RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16810
(755 letters)
>d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 206 bits (526), Expect = 2e-63
Identities = 108/164 (65%), Positives = 126/164 (76%)
Query: 474 VSYRETVSEESDQVCLSKSPNKHNRLFMKAAPLPDGLPEDIDKGEVNPRDDFKIRGRYLA 533
V+YRETV ES Q LSKSPNKHNR+++KA P+ + + I+ G +NPRDDFK R R +A
Sbjct: 1 VAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMA 60
Query: 534 DKYEFDVTEARKIWSFGPDGTGPNLLIDCTKGVQYLNEIKDSVVAGFQWAAKEGVLSEEN 593
D Y +DVT+ARKIW FGPDG GPNL+ID TK VQYL+EIKDSVVA FQWA KEG + E
Sbjct: 61 DDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEE 120
Query: 594 LRGVRFNIHDVTLHADAIHRGGGQIIPTTRRVLYASLLTACPRL 637
+R VR NI DVTLHADAIHRGGGQIIPT RR YA L A P++
Sbjct: 121 MRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 164
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 193 bits (492), Expect = 3e-56
Identities = 159/332 (47%), Positives = 200/332 (60%), Gaps = 40/332 (12%)
Query: 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIK 60
+MDK N+RNMSVIAHVDHGKSTLTDSLV +AGII+ AKAGE RFTDTRKDEQER ITIK
Sbjct: 10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIK 69
Query: 61 STAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALV 120
STAIS+Y E+ D+D+ I + FLINLIDSPGHVDFSSEVTAALRVTDGALV
Sbjct: 70 STAISLYSEMSDEDVKEIKQ----KTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALV 125
Query: 121 VVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDLYQTFQRIVENVNV 180
VVD + GVCVQTETVLRQA+ ERIKPV+ +NK+DRALLELQ+ EDLYQTF R VE+VNV
Sbjct: 126 VVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNV 185
Query: 181 IIATYSDD-------SGPMGEVRVFDSIMNYK---KEEAESLLSKLGIELK--------- 221
I++TY+D+ G V + + ++ A K G++
Sbjct: 186 IVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGD 245
Query: 222 ----PEDKEKDGKALLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDE 277
P+ K+ K +L I + + +K + +L E
Sbjct: 246 SFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLE------ 299
Query: 278 AAIGI------KNCDPNAPLMMYVSKMVPTSD 303
+ I K+ + A L + + K +P +D
Sbjct: 300 -KLEIVLKGDEKDLEGKALLKVVMRKFLPAAD 330
Score = 92.9 bits (230), Expect = 5e-21
Identities = 37/62 (59%), Positives = 49/62 (79%)
Query: 195 VRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKALLKVVMRTWLPAGEALLQMIAIH 254
R+F +IMN+KK+E LL KL I LK ++K+ +GKALLKVVMR +LPA +ALL+MI +H
Sbjct: 280 FRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLH 339
Query: 255 LP 256
LP
Sbjct: 340 LP 341
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 176 bits (447), Expect = 2e-52
Identities = 100/138 (72%), Positives = 116/138 (84%)
Query: 257 SPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSG 316
SPV AQ YR E LYEGP DD I IKNCDP A LM+YVSKMVPTSDKGRFYAFGRVF+G
Sbjct: 1 SPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAG 60
Query: 317 KVATGQKARIMGPNYIPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFL 376
V +GQK RI GPNY+PGKK+DL+ KAIQR +LMMGR+VE I+D P+GNI GLVG+DQFL
Sbjct: 61 TVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFL 120
Query: 377 VKTGTITTFKDAHNLRVM 394
+KTGT+TT + AHN++VM
Sbjct: 121 LKTGTLTTSETAHNMKVM 138
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 117
Score = 143 bits (363), Expect = 4e-41
Identities = 77/117 (65%), Positives = 85/117 (72%)
Query: 639 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTADLR 698
EPV+L EIQCPE AVGGIY VLN++RG V E Q GTP+F VKAYLPVNESFGFT +LR
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 699 SNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQETRKRKGLKEGLPDLQSYLDKL 755
TGGQAFPQ VFDHW L DP DP SK +V RKR G+KE +P Q Y DKL
Sbjct: 61 QATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 117
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 127 bits (321), Expect = 1e-33
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 32/221 (14%)
Query: 6 KNIRNMSVIAHVDHGKSTLTDSLVSKAGII--AGAKAGETRFTDTRKDEQERCITIKSTA 63
K +RN+ + AH+D GK+T T+ ++ G I G D + E+ER ITI +
Sbjct: 4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 63
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 123
+ ++ K IN+ID+PGHVDF+ EV ++RV DGA+VV D
Sbjct: 64 TTCFW--------------------KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFD 103
Query: 124 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIA 183
