Query psy16816
Match_columns 470
No_of_seqs 290 out of 1761
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 22:49:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2765|consensus 100.0 1.9E-62 4.1E-67 484.4 23.3 397 16-436 3-415 (416)
2 PF06027 DUF914: Eukaryotic pr 99.9 3.5E-25 7.5E-30 224.0 26.8 220 190-416 83-309 (334)
3 PLN00411 nodulin MtN21 family 99.9 1.4E-22 3E-27 208.3 26.6 230 180-417 73-333 (358)
4 TIGR00950 2A78 Carboxylate/Ami 99.9 1.2E-20 2.5E-25 184.8 26.7 215 182-407 43-259 (260)
5 KOG4314|consensus 99.9 5.5E-23 1.2E-27 188.3 7.5 236 175-416 42-280 (290)
6 PRK11272 putative DMT superfam 99.9 4.5E-20 9.8E-25 184.8 28.9 196 205-414 90-287 (292)
7 PRK11453 O-acetylserine/cystei 99.9 4.4E-20 9.6E-25 185.5 28.5 204 205-414 80-289 (299)
8 PRK11689 aromatic amino acid e 99.9 5.9E-20 1.3E-24 184.3 27.8 195 206-414 87-289 (295)
9 TIGR00817 tpt Tpt phosphate/ph 99.9 1.8E-20 3.9E-25 188.4 23.1 229 178-414 58-295 (302)
10 PTZ00343 triose or hexose phos 99.8 3.3E-19 7.1E-24 183.2 26.2 224 182-413 110-349 (350)
11 PRK10532 threonine and homoser 99.8 6.2E-18 1.3E-22 169.5 29.2 200 196-413 81-282 (293)
12 PRK15430 putative chlorampheni 99.8 3E-18 6.5E-23 172.0 26.6 202 197-414 84-287 (296)
13 TIGR03340 phn_DUF6 phosphonate 99.8 4.7E-18 1E-22 169.2 19.9 214 186-409 63-280 (281)
14 COG0697 RhaT Permeases of the 99.8 1.5E-16 3.2E-21 156.6 27.9 207 195-413 79-288 (292)
15 PF08449 UAA: UAA transporter 99.7 4.1E-16 9E-21 157.1 25.8 229 177-416 59-301 (303)
16 KOG4510|consensus 99.7 2.1E-17 4.6E-22 158.0 7.4 209 196-416 108-329 (346)
17 TIGR00688 rarD rarD protein. T 99.7 8.6E-15 1.9E-19 143.7 21.6 173 196-387 80-255 (256)
18 TIGR00776 RhaT RhaT L-rhamnose 99.6 3.7E-14 8E-19 142.2 23.3 216 181-412 54-288 (290)
19 KOG1441|consensus 99.5 1.3E-14 2.7E-19 145.7 9.7 226 183-416 80-311 (316)
20 PF04142 Nuc_sug_transp: Nucle 99.4 3.3E-11 7.1E-16 117.9 23.9 211 181-403 13-244 (244)
21 KOG3912|consensus 99.3 6.2E-11 1.3E-15 114.7 16.3 212 199-413 100-335 (372)
22 KOG1443|consensus 99.3 3.2E-10 6.9E-15 111.2 20.3 223 177-410 75-313 (349)
23 COG5006 rhtA Threonine/homoser 99.3 5.4E-10 1.2E-14 107.0 20.8 222 177-416 63-286 (292)
24 KOG2766|consensus 99.3 3.9E-13 8.5E-18 128.2 -1.8 211 191-413 83-300 (336)
25 KOG2234|consensus 99.2 2.8E-09 6.1E-14 107.1 24.0 213 183-413 90-323 (345)
26 PF03151 TPT: Triose-phosphate 99.1 3E-09 6.5E-14 95.7 15.2 140 272-412 1-153 (153)
27 COG2962 RarD Predicted permeas 99.1 3.3E-08 7.3E-13 97.0 23.3 204 192-416 77-287 (293)
28 KOG1580|consensus 99.1 1.5E-09 3.2E-14 102.9 11.6 209 194-413 93-314 (337)
29 KOG1444|consensus 99.0 2.3E-08 4.9E-13 99.3 17.3 217 185-416 76-304 (314)
30 PF00892 EamA: EamA-like trans 98.9 1.9E-08 4.2E-13 86.3 11.7 124 281-411 1-125 (126)
31 KOG1442|consensus 98.7 1E-09 2.3E-14 106.0 -1.2 207 205-416 123-331 (347)
32 COG2510 Predicted membrane pro 98.7 7.1E-08 1.5E-12 83.6 10.0 131 272-411 4-138 (140)
33 KOG1582|consensus 98.7 1.3E-06 2.8E-11 84.8 17.8 306 16-429 32-347 (367)
34 KOG1581|consensus 98.6 3.7E-06 8.1E-11 83.0 19.6 213 199-416 96-317 (327)
35 TIGR00803 nst UDP-galactose tr 98.6 3.2E-07 7E-12 88.2 11.3 191 208-409 2-221 (222)
36 KOG1583|consensus 98.6 8.6E-08 1.9E-12 93.1 6.1 222 177-413 59-315 (330)
37 PF06800 Sugar_transport: Suga 98.5 2.1E-05 4.5E-10 77.7 19.5 217 178-409 36-268 (269)
38 PF13536 EmrE: Multidrug resis 98.4 1.1E-06 2.3E-11 75.8 8.0 62 198-263 47-110 (113)
39 TIGR03340 phn_DUF6 phosphonate 98.3 3.7E-05 8.1E-10 76.6 17.0 134 273-413 3-136 (281)
40 PF05653 Mg_trans_NIPA: Magnes 98.3 2.1E-05 4.6E-10 79.3 15.0 199 205-413 71-293 (300)
41 PF00892 EamA: EamA-like trans 98.2 2.4E-06 5.1E-11 73.2 6.3 78 178-258 46-125 (126)
42 PRK13499 rhamnose-proton sympo 98.1 0.00072 1.6E-08 69.3 23.4 225 184-413 71-342 (345)
43 PRK15430 putative chlorampheni 98.1 0.00012 2.6E-09 73.5 16.7 139 268-413 5-146 (296)
44 TIGR00688 rarD rarD protein. T 98.0 0.00022 4.8E-09 69.9 16.6 138 271-413 2-143 (256)
45 PRK02971 4-amino-4-deoxy-L-ara 98.0 6.4E-05 1.4E-09 66.5 10.6 74 342-415 50-125 (129)
46 COG5070 VRG4 Nucleotide-sugar 98.0 8.9E-05 1.9E-09 70.4 11.7 205 205-416 89-300 (309)
47 PRK15051 4-amino-4-deoxy-L-ara 97.9 7.6E-05 1.6E-09 64.3 9.4 63 194-259 45-109 (111)
48 PF13536 EmrE: Multidrug resis 97.8 0.00023 5E-09 61.2 10.5 78 337-415 32-109 (113)
49 PF06027 DUF914: Eukaryotic pr 97.7 0.00055 1.2E-08 70.0 13.6 78 337-416 78-155 (334)
50 PRK11272 putative DMT superfam 97.5 0.0064 1.4E-07 60.9 17.3 131 273-413 10-142 (292)
51 PRK15051 4-amino-4-deoxy-L-ara 97.5 0.0015 3.2E-08 56.3 10.8 66 346-411 43-108 (111)
52 COG2510 Predicted membrane pro 97.4 0.00013 2.9E-09 63.5 3.9 58 199-259 80-139 (140)
53 PLN00411 nodulin MtN21 family 97.4 0.0068 1.5E-07 62.8 17.0 135 271-412 13-156 (358)
54 TIGR00950 2A78 Carboxylate/Ami 97.3 0.0044 9.6E-08 60.4 14.0 78 335-413 42-120 (260)
55 KOG2922|consensus 97.1 0.0044 9.5E-08 62.2 11.5 201 205-413 85-307 (335)
56 PRK02971 4-amino-4-deoxy-L-ara 97.1 0.0036 7.9E-08 55.4 9.1 66 194-262 56-125 (129)
57 COG2962 RarD Predicted permeas 97.0 0.015 3.2E-07 57.7 14.0 137 269-415 5-147 (293)
58 TIGR00776 RhaT RhaT L-rhamnose 97.0 0.016 3.5E-07 58.2 14.7 130 272-413 2-137 (290)
59 PF03151 TPT: Triose-phosphate 97.0 0.0045 9.8E-08 55.3 9.7 72 183-257 78-151 (153)
60 PRK11453 O-acetylserine/cystei 97.0 0.03 6.6E-07 56.2 16.2 127 273-413 6-133 (299)
61 COG0697 RhaT Permeases of the 97.0 0.042 9.1E-07 53.7 16.6 140 269-416 5-147 (292)
62 TIGR00817 tpt Tpt phosphate/ph 96.9 0.032 6.9E-07 56.0 15.9 76 335-411 61-136 (302)
63 PRK10452 multidrug efflux syst 96.8 0.011 2.4E-07 51.6 10.0 67 348-414 38-105 (120)
