Query psy16812
Match_columns 359
No_of_seqs 196 out of 1321
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 22:44:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1600|consensus 100.0 1.7E-92 3.6E-97 680.4 11.1 253 2-349 69-321 (321)
2 PLN02220 delta-9 acyl-lipid de 100.0 4.8E-79 1E-83 591.4 17.6 238 2-342 58-295 (299)
3 COG1398 OLE1 Fatty-acid desatu 100.0 8.1E-74 1.7E-78 541.8 9.1 239 3-342 49-288 (289)
4 cd03505 Delta9-FADS-like The D 100.0 1E-69 2.2E-74 492.1 14.0 174 2-332 5-178 (178)
5 KOG1600|consensus 99.9 1.1E-27 2.3E-32 231.8 2.1 96 95-191 219-318 (321)
6 PLN02220 delta-9 acyl-lipid de 99.9 5.4E-26 1.2E-30 221.1 5.1 89 98-187 203-295 (299)
7 COG1398 OLE1 Fatty-acid desatu 99.9 3.6E-25 7.8E-30 210.7 0.6 87 100-187 198-288 (289)
8 cd03505 Delta9-FADS-like The D 99.9 1.6E-24 3.4E-29 197.0 1.6 76 101-177 99-178 (178)
9 PF00487 FA_desaturase: Fatty 99.4 7.8E-13 1.7E-17 118.9 9.9 72 5-76 8-80 (257)
10 cd01060 Membrane-FADS-like The 99.3 4.5E-12 9.8E-17 105.1 7.9 118 4-144 3-122 (122)
11 cd03513 CrtW_beta-carotene-ket 98.0 0.0001 2.2E-09 69.8 13.1 38 261-300 172-215 (225)
12 cd03506 Delta6-FADS-like The D 97.9 6.6E-06 1.4E-10 75.6 3.7 52 24-75 21-73 (204)
13 cd03511 Rhizopine-oxygenase-li 97.5 0.00063 1.4E-08 65.5 9.6 49 25-73 66-115 (285)
14 cd03514 CrtR_beta-carotene-hyd 97.3 0.0022 4.7E-08 59.7 10.9 56 19-74 34-96 (207)
15 PLN02579 sphingolipid delta-4 96.6 0.03 6.5E-07 55.9 12.7 50 25-74 96-147 (323)
16 PLN03199 delta6-acyl-lipid des 96.5 0.1 2.2E-06 54.7 16.4 51 278-333 405-455 (485)
17 cd01060 Membrane-FADS-like The 96.5 0.0018 3.9E-08 53.4 2.8 42 258-299 74-122 (122)
18 PLN03198 delta6-acyl-lipid des 96.2 0.14 3E-06 54.4 15.3 51 278-333 449-499 (526)
19 cd03512 Alkane-hydroxylase Alk 95.9 0.029 6.3E-07 55.6 8.0 50 250-300 214-274 (314)
20 cd03509 DesA_FADS-like Fatty a 95.7 0.17 3.7E-06 49.6 12.3 49 25-74 49-100 (288)
21 COG3239 DesA Fatty acid desatu 95.7 0.07 1.5E-06 53.5 9.8 48 24-71 85-132 (343)
22 cd03510 Rhizobitoxine-FADS-lik 94.7 0.084 1.8E-06 47.9 6.5 50 25-74 43-93 (175)
23 PLN02598 omega-6 fatty acid de 93.6 1.1 2.3E-05 46.5 12.7 47 25-71 147-194 (421)
24 cd03507 Delta12-FADS-like The 89.5 0.73 1.6E-05 43.2 5.7 49 25-73 55-104 (222)
25 KOG4232|consensus 88.3 4 8.6E-05 42.4 10.3 54 274-332 350-403 (430)
26 PLN02505 omega-6 fatty acid de 87.0 1.8 3.8E-05 44.4 7.0 47 25-71 108-155 (381)
27 PLN02498 omega-3 fatty acid de 86.1 1.1 2.3E-05 47.0 4.8 47 25-71 172-219 (450)
28 COG5274 CYB5 Cytochrome b invo 84.2 0.24 5.3E-06 45.1 -0.7 39 275-316 3-41 (164)
29 cd03508 Delta4-sphingolipid-FA 84.1 2 4.4E-05 42.3 5.6 49 25-74 67-118 (289)
30 PF00487 FA_desaturase: Fatty 80.9 0.68 1.5E-05 41.4 0.9 26 122-147 206-231 (257)
31 cd03507 Delta12-FADS-like The 76.9 7 0.00015 36.7 6.4 22 279-300 195-216 (222)
32 COG5274 CYB5 Cytochrome b invo 51.4 4.2 9.1E-05 37.2 -0.4 38 121-161 4-41 (164)
33 cd03508 Delta4-sphingolipid-FA 47.6 84 0.0018 31.0 7.9 20 280-299 221-240 (289)
34 cd00547 QFR_TypeD_subunitD Qui 32.1 77 0.0017 27.5 4.2 41 17-66 44-84 (115)
35 cd03513 CrtW_beta-carotene-ket 31.2 25 0.00054 33.5 1.3 48 25-72 54-103 (225)
36 cd03506 Delta6-FADS-like The D 30.4 33 0.00071 31.4 1.9 27 124-150 161-187 (204)
37 PRK05470 fumarate reductase su 29.6 83 0.0018 27.5 4.1 41 17-66 48-88 (118)
38 KOG2987|consensus 25.4 22 0.00047 35.2 -0.2 54 14-67 82-137 (324)
39 PF10520 Kua-UEV1_localn: Kua- 24.3 95 0.0021 28.8 3.8 45 15-74 96-140 (178)
40 KOG4232|consensus 23.1 2.1E+02 0.0045 30.1 6.3 22 291-314 198-219 (430)
41 PF04116 FA_hydroxylase: Fatty 21.3 71 0.0015 25.5 2.1 12 51-63 23-34 (114)
No 1
>KOG1600|consensus
Probab=100.00 E-value=1.7e-92 Score=680.45 Aligned_cols=253 Identities=50% Similarity=0.925 Sum_probs=247.9
Q ss_pred eehhhHHHHHHhhhhhhhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCCCCCCCCCcchhHH
Q psy16812 2 SSQAFGLGFFSSIGVTAGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTDADPHNSTRGFFFS 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~GiT~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~~DPhsp~rGf~~s 81 (359)
++|++++|+++++|||+||||+||||||||++|+|++||+|+++|+||+|++||++||.||||||||+|||||.||||||
T Consensus 69 ~~~~~~l~~v~glgITag~HRlwsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~rGF~Fs 148 (321)
T KOG1600|consen 69 LLFAFFLYAVGGLGITAGYHRLWSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDTDADPHNPRRGFWFS 148 (321)
T ss_pred HHHHHHHHHHhhceeeeehhhhcccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhccccccCCCCCCcccchhhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCChhhhhhhhccccccccCCceEEEeeccCCCCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhH
