RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16812
         (359 letters)



>g2ai4.1 b.6.1.7 (A:6-116,B:117-124) Hypothetical protein SO1698
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 119

 Score = 26.7 bits (59), Expect = 2.2
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 65  TDTDADPHNSTRGFFFSHIGWSLIL--PHPEVTEK 97
            D D  P  +   F  S+   +L++  P P++  +
Sbjct: 83  VDLDKTPGTTKFQFVLSNTANTLLVLSPDPQIINR 117


>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
           beige-like anchor protein LRBA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 304

 Score = 27.7 bits (61), Expect = 2.4
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 131 SFGDGWHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALIGWAYDLKTVPTDMIQKRVAR 190
           S+ D   N + VFPW   N E       + T F DL   IG A + K        +R   
Sbjct: 51  SYND--LNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIG-ALNPKRA--AFFAERYES 105

Query: 191 TGDGSHHHHHDG 202
             D      H G
Sbjct: 106 WEDDQVPKFHYG 117


>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
          subunit {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 227

 Score = 26.4 bits (57), Expect = 5.4
 Identities = 4/47 (8%), Positives = 11/47 (23%)

Query: 18 AGAHRLWSHHSYKAKWPMRLLLAIFQTIGIQYSILNWVRDHRLHHKY 64
           G H++W+   +  + P   + +                        
Sbjct: 37 VGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESL 83


>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces
           lavendulae [TaxId: 1914]}
          Length = 145

 Score = 25.8 bits (56), Expect = 5.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 172 WAYDLKTVPTDM---IQKRVART--GDGSHHHHH 200
           WA    T+  ++   I  RV R   G   HHHHH
Sbjct: 112 WAQAAHTIAYEIVTRIGGRVPRVYLGGLEHHHHH 145


>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 108

 Score = 25.2 bits (55), Expect = 6.1
 Identities = 4/18 (22%), Positives = 8/18 (44%)

Query: 163 FVDLCALIGWAYDLKTVP 180
            +D+   +G  Y+   V 
Sbjct: 6   LIDIAIFMGTDYNPGGVK 23



 Score = 25.2 bits (55), Expect = 6.1
 Identities = 4/18 (22%), Positives = 8/18 (44%)

Query: 318 FVDLCALIGWAYDLKTVP 335
            +D+   +G  Y+   V 
Sbjct: 6   LIDIAIFMGTDYNPGGVK 23


>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
           subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
           2285]}
          Length = 146

 Score = 25.1 bits (54), Expect = 8.3
 Identities = 11/84 (13%), Positives = 20/84 (23%), Gaps = 1/84 (1%)

Query: 116 YKNINPTENLFVSVASFGDG-WHNYHHVFPWDYKNAELWNYKFNISTAFVDLCALIGWAY 174
           ++    T   F        G    +           E       +   + D   +     
Sbjct: 46  FEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYD 105

Query: 175 DLKTVPTDMIQKRVARTGDGSHHH 198
                 +++    V   GDG H H
Sbjct: 106 GASRFASEISDIPVINAGDGKHEH 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.482 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,544,287
Number of extensions: 74988
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 47
Length of query: 359
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,226,816
Effective search space: 334920768
Effective search space used: 334920768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)