RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16814
         (124 letters)



>gnl|CDD|201231 pfam00444, Ribosomal_L36, Ribosomal protein L36. 
          Length = 38

 Score = 42.5 bits (101), Expect = 7e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K ++ VKKRCK C  + ++G ++ +C   P+HKQ
Sbjct: 2   KVRSSVKKRCKDCKIVRRKGRVYVICKTNPRHKQ 35


>gnl|CDD|223335 COG0257, RpmJ, Ribosomal protein L36 [Translation, ribosomal
           structure and biogenesis].
          Length = 38

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K +A VKKRC+ C  + ++G ++ +C   PKHKQ
Sbjct: 2   KVRASVKKRCRDCKIVRRKGRVYVICKKNPKHKQ 35


>gnl|CDD|179039 PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed.
          Length = 37

 Score = 31.8 bits (73), Expect = 0.008
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K +A VKK C+ C  + ++GV+  +C   PKHKQ
Sbjct: 2   KVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQ 34


>gnl|CDD|130094 TIGR01022, rpmJ_bact, ribosomal protein L36, bacterial type.
           Proteins found by this model occur exclusively in
           bacteria and organelles [Protein synthesis, Ribosomal
           proteins: synthesis and modification].
          Length = 37

 Score = 30.9 bits (70), Expect = 0.020
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K +A VKK C+ C  + ++GV+  +C   PKHKQ
Sbjct: 2   KVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQ 34


>gnl|CDD|212745 cd11811, SH3_CHK, Src Homology 3 domain of CSK homologous kinase.
           CHK is also referred to as megakaryocyte-associated
           tyrosine kinase (Matk). It inhibits Src kinases using a
           noncatalytic mechanism by simply binding to them. As a
           negative regulator of Src kinases, Chk may play
           important roles in cell proliferation, survival, and
           differentiation, and consequently, in cancer development
           and progression. To inhibit Src kinases that are
           anchored to the plasma membrane, CHK is translocated to
           the membrane via binding to specific transmembrane
           proteins, G-proteins, or adaptor proteins near the
           membrane. CHK also plays a role in neural
           differentiation in a manner independent of Src by
           enhancing MAPK activation via Ras-mediated signaling. It
           is a cytoplasmic (or nonreceptor) tyr kinase containing
           the Src homology domains, SH3 and SH2, N-terminal to the
           catalytic tyr kinase domain. SH3 domains are protein
           interaction domains that bind to proline-rich ligands
           with moderate affinity and selectivity, preferentially
           to PxxP motifs. They play versatile and diverse roles in
           the cell including the regulation of enzymes, changing
           the subcellular localization of signaling pathway
           components, and mediating the formation of multiprotein
           complex assemblies.
          Length = 59

 Score = 26.3 bits (58), Expect = 1.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 93  HLKPKHKQILFHPKDKNTWILSGVSTNKSREW 124
           H KPK  ++ FH  D    I++ V T + + W
Sbjct: 10  HTKPKPGELAFHKGD----IVTIVETCERKGW 37


>gnl|CDD|236581 PRK09598, PRK09598, lipid A phosphoethanolamine transferase;
           Reviewed.
          Length = 522

 Score = 26.7 bits (59), Expect = 3.4
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 63  VNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWIL 113
           V ++    ++ ++C  C   Y E +L+NL       + I     +    IL
Sbjct: 320 VTSYLKNYELIQKCPNCEAPYDESLLYNL------PELIKASSNENVLLIL 364


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,045,273
Number of extensions: 502766
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 20
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)