Query psy16812
Match_columns 359
No_of_seqs 196 out of 1321
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 22:44:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16812.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16812hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 17.7 44 0.0032 26.0 3.3 40 18-66 50-89 (119)
2 d1k8ua_ a.39.1.2 (A:) Calcycli 5.6 62 0.0045 23.0 0.1 13 62-74 16-28 (89)
3 d2ezia_ a.4.1.2 (A:) Transposa 3.7 1.9E+02 0.014 19.7 1.5 33 318-354 35-67 (75)
4 d3cr5x1 a.39.1.2 (X:0-89) Calc 3.7 1.2E+02 0.0088 21.7 0.4 15 61-75 15-29 (90)
5 d1xk4c1 a.39.1.2 (C:4-86) Calc 3.5 1.3E+02 0.0094 21.2 0.4 15 61-75 16-30 (83)
6 d1ksoa_ a.39.1.2 (A:) Calcycli 3.4 1.3E+02 0.0097 21.3 0.4 14 61-74 15-28 (93)
7 d2epra1 g.37.1.1 (A:350-384) P 3.4 2.6E+02 0.019 16.7 1.7 16 58-73 20-35 (35)
8 d2i9fa1 d.254.1.1 (A:50-105) A 2.9 1.7E+02 0.013 18.9 0.5 18 326-343 38-55 (56)
9 d1g47a1 g.39.1.3 (A:1-35) Pinc 2.9 2.1E+02 0.016 17.3 0.9 28 258-292 2-32 (35)
10 d1ofcx1 a.4.1.3 (X:799-850) SA 2.8 4.9E+02 0.036 16.7 2.9 25 317-341 9-39 (52)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=17.69 E-value=44 Score=25.98 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=29.3
Q ss_pred hhHHhhhhcccccCChHHHHHHHHHHHHhhchhhHHHHHHhhhhhhcCC
Q psy16812 18 AGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKYTD 66 (359)
Q Consensus 18 ~G~HRl~sHRsfka~~~l~~~l~i~~~~a~qg~~~~Wv~~HR~HH~~sD 66 (359)
..|+|.. +|-.++.-+.++..+-. .--|.+.||.||.--|
T Consensus 50 ~~y~~i~---aFa~s~iG~l~ll~~i~------lplWh~~HRihHglHD 89 (119)
T d1kf6d_ 50 LSYERVL---AFAQSFIGRVFLFLMIV------LPLWCGLHRMHHAMHD 89 (119)
T ss_dssp TSHHHHH---HHHTSHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred cCHHHHH---HHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHhh
Confidence 6778884 57788887777666533 3469999999997555
No 2
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=5.61 E-value=62 Score=23.04 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=11.0
Q ss_pred hhcCCCCCCCCCC
Q psy16812 62 HKYTDTDADPHNS 74 (359)
Q Consensus 62 H~~sDt~~DPhsp 74 (359)
|+|+|+++|...-
T Consensus 16 ~kya~~dg~~~~l 28 (89)
T d1k8ua_ 16 HKYSGREGDKHTL 28 (89)
T ss_dssp HHHHTSSSCTTEE
T ss_pred HHHcccCCCCCee
Confidence 7999999998753
No 3
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Probab=3.73 E-value=1.9e+02 Score=19.69 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=21.5
Q ss_pred HHHHHHHhCcccccccCCHHHHHHHHhhcCCCCcccC
Q psy16812 318 FVDLCALIGWAYDLKTVPTDMIQKRVARTGMFTNVKK 354 (359)
Q Consensus 318 ~I~~l~~lGla~dlk~~~~~~i~~~~~~~~~~~~~~~ 354 (359)
+.+.|+.-|| +.||...+.+|+..........+
T Consensus 35 i~~~c~~~gl----~~PS~~T~~rri~~l~~~~~~~~ 67 (75)
T d2ezia_ 35 LELAAREHGW----SIPSRATAFRRIQQLDEAMVVAC 67 (75)
T ss_dssp HHHHHHHHTC----CCCCHHHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHcCC----CCCCHHHHHHHHHhCCHHHHHHH
Confidence 4566777775 67888888888865544333333
No 4
>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}
Probab=3.66 E-value=1.2e+02 Score=21.66 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=12.1
Q ss_pred hhhcCCCCCCCCCCC
Q psy16812 61 HHKYTDTDADPHNST 75 (359)
Q Consensus 61 HH~~sDt~~DPhsp~ 75 (359)
=|+|+++++|++.-.