Q psy16812 82 HIGWSLILPHPEVTEKVKVIDTSDVEKDWVVVWQYKNINPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNIST 161 (359)
Q Consensus 82 higWll~~~~p~~~~~~~~i~~tdlvns~~h~fg~r~~~s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~ 161 (359)
|+||++++++|++.+.++.+|++||..||..+|++|
T Consensus 149 HvgWl~~~k~p~~k~~G~~~dvsDL~~dp~v~Fq~k-------------------------------------------- 184 (321)
T KOG1600|consen 149 HVGWLLDKKHPQVKECGGRLDVSDLEADPVVRFQRK-------------------------------------------- 184 (321)
T ss_pred hhhhHhccCChHHHhhcCcCChhHhhhCceeeehhh--------------------------------------------
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhccccCCChHHHHHHHhhcCCCCCCCCCCCCcccccccchHHHHHHHHHHhHHHHHHHHhhhhhhHHHH
Q psy16812 162 AFVDLCALIGWAYDLKTVPTDMIQKRVARTGDGSHHHHHDGGTSFLRFRLYAPFAVFLCYILPTWVPWYFWGEDLWVAHC 241 (359)
Q Consensus 162 ~~I~~l~~lGla~dlk~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~lP~~~~~~~wg~~~~~~~~ 241 (359)
+|.+++.++|+++|+++|+++|||+.-.+++
T Consensus 185 -------------------------------------------------~y~~l~~~~~f~lp~~~p~~~~~~~~~~~~~ 215 (321)
T KOG1600|consen 185 -------------------------------------------------TYLLLMLFFCFLLPTLGPMYFWGEGMGLAFY 215 (321)
T ss_pred -------------------------------------------------hHHHHHHHHHHHHHHhCcceeeeecchhhhh
Confidence 8999999999999999999999999999999
Q ss_pred HhhhHHHHhhhhhhccccccccccCCCCCCCCCCCCchhhHHHHhcCCCCCCCcCCCCccccccccCCCccchhHHHHHH
Q psy16812 242 VATQLRHVITLHGTFLINSVAHMWGNKPYDKNINPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDL 321 (359)
Q Consensus 242 ~~~~~R~~~~~h~t~~VNS~~H~~G~rpy~~~~~s~n~~~~~~~t~GEgwHN~HH~fP~d~~~~~~~~~~~d~t~~~I~~ 321 (359)
++ ++|+|+++|+||+|||+||+||+||||++++|+||++++++|+|||||||||+||+|||+||.+ |++|+||.+|++
T Consensus 216 ~~-~~r~~~~lh~TwlVNSaaH~~G~rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~Fp~dyr~ge~~-y~~d~T~~~I~~ 293 (321)
T KOG1600|consen 216 VG-LFRYCIVLHATWLVNSAAHIWGSRPYDTNDTSRNNWWVSILTFGEGWHNYHHAFPWDYRHGEEW-YQLDITWYLIDF 293 (321)
T ss_pred HH-HHHHHHHHhhHHhhhhHHHHeecccCCCCCCcccceEEEEEEeccccccccccCchhhHhhhHH-hhhCcchHHHHH
Confidence 98 9999999999999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred HHHhCcccccccCCHHHHHHHHhhcCCC
Q psy16812 322 CALIGWAYDLKTVPTDMIQKRVARTGMF 349 (359)
Q Consensus 322 l~~lGla~dlk~~~~~~i~~~~~~~~~~ 349 (359)
+|+||||+|||+||+++|++++.+.||+
T Consensus 294 ~a~lGlA~D~K~~s~~~i~~~~~~~g~~ 321 (321)
T KOG1600|consen 294 FAALGLAYDLKTPSEAQIRRMALRRGDG 321 (321)
T ss_pred HHHhhhHhhcCCchHHHHHHHHHhccCC
Confidence 9999999999999999999999999985
No 2
>PLN02220 delta-9 acyl-lipid desaturase
Probab=100.00 E-value=4.8e-79 Score=591.42 Aligned_cols=238 Identities=26% Similarity=0.469 Sum_probs=210.5
Q ss_pred eehhhHHHHHHhhhhhhhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCCCCCCCCCcchhHH
Q psy16812 2 SSQAFGLGFFSSIGVTAGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTDADPHNSTRGFFFS 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~GiT~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~~DPhsp~rGf~~s 81 (359)
+++++++|+++++|||+||||+|||||||+++|+|++|+++|++|+||+|++||++||+||+|||||+|||||.+|||||
T Consensus 58 ~~~~~~~~~it~lGiT~GyHRl~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~~Gfw~s 137 (299)
T PLN02220 58 LRFGLILYIVTGLSITFSYHRNLAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFS 137 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCccccccCcHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCChhhhhhhhccccccccCCceEEEeeccCCCCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhH
Q psy16812 82 HIGWSLILPHPEVTEKVKVIDTSDVEKDWVVVWQYKNINPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNIST 161 (359)
Q Consensus 82 higWll~~~~p~~~~~~~~i~~tdlvns~~h~fg~r~~~s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~ 161 (359)
|+||++..+.+ ..+.++..+++|+.+||..+|++|
T Consensus 138 H~gWl~~~~~~-~~~~~~~~~~~Dl~~d~~~~~~~~-------------------------------------------- 172 (299)
T PLN02220 138 HVLWIFDTSYI-REKCGGRDNVMDLKQQWFYRFLRK-------------------------------------------- 172 (299)
T ss_pred HhHhhcCcchh-hhhcccccchHHHHhCcchHHHHH--------------------------------------------
Confidence 99999986543 223355678999999999988887
Q ss_pred HHHHHHHHhchhccccCCChHHHHHHHhhcCCCCCCCCCCCCcccccccchHHHHHHHHHHhHHHHHHHHhhhhhhHHHH
Q psy16812 162 AFVDLCALIGWAYDLKTVPTDMIQKRVARTGDGSHHHHHDGGTSFLRFRLYAPFAVFLCYILPTWVPWYFWGEDLWVAHC 241 (359)
Q Consensus 162 ~~I~~l~~lGla~dlk~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~lP~~~~~~~wg~~~~~~~~ 241 (359)
+|.. .++|..++.++||+.. .+.