64 PRK11689 aromatic amino acid e 96.8 0.0046 9.9E-08 62.1 8.8 78 180-261 210-289 (295)
65 PRK09541 emrE multidrug efflux 96.8 0.013 2.9E-07 50.3 10.0 66 349-414 39-105 (110)
66 PRK13499 rhamnose-proton sympo 96.5 0.062 1.3E-06 55.3 14.2 141 268-412 4-153 (345)
67 PRK11431 multidrug efflux syst 96.4 0.027 5.9E-07 48.0 9.5 66 349-414 38-104 (105)
68 PRK10532 threonine and homoser 96.4 0.015 3.4E-07 58.2 9.5 61 198-261 221-283 (293)
69 PTZ00343 triose or hexose phos 96.4 0.17 3.6E-06 52.3 17.3 75 337-413 112-187 (350)
70 PF05653 Mg_trans_NIPA: Magnes 96.4 0.026 5.7E-07 57.1 10.9 121 267-414 3-124 (300)
71 COG2076 EmrE Membrane transpor 96.3 0.037 8E-07 47.1 9.6 65 350-414 40-105 (106)
72 COG4975 GlcU Putative glucose 96.2 0.0011 2.3E-08 64.1 -0.2 217 180-411 53-284 (288)
73 PRK10650 multidrug efflux syst 96.0 0.066 1.4E-06 46.0 9.6 62 350-411 45-107 (109)
74 PRK10452 multidrug efflux syst 95.9 0.04 8.7E-07 48.1 8.1 65 194-261 38-105 (120)
75 PRK09541 emrE multidrug efflux 95.9 0.044 9.6E-07 47.1 8.0 64 194-260 38-104 (110)
76 PF06379 RhaT: L-rhamnose-prot 95.8 2.7 5.8E-05 43.1 21.8 228 185-413 72-341 (344)
77 PF08449 UAA: UAA transporter 95.8 0.28 6E-06 49.5 14.7 74 342-416 67-140 (303)
78 PRK10650 multidrug efflux syst 95.2 0.12 2.6E-06 44.4 8.4 60 195-257 44-106 (109)
79 PF10639 UPF0546: Uncharacteri 95.0 0.07 1.5E-06 46.1 6.4 70 185-257 41-112 (113)
80 PRK11431 multidrug efflux syst 94.9 0.21 4.5E-06 42.6 9.0 59 197-258 40-101 (105)
81 PF06379 RhaT: L-rhamnose-prot 94.8 0.65 1.4E-05 47.4 13.6 143 267-413 3-154 (344)
82 COG2076 EmrE Membrane transpor 94.7 0.2 4.3E-06 42.7 8.2 52 205-259 51-103 (106)
83 PF04657 DUF606: Protein of un 94.5 1.3 2.8E-05 39.6 13.6 130 272-409 2-138 (138)
84 PF00893 Multi_Drug_Res: Small 94.0 0.23 5.1E-06 41.2 7.2 55 349-403 38-93 (93)
85 PF04142 Nuc_sug_transp: Nucle 94.0 0.32 7E-06 47.7 9.4 78 338-416 16-93 (244)
86 PF00893 Multi_Drug_Res: Small 92.8 0.38 8.3E-06 39.9 6.6 52 195-249 38-92 (93)
87 COG3238 Uncharacterized protei 91.7 4.7 0.0001 36.6 12.6 36 376-411 106-145 (150)
88 PF07857 DUF1632: CEO family ( 91.2 0.79 1.7E-05 45.3 7.8 36 272-307 1-36 (254)
89 COG5006 rhtA Threonine/homoser 89.3 1.6 3.5E-05 42.9 7.8 74 180-256 203-279 (292)
90 KOG2765|consensus 88.3 0.68 1.5E-05 47.7 4.8 76 341-417 161-236 (416)
91 PF06800 Sugar_transport: Suga 84.6 2.5 5.4E-05 42.1 6.5 68 186-256 195-268 (269)
92 KOG1444|consensus 84.0 16 0.00035 37.1 11.9 134 276-415 13-152 (314)
93 TIGR00803 nst UDP-galactose tr 82.6 2.1 4.5E-05 40.9 5.0 49 205-256 173-221 (222)
94 KOG4314|consensus 81.3 0.78 1.7E-05 43.3 1.4 65 351-415 64-128 (290)
95 KOG3912|consensus 80.3 3.8 8.2E-05 40.9 5.8 73 350-422 96-168 (372)
96 PF11742 DUF3302: Protein of u 80.1 16 0.00034 29.4 8.2 62 270-331 5-71 (78)
97 PF10639 UPF0546: Uncharacteri 79.9 5 0.00011 34.7 5.8 55 355-409 56-111 (113)
98 KOG4510|consensus 76.6 0.88 1.9E-05 45.0 0.3 69 343-413 101-170 (346)
99 PF13127 DUF3955: Protein of u 68.2 2.8 6E-05 32.4 1.2 39 23-61 2-41 (63)
100 KOG1580|consensus 67.2 7.7 0.00017 37.8 4.2 59 197-258 252-312 (337)
101 KOG4831|consensus 65.4 8.4 0.00018 32.8 3.6 70 186-258 53-124 (125)
102 KOG2922|consensus 65.2 4.3 9.4E-05 41.2 2.2 121 267-413 17-137 (335)
103 KOG2234|consensus 63.7 1.7E+02 0.0037 30.3 13.3 62 352-413 104-165 (345)
104 KOG1441|consensus 62.5 5.1 0.00011 40.9 2.2 78 335-413 79-156 (316)
105 TIGR02865 spore_II_E stage II 61.2 2E+02 0.0043 33.1 14.9 44 211-257 11-54 (764)
106 TIGR01299 synapt_SV2 synaptic 60.8 1.7E+02 0.0038 33.5 14.3 21 184-204 442-462 (742)
107 PF07857 DUF1632: CEO family ( 56.3 96 0.0021 30.7 9.9 108 185-293 54-205 (254)
108 PRK02237 hypothetical protein; 53.5 88 0.0019 26.8 7.8 39 375-413 68-106 (109)
109 KOG2766|consensus 53.4 1.2 2.6E-05 43.8 -3.8 90 339-429 78-172 (336)
110 PRK15015 carbon starvation pro 53.1 1.8E+02 0.0039 32.9 12.1 40 374-413 197-239 (701)
111 PF04657 DUF606: Protein of un 52.9 83 0.0018 28.0 8.1 71 185-256 66-138 (138)
112 PF06570 DUF1129: Protein of u 51.2 2.1E+02 0.0045 27.1 11.1 19 272-290 112-130 (206)
113 PF02694 UPF0060: Uncharacteri 50.2 70 0.0015 27.3 6.7 39 375-413 66-104 (107)
114 PRK11715 inner membrane protei 47.5 3.9E+02 0.0084 28.7 15.4 76 339-419 359-434 (436)
115 PF06570 DUF1129: Protein of u 46.6 2.6E+02 0.0056 26.4 11.1 25 270-294 178-202 (206)
116 PF06123 CreD: Inner membrane 46.0 4E+02 0.0088 28.5 16.6 77 338-419 352-428 (430)
117 PF04342 DUF486: Protein of un 45.6 23 0.0005 30.1 3.1 29 382-410 78-106 (108)
118 PF05297 Herpes_LMP1: Herpesvi 44.9 7.2 0.00016 38.9 0.0 75 201-279 39-115 (381)
119 KOG1442|consensus 44.0 8.6 0.00019 38.4 0.4 56 356-411 118-173 (347)
120 KOG1582|consensus 42.9 1.5E+02 0.0032 29.9 8.6 76 185-263 259-336 (367)
121 PF02694 UPF0060: Uncharacteri 40.7 42 0.00092 28.6 4.0 37 222-261 69-105 (107)
122 COG3086 RseC Positive regulato 40.5 43 0.00094 30.2 4.2 37 210-250 74-110 (150)
123 PF11085 YqhR: Conserved membr 40.4 3.1E+02 0.0067 25.5 14.2 40 175-214 12-53 (173)
124 COG1030 NfeD Membrane-bound se 40.3 4.9E+02 0.011 27.9 14.1 65 208-283 231-295 (436)
125 PRK02237 hypothetical protein; 38.4 46 0.00099 28.5 3.8 34 224-260 73-106 (109)
126 COG4975 GlcU Putative glucose 36.2 17 0.00038 35.7 1.1 73 183-258 206-284 (288)
127 TIGR00806 rfc RFC reduced fola 33.5 6.8E+02 0.015 27.5 13.5 64 236-299 86-149 (511)
128 TIGR00898 2A0119 cation transp 32.7 6.1E+02 0.013 26.7 14.2 69 184-256 324-399 (505)
129 PRK11663 regulatory protein Uh 31.9 6E+02 0.013 26.3 12.5 24 236-259 82-105 (434)
130 COG1742 Uncharacterized conser 31.6 70 0.0015 27.3 3.8 37 222-261 70-106 (109)
131 TIGR01299 synapt_SV2 synaptic 30.8 8.7E+02 0.019 27.9 15.9 19 236-254 226-244 (742)