GV Q+ETV RQA ++ + F NKMD+ +L L + + ++
Sbjct: 104 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL-----GARPVVM 158
Query: 184 TYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPED 224
P+G F I++ + +A + + LG +++
Sbjct: 159 QL-----PIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIP 194
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 114 bits (287), Expect = 1e-29
Identities = 42/208 (20%), Positives = 72/208 (34%), Gaps = 24/208 (11%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAG-AKAGETRFTDTRKDEQERCITIKSTAISMYF 68
N+ I HVDHGK+TLT +L A + + D +E+ R ITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 64
Query: 69 ELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV 128
+ +D PGH D+ + DGA++VV G
Sbjct: 65 --------------------AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 104
Query: 129 CVQTETVLRQAIAERIKP-VLFMNKMDRALLELQLDA--EDLYQTFQRIVENVNVIIATY 185
QT + A + V+FMNK+D LD ++ + + +
Sbjct: 105 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIR 164
Query: 186 SDDSGPMGEVRVFDSIMNYKKEEAESLL 213
+ ++ + E + +
Sbjct: 165 GSALLALEQMHRNPKTRRGENEWVDKIW 192
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 79
Score = 101 bits (254), Expect = 8e-27
Identities = 61/79 (77%), Positives = 66/79 (83%)
Query: 395 KFSVSPVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIEESGEHIVAGAGELHLEIC 454
KFSVSPVV+VAVE KN DLPKLVEGLKRLSKSDP V + ESGEHIVAG GELHLEIC
Sbjct: 1 KFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEIC 60
Query: 455 LKDLEEDHACIPIKKSDPV 473
L+DLE DHA +P+K S PV
Sbjct: 61 LQDLEHDHAGVPLKISPPV 79
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 105 bits (264), Expect = 1e-26
Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 33/208 (15%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFE 69
N+ I HVDHGK+TLT ++ GAK + D +E+ R ITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY--- 61
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC 129
+ D PGH D+ + DG ++VV G
Sbjct: 62 -----------------STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM 104
Query: 130 VQTETVLRQAIAERIKP-VLFMNKMD-----RALLELQLDAEDLYQTFQRIVENVNVI-- 181
QT L A ++ V+++NK D + ++L+ +L F E +I
Sbjct: 105 PQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVG 164
Query: 182 -----IATYSDDSGPMGEVRVFDSIMNY 204
+ + G ++ D++ Y
Sbjct: 165 SALCALEQRDPELGLKSVQKLLDAVDTY 192
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 99.1 bits (247), Expect = 1e-25
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 637 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTAD 696
++EP+ E+ PE +G + G LN RRG + V++A++P+ E FG+ D
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEP--RGNAQVIRAFVPLAEMFGYATD 59
Query: 697 LRSNTGGQAFPQCVFDHWQVLPGDPTD 723
LRS T G+ FDH+Q +P +
Sbjct: 60 LRSKTQGRGSFVMFFDHYQEVPKQVQE 86
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 98.9 bits (246), Expect = 8e-24
Identities = 50/245 (20%), Positives = 90/245 (36%), Gaps = 29/245 (11%)
Query: 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA 63
K+K+ N+ VI HVD GKST T L+ K G I T + ++ + +
Sbjct: 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGI---------DKRTIEKFEKEAAELGKGS 52
Query: 64 ISMYFELD----DKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 119
+ LD +++ + + + +ID+PGH DF + D A+
Sbjct: 53 FKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAI 112
Query: 120 VVVDCVSGVCV-------QTETVLRQAIAERIKP-VLFMNKMDRALLELQLDAEDLYQTF 171
+++ G QT A ++ ++ +NKMD + F
Sbjct: 113 LIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS--------VKWDESRF 164
Query: 172 QRIVENVNVIIATYSDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKEKDGKA 231
Q IV+ + I + + V + + E + G E + + GK
Sbjct: 165 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKT 224
Query: 232 LLKVV 236
LL+ +
Sbjct: 225 LLEAI 229
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 96
Score = 91.1 bits (226), Expect = 8e-23
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 637 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEEMQVAGTPMFVVKAYLPVNESFGFTAD 696
L+EP+Y ++ P+ VG + L RRG + Q + VV A +P+ E +
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGA--LSVVHAEVPLAEVLEYYKA 59
Query: 697 LRSNTGGQAFPQCVFDHWQVLPGDPTDPGSKPYNVVQETRKRKG 740
L TGG F H+ +P + + R ++G
