Query psy16812
Match_columns 359
No_of_seqs 196 out of 1321
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 22:44:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_D Fumarate reductase 13 k 22.4 58 0.002 27.2 3.0 40 18-66 50-89 (119)
2 2i9f_A Nucleocapsid; assembly, 11.7 62 0.0021 23.7 0.6 54 292-345 3-65 (69)
3 2hzs_I RNA polymerase II media 7.6 2.6E+02 0.0088 17.1 2.1 13 284-296 14-27 (27)
4 3qmx_A Glutaredoxin A, glutare 6.8 5.5E+02 0.019 19.2 4.4 42 295-336 6-50 (99)
5 1xmp_A PURE, phosphoribosylami 5.9 1.9E+02 0.0067 25.4 1.3 46 288-336 1-48 (170)
6 2kta_A Putative helicase; PSI, 5.6 2.4E+02 0.0083 21.2 1.6 19 314-332 50-68 (74)
7 3gv0_A Transcriptional regulat 4.8 1.6E+02 0.0053 25.8 0.0 14 283-296 275-288 (288)
8 3h8d_A Myosin-VI; myosin VI, m 4.5 95 0.0032 26.5 -1.6 20 65-84 25-44 (141)
9 2byg_A Channel associated prot 3.5 2.3E+02 0.008 22.1 0.0 10 65-74 9-18 (117)
10 3b40_A PVDM, probable dipeptid 3.2 1.2E+03 0.041 22.7 4.9 34 312-345 192-225 (417)
No 1
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=22.42 E-value=58 Score=27.23 Aligned_cols=40 Identities=23% Similarity=0.450 Sum_probs=28.5
Q ss_pred hhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC
Q psy16812 18 AGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD 66 (359)
Q Consensus 18 ~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD 66 (359)
..|.|. .+|-+++.-+.++...-. ---|.+.||.||.--|
T Consensus 50 lsY~~~---~aFa~s~ig~l~ll~~i~------lplWh~~HRihh~lHD 89 (119)
T 1kf6_D 50 LSYERV---LAFAQSFIGRVFLFLMIV------LPLWCGLHRMHHAMHD 89 (119)
T ss_dssp TSHHHH---HHHHTSHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred ccHHHH---HHHHhcHHHHHHHHHHHH------HHHHHHHHHHHHhhhh
Confidence 466776 567788877776655533 3469999999998555
No 2
>2i9f_A Nucleocapsid; assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=11.72 E-value=62 Score=23.73 Aligned_cols=54 Identities=28% Similarity=0.343 Sum_probs=33.6
Q ss_pred CCCcCCCCccccccccCCCccchhHHHHHHHH---------HhCcccccccCCHHHHHHHHhh
Q psy16812 292 HNYHHVFPWDYKNAELWNYKFNISTAFVDLCA---------LIGWAYDLKTVPTDMIQKRVAR 345 (359)
Q Consensus 292 HN~HH~fP~d~~~~~~~~~~~d~t~~~I~~l~---------~lGla~dlk~~~~~~i~~~~~~ 345 (359)
|.-||.-|.|-|......-+-..+.-+-|++- .=||.|-+..+|..+|+++++.
T Consensus 3 hhhhhhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiqrkvap 65 (69)
T 2i9f_A 3 HHHHHHEPGDLRHDLNQQERATLSSNVQRFFMIGHGSLTADAGGLTYTVSWVPTKQIQRKVAP 65 (69)
T ss_dssp ---CCCCCSSGGGGCCHHHHHHHHHHHHHHHHTTCSEEEECSSSEEEEEEECCCHHHHHHHC-
T ss_pred cccccCCCccccchhhHHHHHHHhhhhhheeeecccceeecCCCcEEEEEeeeHHHhhhhcCC
Confidence 55677789998887422112344555555552 3478899999999888887653
No 3
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=7.56 E-value=2.6e+02 Score=17.09 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=7.8
Q ss_pred HHhc-CCCCCCCcC
Q psy16812 284 VASF-GDGWHNYHH 296 (359)
Q Consensus 284 ~~t~-GEgwHN~HH 296 (359)
-+|| ||-.|.-||
T Consensus 14 kftftgekhhhhhh 27 (27)
T 2hzs_I 14 KFTFTGEKHHHHHH 27 (27)
T ss_dssp HHHHHCCCCSSCCC
T ss_pred EEEecccccccccC
Confidence 3444 887666555
No 4
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=6.78 E-value=5.5e+02 Score=19.21 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.5
Q ss_pred cCCCCccccccccCCC---ccchhHHHHHHHHHhCcccccccCCH
Q psy16812 295 HHVFPWDYKNAELWNY---KFNISTAFVDLCALIGWAYDLKTVPT 336 (359)
Q Consensus 295 HH~fP~d~~~~~~~~~---~~d~t~~~I~~l~~lGla~dlk~~~~ 336 (359)
||.+|.|......-.| .+-......++|+.+|+.+....+..