132 COG4657 RnfA Predicted NADH:ub 30.6 4.4E+02 0.0096 24.4 9.5 104 178-291 39-152 (193)
133 COG3169 Uncharacterized protei 29.1 3.6E+02 0.0077 22.9 7.5 31 381-411 84-114 (116)
134 PF00909 Ammonium_transp: Ammo 26.5 7.6E+02 0.017 25.8 14.8 93 212-312 225-318 (399)
135 PF11023 DUF2614: Protein of u 26.4 64 0.0014 27.8 2.8 25 236-260 5-29 (114)
136 PF07444 Ycf66_N: Ycf66 protei 25.9 3.7E+02 0.008 22.0 8.4 46 267-317 7-52 (84)
137 KOG1443|consensus 24.9 2.2E+02 0.0048 29.1 6.7 50 205-257 264-313 (349)
138 PF04246 RseC_MucC: Positive r 23.5 1.1E+02 0.0024 26.8 3.9 19 214-232 71-89 (135)
139 PF06813 Nodulin-like: Nodulin 23.3 7.1E+02 0.015 24.4 10.0 16 240-255 128-143 (250)
140 PRK09577 multidrug efflux prot 22.9 3.6E+02 0.0078 32.2 9.2 37 374-411 896-935 (1032)
141 COG5070 VRG4 Nucleotide-sugar 22.9 4.7E+02 0.01 25.7 8.2 46 370-415 98-143 (309)
142 COG2271 UhpC Sugar phosphate p 22.0 7.9E+02 0.017 26.4 10.4 46 268-313 346-392 (448)
143 PF10754 DUF2569: Protein of u 20.6 2.6E+02 0.0057 25.0 5.9 29 267-295 117-145 (149)
144 PF08507 COPI_assoc: COPI asso 20.5 5.8E+02 0.013 22.3 12.4 20 394-413 87-106 (136)
No 1
>KOG2765|consensus
Probab=100.00 E-value=1.9e-62 Score=484.43 Aligned_cols=397 Identities=28% Similarity=0.460 Sum_probs=303.2
Q ss_pred hhhhhhhhHHHhhHHHHHHHHHhhhhhHHHHHHHhcc-CCCCCccccCCCCCCcccccchhhhhhhhhhhhhhhhhhhcc
Q psy16816 16 NVLLSRFQRHALGCFVLILVDILWALSSEIVKKVDQH-VEDESYFTDQTEPPGELKFPLHNLFIQVFLLVSIKKLQSASR 94 (470)
Q Consensus 16 ~~~~~~~~r~~~G~~ll~~v~~~Wv~S~~l~~~if~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 94 (470)
+.+.+++|||++|+++|++|+++||+||||||+||++ .|++|||.||. |+++|.+++.|.. .+++.+
T Consensus 3 ~~~~~~~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~-----------~ts~fivYL~~~~-~~d~~~ 70 (416)
T KOG2765|consen 3 RSGFTKRWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYL-----------KTSLFIVYLPPFI-LIDAPW 70 (416)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeee-----------cccceehhhhhhh-hhcchh
Confidence 4567788999999999999999999999999999998 88999999982 3334555555433 232211
Q ss_pred cCcccc-c-cccCCCC-CCCccccccchhccccccccCccccCCCcccccccccccCChhhHHHHHHHhhhHHHhhhhcc
Q psy16816 95 GLHGKV-L-FSGRSSG-TESETENSMRKHVRFSKLTERPQVLGVPASFLMEAPVRHLSDKEANEALLARLSYQATLRTAD 171 (470)
Q Consensus 95 ~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (470)
...-.+ + ..++... .+++++-+..- -.|..| .+.++....++..++++..++.... ...-+.+...+.
T Consensus 71 ~~~~~R~~~~~~~~~~e~d~e~y~~~~~---~~~~~~----~~l~~~~~~~~~~~~l~s~~~~~~~--s~~~e~~~~~~~ 141 (416)
T KOG2765|consen 71 RILETRSKRSNHAIMEEADAEGYFSACT---TDKTME----SGLSGPESVPDKSPLLGSGEEEKPE--STNLEVREKANT 141 (416)
T ss_pred hhhhhhccccchhhhhhhhhhccccccc---cccccc----cccCCceeeeccccccccccccCCC--CccccccccCCc
Confidence 110000 0 0000000 00000000000 001111 1222222222222222211100000 000000000000
Q ss_pred ---cccccCCCCChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHH
Q psy16816 172 ---FTFIQSTKYNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVT 246 (470)
Q Consensus 172 ---~~~~~~~~l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~ig 246 (470)
+..+.+++++.++++++++.||++||++||+|+ |+||++++.+++++|+.+||++++.+|. .||+++.|+++
T Consensus 142 ~~rs~l~~~~~~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~---~e~ft~sKlla 218 (416)
T KOG2765|consen 142 KKRSNLKERGKLTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFP---VERFTLSKLLA 218 (416)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcC---cchhhHHHHHH
Confidence 123446789999999999999999999999999 9999999999999999999999999998 99999999999
Q ss_pred HHHHHHHhheeeecCccc----ccccchHHHHHHHHHHHHHHHHHHHH-HHhccC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy16816 247 VCISVCGLILVTISDVYM----EHLHIPSGSFLSLVSALFYSLYIVFL-RRLEHE-EKLDIVLFYGFVGLYNCLLLWPLF 320 (470)
Q Consensus 247 vll~~~GVvli~~~~~~~----~~~~~~~G~llaL~sAl~~Al~~vl~-r~l~~~-~~~~~~~~~g~vglf~l~~l~p~~ 320 (470)
++++++||++++.+|... .+.+..+|++++++||+.||+|.++. |+.++| +++|+++|||++|+|+++++||.+
T Consensus 219 v~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l 298 (416)
T KOG2765|consen 219 VFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPL 298 (416)
T ss_pred HHHhhccEEEEEeccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999997643 24567999999999999999999999 777777 699999999999999999999999
Q ss_pred HHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHH
Q psy16816 321 FLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGA 400 (470)
Q Consensus 321 ~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~ 400 (470)
+++++++.|+|+.|+..+...++.++++++++++|+|.+|+.+|+|++++++++++||+|+++|+++.|.++++.+++|+
T Consensus 299 ~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGs 378 (416)
T KOG2765|consen 299 IILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGS 378 (416)
T ss_pred HHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCChhhhhhhhhh-hccCCC
Q psy16816 401 VPVVFAFVASILLAQMASRDPVLEILLSCV-TSLSGP 436 (470)
Q Consensus 401 ~lIl~g~~l~~~~~~~~~~d~~~~~~~~~~-~~~~k~ 436 (470)
+.|++|++++|+.++.+.+||.+...++++ ..||.+
T Consensus 379 i~Ifv~Fv~vn~~~~~~~~~~~~~~~r~~~~~~~~~~ 415 (416)
T KOG2765|consen 379 IPIFVGFVIVNISSENSKKDPLMAIEREPGVEVCRPH 415 (416)
T ss_pred HHHHHHHhheeccccccccccchheeeccceecCCCC
Confidence 999999999999999999999988887776 566654
No 2
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=3.5e-25 Score=223.96 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCccc---
Q psy16816 190 FVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYM--- 264 (470)
Q Consensus 190 ~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~--- 264 (470)
+..++++..+||+.. ++||+++++++|.+++-+|+++++++++ ++|+++.|++|++++++|++++...|...