Sbjct: 60 LPGLTGGAGAYTLEFSHYAEVPPHLAQ-------RIVQERAQEG 96
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 93.7 bits (232), Expect = 3e-22
Identities = 44/169 (26%), Positives = 60/169 (35%), Gaps = 43/169 (25%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETR---------------FTDTRKDEQE 54
N+ VI HVDHGKSTL L+ G I E D K+E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 55 RCITIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRV 114
R +TI T + K + +ID+PGH DF +
Sbjct: 65 RGVTINLTFMRF--------------------ETKKYFFTIIDAPGHRDFVKNMITGASQ 104
Query: 115 TDGALVVVDCVSGVCVQTETVLRQAIAERIKP--------VLFMNKMDR 155
D A++VV G +V Q I ++ +NKMD
Sbjct: 105 ADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL 153
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 89.1 bits (220), Expect = 1e-20
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 3/152 (1%)
Query: 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAI 64
+K + +VD GKSTL L+ + +I + + +
Sbjct: 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVD 65
Query: 65 SMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 124
+ E + + + + + D+PGH ++ + D A+++VD
Sbjct: 66 GLQAEREQGITIDVAY---RYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDA 122
Query: 125 VSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156
GV QT A IK ++
Sbjct: 123 RYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 154
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 75
Score = 78.7 bits (194), Expect = 1e-18
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 400 PVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHIVAGAGELHLEICLKDL 458
PV+ VA+EPK AD KL + L RL++ P E+G I++G GEL LEI + L
Sbjct: 4 PVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRL 63
Query: 459 EEDHAC 464
+ +
Sbjct: 64 KREFKV 69
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 76.1 bits (186), Expect = 7e-16
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 22/150 (14%)
Query: 8 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGAKAGETRFTDTRKDEQERCITIKSTAIS 65
IR ++++ H GK+TLT++L+ K G G T TD + + T+++
Sbjct: 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP 61
Query: 66 MYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCV 125
+ F +G + L+D+PG+ DF E+ AL D ALV V
Sbjct: 62 LLF--------------------RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAE 101
Query: 126 SGVCVQTETVLRQAIAERIKPVLFMNKMDR 155
+GV V TE A + ++ + K+D+
Sbjct: 102 AGVQVGTERAWTVAERLGLPRMVVVTKLDK 131
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 74.2 bits (181), Expect = 1e-15
Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 7/171 (4%)
Query: 3 DKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKST 62
K + N+ V+ HVDHGK+TL ++ + E +
Sbjct: 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCK 62
Query: 63 AISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 122
Y + + + I+ ID+PGH + + + + DGA++VV
Sbjct: 63 KPEAYVTEPSCKSCGSDDEPKFLRR-----ISFIDAPGHEVLMATMLSGAALMDGAILVV 117
Query: 123 DCVSGVCVQTETVLRQAIAERIKPVL--FMNKMDRALLELQLDAEDLYQTF 171
A+ L NK+D E L + F
Sbjct: 118 AANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF 168
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 70.3 bits (172), Expect = 1e-15
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 400 PVVRVAVEPKNPADLPKLVEGLKRLSKSDPMVQCIIE-ESGEHIVAGAGELHLEICLKDL 458
P V VA+ PK D +L E L++L + DP ++ + E+GE ++ G GELHL + L
Sbjct: 4 PNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL 63
Query: 459 EEDHACIPIKKSDPVV 474
++ + ++ S P V
Sbjct: 64 QDYG--VEVEFSVPKV 77
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 74.5 bits (182), Expect = 2e-15
Identities = 33/187 (17%), Positives = 68/187 (36%), Gaps = 19/187 (10%)
Query: 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA 63
K N+ I HVD GKSTL +++ G++ + ++ ++ +
Sbjct: 20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDS 79
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 123
S E V + + +L+D+PGH + + + D ++V+
Sbjct: 80 TSEEREKGKTVEVGRAYFETEHRR-----FSLLDAPGHKGYVTNMINGASQADIGVLVIS 134
Query: 124 CVSGV-------CVQTETVLRQAIAERIKP-VLFMNKMDRALLELQLDAEDLYQTFQRIV 175
G QT A + I V+ +NKMD + + ++ V
Sbjct: 135 ARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP------SVQWSEERYKECV 188
Query: 176 ENVNVII 182
+ +++ +
Sbjct: 189 DKLSMFL 195