T Consensus 6 ~~~~~~~~~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~ 50 (99)
T 3qmx_A 6 HHHHHGSAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDG 50 (99)
T ss_dssp CCSSCCSCCCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTT
T ss_pred cccccCccCCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCC
Confidence 6677776554432222 47888899999999999987766553
No 5
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=5.89 E-value=1.9e+02 Score=25.40 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=24.4
Q ss_pred CCCCCCCcCCCCccccccccCCC--ccchhHHHHHHHHHhCcccccccCCH
Q psy16812 288 GDGWHNYHHVFPWDYKNAELWNY--KFNISTAFVDLCALIGWAYDLKTVPT 336 (359)
Q Consensus 288 GEgwHN~HH~fP~d~~~~~~~~~--~~d~t~~~I~~l~~lGla~dlk~~~~ 336 (359)
|...|.-||.-|. .+..-.- .++.-.-....|+.+|.-+|++..+.
T Consensus 1 ~~~~~~~~~~~~~---V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~Sa 48 (170)
T 1xmp_A 1 GSSHHHHHHMKSL---VGVIMGSTSDWETMKYACDILDELNIPYEKKVVSA 48 (170)
T ss_dssp ----------CCS---EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCccccccCCCc---EEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4456778888883 4422212 34445567899999999999987775
No 6
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=5.62 E-value=2.4e+02 Score=21.20 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHhCcccccc
Q psy16812 314 ISTAFVDLCALIGWAYDLK 332 (359)
Q Consensus 314 ~t~~~I~~l~~lGla~dlk 332 (359)
++--=|..|+.||.+|+|.
T Consensus 50 Ls~eRi~~L~~lGf~w~~~ 68 (74)
T 2kta_A 50 LPNDRRLLLDKIGFVWSLE 68 (74)
T ss_dssp CCHHHHHHHHHHTCCCCCC
T ss_pred CCHHHHHHHHHcCCEeccc
Confidence 3445589999999999885
No 7
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=4.83 E-value=1.6e+02 Score=25.81 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=0.4
Q ss_pred HHHhcCCCCCCCcC
Q psy16812 283 SVASFGDGWHNYHH 296 (359)
Q Consensus 283 ~~~t~GEgwHN~HH 296 (359)
+=..-|||||.-||
T Consensus 275 s~~~~~~~~~~~~~ 288 (288)
T 3gv0_A 275 SSMAPKEGHHHHHH 288 (288)
T ss_dssp C-------------
T ss_pred cccCCcccccccCC
Confidence 44456999998877
No 8
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=4.50 E-value=95 Score=26.49 Aligned_cols=20 Identities=30% Similarity=0.823 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCcchhHHHhh
Q psy16812 65 TDTDADPHNSTRGFFFSHIG 84 (359)
Q Consensus 65 sDt~~DPhsp~rGf~~shig 84 (359)
+|...+|.++.+|+||+|+-
T Consensus 25 ~~~~k~~~~~k~G~WYAHFd 44 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFD 44 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEE
T ss_pred cccccCCCCcccceEEEeeC
Confidence 46777888889999999973
No 9
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=3.48 E-value=2.3e+02 Score=22.09 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q psy16812 65 TDTDADPHNS 74 (359)
Q Consensus 65 sDt~~DPhsp 74 (359)
.+.+.||||-
T Consensus 9 ~~~~~dp~s~ 18 (117)
T 2byg_A 9 SGVDLGTENL 18 (117)
T ss_dssp ----------
T ss_pred CccCCCCccc
Confidence 3678999995
No 10
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=3.23 E-value=1.2e+03 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=29.3
Q ss_pred cchhHHHHHHHHHhCcccccccCCHHHHHHHHhh
Q psy16812 312 FNISTAFVDLCALIGWAYDLKTVPTDMIQKRVAR 345 (359)
Q Consensus 312 ~d~t~~~I~~l~~lGla~dlk~~~~~~i~~~~~~ 345 (359)
-+.+.-+|+-|.+||++=||..++.+.....+.-
T Consensus 192 T~~G~~vV~eMNrlGmiVDlSH~s~~t~~dvl~~ 225 (417)
T 3b40_A 192 SPLGKQAVERLNDLGVIIDVSQMSTKALEQVAAL 225 (417)
T ss_dssp CHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCEEECCCCCHHHHHHHHHh
Confidence 3789999999999999999999998887766543
Done!