RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16814
         (124 letters)



>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
          Length = 104

 Score = 47.8 bits (113), Expect = 2e-08
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K ++ VKK C+ C  + + G ++ +C   PKHKQ
Sbjct: 2   KVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQ 35


>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA,
           transfer RNA, 23S ribosomal subunit, ribosome recycling
           factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
           1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4
           2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4
           2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
          Length = 38

 Score = 41.7 bits (98), Expect = 8e-07
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K +A VKK C+ C  + ++GV+  +C  +PKHKQ
Sbjct: 2   KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35


>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit,
           ribonucleoprotein, RNA-binding, rRNA-binding,
           tRNA-binding, methylation; 2.91A {Deinococcus
           radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4*
           2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4*
           1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6
           1vou_6 1vow_6 ...
          Length = 37

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K ++ VKK C  C  + + G +  +C    KHKQ
Sbjct: 2   KVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQ 34


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 1.6
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 23/80 (28%)

Query: 1   MNKIF--------KIFQSTLVINNVQRTFTTL-----YKPIFVKNNP--------LQEF- 38
              +F        KI   +   N       TL     YKP    N+P        + +F 
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 39  PK-APSILPYEQINLLQPIL 57
           PK   +++  +  +LL+  L
Sbjct: 553 PKIEENLICSKYTDLLRIAL 572


>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein,
          hormone/growth factor complex; NMR {Marsupenaeus
          japonicus} SCOP: a.163.1.1
          Length = 78

 Score = 25.7 bits (56), Expect = 2.0
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 70 AKVKKRCKGCYFLYKEGVLHNLC 92
           KV + C+ C  +++   L  +C
Sbjct: 19 KKVVRVCEDCTNIFRLPGLDGMC 41


>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
           1; immunoglobulin-like fold, immune system; 1.85A {Homo
           sapiens}
          Length = 196

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 11/52 (21%)

Query: 75  RCKGC-----YFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTNKS 121
           RC+G      Y L KEG        +P   Q    PK+K  + +  ++ + +
Sbjct: 25  RCQGTLEAQEYRLVKEG------SPEPWDTQNPLEPKNKARFSIPSMTEHHA 70


>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
           inhibitory receptor, disulfide, immune system; 1.70A
           {Homo sapiens}
          Length = 196

 Score = 25.6 bits (56), Expect = 4.0
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 11/52 (21%)

Query: 75  RCKGC-----YFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTNKS 121
            C+G      Y L KE          P  +Q    PK+K  + +  ++ + +
Sbjct: 25  WCQGTLEAREYRLDKEE------SPAPWDRQNPLEPKNKARFSIPSMTEDYA 70


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0512    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,749,970
Number of extensions: 86789
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 11
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)