T Consensus 173 -------------------------------------------------~~~~------~~l~~~~~~~~~gg~~--~~~ 195 (299)
T PLN02220 173 -------------------------------------------------TIGL------HILMFWTLLYLWGGLP--YLT 195 (299)
T ss_pred -------------------------------------------------HHHH------HHHHHHHHHHHHhHHH--HHH
Confidence 4432 2333444456787643 355
Q ss_pred HhhhHHHHhhhhhhccccccccccCCCCCCCCCCCCchhhHHHHhcCCCCCCCcCCCCccccccccCCCccchhHHHHHH
Q psy16812 242 VATQLRHVITLHGTFLINSVAHMWGNKPYDKNINPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDL 321 (359)
Q Consensus 242 ~~~~~R~~~~~h~t~~VNS~~H~~G~rpy~~~~~s~n~~~~~~~t~GEgwHN~HH~fP~d~~~~~~~~~~~d~t~~~I~~ 321 (359)
+++++|+++++|+||+|||+||+||+||||++|+|+||++++++|+|||||||||+||+|||+|..| ||+||||++|++
T Consensus 196 wg~~~r~~~~~h~tw~VNS~~H~~G~rpy~~~d~srN~~~lallt~GEgwHNnHHafP~sar~G~~w-~~~D~t~~~I~~ 274 (299)
T PLN02220 196 WGVGVGGAIGYHVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESSARQGLEW-WQIDITWYLIRF 274 (299)
T ss_pred HHHHHHHHHHHhhhhccchhhhcccCCCCCCCCCcchhHHHHHHhccccccccccCCccchhhCCcC-CCcCchHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999999999999999877 899999999999
Q ss_pred HHHhCcccccccCCHHHHHHH
Q psy16812 322 CALIGWAYDLKTVPTDMIQKR 342 (359)
Q Consensus 322 l~~lGla~dlk~~~~~~i~~~ 342 (359)
|++||||+|||+|++++++++
T Consensus 275 l~~lGLa~dlk~p~~~~~~~~ 295 (299)
T PLN02220 275 FEVLGLATDVKLPTEAQKRKM 295 (299)
T ss_pred HHHhCCcccccCCcHHHHHhH
Confidence 999999999998886665443
No 3
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=100.00 E-value=8.1e-74 Score=541.80 Aligned_cols=239 Identities=32% Similarity=0.617 Sum_probs=211.6
Q ss_pred ehhhHHHHHHhhhhhhhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCCCCCCCC-CcchhHH
Q psy16812 3 SQAFGLGFFSSIGVTAGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTDADPHNS-TRGFFFS 81 (359)
Q Consensus 3 ~~~~~~~~~~~~GiT~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~~DPhsp-~rGf~~s 81 (359)
++++++|.++++|||+|+||+|||||||+++++|++|++++++++||++++|+++||.||+|||||.|||++ .+|||||
T Consensus 49 i~~l~~y~~~~igIt~G~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~tDTd~DPh~~~~kGfw~s 128 (289)
T COG1398 49 IFTLAYYLIGGIGITLGLHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKTDTDQDPHYDSFKGFWWS 128 (289)
T ss_pred HHHHHHHHhccceeeeehhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhcccCCCCCCCccccccchhh
Confidence 678899999999999999999999999999999999999999999999999999999999999999999554 7999999
Q ss_pred HhhhhcccCChhhhhhhhccccccccCCceEEEeeccCCCCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhH
Q psy16812 82 HIGWSLILPHPEVTEKVKVIDTSDVEKDWVVVWQYKNINPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNIST 161 (359)
Q Consensus 82 higWll~~~~p~~~~~~~~i~~tdlvns~~h~fg~r~~~s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~ 161 (359)
|+||++..+.. .....+..++-.|....|.+|
T Consensus 129 higWm~~~~~~----~~~r~~~~~~~kd~~~~~~~r-------------------------------------------- 160 (289)
T COG1398 129 HIGWMLLYSAE----AKDRETIQKLGKDIPLDWQHR-------------------------------------------- 160 (289)
T ss_pred hcceeeecchh----hcChhHHHHhCCCchhhHHHH--------------------------------------------
Confidence 99999997651 112233456666666666666
Q ss_pred HHHHHHHHhchhccccCCChHHHHHHHhhcCCCCCCCCCCCCcccccccchHHHHHHHHHHhHHHHHHHHhhhhhhHHHH
Q psy16812 162 AFVDLCALIGWAYDLKTVPTDMIQKRVARTGDGSHHHHHDGGTSFLRFRLYAPFAVFLCYILPTWVPWYFWGEDLWVAHC 241 (359)
Q Consensus 162 ~~I~~l~~lGla~dlk~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~lP~~~~~~~wg~~~~~~~~ 241 (359)
+|...+.++.+++|+++ .|++|+ +.+++
T Consensus 161 -------------------------------------------------~~~~~~~l~~i~~~l~~-~~~~gg--~~gl~ 188 (289)
T COG1398 161 -------------------------------------------------NLYLIALLMQIVLPLFI-GYALGG--WLGLI 188 (289)
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHH-HHHhcc--hhHHH
Confidence 56666777888888544 567775 45589
Q ss_pred HhhhHHHHhhhhhhccccccccccCCCCCCCCCCCCchhhHHHHhcCCCCCCCcCCCCccccccccCCCccchhHHHHHH
Q psy16812 242 VATQLRHVITLHGTFLINSVAHMWGNKPYDKNINPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDL 321 (359)
Q Consensus 242 ~~~~~R~~~~~h~t~~VNS~~H~~G~rpy~~~~~s~n~~~~~~~t~GEgwHN~HH~fP~d~~~~~~~~~~~d~t~~~I~~ 321 (359)
++++.|+++++|+||+|||+||.+|+||||.+|+|||++|+||+|||||||||||+||.|||+|.+| ||+||||+.|++
T Consensus 189 ~~gv~r~~~~~hat~~VNsl~H~~Gyr~fd~~d~arN~ww~al~t~GEgwHNnHHafp~~ar~g~kW-we~D~tw~~I~l 267 (289)
T COG1398 189 WGGVQRLVLVQHATWCVNSLGHYIGYRPFDCRDTARNCWWVALVTFGEGWHNNHHAFPNSARNGLKW-WEFDVTWWIIKL 267 (289)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCccceeEEEEeecccccccccccCcchhhcCcee-EEeccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 999999999999
Q ss_pred HHHhCcccccccCCHHHHHHH
Q psy16812 322 CALIGWAYDLKTVPTDMIQKR 342 (359)
Q Consensus 322 l~~lGla~dlk~~~~~~i~~~ 342 (359)
++.||||+++|++|+..+++.
T Consensus 268 ~s~lGLA~~~k~~p~~~~~~~ 288 (289)
T COG1398 268 LSLLGLAKVVKLAPKARIGEG 288 (289)
T ss_pred HHHHhHHHhcccCcHHHHhcc
Confidence 999999999999998877653
No 4
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=100.00 E-value=1e-69 Score=492.12 Aligned_cols=174 Identities=47% Similarity=0.906 Sum_probs=168.7
Q ss_pred eehhhHHHHHHhhhhhhhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCCCCCCCCCcchhHH
Q psy16812 2 SSQAFGLGFFSSIGVTAGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTDADPHNSTRGFFFS 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~GiT~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~~DPhsp~rGf~~s 81 (359)
++|++++|+++++|+|+||||||||||||+++|+|++|++++++|+||||++|+++||+||+|||||+|||||.+|||++
T Consensus 5 ~~~~~~~~~~~~lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~DPhs~~~gf~~~ 84 (178)
T cd03505 5 LVFLVLYYLLTGLGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDGDPHSPKRGFWFS 84 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCCCCCCcccCcHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCChhhhhhhhccccccccCCceEEEeeccCCCCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhH
Q psy16812 82 HIGWSLILPHPEVTEKVKVIDTSDVEKDWVVVWQYKNINPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNIST 161 (359)
Q Consensus 82 higWll~~~~p~~~~~~~~i~~tdlvns~~h~fg~r~~~s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~ 161 (359)
|+||+
T Consensus 85 h~gW~--------------------------------------------------------------------------- 89 (178)
T cd03505 85 HVGWL--------------------------------------------------------------------------- 89 (178)
T ss_pred HHhhH---------------------------------------------------------------------------
Confidence 99996
Q ss_pred HHHHHHHHhchhccccCCChHHHHHHHhhcCCCCCCCCCCCCcccccccchHHHHHHHHHHhHHHHHHHHhhhhhhHHHH
Q psy16812 162 AFVDLCALIGWAYDLKTVPTDMIQKRVARTGDGSHHHHHDGGTSFLRFRLYAPFAVFLCYILPTWVPWYFWGEDLWVAHC 241 (359)
Q Consensus 162 ~~I~~l~~lGla~dlk~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~lP~~~~~~~wg~~~~~~~~ 241 (359)
T Consensus 90 -------------------------------------------------------------------------------- 89 (178)
T cd03505 90 -------------------------------------------------------------------------------- 89 (178)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhHHHHhhhhhhccccccccccCCCCCCCCCCCCchhhHHHHhcCCCCCCCcCCCCccccccccCCCccchhHHHHHH
Q psy16812 242 VATQLRHVITLHGTFLINSVAHMWGNKPYDKNINPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDL 321 (359)
Q Consensus 242 ~~~~~R~~~~~h~t~~VNS~~H~~G~rpy~~~~~s~n~~~~~~~t~GEgwHN~HH~fP~d~~~~~~~~~~~d~t~~~I~~ 321 (359)
++++|+++++|+||+|||+||+||+||||++|+|+||++++++|+|||||||||+||+|||+|..+ ||+|||+++|++
T Consensus 90 -~~~~r~~~~~h~t~~VNs~~H~~G~r~~~~~~~s~n~~~~~llt~GEg~HNnHHafP~~ar~g~~~-~~~D~t~~~I~~ 167 (178)
T cd03505 90 -GGLLRIVLVLHATWLVNSLAHMWGYRPYDTRDTSRNNWWVALLTFGEGWHNNHHAFPGDARNGLKW-YQIDPTKWVIRL 167 (178)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhHHHHHHHccccccccccCCcchhhhCCcC-CCcCchHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999766 999999999999
Q ss_pred HHHhCcccccc
Q psy16812 322 CALIGWAYDLK 332 (359)
Q Consensus 322 l~~lGla~dlk 332 (359)
|++||||+|||
T Consensus 168 l~~lGla~~lk 178 (178)
T cd03505 168 LEKLGLAWDLK 178 (178)
T ss_pred HHHcCCcccCC
Confidence 99999999997
No 5
>KOG1600|consensus
Probab=99.93 E-value=1.1e-27 Score=231.80 Aligned_cols=96 Identities=35% Similarity=0.768 Sum_probs=89.0
Q ss_pred hhhhhccccccccCCceEEEeeccCC----CCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhHHHHHHHHHh
Q psy16812 95 TEKVKVIDTSDVEKDWVVVWQYKNIN----PTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALI 170 (359)
Q Consensus 95 ~~~~~~i~~tdlvns~~h~fg~r~~~----s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~~~I~~l~~l 170 (359)
.+..-.+|++||+||.||+||.|+++ |+||+|++++++|||||||||+||+|||+||.| ||.|+|+.+|+++++|
T Consensus 219 ~r~~~~lh~TwlVNSaaH~~G~rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~Fp~dyr~ge~~-y~~d~T~~~I~~~a~l 297 (321)
T KOG1600|consen 219 FRYCIVLHATWLVNSAAHIWGSRPYDTNDTSRNNWWVSILTFGEGWHNYHHAFPWDYRHGEEW-YQLDITWYLIDFFAAL 297 (321)
T ss_pred HHHHHHHhhHHhhhhHHHHeecccCCCCCCcccceEEEEEEeccccccccccCchhhHhhhHH-hhhCcchHHHHHHHHh
Confidence 34444578999999999999999886 899999999999999999999999999999996 9999999999999999
Q ss_pred chhccccCCChHHHHHHHhhc
Q psy16812 171 GWAYDLKTVPTDMIQKRVART 191 (359)
Q Consensus 171 Gla~dlk~~~~~~i~~~~~~~ 191 (359)
|||+|+|+|+++.+++++...
T Consensus 298 GlA~D~K~~s~~~i~~~~~~~ 318 (321)
T KOG1600|consen 298 GLAYDLKTPSEAQIRRMALRR 318 (321)
T ss_pred hhHhhcCCchHHHHHHHHHhc
Confidence 999999999999999998653
No 6
>PLN02220 delta-9 acyl-lipid desaturase
Probab=99.92 E-value=5.4e-26 Score=221.14 Aligned_cols=89 Identities=18% Similarity=0.378 Sum_probs=81.6
Q ss_pred hhccccccccCCceEEEeeccCC----CCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhHHHHHHHHHhchh
Q psy16812 98 VKVIDTSDVEKDWVVVWQYKNIN----PTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALIGWA 173 (359)
Q Consensus 98 ~~~i~~tdlvns~~h~fg~r~~~----s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~~~I~~l~~lGla 173 (359)
.-..+++++|||.+|+||+|+++ |+|+++++++|+|||||||||+||+|||+|.+| ||+|+|+++|++|++||||
T Consensus 203 ~~~~h~tw~VNS~~H~~G~rpy~~~d~srN~~~lallt~GEgwHNnHHafP~sar~G~~w-~~~D~t~~~I~~l~~lGLa 281 (299)
T PLN02220 203 AIGYHVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESSARQGLEW-WQIDITWYLIRFFEVLGLA 281 (299)
T ss_pred HHHHhhhhccchhhhcccCCCCCCCCCcchhHHHHHHhccccccccccCCccchhhCCcC-CCcCchHHHHHHHHHhCCc
Confidence 34578999999999999999986 899999999999999999999999999999999 9999999999999999999
Q ss_pred ccccCCChHHHHHH
Q psy16812 174 YDLKTVPTDMIQKR 187 (359)
Q Consensus 174 ~dlk~~~~~~i~~~ 187 (359)
+|+|.|+++.++++
T Consensus 282 ~dlk~p~~~~~~~~ 295 (299)
T PLN02220 282 TDVKLPTEAQKRKM 295 (299)
T ss_pred ccccCCcHHHHHhH
Confidence 99998876555443
No 7
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=99.90 E-value=3.6e-25 Score=210.73 Aligned_cols=87 Identities=26% Similarity=0.527 Sum_probs=83.2
Q ss_pred ccccccccCCceEEEeeccCC----CCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhHHHHHHHHHhchhcc
Q psy16812 100 VIDTSDVEKDWVVVWQYKNIN----PTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALIGWAYD 175 (359)
Q Consensus 100 ~i~~tdlvns~~h~fg~r~~~----s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~~~I~~l~~lGla~d 175 (359)
..+++++|||.+|.+|+|+++ |+|++++|++++|||||||||+||.|||+|.+| ||+|+|+++|++++.||||++
T Consensus 198 ~~hat~~VNsl~H~~Gyr~fd~~d~arN~ww~al~t~GEgwHNnHHafp~~ar~g~kW-we~D~tw~~I~l~s~lGLA~~ 276 (289)
T COG1398 198 VQHATWCVNSLGHYIGYRPFDCRDTARNCWWVALVTFGEGWHNNHHAFPNSARNGLKW-WEFDVTWWIIKLLSLLGLAKV 276 (289)
T ss_pred HHHHHHHHhhhhhhhcccccCCCCCccceeEEEEeecccccccccccCcchhhcCcee-EEeccHHHHHHHHHHHhHHHh
Confidence 457899999999999999986 889999999999999999999999999999999 999999999999999999999
Q ss_pred ccCCChHHHHHH
Q psy16812 176 LKTVPTDMIQKR 187 (359)
Q Consensus 176 lk~~~~~~i~~~ 187 (359)
+|.+|+.+|++.