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL---~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~ 159 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFL---KRRYSWFHILGVLICIAGVVLVVVSDVLSGSD 159 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhhhheeeeccccccc
Confidence 345789999999999 9999999999999999999999999999 99999999999999999999999887543
Q ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHH
Q psy16816 265 --EHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVIL 342 (470)
Q Consensus 265 --~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~l 342 (470)
+.++...||+++++||++||+++|+.++.-+ +.+...++|++|+|+.++.++...+++..+++.++++.. .+.++
T Consensus 160 ~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~--~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~-~~~~~ 236 (334)
T PF06027_consen 160 SSSGSNPILGDLLALLGAILYAVSNVLEEKLVK--KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQ-VIGLL 236 (334)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChh-hHHHH
Confidence 2356799999999999999999999955544 234567889999999999998888888888887766543 33443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 343 LIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 343 l~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
+..++ +..+.|.++...+++++|+..++++....|.++++|++++|++++|.+++|.++|++|+++++..+++
T Consensus 237 v~~~~-~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 237 VGYAL-CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHH-HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 43333 46677888899999999999999988889999999999999999999999999999999999976544
No 3
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.91 E-value=1.4e-22 Score=208.25 Aligned_cols=230 Identities=11% Similarity=0.124 Sum_probs=161.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHh------cCCCCCccchhhHHHHHHHH
Q psy16816 180 YNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFF------PSSSSDKFSLSKCVTVCISV 251 (470)
Q Consensus 180 l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf------~~~~~ek~s~~k~igvll~~ 251 (470)
.++++..++.+..... ++.+.+++ ++|++++.++++.++.|+||+++++++ + +||++++|++|+++++
T Consensus 73 ~~~~~~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~---~er~~~~~~~G~~l~~ 148 (358)
T PLN00411 73 LSVSILSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSF---KERSSVAKVMGTILSL 148 (358)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhh---cccccHHHHHHHHHHH
Confidence 4455556665544433 23333333 999999999999999999999999999 7 8999999999999999
Q ss_pred HHhheeeecCcc---------------------cccccchHHHHHHHHHHHHHHHHHHHHHHhcc-CCch-hHHHHHHHH
Q psy16816 252 CGLILVTISDVY---------------------MEHLHIPSGSFLSLVSALFYSLYIVFLRRLEH-EEKL-DIVLFYGFV 308 (470)
Q Consensus 252 ~GVvli~~~~~~---------------------~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~-~~~~-~~~~~~g~v 308 (470)
+|++++..+++. ....+..+|++++++|+++||+|+++.|+..+ .+.. ....+.+.+
T Consensus 149 ~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~ 228 (358)
T PLN00411 149 IGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVC 228 (358)
T ss_pred HHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHH
Confidence 999987753221 01122366999999999999999999976644 2222 222222222
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHh
Q psy16816 309 GLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLY 388 (470)
Q Consensus 309 glf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ 388 (470)
+. +.+..+.. .........+.......+..+++.|+. +.+++.+|++++++.+|..+++...+...++++++++++
T Consensus 229 ~~--~~~~~~~l-~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~L 304 (358)
T PLN00411 229 VS--IVTSMIGL-VVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFL 304 (358)
T ss_pred HH--HHHHHHHH-HHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHh
Confidence 22 11111211 111111111211111223447777876 678999999999999999999877655444999999999
Q ss_pred CCCCCHHHHhHHHHHHHHHHHHHhhhccc
Q psy16816 389 HVTYPRLFYVGAVPVVFAFVASILLAQMA 417 (470)
Q Consensus 389 ge~~s~~~iiG~~lIl~g~~l~~~~~~~~ 417 (470)
||++++.+++|+++|++|++++++.+++|
T Consensus 305 gE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 305 NDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999876654
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.88 E-value=1.2e-20 Score=184.76 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeee
Q psy16816 182 IPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTI 259 (470)
Q Consensus 182 ~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~ 259 (470)
.++..+..........+.+.+++ ++|++++.++++.++.|+++++++++++ |||+++++++|++++++|++++..
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~---~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 43 LKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMG---KERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHc---cCCCcHHHHHHHHHHHHhHHhhcc
Confidence 34444444444444455555555 9999999999999999999999999999 999999999999999999999876
Q ss_pred cCcccccccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHH
Q psy16816 260 SDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQW 339 (470)
Q Consensus 260 ~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~ 339 (470)
++.. +....|++++++|+++|+.+.+..|+..++.+.+...+..+...++.+++.|.... .+ ++. .++...|
T Consensus 120 ~~~~---~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~~-~~~~~~~ 191 (260)
T TIGR00950 120 DGNL---SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWF---LG-PNP-QALSLQW 191 (260)
T ss_pred CCcc---cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHh---cC-CCC-CcchHHH
Confidence 5422 34578999999999999999999988765322222222212222333444444321 11 111 2245677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHH
Q psy16816 340 VILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAF 407 (470)
Q Consensus 340 ~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~ 407 (470)
..+++.|++++.+++.+|++++++.++..+++...+..+++++++++++||++++.+++|.++++.|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 192 GALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999998776666669999999999999999999999999986
No 5
>KOG4314|consensus
Probab=99.88 E-value=5.5e-23 Score=188.26 Aligned_cols=236 Identities=17% Similarity=0.275 Sum_probs=210.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHH
Q psy16816 175 IQSTKYNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVC 252 (470)
Q Consensus 175 ~~~~~l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~ 252 (470)
.+++.++.|..++...+|.++|..+||.|. |+..+++.++.+..++-.|+++++++.+ +||+...|++++++++.
T Consensus 42 Ge~kG~nik~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL---~D~~~~~kIlaailAI~ 118 (290)
T KOG4314|consen 42 GEDKGFNIKLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVL---GDRFMGFKILAAILAIG 118 (290)
T ss_pred ccccCceeeeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHh---ccchhhhhHHHHHHHhC
Confidence 345678888899999999999999999999 9999999999999999999999999999 99999999999999999
Q ss_pred HhheeeecCcccccccchHHHHHHHHHHHHHHHHHHHHHHh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy16816 253 GLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRL-EHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVF 331 (470)
Q Consensus 253 GVvli~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r~l-~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~ 331 (470)
|++++++.|... ...++|+.+++.||...|+|.|+.|+. ++..--+...|++..|.+++.+.|....+++++|+|.+
T Consensus 119 GiVmiay~DN~~--a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~ 196 (290)
T KOG4314|consen 119 GIVMIAYADNEH--ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHL 196 (290)
T ss_pred cEEEEEeccchh--hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHH
Confidence 999999988763 567999999999999999999999554 44444478899999999999999988888999999987
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 332 SLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 332 ~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
+......|..++..+.+ +...+++.+.++.++.|+..++++.+.+|.....|.++.+-.++...+.|..+|++|++++.