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 66.6 bits (161), Expect = 7e-13
Identities = 43/174 (24%), Positives = 62/174 (35%), Gaps = 24/174 (13%)
Query: 8 IRNM--SVIAHVDHGKSTLTDSLVSKAGII--AGAKAGETRFTDTRKDEQERCITIKSTA 63
IR+ SV+ HVDHGK+TL D + A AG T+ D E
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 123
S+ L ID+PGH F++ + D A+++VD
Sbjct: 63 FSIRETLPGLFF--------------------IDTPGHEAFTTLRKRGGALADLAILIVD 102
Query: 124 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDAEDLYQTFQRIVEN 177
G QT+ L R V+ NK+DR + +TF +
Sbjct: 103 INEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 60.4 bits (145), Expect = 4e-11
Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 18/172 (10%)
Query: 5 KKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAI 64
++ N+ ++ HVDHGK+TLT +L +TDT +E R ITIK
Sbjct: 2 RQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFA 48
Query: 65 SMYFELDDKDMVFITNPD---QTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVV 121
+ T+P + E ++ ID+PGH + + A + DGA++V
Sbjct: 49 DAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILV 108
Query: 122 VDCVSGVCVQTETVLRQAI--AERIKPVLFMNKMDRALLELQLDAEDLYQTF 171
+ A+ + ++ NK++ E L+ + F
Sbjct: 109 IAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF 160
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 58.1 bits (139), Expect = 7e-10
Identities = 27/208 (12%), Positives = 60/208 (28%), Gaps = 28/208 (13%)
Query: 13 VIAHVDHGKSTLTDSLVS------KAGIIA---------GAKAGETRFTDTRKDEQERCI 57
+ GK+TLT K + + + R T ++
Sbjct: 5 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGY 64
Query: 58 TIKSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDG 117
+ Y L +K F ++ + EK LID+PG ++ +R+ +
Sbjct: 65 GPNGAIVESYDRLMEK---FNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 118 -----ALVVVDCVSGVCVQTE-----TVLRQAIAERIKPVLFMNKMDRALLELQLDAEDL 167
+ + D L + + +NK+D E +
Sbjct: 122 LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKY 181
Query: 168 YQTFQRIVENVNVIIATYSDDSGPMGEV 195
++ + + + + + M +
Sbjct: 182 FEDIDYLTARLKLDPSMQGLMAYKMCSM 209
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 52.0 bits (123), Expect = 3e-08
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 2 MDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIK 60
MD K NI N+ + H+DHGK+TL+ L + T D + Q+R ITI
Sbjct: 1 MDFK-NI-NLGIFGHIDHGKTTLSKVLT---------EIASTSAHDKLPESQKRGITID 48
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 44.7 bits (105), Expect = 2e-06
Identities = 14/112 (12%), Positives = 35/112 (31%), Gaps = 16/112 (14%)
Query: 285 CDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAI 344
+ P + V K+ G+ A+ R++ G++ G +
Sbjct: 4 RFGDGPPLAKVFKVQVDPFMGQV-AYLRLYRGRLKPGDSLQSEAGQVRLP---------- 52
Query: 345 QRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNLRVMKF 396
+ MG+ + +E+ +G + G+ + + G +
Sbjct: 53 -HLYVPMGKDLLEVEEAEAGFVLGVPKAEG--LHRG--MVLWQGEKPESEEV 99
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 44.3 bits (104), Expect = 4e-06
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 274 HDDEAAIGIKNCDPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIP 333
E + + DPN PL K++ GR F RV+SG + +G
Sbjct: 10 TTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT-FIRVYSGTLTSGSYVYNTT----K 64
Query: 334 GKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTG-TITTFKD 387
G+KE + R + M + E +E++ +G++ +VG+ + TG T+
Sbjct: 65 GRKER-----VARLLRMHANHREEVEELKAGDLGAVVGLKE--TITGDTLVGEDA 112
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 37.0 bits (84), Expect = 0.004
Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 23/153 (15%)
Query: 4 KKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTA 63
+ + ++++ + GKSTL +++++K + G TR
Sbjct: 4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV---------------- 47
Query: 64 ISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 123
+D + VF+ K+ + + V ++ D ++V+D
Sbjct: 48 -DDEVFIDGRKYVFVDTAGLRRKS------RVEPRTVEKYSNYRVVDSIEKADVVVIVLD 100
Query: 124 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRA 156
G+ Q + + V+ NK D
Sbjct: 101 ATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 133
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 34.7 bits (79), Expect = 0.033
Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%)