T Consensus 277 ~k~~p~~~~~~~ 288 (289)
T COG1398 277 VKLAPKARIGEG 288 (289)
T ss_pred cccCcHHHHhcc
Confidence 999999998874
No 8
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=99.89 E-value=1.6e-24 Score=197.01 Aligned_cols=76 Identities=32% Similarity=0.721 Sum_probs=72.6
Q ss_pred cccccccCCceEEEeeccCC----CCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhHHHHHHHHHhchhccc
Q psy16812 101 IDTSDVEKDWVVVWQYKNIN----PTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALIGWAYDL 176 (359)
Q Consensus 101 i~~tdlvns~~h~fg~r~~~----s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~~~I~~l~~lGla~dl 176 (359)
.+.++++||.+|+||+|+++ |+|+++++++|+|||||||||+||+|||+|.+| ||+|+|+++|++|++||||+|+
T Consensus 99 ~h~t~~VNs~~H~~G~r~~~~~~~s~n~~~~~llt~GEg~HNnHHafP~~ar~g~~~-~~~D~t~~~I~~l~~lGla~~l 177 (178)
T cd03505 99 LHATWLVNSLAHMWGYRPYDTRDTSRNNWWVALLTFGEGWHNNHHAFPGDARNGLKW-YQIDPTKWVIRLLEKLGLAWDL 177 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCchhhHHHHHHHccccccccccCCcchhhhCCcC-CCcCchHHHHHHHHHcCCcccC
Confidence 36789999999999999985 899999999999999999999999999999999 9999999999999999999999
Q ss_pred c
Q psy16812 177 K 177 (359)
Q Consensus 177 k 177 (359)
|
T Consensus 178 k 178 (178)
T cd03505 178 K 178 (178)
T ss_pred C
Confidence 7
No 9
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.42 E-value=7.8e-13 Score=118.90 Aligned_cols=72 Identities=24% Similarity=0.199 Sum_probs=63.7
Q ss_pred hhHHHHHHhhhhhhhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCCC-CCCCCCc
Q psy16812 5 AFGLGFFSSIGVTAGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTDA-DPHNSTR 76 (359)
Q Consensus 5 ~~~~~~~~~~GiT~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~~-DPhsp~r 76 (359)
+.++.....++...+.++-.+|+++..++++..++..+.++..+++...|...|+.||+++++++ ||.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 8 LALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 44455566788999999999999999999999999888888888899999999999999999888 9999865
No 10
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.32 E-value=4.5e-12 Score=105.07 Aligned_cols=118 Identities=32% Similarity=0.488 Sum_probs=82.9
Q ss_pred hhhHHHHHHhhhhhhhHHhhhhcccccC-ChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCC-CCCCCCCcchhHH
Q psy16812 4 QAFGLGFFSSIGVTAGAHRLWSHHSYKA-KWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTD-ADPHNSTRGFFFS 81 (359)
Q Consensus 4 ~~~~~~~~~~~GiT~G~HRl~sHRsfka-~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~-~DPhsp~rGf~~s 81 (359)
+++++.++.+++....+|+. +|++|.. +++-+++..+++. ....++..|...|..||++++++ +||.++ ..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~H~~-~H~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~--~~~~~ 78 (122)
T cd01060 3 LALLLGLLGGLGLTVLAHEL-GHRSFFRSRWLNRLLGALLGL-ALGGSYGWWRRSHRRHHRYTNTPGKDPDSA--VNYLE 78 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhhhccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCcCCCCCCCccc--cchHh
Confidence 45566666677999999999 9999995 4556666666655 78889999999999999999998 999999 22323
Q ss_pred HhhhhcccCChhhhhhhhccccccccCCceEEEeeccCCCCchhhHHHhhcCccccCCCCCCC
Q psy16812 82 HIGWSLILPHPEVTEKVKVIDTSDVEKDWVVVWQYKNINPTENLFVSVASFGDGWHNYHHVFP 144 (359)
Q Consensus 82 higWll~~~~p~~~~~~~~i~~tdlvns~~h~fg~r~~~s~n~~~~a~~t~GEgwHN~HH~fP 144 (359)
|.+-..... +-.+. -.....+.+.++..+++.|+++|+.||.||
T Consensus 79 H~~~~~~~~--------------~~~~~-----~~~~~~~~~~~~~~~~~~g~~~H~~HHl~P 122 (122)
T cd01060 79 HYGGDRPFD--------------TDGEW-----LRTTDNSRNGWLNLLLTGGLGYHNEHHLFP 122 (122)
T ss_pred hcCCCCCcc--------------ccccc-----ccccccCcccHHHHHHhcccccccccccCc
Confidence 332111100 00000 011112556678888888899999999998
No 11
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=98.01 E-value=0.0001 Score=69.80 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=32.6
Q ss_pred cccccCCCCCCCCCCCCc---hhhHHHHh---cCCCCCCCcCCCCc
Q psy16812 261 VAHMWGNKPYDKNINPTE---NLFVSVAS---FGDGWHNYHHVFPW 300 (359)
Q Consensus 261 ~~H~~G~rpy~~~~~s~n---~~~~~~~t---~GEgwHN~HH~fP~ 300 (359)
+.|.-+++||+...+|+. +.++++++ || .|+-||.||.
T Consensus 172 lpH~~~~~~~~~~~~a~~~~~~~~~~~l~c~~fg--yH~eHH~fP~ 215 (225)
T cd03513 172 LPHRPGRGGFADRHRARSSRLSPVLSFLTCYHFG--YHHEHHLSPS 215 (225)
T ss_pred cCCCCCCCCCCCcccceecCccHHHHHHHHHhcC--cchhhccCCC
Confidence 789999999998777766 78899988 66 9999999993
No 12
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=97.95 E-value=6.6e-06 Score=75.59 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=44.2
Q ss_pred hhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC-CCCCCCCCC
Q psy16812 24 WSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD-TDADPHNST 75 (359)
Q Consensus 24 ~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD-t~~DPhsp~ 75 (359)
.+|+++..++++..++..........|...|-..|..||++++ .++||--..
T Consensus 21 ~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~ 73 (204)
T cd03506 21 AGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDT 73 (204)
T ss_pred ccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCc
Confidence 5799999999999988888777777899999999999999997 458886653
No 13
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=97.47 E-value=0.00063 Score=65.52 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=41.3
Q ss_pred hcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcC-CCCCCCCC
Q psy16812 25 SHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYT-DTDADPHN 73 (359)
Q Consensus 25 sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~s-Dt~~DPhs 73 (359)
+|+++..++++..++..+.++....+...|...|..||+++ |+++||-.
T Consensus 66 ~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~ 115 (285)
T cd03511 66 VHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPEL 115 (285)
T ss_pred hcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCC
Confidence 79999889998888877766666678889999999999999 56788854
No 14
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=97.32 E-value=0.0022 Score=59.67 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=41.9
Q ss_pred hHHhhh------hcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCC-CCCCCC
Q psy16812 19 GAHRLW------SHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTD-ADPHNS 74 (359)
Q Consensus 19 G~HRl~------sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~-~DPhsp 74 (359)
..++++ +|+++-.++++-.++..+..+....+...|...|..||+++.++ +||-..
