BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16814
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94690|RTC6_SCHPO 54S ribosomal protein c83.06c, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC83.06c PE=3 SV=2
Length = 92
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 37 EFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKP 96
F +PS+LP+ +K KA VKKRC CYF+ ++G L+ LC P
Sbjct: 39 AFRLSPSLLPWN-------------FSRGFKVKASVKKRCSSCYFVRRKGRLYVLCKKHP 85
Query: 97 KHK 99
+HK
Sbjct: 86 RHK 88
>sp|C1BJQ3|RM36_OSMMO 39S ribosomal protein L36, mitochondrial OS=Osmerus mordax
GN=mrpl36 PE=2 SV=1
Length = 120
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 41 APSILPYEQINLLQPI--LPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKH 98
AP+ P ++ +LL L + K K+ +K+RCK C+++ + G L C P+H
Sbjct: 56 APATFPQDRGSLLGQCQHLACLQPCAGMKTKSSLKRRCKNCFYVRRRGRLFVFCKTHPRH 115
Query: 99 KQ 100
KQ
Sbjct: 116 KQ 117
>sp|P61114|RL36_PSESM 50S ribosomal protein L36 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rpmJ PE=3 SV=1
Length = 38
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EGV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRREGVVRVICSAEPRHKQ 35
>sp|B1JAJ1|RL36_PSEPW 50S ribosomal protein L36 OS=Pseudomonas putida (strain W619)
GN=rpmJ PE=3 SV=1
Length = 38
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EGV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRREGVVRVICSAEPRHKQ 35
>sp|P61113|RL36_PSEPK 50S ribosomal protein L36 OS=Pseudomonas putida (strain KT2440)
GN=rpmJ PE=3 SV=1
Length = 38
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EGV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRREGVVRVICSAEPRHKQ 35
>sp|A5VXR8|RL36_PSEP1 50S ribosomal protein L36 OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=rpmJ PE=3 SV=2
Length = 38
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EGV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRREGVVRVICSAEPRHKQ 35
>sp|A4XZ69|RL36_PSEMY 50S ribosomal protein L36 OS=Pseudomonas mendocina (strain ymp)
GN=rpmJ PE=3 SV=1
Length = 38
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EGV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRREGVVRVICSAEPRHKQ 35
>sp|C3K2V5|RL36_PSEFS 50S ribosomal protein L36 OS=Pseudomonas fluorescens (strain SBW25)
GN=rpmJ PE=3 SV=1
Length = 38
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EGV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRREGVVRVICSAEPRHKQ 35
>sp|Q48D57|RL36_PSE14 50S ribosomal protein L36 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=rpmJ PE=3 SV=1
Length = 38
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EGV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRREGVVRVICSAEPRHKQ 35
>sp|Q99N90|RM36_MOUSE 39S ribosomal protein L36, mitochondrial OS=Mus musculus GN=Mrpl36
PE=2 SV=1
Length = 102
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 35 LQEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHL 94
L P+A + +P LP+++ +K K +KKRCK CY + + G LC
Sbjct: 35 LGTLPRAKPCAEVRSVLCGRP-LPTLLPSLGFKTKGVIKKRCKDCYKVKRRGRWFILCKT 93
Query: 95 KPKHKQ 100
PKHKQ
Sbjct: 94 NPKHKQ 99
>sp|A4WFA7|RL361_ENT38 50S ribosomal protein L36 1 OS=Enterobacter sp. (strain 638)
GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EGV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKREGVIRVICSAEPKHKQ 35
>sp|Q1IFU5|RL36_PSEE4 50S ribosomal protein L36 OS=Pseudomonas entomophila (strain L48)
GN=rpmJ PE=3 SV=1
Length = 38
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + +EG++ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRREGIVRVICSAEPRHKQ 35
>sp|B2RZ39|RM36_RAT 39S ribosomal protein L36, mitochondrial OS=Rattus norvegicus
GN=Mrpl36 PE=3 SV=1
Length = 97
