RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16814
         (124 letters)



>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli
           [TaxId: 562]}
          Length = 38

 Score = 42.3 bits (100), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K +A VKK C+ C  + ++GV+  +C  +PKHKQ
Sbjct: 2   KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35


>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 37

 Score = 37.3 bits (87), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K ++ VKK C  C  + + G +  +C    KHKQ
Sbjct: 2   KVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQ 34


>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn
          (Marsupenaeus japonicus) [TaxId: 27405]}
          Length = 78

 Score = 27.0 bits (60), Expect = 0.26
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 70 AKVKKRCKGCYFLYKEGVLHNLC 92
           KV + C+ C  +++   L  +C
Sbjct: 19 KKVVRVCEDCTNIFRLPGLDGMC 41


>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli
           [TaxId: 562]}
          Length = 152

 Score = 24.2 bits (52), Expect = 4.0
 Identities = 8/50 (16%), Positives = 21/50 (42%)

Query: 45  LPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHL 94
            P+E    ++  L   +++     + + +++ K     +   V+H   HL
Sbjct: 70  FPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHL 119


>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and
           (Sus scrofa) [TaxId: 9606]}
          Length = 174

 Score = 24.2 bits (52), Expect = 4.4
 Identities = 6/42 (14%), Positives = 13/42 (30%)

Query: 71  KVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWI 112
           +V       ++  K         +K + K ++F        I
Sbjct: 15  QVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCI 56


>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor
           NKp46 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 93

 Score = 23.0 bits (49), Expect = 8.0
 Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 7/61 (11%)

Query: 71  KVKKRCKG-----CYFLYKEGVLHNLCHLKPKHKQILFHP--KDKNTWILSGVSTNKSRE 123
           KV   C+       + L KEG   ++     K +           +        +  +  
Sbjct: 20  KVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHA 79

Query: 124 W 124
           W
Sbjct: 80  W 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 454,884
Number of extensions: 19320
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 11
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)