T Consensus 15 FhkYa~~~G~~~tLs 29 (90)
T d3cr5x1 15 FHQYSGREGDKHKLK 29 (90)
T ss_dssp HHHHHTSSSSTTSBC
T ss_pred HHHHhccCCCcCcCC
Confidence 489999999987653
No 5
>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}
Probab=3.50 E-value=1.3e+02 Score=21.22 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=12.6
Q ss_pred hhhcCCCCCCCCCCC
Q psy16812 61 HHKYTDTDADPHNST 75 (359)
Q Consensus 61 HH~~sDt~~DPhsp~ 75 (359)
=|+||.+++|++.=.
T Consensus 16 FhkYa~~~G~~~tLs 30 (83)
T d1xk4c1 16 FHQYSVKLGHPDTLN 30 (83)
T ss_dssp HHHHHTTSSSTTSBC
T ss_pred HHHHhCcCCCcccCC
Confidence 389999999998864
No 6
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=3.43 E-value=1.3e+02 Score=21.29 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=11.2
Q ss_pred hhhcCCCCCCCCCC
Q psy16812 61 HHKYTDTDADPHNS 74 (359)
Q Consensus 61 HH~~sDt~~DPhsp 74 (359)
=|+|+|+++|.+.-
T Consensus 15 F~kya~~dGd~~~l 28 (93)
T d1ksoa_ 15 FQEYAGRCGDKYKL 28 (93)
T ss_dssp HHHHHTSSSCTTCE
T ss_pred HHHHcCcCCCCCeE
Confidence 38899999998754
No 7
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.40 E-value=2.6e+02 Score=16.69 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=12.0
Q ss_pred hhhhhhcCCCCCCCCC
Q psy16812 58 HRLHHKYTDTDADPHN 73 (359)
Q Consensus 58 HR~HH~~sDt~~DPhs 73 (359)
|-..|+-|.+++-|++
T Consensus 20 hlnrhklshs~ekpys 35 (35)
T d2epra1 20 HLNRHKLSHSGEKPYS 35 (35)
T ss_dssp HHHHHGGGSCSCCCCC
T ss_pred HHHhhhcccCCCCCCC
Confidence 5566888888888875
No 8
>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein {Equine arteritis virus [TaxId: 11047]}
Probab=2.90 E-value=1.7e+02 Score=18.87 Aligned_cols=18 Identities=44% Similarity=0.763 Sum_probs=12.2
Q ss_pred CcccccccCCHHHHHHHH
Q psy16812 326 GWAYDLKTVPTDMIQKRV 343 (359)
Q Consensus 326 Gla~dlk~~~~~~i~~~~ 343 (359)
||.|-+.-+|..+|++++
T Consensus 38 gltytvswvptkqiqrkv 55 (56)
T d2i9fa1 38 GLTYTVSWVPTKQIQRKV 55 (56)
T ss_dssp SEEEEEEECCCHHHHHHH
T ss_pred CcEEEEEeeEHHHhhhhc
Confidence 667777777777666654
No 9
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.86 E-value=2.1e+02 Score=17.27 Aligned_cols=28 Identities=14% Similarity=0.206 Sum_probs=15.4
Q ss_pred ccccccccCCC---CCCCCCCCCchhhHHHHhcCCCCC
Q psy16812 258 INSVAHMWGNK---PYDKNINPTENLFVSVASFGDGWH 292 (359)
Q Consensus 258 VNS~~H~~G~r---py~~~~~s~n~~~~~~~t~GEgwH 292 (359)
.||++.+-=+| -|+...+-.|+. ||-||
T Consensus 2 ~~sL~~~~C~RC~~gF~p~EkiVNSn-------GEl~H 32 (35)
T d1g47a1 2 ANALASATCERCKGGFAPAEKIVNSN-------GELYH 32 (35)
T ss_dssp CSCCCCCBCSSSCCBCCSTTTCEEET-------TEEEC
T ss_pred chHHHHHHHHHHccCCCchHHhhcCC-------Ccccc
Confidence 36677664332 355555555543 77777
No 10
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.82 E-value=4.9e+02 Score=16.68 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHhC------cccccccCCHHHHHH
Q psy16812 317 AFVDLCALIG------WAYDLKTVPTDMIQK 341 (359)
Q Consensus 317 ~~I~~l~~lG------la~dlk~~~~~~i~~ 341 (359)
.||+++++-| +|.++..-+++.|++
T Consensus 9 ~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~ 39 (52)
T d1ofcx1 9 QFIKANEKYGRDDIDNIAKDVEGKTPEEVIE 39 (52)
T ss_dssp HHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence 5899999998 466665445555553
Done!