Query: 10 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFE 69
N++V GKS+ ++L G E T E Y
Sbjct: 58 NVAVTGETGSGKSSFINTLR-------GIGNEEEGAAKTGVVEVTMERH-------PYKH 103
Query: 70 LDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC 129
+ ++VF P G +F + + +
Sbjct: 104 PNIPNVVFWDLPG----------------IGSTNFPPDTYLEKMKFYEYDFFIIISATRF 147
Query: 130 VQTETVLRQAIAERIKPVLF-MNKMDRAL---LELQLDAEDLYQTFQRIVENVNVIIATY 185
+ + + +AI+ K F K+D + + + D + Q I N
Sbjct: 148 KKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 207
Query: 186 SDDSGPMGEVRVFDSIMNYKKEEAESLLSKLGIELKPEDKE 226
P+ S N + L+ KL +L +
Sbjct: 208 GIAEPPI----FLLSNKNVCHYDFPVLMDKLISDLPIYKRH 244
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.9 bits (76), Expect = 0.039
Identities = 14/90 (15%), Positives = 32/90 (35%)
Query: 12 SVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELD 71
+++ + GKSTL + L+ + I KA TR + I ++ E
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 72 DKDMVFITNPDQTAKNEKGFLINLIDSPGH 101
+ ++ + +I +++
Sbjct: 69 RAINRLMNKAASSSIGDVELVIFVVEGTRW 98
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 33.2 bits (74), Expect = 0.059
Identities = 13/57 (22%), Positives = 20/57 (35%)
Query: 12 SVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYF 68
++ + GKSTL + LV K I + G TR E ++
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 60
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 32.0 bits (71), Expect = 0.17
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 12 SVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELD 71
+++ + GKSTL ++L+ + T R E I +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQ-TTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 72 DKDMVFITNPDQTAKNEKGFLINLIDSPGH 101
D F+ A + ++ ++D
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHP 97
>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId:
271]}
Length = 500
Score = 31.6 bits (71), Expect = 0.43
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 711 FDHWQVLPGDPTDPGSKPYN 730
+WQVLP PT G PY
Sbjct: 41 GRYWQVLPLGPTGYGDSPYQ 60
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 30.5 bits (68), Expect = 0.50
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 34/107 (31%)
Query: 20 GKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFIT 79
GK+ + F T I++ ELD K +
Sbjct: 18 GKTCVLFRFSED------------AFNSTFISTIGIDFKIRT------IELDGKRIKL-- 57
Query: 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 126
+ D+ G F + TA R G ++V D +
Sbjct: 58 --------------QIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 90
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 28.2 bits (63), Expect = 0.92
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 288 NAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNYIPGKKEDLYEKAIQRT 347
+ P ++ + + S +G GRV G + G++ I+G +K+
Sbjct: 3 DKPFLLPIEDVFSISGRG-TVVTGRVERGIIKVGEEVEIVGIKET--------QKSTCTG 53
Query: 348 ILMMGRYVEAIEDVPSGNICG--LVGVDQFLVKTGTI 382
+ M + +++ +G G L G+ + ++ G +
Sbjct: 54 VEMFR---KLLDEGRAGENVGVLLRGIKREEIERGQV 87
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 28.2 bits (63), Expect = 1.2
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 286 DPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPN 330
NAP +M ++ D G G++ +G + +M N
Sbjct: 5 KVNAPFIMPIASKY--KDLGTI-LEGKIEAGSIKKNSNVLVMPIN 46
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 29.2 bits (64), Expect = 1.3
Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 46/175 (26%)
Query: 13 VIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDD 72
+ + GK++L L + T+ S + D
Sbjct: 8 IAGPQNSGKTSLLTLLTT----------------------DSVRPTVVSQEPLSAADYDG 45
Query: 73 KDMVFITNPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT 132
+ + P S + + G + +VD T
Sbjct: 46 SGVTLVDFPGHVKLRY--------------KLSDYLKTRAKFVKGLIFMVDSTVDPKKLT 91
Query: 133 ET---------VLRQAIAERIKPVLFMNKMDRAL-LELQLDAEDLYQTFQRIVEN 177
T + + I ++ NK + + L Q+++E
Sbjct: 92 TTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 146
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.0 bits (64), Expect = 1.5
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 126
K + + D+ G F + TA R G ++V D
Sbjct: 49 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 86
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 27.2 bits (60), Expect = 2.2