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 42 PSILPYEQINLLQPILPSVMLVNTWKYKAK--VKKRCKGCYFLYKEGVLHNLCHLKPKHK 99
PS P ++ L P + L + +K K +KKRC+ CY + + G LC PKHK
Sbjct: 34 PSAKPCAEVRSLLCGGPVLSLQPSLGFKTKGVIKKRCRDCYMVKRRGRWFVLCKTNPKHK 93
Query: 100 Q 100
Q
Sbjct: 94 Q 94
>sp|A4VHQ1|RL36_PSEU5 50S ribosomal protein L36 OS=Pseudomonas stutzeri (strain A1501)
GN=rpmJ PE=3 SV=1
Length = 38
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRRDGVVRVICSAEPRHKQ 35
>sp|Q9P0J6|RM36_HUMAN 39S ribosomal protein L36, mitochondrial OS=Homo sapiens GN=MRPL36
PE=2 SV=1
Length = 103
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 51 NLLQP-ILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
+LL P +LP ++ +K K +KKRCK CY + + G + C P+HKQ
Sbjct: 50 SLLSPGLLPHLLPALGFKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQ 100
>sp|C1DKN4|RL36_AZOVD 50S ribosomal protein L36 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rpmJ PE=3 SV=1
Length = 38
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRRDGVVRVICSTEPRHKQ 35
>sp|B3PK58|RL36_CELJU 50S ribosomal protein L36 OS=Cellvibrio japonicus (strain Ueda107)
GN=rpmJ PE=3 SV=1
Length = 38
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + + GVL +C ++P+HKQ
Sbjct: 2 KVRASVKKICRNCKMVRRNGVLRVICSVEPRHKQ 35
>sp|Q3YWW0|RL36_SHISS 50S ribosomal protein L36 OS=Shigella sonnei (strain Ss046) GN=rpmJ
PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|P0A7R0|RL36_SHIFL 50S ribosomal protein L36 OS=Shigella flexneri GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|Q0T003|RL36_SHIF8 50S ribosomal protein L36 OS=Shigella flexneri serotype 5b (strain
8401) GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|Q32B52|RL36_SHIDS 50S ribosomal protein L36 OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|Q31VX7|RL36_SHIBS 50S ribosomal protein L36 OS=Shigella boydii serotype 4 (strain
Sb227) GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|P0A7Q8|RL36_SALTY 50S ribosomal protein L36 OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|P0A7Q9|RL36_SALTI 50S ribosomal protein L36 OS=Salmonella typhi GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|P0A7Q6|RL36_ECOLI 50S ribosomal protein L36 OS=Escherichia coli (strain K12) GN=rpmJ
PE=1 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|C4ZUF4|RL36_ECOBW 50S ribosomal protein L36 OS=Escherichia coli (strain K12 / MC4100
/ BW2952) GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|P0A7Q7|RL36_ECO57 50S ribosomal protein L36 OS=Escherichia coli O157:H7 GN=rpmJ PE=3
SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|Q5PK05|RL361_SALPA 50S ribosomal protein L36 1 OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|Q57J53|RL361_SALCH 50S ribosomal protein L36 1 OS=Salmonella choleraesuis (strain
SC-B67) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|Q1R632|RL361_ECOUT 50S ribosomal protein L36 1 OS=Escherichia coli (strain UTI89 /
UPEC) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|B1LHB3|RL361_ECOSM 50S ribosomal protein L36 1 OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|B1IQ00|RL361_ECOLC 50S ribosomal protein L36 1 OS=Escherichia coli (strain ATCC 8739 /
DSM 1576 / Crooks) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|Q0TCG2|RL361_ECOL5 50S ribosomal protein L36 1 OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|A8A5A4|RL361_ECOHS 50S ribosomal protein L36 1 OS=Escherichia coli O9:H4 (strain HS)
GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|B1X6F1|RL361_ECODH 50S ribosomal protein L36 1 OS=Escherichia coli (strain K12 /
DH10B) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|A7ZSI8|RL361_ECO24 50S ribosomal protein L36 1 OS=Escherichia coli O139:H28 (strain