T Consensus 197 qsFA~~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii 275 (290)
T KOG4314|consen 197 QSFAAAPWGCLCGAAGL-SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII 275 (290)
T ss_pred HHHhhCCchhhhhHHHH-HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence 64444567788888877 55568999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q psy16816 412 LLAQM 416 (470)
Q Consensus 412 ~~~~~ 416 (470)
.+..+
T Consensus 276 iP~d~ 280 (290)
T KOG4314|consen 276 IPEDK 280 (290)
T ss_pred cccch
Confidence 88544
No 6
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.88 E-value=4.5e-20 Score=184.83 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=153.4
Q ss_pred h-hccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHHHHH
Q psy16816 205 L-LGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFY 283 (470)
Q Consensus 205 L-~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~ 283 (470)
+ ++++++.++++.++.|+|+.+++++ + |||+++++++|++++++|+.++..++.. +....|++++++|+++|
T Consensus 90 ~~~~~~a~~a~~l~~~~Pl~~~lla~~-~---~e~~~~~~~~~~~la~~Gv~ll~~~~~~---~~~~~G~l~~l~a~~~~ 162 (292)
T PRK11272 90 EHQNVPSGIAAVVVATVPLFTLCFSRL-F---GIRTRKLEWLGIAIGLAGIVLLNSGGNL---SGNPWGAILILIASASW 162 (292)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHH-h---cccCchhHHHHHHHHHHhHHHHhcCccc---ccchHHHHHHHHHHHHH
Confidence 6 9999999999999999999999985 6 8999999999999999999988654322 23467999999999999
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16816 284 SLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVF-SLPDRDQWVILLIEGLIGSVLTETLWLWGML 362 (470)
Q Consensus 284 Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~-~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~ 362 (470)
|.|.+..|+..+.+......+...++ .+.+.+.... .+ +++ ..++...|..+++.|++++++++.+|+++++
T Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~-~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~ 235 (292)
T PRK11272 163 AFGSVWSSRLPLPVGMMAGAAEMLAA---GVVLLIASLL---SG-ERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLR 235 (292)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHH---HHHHHHHHHH---cC-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876533322222221222 2222222211 11 122 2245578889999999999999999999999
Q ss_pred hhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 363 LTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 363 ~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
+.++..+++...+..+++++++++++||++++.+++|+++|+.|+++.++.+
T Consensus 236 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 236 NVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887655545599999999999999999999999999999988653
No 7
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.88 E-value=4.4e-20 Score=185.50 Aligned_cols=204 Identities=12% Similarity=0.183 Sum_probs=153.9
Q ss_pred hhc-cchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHHHHH
Q psy16816 205 LLG-AEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFY 283 (470)
Q Consensus 205 L~~-tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~ 283 (470)
++| .+++.++++.+++|+|+.+++++++ |||++.+++++++++++|+.++..++.... .....|++++++++++|
T Consensus 80 ~~~~~~a~~a~~l~~~~pi~~~ll~~~~l---~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~-~~~~~G~~l~l~aal~~ 155 (299)
T PRK11453 80 INFGMPAGLASLVLQAQAFFTIVLGAFTF---GERLQGKQLAGIALAIFGVLVLIEDSLNGQ-HVAMLGFMLTLAAAFSW 155 (299)
T ss_pred HHhcCCHHHHHHHHHhHHHHHHHHHHHHh---cCcCcHHHHHHHHHHHHhHHHhccccCCCc-chhHHHHHHHHHHHHHH
Confidence 777 5889999999999999999999999 999999999999999999999986543221 23457999999999999
Q ss_pred HHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhccc---ccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16816 284 SLYIVFLRRLEHE-EKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSW---EVFSLPDRDQWVILLIEGLIGSVLTETLWLW 359 (470)
Q Consensus 284 Al~~vl~r~l~~~-~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~---e~~~~p~~~~~~~ll~~gil~s~ls~~l~~~ 359 (470)
|+|.++.|+..+. +......+..+..+...+.+....... ..+. +++...+...|..++++|++++++++++|++
T Consensus 156 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~ 234 (299)
T PRK11453 156 ACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL-DGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGT 234 (299)
T ss_pred HHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876542 222222211122221111111111111 0000 1122334578999999999999999999999
Q ss_pred HHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 360 GMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 360 ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
++++.++..++.... ..|+ +++++++++||++++.+++|+++|+.|+++..+++
T Consensus 235 ~l~~~~a~~~s~~~~-l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 235 LLGRYETWRVAPLSL-LVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 999999988887554 5566 99999999999999999999999999999988764
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.87 E-value=5.9e-20 Score=184.31 Aligned_cols=195 Identities=17% Similarity=0.206 Sum_probs=150.3
Q ss_pred hccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccc-------cccchHHHHHHHH
Q psy16816 206 LGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYME-------HLHIPSGSFLSLV 278 (470)
Q Consensus 206 ~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~-------~~~~~~G~llaL~ 278 (470)
++++++.++++.++.|+|+.+++++++ |||+++++++|++++++|++++..++...+ ......|++++++
T Consensus 87 ~~~~a~~a~~l~~~~Pi~~~ll~~~~~---~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 163 (295)
T PRK11689 87 TRRQAIEVGMVNYLWPSLTILFAVLFN---GQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFI 163 (295)
T ss_pred ccccchHHHHHHHHhHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHH
Confidence 457888999999999999999999999 999999999999999999999987653211 0123579999999
Q ss_pred HHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16816 279 SALFYSLYIVFLRRLEHE-EKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLW 357 (470)
Q Consensus 279 sAl~~Al~~vl~r~l~~~-~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~ls~~l~ 357 (470)
|+++||+|.++.|+..++ +... .++...+ +++++.... .+ ++....+...|..+++.|+ ++.+++++|
T Consensus 164 aa~~~A~~~v~~k~~~~~~~~~~--~~~~~~~----~~l~~~~~~---~~-~~~~~~~~~~~~~l~~~~~-~t~~~~~l~ 232 (295)
T PRK11689 164 GAFIWAAYCNVTRKYARGKNGIT--LFFILTA----LALWIKYFL---SP-QPAMVFSLPAIIKLLLAAA-AMGFGYAAW 232 (295)
T ss_pred HHHHHHHHHHHHhhccCCCCchh--HHHHHHH----HHHHHHHHH---hc-CccccCCHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999887653 2222 2221111 122222211 11 1112234467888888885 689999999
Q ss_pred HHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 358 LWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 358 ~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
++++++.+|..++...++..+++++++++++||++++.+++|+++|+.|+++..+..
T Consensus 233 ~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 233 NVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 999999999999887766655599999999999999999999999999998887553
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.87 E-value=1.8e-20 Score=188.38 Aligned_cols=229 Identities=13% Similarity=0.161 Sum_probs=157.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhh
Q psy16816 178 TKYNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLI 255 (470)
Q Consensus 178 ~~l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVv 255 (470)
.+++.++. +..+..+++..+...+.+ ++|++++.++++.+++|+|+.+++++++ +||++++++++++++++|++
T Consensus 58 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~---~e~~~~~~~~~l~l~~~Gv~ 133 (302)
T TIGR00817 58 LKISSALL-KLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFL---GQEFPSTLWLSLLPIVGGVA 133 (302)
T ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHh
Confidence 34555544 344444444444444444 9999999999999999999999999999 99999999999999999998
Q ss_pred eeeecCcccccccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc--c-c
Q psy16816 256 LVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEV--F-S 332 (470)
Q Consensus 256 li~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~--~-~ 332 (470)
+....+. +....|++++++|+++||+|.+..|+..++++.+......+...++.+++.|.....+..+..+ + .
T Consensus 134 l~~~~~~----~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~ 209 (302)
T TIGR00817 134 LASDTEL----SFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQ 209 (302)
T ss_pred hhcCCcc----cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 7754332 2346799999999999999999997765422333222222233334444555543322111000 0 0
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHH
Q psy16816 333 ----LPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFV 408 (470)
Q Consensus 333 ----~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~ 408 (470)
......+...+..++.+..+.+.++++++++++|..+++...+...++++++++++||++++.+++|++++++|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~ 289 (302)
T TIGR00817 210 AISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVF 289 (302)
T ss_pred hhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHH
Confidence 0111122223333333333344566789999999999987554433488999999999999999999999999999
Q ss_pred HHHhhh
Q psy16816 409 ASILLA 414 (470)
Q Consensus 409 l~~~~~ 414 (470)
++++.+
T Consensus 290 l~~~~k 295 (302)
T TIGR00817 290 LYSRVK 295 (302)
T ss_pred HHHHHh
Confidence 999664
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.85 E-value=3.3e-19 Score=183.19 Aligned_cols=224 Identities=13% Similarity=0.156 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeee
Q psy16816 182 IPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTI 259 (470)
Q Consensus 182 ~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~ 259 (470)
.++.++..++.+++.+..++..+ +++++++.++++.+++|+|+++++++++ +||++++++++++++++|+++.+.
