~~d 81 (99)
T 1d1n_A 78 NFND 81 (99)
T ss_dssp TCSS
T ss_pred CcCC
Confidence 4444
No 492
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=78.84 E-value=1.5 Score=45.05 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
....++.+.|++|+|||+|+.++....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999885543
No 493
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=78.82 E-value=1.2 Score=41.95 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-|.|.|++|+|||||+-.|+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999763
No 494
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.63 E-value=1.2 Score=42.97 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHh
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
+-|+|+|++|+|||||+-.|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999654
No 495
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=78.59 E-value=4.4 Score=44.28 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhc
Q psy16810 7 NIRNMSVIAHVDHGKSTLTDSLVSKA 32 (755)
Q Consensus 7 ~irni~iiGh~~~GKTTL~~~Ll~~~ 32 (755)
..++|.+.|++|+|||+|+.++....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999996643
No 496
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.41 E-value=1 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 10 NMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 10 ni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
..+|+|+.|+|||||+++|.+..|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 568999999999999999987654
No 497
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=78.16 E-value=1.6 Score=42.79 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCCCCCCeeEEEEEeCCCCChHHHHHHHHHhcC
Q psy16810 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAG 33 (755)
Q Consensus 1 ~~~~~~~irni~iiGh~~~GKTTL~~~Ll~~~g 33 (755)
||+ +-..|++.|..|+||||+++.|....+
T Consensus 1 ~m~---~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 1 MMG---RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCC---CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCC---CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 564 346899999999999999999976544
No 498
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.09 E-value=1.7 Score=43.95 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHh
Q psy16810 6 KNIRNMSVIAHVDHGKSTLTDSLVSK 31 (755)
Q Consensus 6 ~~irni~iiGh~~~GKTTL~~~Ll~~ 31 (755)
...+++.+.|++|+|||+|+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45689999999999999999999654
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=78.00 E-value=1.1 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q psy16810 9 RNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 9 rni~iiGh~~~GKTTL~~~Ll~ 30 (755)
..++|+|+.|+|||||+..|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999843
No 500
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=77.98 E-value=1.1 Score=40.75 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=20.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q psy16810 8 IRNMSVIAHVDHGKSTLTDSLVS 30 (755)
Q Consensus 8 irni~iiGh~~~GKTTL~~~Ll~ 30 (755)
-.+|.|.|.+|+|||+++.++-.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998844
Done!