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 286 DPNAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVATGQKARIMGPNY 331
+ + M + P G G + G V G + +++ N
Sbjct: 2 NTESYFKMPLDHAFPIKGAG-TVVTGTINKGIVKVGDELKVLPINM 46
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 28.3 bits (62), Expect = 3.0
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 124
K + + D+ G F + ++ R + G ++V D
Sbjct: 53 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDV 88
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 27.9 bits (61), Expect = 3.0
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 89 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 124
K + + D+ G + + TA R G +++ D
Sbjct: 52 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 87
>d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 198
Score = 27.6 bits (61), Expect = 4.7
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 11/95 (11%)
Query: 416 KLVEGLKRLSKSDPMVQCIIEESGEHI-----VAGAGELHLEI---CLKDLEEDHACIPI 467
++V + C + +H C K+ E C+
Sbjct: 50 EVVSLTEACCAEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERKLCMAA 109
Query: 468 KKSDPVVSYRETVSEESDQVCLSKSPNKHNRLFMK 502
K P + V +D++C ++ K + +
Sbjct: 110 LKHQP-QEFPTYVEPTNDEIC--EAFRKDPKEYAN 141
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF
{Bacillus subtilis [TaxId: 1423]}
Length = 73
Score = 25.9 bits (57), Expect = 4.9
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 330 NYIPGKKEDLYEKAIQRTILMMGRYVEAIED 360
++ P KE+L +A+ T ++ ++ D
Sbjct: 41 HFFPNGKEELAIEAVTYTGKIVEHLIQQSMD 71
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein
Hpr {Bacillus subtilis [TaxId: 1423]}
Length = 162
Score = 27.1 bits (59), Expect = 5.4
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 138 QAIAERIKPVLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDD 188
+ + + A+ + L+ F + E + +I Y DD
Sbjct: 106 TEVFWSLLEE--FDPTRNAVFKGSQPLYHLFGKFPEVAEMMCMIRHIYGDD 154
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.5 bits (60), Expect = 5.5
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 1/104 (0%)
Query: 1 MMDKKKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGET-RFTDTRKDEQERCITI 59
+ + N + V+ GKS+ +S++ + + E R + + I
Sbjct: 25 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNI 84
Query: 60 KSTAISMYFELDDKDMVFITNPDQTAKNEKGFLINLIDSPGHVD 103
T + + + I K L VD
Sbjct: 85 IDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVD 128
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 26.1 bits (57), Expect = 6.1
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 245 EALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIGIKNCDPNAPLMMYVSK 297
L Q + QK + P +++ +G PN +MM ++
Sbjct: 31 LDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.0 bits (58), Expect = 7.8
Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 16/188 (8%)
Query: 20 GKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFELDDKDMVFIT 79
GKSTL L + G + G TR + + + I + M + ++ +
Sbjct: 12 GKSTLIYRLT-GKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDE 70
Query: 80 NPDQTAKNEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQA 139
N K + ++ G R G +
Sbjct: 71 IVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKR-------------GEIPIDVEFYQFL 117
Query: 140 IAERIKPVLFMNKMDRALLELQLDAEDLYQTFQRIVENVNVIIATYSDDSGPMGEVRVFD 199
I ++ +NK+D+ + +Q L + F+ + ++ + S G R+ +
Sbjct: 118 RELDIPTIVAVNKLDK-IKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFG-DNIERLKN 175
Query: 200 SIMNYKKE 207
I +E
Sbjct: 176 RIFEVIRE 183
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.5 bits (57), Expect = 9.6
Identities = 7/61 (11%), Positives = 18/61 (29%)
Query: 9 RNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYF 68
R + + D GK+ L L++ ++ + + +T+
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 69 E 69
Sbjct: 61 R 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.400
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,863,443
Number of extensions: 141006
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 50
Length of query: 755
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 663
Effective length of database: 1,144,436
Effective search space: 758761068
Effective search space used: 758761068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)