T Consensus 34 ~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~ 96 (207)
T cd03514 34 SLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF 96 (207)
T ss_pred HHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH
Confidence 445555 79999888887777766655544557789999999999999754 887543
No 15
>PLN02579 sphingolipid delta-4 desaturase
Probab=96.64 E-value=0.03 Score=55.87 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=36.1
Q ss_pred hcccccCChHHHHHHHHHHHH-hhchhhHHHHHHhhhhhhcCC-CCCCCCCC
Q psy16812 25 SHHSYKAKWPMRLLLAIFQTI-GIQYSILNWVRDHRLHHKYTD-TDADPHNS 74 (359)
Q Consensus 25 sHRsfka~~~l~~~l~i~~~~-a~qg~~~~Wv~~HR~HH~~sD-t~~DPhsp 74 (359)
+|+++-.++++-.++.++..+ .+.....+|-+.|..||+++- .+.||--|
T Consensus 96 ~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~ 147 (323)
T PLN02579 96 SHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIP 147 (323)
T ss_pred hHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCC
Confidence 688888888888888776554 333344579999999999994 44566555
No 16
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=96.55 E-value=0.1 Score=54.73 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=40.2
Q ss_pred chhhHHHHhcCCCCCCCcCCCCccccccccCCCccchhHHHHHHHHHhCccccccc
Q psy16812 278 ENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALIGWAYDLKT 333 (359)
Q Consensus 278 n~~~~~~~t~GEgwHN~HH~fP~d~~~~~~~~~~~d~t~~~I~~l~~lGla~dlk~ 333 (359)
++.++..++.|=-.|==||-||.-.|.- +. .....+-++|++-|+-|....
T Consensus 405 ~s~~~~wf~GGLN~QIEHHLFP~mp~~~-y~----~i~piVk~~C~k~glpY~~~~ 455 (485)
T PLN03199 405 PQAFVDWFCGGLQYQVDHHLFPMLPRHN-IA----KCHALVESFCKEWGVKYHEAD 455 (485)
T ss_pred cchHHHHHhccchhhhhhhcCCCCchhh-HH----hhhHHHHHHHHHhCCCccccC
Confidence 3579999998887777799999766553 22 468889999999999998654
No 17
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=96.53 E-value=0.0018 Score=53.39 Aligned_cols=42 Identities=33% Similarity=0.667 Sum_probs=35.0
Q ss_pred ccccccccCCCCCCCC-------CCCCchhhHHHHhcCCCCCCCcCCCC
Q psy16812 258 INSVAHMWGNKPYDKN-------INPTENLFVSVASFGDGWHNYHHVFP 299 (359)
Q Consensus 258 VNS~~H~~G~rpy~~~-------~~s~n~~~~~~~t~GEgwHN~HH~fP 299 (359)
++++.|.....+.+.+ +.+.|.++..+++.|+++|+.||.||
T Consensus 74 ~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~H~~HHl~P 122 (122)
T cd01060 74 VNYLEHYGGDRPFDTDGEWLRTTDNSRNGWLNLLLTGGLGYHNEHHLFP 122 (122)
T ss_pred cchHhhcCCCCCcccccccccccccCcccHHHHHHhcccccccccccCc
Confidence 7888998877666543 35678889999999999999999998
No 18
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=96.21 E-value=0.14 Score=54.37 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=41.8
Q ss_pred chhhHHHHhcCCCCCCCcCCCCccccccccCCCccchhHHHHHHHHHhCccccccc
Q psy16812 278 ENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALIGWAYDLKT 333 (359)
Q Consensus 278 n~~~~~~~t~GEgwHN~HH~fP~d~~~~~~~~~~~d~t~~~I~~l~~lGla~dlk~ 333 (359)
.++++..++.|=..|==||-||.-.+.- +. .....+-.+|++-|+-|..+.
T Consensus 449 ~~~~~~wf~GGLN~QiEHHLFP~iP~~~-l~----~i~piVk~~C~k~GlpY~~~~ 499 (526)
T PLN03198 449 ANIFNDWFTGGLNRQIEHHLFPTMPRHN-LN----KIAPQVEAFCIKHGLVYEDVS 499 (526)
T ss_pred CchHHHHhhcCCcccchhhcCCCCchhh-HH----HHhHHHHHHHHHcCCCCCCCC
Confidence 3689999999999999999999655543 22 577788899999999999874
No 19
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=95.88 E-value=0.029 Score=55.59 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=33.2
Q ss_pred hhhhhhccccccccccCCC-------CCCCC--CCC--CchhhHHHHhcCCCCCCCcCCCCc
Q psy16812 250 ITLHGTFLINSVAHMWGNK-------PYDKN--INP--TENLFVSVASFGDGWHNYHHVFPW 300 (359)
Q Consensus 250 ~~~h~t~~VNS~~H~~G~r-------py~~~--~~s--~n~~~~~~~t~GEgwHN~HH~fP~ 300 (359)
+..-..-++|.+-|. |-. .||.. .-| .|+....++++-=+.|--||++|.
T Consensus 214 ~g~~~l~~~nY~EHy-GL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~ 274 (314)
T cd03512 214 YAKSLLELVNYIEHY-GLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPT 274 (314)
T ss_pred HHHHHHHHHHHHHhc-CCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCC
Confidence 344344467888774 311 23322 123 447899999999999999999994
No 20
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=95.68 E-value=0.17 Score=49.56 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=35.5
Q ss_pred hcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC---CCCCCCCC
Q psy16812 25 SHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD---TDADPHNS 74 (359)
Q Consensus 25 sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD---t~~DPhsp 74 (359)
+|.++-.++++-.++.... +....+...|-..|-.||++++ .+.||-+.
T Consensus 49 ~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~ 100 (288)
T cd03509 49 LHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESN 100 (288)
T ss_pred hccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccc
Confidence 6888888888877776542 2222456699999999999984 35677654
No 21
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=95.67 E-value=0.07 Score=53.50 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=39.5
Q ss_pred hhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCCCCC
Q psy16812 24 WSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTDADP 71 (359)
Q Consensus 24 ~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~~DP 71 (359)
..|+||..++++--.+.-+.+.....++..|-..|..||++|.+++||
T Consensus 85 ~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d 132 (343)
T COG3239 85 CGHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDD 132 (343)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCC
Confidence 369999999998777776656555567888988899999999888888
No 22
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=94.72 E-value=0.084 Score=47.89 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=38.3
Q ss_pred hcccccCChHHHHHHH-HHHHHhhchhhHHHHHHhhhhhhcCCCCCCCCCC
Q psy16812 25 SHHSYKAKWPMRLLLA-IFQTIGIQYSILNWVRDHRLHHKYTDTDADPHNS 74 (359)
Q Consensus 25 sHRsfka~~~l~~~l~-i~~~~a~qg~~~~Wv~~HR~HH~~sDt~~DPhsp 74 (359)
+|+++-.++.+..++. ++.++....+...|-..|..||+++.|++||--.
