Query psy16814
Match_columns 124
No_of_seqs 133 out of 563
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 22:47:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_4 50S ribosomal protein L 99.9 1.1E-24 3.7E-29 134.6 4.1 38 66-103 1-38 (38)
2 2zjr_4 50S ribosomal protein L 99.9 1.5E-23 5.2E-28 128.8 2.3 37 66-103 1-37 (37)
3 3bbo_6 Ribosomal protein L36; 99.9 1.1E-23 3.8E-28 153.2 2.0 47 66-119 1-47 (104)
4 1rki_A Hypothetical protein; s 19.8 69 0.0024 22.9 2.6 19 73-91 77-95 (102)
5 2qtx_A Uncharacterized protein 14.6 2E+02 0.0068 19.0 3.7 34 60-93 30-63 (71)
6 2jq5_A SEC-C motif; structural 14.5 88 0.003 22.4 2.1 35 58-92 88-123 (128)
7 3j21_V 50S ribosomal protein L 12.8 26 0.0009 23.0 -1.0 34 80-113 21-54 (66)
8 3ahu_A Protein HFQ; SM-like mo 12.4 1.5E+02 0.0052 19.8 2.7 34 60-93 28-61 (78)
9 1kq1_A HFQ, HOST factor for Q 12.3 2.5E+02 0.0085 18.6 3.7 34 60-93 24-57 (77)
10 3fka_A Uncharacterized NTF-2 l 12.2 1.2E+02 0.004 20.2 2.0 12 82-93 104-115 (120)
No 1
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=99.90 E-value=1.1e-24 Score=134.59 Aligned_cols=38 Identities=39% Similarity=0.726 Sum_probs=37.6
Q ss_pred ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814 66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF 103 (124)
Q Consensus 66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg 103 (124)
|||++|||++|++|++|||+|++||||++|||||||||
T Consensus 1 MKVr~Svk~~c~~C~vvrR~grv~Vick~nPrhKqRQG 38 (38)
T 3r8s_4 1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 (38)
T ss_dssp CEECSCCCCCSTTEEEEEETTEEEEEETTCGGGCEECC
T ss_pred CccchhhhhhccCCeEEEECCEEEEEeCCCCchhhcCC
Confidence 99999999999999999999999999999999999997
No 2
>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...
Probab=99.87 E-value=1.5e-23 Score=128.76 Aligned_cols=37 Identities=32% Similarity=0.536 Sum_probs=36.5
Q ss_pred ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814 66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF 103 (124)
Q Consensus 66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg 103 (124)
|||++|||++|++|++|||+||+||||+ |||||||||
T Consensus 1 MKVr~slk~~c~~C~vvrR~grv~Vick-nPrhKqrQg 37 (37)
T 2zjr_4 1 MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37 (37)
T ss_dssp CEECSSCCCCSTTCCCEECSSCEEECCS-SSTTCEECC
T ss_pred CccchhHHHhhcCCEEEEECCEEEEECC-CCcccccCC
Confidence 9999999999999999999999999999 999999997
No 3
>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.87 E-value=1.1e-23 Score=153.20 Aligned_cols=47 Identities=30% Similarity=0.351 Sum_probs=37.6
Q ss_pred ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccCCCCCCceeEEeeeecC
Q psy16814 66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTN 119 (124)
Q Consensus 66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg~k~~~~twilt~atq~ 119 (124)
||||+|||++|++|++|||+||||||||+||||||||| |++|.|+|+
T Consensus 1 MKVRaSlKk~C~~CkvVRRkGRvyVICK~NPRHKQRQG-------~~~T~a~~~ 47 (104)
T 3bbo_6 1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQG-------GFSSFAYEG 47 (104)
T ss_dssp CBCCSCCCCCSTTBCCEEETTEEEBCBSSCGGGCBCCC----------------
T ss_pred CccchhhHHhhccCeEEEECCEEEEEcCCCcchhhhcc-------ceeeeeccC
Confidence 99999999999999999999999999999999999998 899999998
No 4
>1rki_A Hypothetical protein; structural genomics, (beta-alpha-beta)X2, beta-loop-beta-BET motif, unknown function; HET: P6G PG4; 1.60A {Pyrobaculum aerophilum} SCOP: d.308.1.2
Probab=19.75 E-value=69 Score=22.91 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.6
Q ss_pred eccCCCceEEEeCCEEEEE
Q psy16814 73 KKRCKGCYFLYKEGVLHNL 91 (124)
Q Consensus 73 KkrC~~C~vVRR~gRlyVi 91 (124)
+.-|.+|.+++-.|+.||-
T Consensus 77 ~Psc~~crvv~iG~~yFv~ 95 (102)
T 1rki_A 77 KPNCDKCLIVEIGGVYFVR 95 (102)
T ss_dssp CCCCSSEEEEEETTEEEEE