T Consensus 110 ~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l---~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 110 LKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFL---KQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHh---CCCccHHHHHHHHHHHHHHHheec
Confidence 44455555555555544444433 9999999999999999999999999999 999999999999999999999987
Q ss_pred cCcccccccchHHHHHHHHHHHHHHHHHHHHHHhcc-CC----chhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-c--
Q psy16816 260 SDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEH-EE----KLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEV-F-- 331 (470)
Q Consensus 260 ~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~-~~----~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~-~-- 331 (470)
.+.+ .++.|++++++|+++||+|.++.|+..+ .+ +.+....+.+..+++.+++.|.....+...... +
T Consensus 187 ~~~~----~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~ 262 (350)
T PTZ00343 187 KELH----FTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTN 262 (350)
T ss_pred ccch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5543 2478999999999999999999966543 22 244443344444555566666654332111000 1
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHH
Q psy16816 332 --SLPDRDQWVILLIEGLIGSVLTETLWLW----GMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVF 405 (470)
Q Consensus 332 --~~p~~~~~~~ll~~gil~s~ls~~l~~~----ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~ 405 (470)
.......+..+++. ++.+.+.+++|+. ++++++|+..++...+..+++++++++++||++++.+++|++++++
T Consensus 263 ~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~ 341 (350)
T PTZ00343 263 YTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAIL 341 (350)
T ss_pred hhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHH
Confidence 00011112233443 4447788889884 9999999999998877766699999999999999999999999999
Q ss_pred HHHHHHhh
Q psy16816 406 AFVASILL 413 (470)
Q Consensus 406 g~~l~~~~ 413 (470)
|++++++-
T Consensus 342 Gv~lYs~~ 349 (350)
T PTZ00343 342 GALLYSLF 349 (350)
T ss_pred HHHHHhhc
Confidence 99999853
No 11
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.83 E-value=6.2e-18 Score=169.51 Aligned_cols=200 Identities=16% Similarity=0.128 Sum_probs=148.7
Q ss_pred HHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHH
Q psy16816 196 RFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGS 273 (470)
Q Consensus 196 ~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~ 273 (470)
.+..+++++ ++|++++.++++.+++|+|+.+++ +||+. ++.++.++++|+.++..++.+.. +....|+
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~-------~~~~~--~~~~~~i~~~Gv~li~~~~~~~~-~~~~~G~ 150 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS-------SRRPV--DFVWVVLAVLGLWFLLPLGQDVS-HVDLTGA 150 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh-------cCChH--HHHHHHHHHHHHheeeecCCCcc-cCChHHH
Confidence 344455544 999999999999999999998765 34443 45667889999999875443222 3356799
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHHH
Q psy16816 274 FLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLT 353 (470)
Q Consensus 274 llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~ls 353 (470)
+++++++++||.|.+..|+..++.+.....+. ..+..+++.|.... .+ +....+...|..++++|+++++++
T Consensus 151 ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~---~~~~~~~l~~~~~~---~~--~~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 151 ALALGAGACWAIYILSGQRAGAEHGPATVAIG---SLIAALIFVPIGAL---QA--GEALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchHHHHH---HHHHHHHHHHHHHH---cc--CcccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887653222222222 22333334443321 11 111123456667789999999999
Q ss_pred HHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 354 ETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 354 ~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
+.+|++++++.+|..++....++.+++++++++++||++++.+++|+++|+.|.+...+.
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998877776669999999999999999999999999999999755
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.83 E-value=3e-18 Score=172.03 Aligned_cols=202 Identities=11% Similarity=0.099 Sum_probs=145.5
Q ss_pred HHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHH
Q psy16816 197 FGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSF 274 (470)
Q Consensus 197 ~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~l 274 (470)
+..+.+|+ +++++++.++++.++.|+|+.+++++++ +||+++++++|++++++|++++..+++. . .+
T Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l---~E~~~~~~~~g~~l~~~Gv~li~~~~~~----~----~~ 152 (296)
T PRK15430 84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFL---GERFRRMQWLAVILAICGVLVQLWTFGS----L----PI 152 (296)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHHHHHHcCC----c----cH
Confidence 33444444 9999999999999999999999999999 9999999999999999999998754321 1 25
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHH
Q psy16816 275 LSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTE 354 (470)
Q Consensus 275 laL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~ls~ 354 (470)
++++++++||.|.+..|+..+++.........+...+...... .....+...+...+...+..+++.|+ ++.+++
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~ 227 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLF----AIADSSTSHMGQNPMSLNLLLIAAGI-VTTVPL 227 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH----HHccCCcccccCCcHHHHHHHHHHHH-HHHHHH
Confidence 6889999999999999877542222211111111111111111 11111111111112223444555565 477999
Q ss_pred HHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 355 TLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 355 ~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
.+|++++++.+|..++...++..+++++++++++||++++.+++|+++|++|+.++....
T Consensus 228 ~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 228 LCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987766666699999999999999999999999999988887654
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.79 E-value=4.7e-18 Score=169.24 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcc
Q psy16816 186 AKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVY 263 (470)
Q Consensus 186 ~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~ 263 (470)
....+..+.......+++. +++++++.++.+.++.|+++.+++++++ +||+++++++|++++++|++++..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~---~e~~~~~~~~g~~~~~~Gv~ll~~~~~~ 139 (281)
T TIGR03340 63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTL---GETLSPLAWLGILIITLGLLVLGLSRFA 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 3333333333444444444 9999999999999999999999999999 9999999999999999999988765433
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhccC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHH
Q psy16816 264 MEHLHIPSGSFLSLVSALFYSLYIVFLRRLEHE-EK-LDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVI 341 (470)
Q Consensus 264 ~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~-~~-~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ 341 (470)
.....|++++++++++||+|.++.|+..++ ++ .....+.. .+.. +...|........+..+.. +....+..
T Consensus 140 ---~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 212 (281)
T TIGR03340 140 ---QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLG-IGFL--AMGWPFLLLYLKRHGRSMF-PYARQILP 212 (281)
T ss_pred ---ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHH-HHHH--HHHHHHHHHHHHHhccchh-hhHHHHHH
Confidence 233568889999999999999988776432 11 11111111 1111 0001221111111111111 12234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHH
Q psy16816 342 LLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVA 409 (470)
Q Consensus 342 ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l 409 (470)
+++.+.+++.+++.+|++++++.++..++...++..+++.+++++++||++++.+++|+++|++|+++
T Consensus 213 ~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 213 SATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 67777788999999999999999988777666666555999999999999999999999999999875
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.78 E-value=1.5e-16 Score=156.64 Aligned_cols=207 Identities=20% Similarity=0.257 Sum_probs=158.1
Q ss_pred HHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHH-HhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchH
Q psy16816 195 LRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICA-FFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPS 271 (470)
Q Consensus 195 l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~-lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~ 271 (470)
......+.|+ +++++++.++++.++.|+++.++++ +++ +||++++++++++++++|++++..++...... ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~---~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~-~~~ 154 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLL---GERLSLLQILGILLALAGVLLILLGGGGGGIL-SLL 154 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHc---cCCCcHHHHHHHHHHHHhHHheecCCCcchhH-HHH
Confidence 3333444444 9999999999999999999999996 888 99999999999999999999999988764312 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHH
Q psy16816 272 GSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSV 351 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~ 351 (470)
|+++++++++++|++.+..|++.+.+......+ +.......+..+.. .. ..+ .......|..+++.|++++.
T Consensus 155 g~~~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~-~~~-~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 155 GLLLALAAALLWALYTALVKRLSRLGPVTLALL--LQLLLALLLLLLFF----LS-GFG-APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH--HHHHHHHHHHHHHH----hc-ccc-ccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999987762222222221 11111111111111 11 111 12234678889999999888
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 352 LTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 352 ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
+++++|++++++.++..++......++++++++++++||+++..+++|.++++.|.++.+..