T Consensus 43 ~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~~~Dpd~~ 93 (175)
T cd03510 43 AHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGTEDDPDLA 93 (175)
T ss_pred HHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCCCCCCcHH
Confidence 6888877788777765 3434444457779999999999999999998765
No 23
>PLN02598 omega-6 fatty acid desaturase
Probab=93.64 E-value=1.1 Score=46.52 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=37.8
Q ss_pred hcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC-CCCCC
Q psy16812 25 SHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD-TDADP 71 (359)
Q Consensus 25 sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD-t~~DP 71 (359)
.|++|-.++++..++..+..+....+...|-..|+.||+++. .++||
T Consensus 147 ~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 194 (421)
T PLN02598 147 GHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDT 194 (421)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCC
Confidence 699999999888877665554445688899999999999994 67775
No 24
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=89.52 E-value=0.73 Score=43.24 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=37.4
Q ss_pred hcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCC-CCCCCC
Q psy16812 25 SHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDT-DADPHN 73 (359)
Q Consensus 25 sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt-~~DPhs 73 (359)
.|+++-.++++..++.....+....+...|...|..||+++-+ ++||--
T Consensus 55 ~H~~~~~~~~~N~~~g~~~~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~ 104 (222)
T cd03507 55 GHGSFSDNRRLNDIVGHILHSPLLVPYHSWRISHNRHHAHTGNLEGDEVW 104 (222)
T ss_pred CCcccccchhHHHHHHHHHHHHHhCChHHHHHHHHHHHhccCCCCCCCcc
Confidence 7999988888777776654444456788999999999999854 677543
No 25
>KOG4232|consensus
Probab=88.31 E-value=4 Score=42.45 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=41.3
Q ss_pred CCCCchhhHHHHhcCCCCCCCcCCCCccccccccCCCccchhHHHHHHHHHhCcccccc
Q psy16812 274 INPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALIGWAYDLK 332 (359)
Q Consensus 274 ~~s~n~~~~~~~t~GEgwHN~HH~fP~d~~~~~~~~~~~d~t~~~I~~l~~lGla~dlk 332 (359)
.+-....+...+..|=+.|==||-||.-.|.-. . -....+..+|++-|+.|-.+
T Consensus 350 ~n~~~~~f~dwl~ghln~qieHHLFPtmpr~nL-~----~v~P~Vke~c~k~~l~y~~~ 403 (430)
T KOG4232|consen 350 INVGPSKFSDWLSGHLNFQIEHHLFPTMPRHNL-N----KVAPLVKELCKKHGLPYREK 403 (430)
T ss_pred cccCchhHHHHHHhhhhhhHHhhcCCCCCccch-H----HHHHHHHHHHHHcCCccccc
Confidence 333446677888888889999999997776653 2 35678999999999998765
No 26
>PLN02505 omega-6 fatty acid desaturase
Probab=87.04 E-value=1.8 Score=44.38 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=35.8
Q ss_pred hcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC-CCCCC
Q psy16812 25 SHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD-TDADP 71 (359)
Q Consensus 25 sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD-t~~DP 71 (359)
.|+||-.++++--++..+.......+...|-..|+.||+++. .+.||
T Consensus 108 gH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~ 155 (381)
T PLN02505 108 GHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDE 155 (381)
T ss_pred cchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCc
Confidence 699998888877766543333445788899999999999994 56775
No 27
>PLN02498 omega-3 fatty acid desaturase
Probab=86.07 E-value=1.1 Score=47.02 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=38.6
Q ss_pred hcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC-CCCCC
Q psy16812 25 SHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD-TDADP 71 (359)
Q Consensus 25 sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD-t~~DP 71 (359)
.|++|-.++++--++..+..+....+...|-..|+.||+++- .++||
T Consensus 172 gHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~ 219 (450)
T PLN02498 172 GHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 219 (450)
T ss_pred cccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 699999988888777766556566788999999999999984 67776
No 28
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=84.16 E-value=0.24 Score=45.12 Aligned_cols=39 Identities=8% Similarity=-0.131 Sum_probs=35.2
Q ss_pred CCCchhhHHHHhcCCCCCCCcCCCCccccccccCCCccchhH
Q psy16812 275 NPTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNIST 316 (359)
Q Consensus 275 ~s~n~~~~~~~t~GEgwHN~HH~fP~d~~~~~~~~~~~d~t~ 316 (359)
++++.....+-+.||| ||||++|-|+++... +|+.|++.
T Consensus 3 s~~~~~~~~l~~~~~~--~~~~~~~~d~~~~~~-~~~~~~~~ 41 (164)
T COG5274 3 SKTSEKCVILSDGPKY--TNKLYAGKDHAALDW-DSLVQEHA 41 (164)
T ss_pred cccccceEEEeecCCc--ceeeecCccHHHHhH-HHhhcchh
Confidence 5688889999999999 999999999999964 49999998
No 29
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=84.06 E-value=2 Score=42.26 Aligned_cols=49 Identities=24% Similarity=0.240 Sum_probs=32.2
Q ss_pred hcccccCChHHHHHHHHHHHHhhchhhH--HHHHHhhhhhhcCCCC-CCCCCC
Q psy16812 25 SHHSYKAKWPMRLLLAIFQTIGIQYSIL--NWVRDHRLHHKYTDTD-ADPHNS 74 (359)
Q Consensus 25 sHRsfka~~~l~~~l~i~~~~a~qg~~~--~Wv~~HR~HH~~sDt~-~DPhsp 74 (359)
+|+++-.++.+-.++..+..+ .++.++ .|-..|..||+++-++ .||=-+
T Consensus 67 ~H~~~f~~~~~N~~~g~~~~~-~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~ 118 (289)
T cd03508 67 SHNLAFGKPLWNRLFGIFANL-PIGVPYSISFKKYHLEHHRYLGEDGLDTDIP 118 (289)
T ss_pred HHHhhcCChHHHHHHHHHHHH-HhcCChhhHHHHHHHHhccCCCCCCCCCCcc
Confidence 688777777776666654333 223233 5889999999998644 466544
No 30
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=80.90 E-value=0.68 Score=41.39 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.5
Q ss_pred CchhhHHHhhcCccccCCCCCCCcch
Q psy16812 122 TENLFVSVASFGDGWHNYHHVFPWDY 147 (359)
Q Consensus 122 ~n~~~~a~~t~GEgwHN~HH~fP~d~ 147 (359)
.++.++..+++|+++|+.||.||.-.
T Consensus 206 ~~~~~~~~~~~~~~~H~~HHl~P~vp 231 (257)
T PF00487_consen 206 HNSWWLNWLTGGLNYHIEHHLFPGVP 231 (257)
T ss_pred cCchhhhccccCCCChHHhCCCCCcC
Confidence 35688899999999999999999744
No 31
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=76.94 E-value=7 Score=36.67 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.3
Q ss_pred hhhHHHHhcCCCCCCCcCCCCc
Q psy16812 279 NLFVSVASFGDGWHNYHHVFPW 300 (359)
Q Consensus 279 ~~~~~~~t~GEgwHN~HH~fP~ 300 (359)
+.++..++.|=+.|-=||.||.
T Consensus 195 ~~~~~~l~~~i~~hv~HHlfP~ 216 (222)
T cd03507 195 GGWLNWLTHIIGTHVAHHLFPR 216 (222)
T ss_pred cHHHHHHhcCCCcccchhcCCC
Confidence 4577999999999999999995
No 32
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=51.39 E-value=4.2 Score=37.21 Aligned_cols=38 Identities=8% Similarity=-0.207 Sum_probs=32.3
Q ss_pred CCchhhHHHhhcCccccCCCCCCCcchhhhhccccccchhH
Q psy16812 121 PTENLFVSVASFGDGWHNYHHVFPWDYKNAELWNYKFNIST 161 (359)
Q Consensus 121 s~n~~~~a~~t~GEgwHN~HH~fP~d~r~ge~~~~~~D~t~ 161 (359)
+++....++.+.||| ||||.+|-|++....| |+.|++.