E24377A / ETEC) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|A7MPF5|RL361_CROS8 50S ribosomal protein L36 1 OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35
>sp|Q2S933|RL36_HAHCH 50S ribosomal protein L36 OS=Hahella chejuensis (strain KCTC 2396)
GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+GC + + G + +C +P+HKQ
Sbjct: 2 KVRASVKKMCRGCKIIRRNGAVMVICSTEPRHKQ 35
>sp|Q21M37|RL36_SACD2 50S ribosomal protein L36 OS=Saccharophagus degradans (strain 2-40
/ ATCC 43961 / DSM 17024) GN=rpmJ PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A +KK C+ C + ++GVL +C +P+HKQ
Sbjct: 2 KVRASIKKMCRNCKLVRRKGVLRVICSAEPRHKQ 35
>sp|Q9HWF6|RL36_PSEAE 50S ribosomal protein L36 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpmJ PE=3
SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++G++ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRRDGIVRVICSAEPRHKQ 35
>sp|Q02T59|RL361_PSEAB 50S ribosomal protein L36 1 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++G++ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRRDGIVRVICSAEPRHKQ 35
>sp|A6UZK9|RL361_PSEA7 50S ribosomal protein L36 1 OS=Pseudomonas aeruginosa (strain PA7)
GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + ++G++ +C +P+HKQ
Sbjct: 2 KVRASVKKLCRNCKIIRRDGIVRVICSAEPRHKQ 35
>sp|A5USG6|RL36_ROSS1 50S ribosomal protein L36 OS=Roseiflexus sp. (strain RS-1) GN=rpmJ
PE=3 SV=1
Length = 38
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VK RC+ C + ++GVL +C +PKHKQ
Sbjct: 2 KVRASVKPRCEYCRVIKRKGVLRVICSRQPKHKQ 35
>sp|Q1LWG3|RM36_DANRE 39S ribosomal protein L36, mitochondrial OS=Danio rerio GN=mrpl36
PE=3 SV=1
Length = 116
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K K+ +KKRC C+F+ + G L C P+HKQ
Sbjct: 80 KTKSALKKRCNECFFVRRRGRLFVFCKAHPRHKQ 113
>sp|A7NR40|RL36_ROSCS 50S ribosomal protein L36 OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=rpmJ PE=3 SV=1
Length = 38
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VK RC+ C + ++GVL +C +PKHKQ
Sbjct: 2 KVQASVKPRCEYCRVIKRKGVLRVICSRQPKHKQ 35
>sp|B2K516|RL362_YERPB 50S ribosomal protein L36 2 OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=rpmJ2 PE=3 SV=1
Length = 38
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + + GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRNGVVRVICSAEPKHKQ 35
>sp|A1JS06|RL362_YERE8 50S ribosomal protein L36 2 OS=Yersinia enterocolitica serotype O:8
/ biotype 1B (strain 8081) GN=rpmJ2 PE=3 SV=1
Length = 38
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + + GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRNGVVRVICSAEPKHKQ 35
>sp|Q2NQP3|RL362_SODGM 50S ribosomal protein L36 2 OS=Sodalis glossinidius (strain
morsitans) GN=rpmJ2 PE=3 SV=1
Length = 38
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + + GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRNGVVRVICSAEPKHKQ 35
>sp|B1JIY2|RL361_YERPY 50S ribosomal protein L36 1 OS=Yersinia pseudotuberculosis serotype
O:3 (strain YPIII) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + + GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRNGVVRVICSAEPKHKQ 35
>sp|Q664U2|RL361_YERPS 50S ribosomal protein L36 1 OS=Yersinia pseudotuberculosis serotype
I (strain IP32953) GN=rpmJ1 PE=3 SV=1
Length = 38
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
K +A VKK C+ C + + GV+ +C +PKHKQ
Sbjct: 2 KVRASVKKLCRNCKIVKRNGVVRVICSAEPKHKQ 35
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,966,934
Number of Sequences: 539616
Number of extensions: 1822896
Number of successful extensions: 3654
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 3482
Number of HSP's gapped (non-prelim): 306
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)