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999887665454448888999999999999999999999999999865
No 15
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.75 E-value=4.1e-16 Score=157.10 Aligned_cols=229 Identities=20% Similarity=0.229 Sum_probs=173.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHh
Q psy16816 177 STKYNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGL 254 (470)
Q Consensus 177 ~~~l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GV 254 (470)
.++.+.++++..+ .+++++.++-+ ++|+|.+..+++.++.|+++++++.+++ ++|.+.++++++++..+|+
T Consensus 59 ~~~~~~~~~~~~~----~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~---~k~y~~~~~~~v~li~~Gv 131 (303)
T PF08449_consen 59 SRKIPLKKYAILS----FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLIL---GKRYSRRQYLSVLLITIGV 131 (303)
T ss_pred CCcChHHHHHHHH----HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhc---CccccHHHHHHHHHHHhhH
Confidence 4445556665554 44455556655 9999999999999999999999999999 9999999999999999999
Q ss_pred heeeecCcccccc------cchHHHHHHHHHHHHHHHHHHHHHHhc-cCC--chhHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16816 255 ILVTISDVYMEHL------HIPSGSFLSLVSALFYSLYIVFLRRLE-HEE--KLDIVLFYGFVGLYNCLLLWPLFFLL-- 323 (470)
Q Consensus 255 vli~~~~~~~~~~------~~~~G~llaL~sAl~~Al~~vl~r~l~-~~~--~~~~~~~~g~vglf~l~~l~p~~~~l-- 323 (470)
++....+...... ....|+++.+++.++.|+..+.+++.- +.+ ..+...+. .++++++.++....+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~---n~~~~~~~~~~~~~l~~ 208 (303)
T PF08449_consen 132 AIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYT---NLFSLPFLLILLFLLPT 208 (303)
T ss_pred heeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 9999887643311 123499999999999999999994443 322 22333333 334444444333331
Q ss_pred -hhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHH
Q psy16816 324 -HYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVP 402 (470)
Q Consensus 324 -~~~~~e~~~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~l 402 (470)
+..+..++....+..+..++.+++. ..+++.++++.+++.+|++.++...+..+++++++++++|+++++.+|+|.++
T Consensus 209 ~~~~~~~~f~~~~p~~~~~l~~~s~~-~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~l 287 (303)
T PF08449_consen 209 GEFRSAIRFISAHPSVLLYLLLFSLT-GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVL 287 (303)
T ss_pred hHhhHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHH
Confidence 1211222323344566777777775 67778888999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q psy16816 403 VVFAFVASILLAQM 416 (470)
Q Consensus 403 Il~g~~l~~~~~~~ 416 (470)
++.|..++++.+++
T Consensus 288 v~~g~~~~~~~~~k 301 (303)
T PF08449_consen 288 VFAGIFLYSYAKKK 301 (303)
T ss_pred hHHHHHHHHHhhcc
Confidence 99999999988655
No 16
>KOG4510|consensus
Probab=99.70 E-value=2.1e-17 Score=158.02 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=169.0
Q ss_pred HHHHHHHHH-hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccc---------
Q psy16816 196 RFGAEYTFT-LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYME--------- 265 (470)
Q Consensus 196 ~~~~n~~~~-L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~--------- 265 (470)
++.....|+ +.|+|.++++++..++|+||.+++|+++ ||++++...++.++++.||+++..|..-..
T Consensus 108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~L---kE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s 184 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFL---KEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSS 184 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHH---cCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccc
Confidence 333445555 9999999999999999999999999999 999999999999999999999998853211
Q ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCC-HHHHHHH
Q psy16816 266 -HLHIPSGSFLSLVSALFYSLYIVFLRRLEHEE-KLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPD-RDQWVIL 342 (470)
Q Consensus 266 -~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~-~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~-~~~~~~l 342 (470)
-.....|.+.++.|+++-|--+++.|++++.. ..-...||+.+++.-. .+..... ..+.+|+ .++|..+
T Consensus 185 ~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s------~I~~~~i--g~~~lP~cgkdr~l~ 256 (346)
T KOG4510|consen 185 QVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVS------LIGCASI--GAVQLPHCGKDRWLF 256 (346)
T ss_pred cccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHH------HHHHhhc--cceecCccccceEEE
Confidence 13456789999999999999999999997733 3333567776665322 1222222 2577776 5788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 343 LIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 343 l~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
+.+|+. .++++.+...++++..+--+++..+..+.+|.+++++++|+-++++.|.|+++|+.+.+.+...++.
T Consensus 257 ~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa 329 (346)
T KOG4510|consen 257 VNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWA 329 (346)
T ss_pred EEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHh
Confidence 888997 6788999999999988888888777888889999999999999999999999999999998866544
No 17
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.67 E-value=8.6e-15 Score=143.66 Aligned_cols=173 Identities=13% Similarity=0.108 Sum_probs=122.3
Q ss_pred HHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHH
Q psy16816 196 RFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGS 273 (470)
Q Consensus 196 ~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~ 273 (470)
.++..++|+ +++++++.++++.+++|+|+.+++++++ |||++++++++++++++|++++..++.. . .
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l---~Ek~~~~~~l~~~~~~~Gv~li~~~~~~----~----~ 148 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFL---KERISRFQFIAVIIATLGVISNIVLKGS----L----P 148 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHcCC----c----h
Confidence 444445555 9999999999999999999999999999 9999999999999999999988654211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccCCCHHHHHHHHHHHHHHHHH
Q psy16816 274 FLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEV-FSLPDRDQWVILLIEGLIGSVL 352 (470)
Q Consensus 274 llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~-~~~p~~~~~~~ll~~gil~s~l 352 (470)
+++++++++||.|.+..|+.++.+.. ....+.. ....+..+.... .+..+ ...+....|.++++.|++ +.+
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~g~~-t~i 220 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNTDLA--GFCLETL--SLMPVAIYYLLQ---TDFATVQQTNPFPIWLLLVLAGLI-TGT 220 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcc--hHHHHHH--HHHHHHHHHHHH---hccCcccccCchhHHHHHHHHHHH-HHH
Confidence 46889999999999999888753322 2222111 111111111111 11111 111223478888888987 889
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHH
Q psy16816 353 TETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSL 387 (470)
Q Consensus 353 s~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~ 387 (470)
++.+|++++++.++..++...++..+++++++.+.
T Consensus 221 ~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 221 PLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987665544488887653
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.64 E-value=3.7e-14 Score=142.20 Aligned_cols=216 Identities=11% Similarity=0.064 Sum_probs=164.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHh-hHHHHHHHHHHHhcCCCCCccchhh----HHHHHHHHHH
Q psy16816 181 NIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYS-SSSVLTLLICAFFPSSSSDKFSLSK----CVTVCISVCG 253 (470)
Q Consensus 181 ~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~s-tsPvft~lla~lf~~~~~ek~s~~k----~igvll~~~G 253 (470)
+.++.+..++..+..|...|++|. .+++.++.+..+.+ +.+++..+++.+++ +||.+.++ ++|+++.++|
T Consensus 54 ~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f---~e~~t~~~~~~~~~g~~l~l~G 130 (290)
T TIGR00776 54 WALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVF---GEWSTSIQTLLGLLALILIIIG 130 (290)
T ss_pred cccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHh---hhccchHHHHHHHHHHHHHHHh
Confidence 446788888999999999999999 99999999999999 88999999999999 99999999 9999999999
Q ss_pred hheeeecCccccc----ccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Q psy16816 254 LILVTISDVYMEH----LHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLY--NCLLLWPLFFLLHYNS 327 (470)
Q Consensus 254 Vvli~~~~~~~~~----~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf--~l~~l~p~~~~l~~~~ 327 (470)
++++...+.+... .+...|.+++++|+++|+.|.+..|..+ .++.+..+...+ |.+ +.++..+. ..
T Consensus 131 ~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~-g~~~~~~~~~~~~------~~ 202 (290)
T TIGR00776 131 VYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAI-GMVIGGIIFNLGH------IL 202 (290)
T ss_pred HheEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHH-HHHHHHHHHHHHH------hc
Confidence 9999887644221 2236799999999999999999998764 333433222221 111 11111111 00
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHH----hHHH
Q psy16816 328 WEVFSLPDRDQWVILLIEGLIGSVLTETLWLWGML-LTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFY----VGAV 401 (470)
Q Consensus 328 ~e~~~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~-~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~i----iG~~ 401 (470)
..++ .....|.. +..|++ +.+++.+|+.+.+ +.++..++.... ..|+ +++++++++||+.+..++ +|.+
T Consensus 203 ~~~~--~~~~~~~~-~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~-~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~ 277 (290)
T TIGR00776 203 AKPL--KKYAILLN-ILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQ-LGVIISTLGGILILGEKKTKREMIAISVGII 277 (290)
T ss_pred ccch--HHHHHHHH-HHHHHH-HHHHHHHHHHHcccccchhhHHHHHH-HHHHHHHHHHHHHhccCCCcceeehhHHHHH
Confidence 0112 12233434 448888 7999999999999 888877776554 4466 999999999999999999 9999
Q ss_pred HHHHHHHHHHh
Q psy16816 402 PVVFAFVASIL 412 (470)
Q Consensus 402 lIl~g~~l~~~ 412 (470)
+|+.|..+...
T Consensus 278 lIi~~~~l~~~ 288 (290)
T TIGR00776 278 LIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 19
>KOG1441|consensus
Probab=99.55 E-value=1.3e-14 Score=145.74 Aligned_cols=226 Identities=12% Similarity=0.111 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeec
Q psy16816 183 PQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTIS 260 (470)
Q Consensus 183 ~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~ 260 (470)
+..++..+.+++..+++.++-+ +.|.+++..+++.+++|+|+.++++++. +|+.+...++.++....||.+.+..