T Consensus 4 ~~~~~~~~l~~~~~~--~~~~~~~~d~~~~~~~-~~~~~~~ 41 (164)
T COG5274 4 KTSEKCVILSDGPKY--TNKLYAGKDHAALDWD-SLVQEHA 41 (164)
T ss_pred ccccceEEEeecCCc--ceeeecCccHHHHhHH-Hhhcchh
Confidence 455566677788999 9999999999999998 8888887
No 33
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=47.60 E-value=84 Score=30.96 Aligned_cols=20 Identities=40% Similarity=0.710 Sum_probs=18.7
Q ss_pred hhHHHHhcCCCCCCCcCCCC
Q psy16812 280 LFVSVASFGDGWHNYHHVFP 299 (359)
Q Consensus 280 ~~~~~~t~GEgwHN~HH~fP 299 (359)
.++.++++.-|.|+=||.||
T Consensus 221 ~~~~~~~~n~~yH~~HH~~p 240 (289)
T cd03508 221 GPLNLLTFNVGYHNEHHDFP 240 (289)
T ss_pred HHHHHHhhccChHHHhcCCC
Confidence 47799999999999999999
No 34
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=32.14 E-value=77 Score=27.55 Aligned_cols=41 Identities=24% Similarity=0.548 Sum_probs=31.0
Q ss_pred hhhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC
Q psy16812 17 TAGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD 66 (359)
Q Consensus 17 T~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD 66 (359)
..+|.|..+ |-.++.-+.++..+-.+ --|.+.||.||.--|
T Consensus 44 a~~y~~i~a---Fa~s~iG~l~ll~~i~l------plWh~~HRihh~lHD 84 (115)
T cd00547 44 ALSYDRIIA---FAQSWIGKLFLLVLIIL------PMWHAMHRIHHGLHD 84 (115)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHHHH------HHHHHHHHHHHhhhc
Confidence 678999854 88888877776655333 469999999998555
No 35
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=31.25 E-value=25 Score=33.47 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=33.3
Q ss_pred hccccc-CChHHHHHHHHHH-HHhhchhhHHHHHHhhhhhhcCCCCCCCC
Q psy16812 25 SHHSYK-AKWPMRLLLAIFQ-TIGIQYSILNWVRDHRLHHKYTDTDADPH 72 (359)
Q Consensus 25 sHRsfk-a~~~l~~~l~i~~-~~a~qg~~~~Wv~~HR~HH~~sDt~~DPh 72 (359)
+|+++- .++++...+..+. .+....+-..|-+.|..||+++.+++||=
T Consensus 54 ~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~~DpD 103 (225)
T cd03513 54 MHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTAKDPD 103 (225)
T ss_pred hhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 577764 4566655555443 34334577889999999999998777764
No 36
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=30.40 E-value=33 Score=31.37 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.3
Q ss_pred hhhHHHhhcCccccCCCCCCCcchhhh
Q psy16812 124 NLFVSVASFGDGWHNYHHVFPWDYKNA 150 (359)
Q Consensus 124 ~~~~a~~t~GEgwHN~HH~fP~d~r~g 150 (359)
+.++..++.|-+.|.-||.||.-.+.-
T Consensus 161 ~~~~~~l~ggln~qieHHLfP~ip~~~ 187 (204)
T cd03506 161 SPFLDWLHGGLNYQIEHHLFPTMPRHN 187 (204)
T ss_pred CCHHHHHhcchhhHHHHhcCCCchhhh
Confidence 578999999999999999999866554
No 37
>PRK05470 fumarate reductase subunit D; Provisional
Probab=29.63 E-value=83 Score=27.45 Aligned_cols=41 Identities=22% Similarity=0.459 Sum_probs=30.4
Q ss_pred hhhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC
Q psy16812 17 TAGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD 66 (359)
Q Consensus 17 T~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD 66 (359)
...|.|..+ |-.++.-+.++..+-.+ --|.+.||.||.--|
T Consensus 48 a~sy~~i~a---Fa~s~iG~l~ll~~i~l------plWh~~HRihHglHD 88 (118)
T PRK05470 48 ALSYERVLA---FAQSFIGKLFLLLMIVL------PLWCGLHRIHHGMHD 88 (118)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 466799854 88888887776655333 469999999998544
No 38
>KOG2987|consensus
Probab=25.43 E-value=22 Score=35.20 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=32.5
Q ss_pred hhhhhhHHhhhhcccccCChHH-HHHHHHHHHH-hhchhhHHHHHHhhhhhhcCCC
Q psy16812 14 IGVTAGAHRLWSHHSYKAKWPM-RLLLAIFQTI-GIQYSILNWVRDHRLHHKYTDT 67 (359)
Q Consensus 14 ~GiT~G~HRl~sHRsfka~~~l-~~~l~i~~~~-a~qg~~~~Wv~~HR~HH~~sDt 67 (359)
-..|+..|-+----+|..++|+ -.++.++.-+ .|.-=.+..-.-|-.||+|-..
T Consensus 82 hsl~LAIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~ 137 (324)
T KOG2987|consen 82 HSLTLAIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGV 137 (324)
T ss_pred hhHHHHHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCC
Confidence 3567788887666789887774 2333333222 1111133566789999998743
No 39
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=24.34 E-value=95 Score=28.79 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=26.5
Q ss_pred hhhhhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCCCCCCCCCC
Q psy16812 15 GVTAGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTDTDADPHNS 74 (359)
Q Consensus 15 GiT~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sDt~~DPhsp 74 (359)
.+|--.|+ |||.-...+++++. |.=+|-+ -|+ +.||.||+ .||+.
T Consensus 96 ~~tnq~Hk-WsH~~~~~P~~V~~-LQ~~gil---lsr----~~H~~HH~------aPh~~ 140 (178)
T PF10520_consen 96 AFTNQFHK-WSHTYKSLPPWVRF-LQDAGIL---LSR----KHHRIHHV------APHDT 140 (178)
T ss_pred HHHHHHHH-HHcCCCCCCHHHHH-HHHCCcc---cCc----hhhhcccc------CcccC
Confidence 33444786 79987774444443 3333333 233 57999998 66665
No 40
>KOG4232|consensus
Probab=23.13 E-value=2.1e+02 Score=30.15 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=15.7
Q ss_pred CCCCcCCCCccccccccCCCccch
Q psy16812 291 WHNYHHVFPWDYKNAELWNYKFNI 314 (359)
Q Consensus 291 wHN~HH~fP~d~~~~~~~~~~~d~ 314 (359)
+||-||+.|.++.--+. -+++|
T Consensus 198 ~H~~HHa~pN~~~~DpD--i~~~P 219 (430)
T KOG4232|consen 198 HHNQHHAAPNSLDKDPD--IDFEP 219 (430)
T ss_pred HHhhhhccCccCCCCcc--ccccc
Confidence 79999999987766542 24455
No 41
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=21.28 E-value=71 Score=25.55 Aligned_cols=12 Identities=42% Similarity=0.947 Sum_probs=8.9
Q ss_pred hHHHHHHhhhhhh
Q psy16812 51 ILNWVRDHRLHHK 63 (359)
Q Consensus 51 ~~~Wv~~HR~HH~ 63 (359)
+.-| +.|+.||+
T Consensus 23 ~~l~-~~H~~HH~ 34 (114)
T PF04116_consen 23 PFLW-RIHKVHHS 34 (114)
T ss_pred chHH-HHHHHHhC
Confidence 3356 78999995
Done!