T ss_pred CCCCCceEEEEEcCEEEEE
Confidence 4559999999999999985
No 5
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=14.61 E-value=2e+02 Score=18.96 Aligned_cols=34 Identities=12% Similarity=-0.078 Sum_probs=29.4
Q ss_pred ccccccceEecceeccCCCceEEEeCCEEEEEcC
Q psy16814 60 VMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCH 93 (124)
Q Consensus 60 ~~~~~gMKVrsSlKkrC~~C~vVRR~gRlyViCk 93 (124)
+-...|.++++.|+.....|.++.++|+--.|-|
T Consensus 30 v~L~NG~~l~G~I~~fD~ftVll~~~g~qqliYK 63 (71)
T 2qtx_A 30 IFLRNGEVLDAEVTGVSNYEIMVKVGDRNLLVFK 63 (71)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEETTEEEEEEG
T ss_pred EEEeCCeEEEEEEEEEcceEEEEEeCCceEEEEe
Confidence 4456899999999999999999999998766655
No 6
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=14.46 E-value=88 Score=22.37 Aligned_cols=35 Identities=9% Similarity=0.027 Sum_probs=26.7
Q ss_pred ccccccccceEecce-eccCCCceEEEeCCEEEEEc
Q psy16814 58 PSVMLVNTWKYKAKV-KKRCKGCYFLYKEGVLHNLC 92 (124)
Q Consensus 58 p~~~~~~gMKVrsSl-KkrC~~C~vVRR~gRlyViC 92 (124)
..+...+-++..... ....+...|+|.+|+||-+-
T Consensus 88 g~VeF~A~y~~~g~~~~~~hE~SrF~r~~g~W~YvD 123 (128)
T 2jq5_A 88 GTVEFIARFRRGGGPEQSHHERSQFRKARGRWYFSE 123 (128)
T ss_dssp EEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEEeCCCceeEEEEeeeEEEECCEEEEeC
Confidence 456666667666666 66789999999999998763
No 7
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=12.80 E-value=26 Score=22.98 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=21.3
Q ss_pred eEEEeCCEEEEEcCCCCCcccccCCCCCCceeEE
Q psy16814 80 YFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWIL 113 (124)
Q Consensus 80 ~vVRR~gRlyViCk~nPRHKQRQg~k~~~~twil 113 (124)
.+||.||+++..|...=..--.++++.-+-.|+.
T Consensus 21 ~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~ 54 (66)
T 3j21_V 21 MYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTK 54 (66)
T ss_dssp EEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSH
T ss_pred EEEecCCcEEEEECHHHHHHHHcCCCcccchHHH
Confidence 5799999999999632222223455555566653
No 8
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=12.40 E-value=1.5e+02 Score=19.83 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=29.1
Q ss_pred ccccccceEecceeccCCCceEEEeCCEEEEEcC
Q psy16814 60 VMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCH 93 (124)
Q Consensus 60 ~~~~~gMKVrsSlKkrC~~C~vVRR~gRlyViCk 93 (124)
+-...|.++++.|+.....|.+++++|+--.|-|
T Consensus 28 v~L~nG~~l~G~I~~fD~f~VlL~~~g~qqlIYK 61 (78)
T 3ahu_A 28 VFLLNGFQLRGQVKGFDNFTVLLESEGKQQLIYK 61 (78)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEESSSCEEEEEG
T ss_pred EEEeCCeEEEEEEEEEcceEEEEEECCeeEEEEc
Confidence 4456899999999999999999999998766655
No 9
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=12.34 E-value=2.5e+02 Score=18.56 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred ccccccceEecceeccCCCceEEEeCCEEEEEcC
Q psy16814 60 VMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCH 93 (124)
Q Consensus 60 ~~~~~gMKVrsSlKkrC~~C~vVRR~gRlyViCk 93 (124)
+-...|.++++.|+-....|.++.++|+--.|-|
T Consensus 24 I~L~nG~~l~G~I~~fD~f~VlL~~~g~~qLIYK 57 (77)
T 1kq1_A 24 VFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYK 57 (77)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEETTEEEEEEG
T ss_pred EEEeCCCEEEEEEEEECCcEEEEEECCeeEEEEe
Confidence 4467899999999999999999999998766655
No 10
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=12.16 E-value=1.2e+02 Score=20.17 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=11.3
Q ss_pred EEeCCEEEEEcC
Q psy16814 82 LYKEGVLHNLCH 93 (124)
Q Consensus 82 VRR~gRlyViCk 93 (124)
+|++|+|-|++|
T Consensus 104 ~k~dg~WkIv~K 115 (120)
T 3fka_A 104 LLHEGSWRIVSK 115 (120)
T ss_dssp EEETTEEEEEEE
T ss_pred EEeCCEEEEEEE
Confidence 899999999987
Done!