T Consensus 80 ~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~---~~~~s~~~~lsL~piv~GV~ias~~ 156 (316)
T KOG1441|consen 80 KLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLL---GKTYSSMTYLSLLPIVFGVAIASVT 156 (316)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHh---CCCCcceEEEEEEEeeeeEEEeeec
Confidence 3344444555555556677777 9999999999999999999999999999 9999999999999999999999997
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHH-HHHHHHhhcccccccC-CCH
Q psy16816 261 DVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLE--HEEKLDIVLFYGFVGLYNCLLLW-PLFFLLHYNSWEVFSL-PDR 336 (470)
Q Consensus 261 ~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~--~~~~~~~~~~~g~vglf~l~~l~-p~~~~l~~~~~e~~~~-p~~ 336 (470)
|... ++.|.+.+++|-+..+...++.+++- ++.+++...++.+.+.++++++. |.....+-...--+.. ++.
T Consensus 157 e~~f----n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~ 232 (316)
T KOG1441|consen 157 ELSF----NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWF 232 (316)
T ss_pred cccc----cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccc
Confidence 7654 49999999999999999999995554 35567776777788888888887 6554322111100011 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 337 DQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 337 ~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
.....++++.+ +...-+..-++.+.+|+|++-+++..+.-.+.++.++++++++.++.+.+|+++.++|+++|++-+.+
T Consensus 233 ~~~~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~ 311 (316)
T KOG1441|consen 233 VTFLILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK 311 (316)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 22444555554 46677888899999999999998887777778889999999999999999999999999999977544
No 20
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.44 E-value=3.3e-11 Score=117.93 Aligned_cols=211 Identities=15% Similarity=0.179 Sum_probs=150.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheee
Q psy16816 181 NIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVT 258 (470)
Q Consensus 181 ~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~ 258 (470)
+.|+.++.+++.+ ++.+.|...+ +++++++..+++..+-.++|++++++++ ++|++.++|+++++-++|++++.
T Consensus 13 ~~~~~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L---~r~ls~~qW~aL~lL~~Gv~lv~ 88 (244)
T PF04142_consen 13 SPKDTLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLL---KRRLSRRQWLALFLLVAGVVLVQ 88 (244)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHH---HcccchhhHHHHHHHHHHHheee
Confidence 3456667765554 5777776666 9999999999999999999999999999 99999999999999999999998
Q ss_pred ecCcccc-------------cccchHHHHHHHHHHHHHHHHHHHH-HHhccCC-chhH-HHHHHHHHHHHHHHHHHHHHH
Q psy16816 259 ISDVYME-------------HLHIPSGSFLSLVSALFYSLYIVFL-RRLEHEE-KLDI-VLFYGFVGLYNCLLLWPLFFL 322 (470)
Q Consensus 259 ~~~~~~~-------------~~~~~~G~llaL~sAl~~Al~~vl~-r~l~~~~-~~~~-~~~~g~vglf~l~~l~p~~~~ 322 (470)
..+.... ..+...|.++.++++++.|+..|.. |.+++.+ +... .+.+++.|++.. ......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~---~~~~~~ 165 (244)
T PF04142_consen 89 LSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFN---LLALLL 165 (244)
T ss_pred cCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH---HHHHhc
Confidence 7655431 1346799999999999999999999 6666532 2211 122233333221 111111
Q ss_pred Hhhccccc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhH
Q psy16816 323 LHYNSWEV---FSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVG 399 (470)
Q Consensus 323 l~~~~~e~---~~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG 399 (470)
........ |+-.+...|..++.+++. -.+..+.+++.+.+.-....+..+.++.+++++++|.+++...++|
T Consensus 166 ~~~~~~~~~g~f~G~~~~~~~~i~~~a~g-----Gllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg 240 (244)
T PF04142_consen 166 SDGSAISESGFFHGYSWWVWIVIFLQAIG-----GLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLG 240 (244)
T ss_pred ccccccccCCchhhcchHHHHHHHHHHHh-----hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhh
Confidence 11111111 222233345555554443 3445577888888888877888889999999999999999999999
Q ss_pred HHHH
Q psy16816 400 AVPV 403 (470)
Q Consensus 400 ~~lI 403 (470)
+++|
T Consensus 241 ~~~V 244 (244)
T PF04142_consen 241 AALV 244 (244)
T ss_pred eecC
Confidence 8764
No 21
>KOG3912|consensus
Probab=99.31 E-value=6.2e-11 Score=114.67 Aligned_cols=212 Identities=16% Similarity=0.234 Sum_probs=156.8
Q ss_pred HHHHHH-hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccc------cccchH
Q psy16816 199 AEYTFT-LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYME------HLHIPS 271 (470)
Q Consensus 199 ~n~~~~-L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~------~~~~~~ 271 (470)
+..+|. |.+|++++.+++....-+||.+++..|+ +++++.++|+|++....|++++...|.+.. .+....
T Consensus 100 sslm~vgL~lTsASsfQMlRGaviIFvglfst~~L---n~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iit 176 (372)
T KOG3912|consen 100 SSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFL---NRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIIT 176 (372)
T ss_pred hHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHH---hcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchh
Confidence 456667 9999999999999999999999999999 999999999999999999999988754321 255789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccCCC---HHHHH-------
Q psy16816 272 GSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWE-VFSLPD---RDQWV------- 340 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e-~~~~p~---~~~~~------- 340 (470)
|+++.+++.+.-|+.+++-.|.-+..++++....|+-|+|.++.+....+.+++.... +|.-.+ ...|.
T Consensus 177 GdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~ 256 (372)
T KOG3912|consen 177 GDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQ 256 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhc
Confidence 9999999999999999999444444567777888999999887777766677665543 343221 12222
Q ss_pred --HHHHHHHHHHHHHHHHHHH-HHHhhchhHHHHHHHhHHH---HHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 341 --ILLIEGLIGSVLTETLWLW-GMLLTSPLIATLGLGLIVP---LSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 341 --~ll~~gil~s~ls~~l~~~-ai~~tspl~~tv~~~l~iP---la~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
..++.++.+..++..++++ ++..|.-.-+|..+.+... +--++++...+|.++..+++|.++.+.|.++++--
T Consensus 257 e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 257 ESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred CCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444555666666665 5555554444444433222 22345666778999999999999999999999843
No 22
>KOG1443|consensus
Probab=99.29 E-value=3.2e-10 Score=111.16 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=149.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHh
Q psy16816 177 STKYNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGL 254 (470)
Q Consensus 177 ~~~l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GV 254 (470)
+..+++++.++..++.++.-.+---+.| ++|++++..|+..+++++|+++|+.+|. -||++|.-+.-+++..+|+
T Consensus 75 r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~---lEk~~w~L~l~v~lI~~Gl 151 (349)
T KOG1443|consen 75 RVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFK---LEKFRWALVLIVLLIAVGL 151 (349)
T ss_pred ccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHH---hHHHHHHHHHHHHHHhhhe
Confidence 3567777777777666654433222333 9999999999999999999999999999 9999999999999999999
Q ss_pred heeeecCcccccccchHHHHHHHHHHHHHHHHHHHHHH-hcc-----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy16816 255 ILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRR-LEH-----EEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSW 328 (470)
Q Consensus 255 vli~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r~-l~~-----~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~ 328 (470)
+++++...+. ...|..+.++|+++.|+.-.+.+. +.+ +.+.++..... ....+.+.|.....+-.+.
T Consensus 152 flft~KsTqf----~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~---p~M~~~Ll~~~l~fEG~~~ 224 (349)
T KOG1443|consen 152 FLFTYKSTQF----NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQ---PWMSIGLLPLSLLFEGLHL 224 (349)
T ss_pred eEEEecccce----eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhh---hHHHHHHHHHHHHHccccc
Confidence 9999877664 488999999998888886666633 222 12333322221 1112223444433322111
Q ss_pred ---cc-ccCCC-HHHH---HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHH
Q psy16816 329 ---EV-FSLPD-RDQW---VILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGA 400 (470)
Q Consensus 329 ---e~-~~~p~-~~~~---~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~ 400 (470)
++ |...+ ...+ ..+..-|+.+ ++-.+.=+....+|+.++.++..-.......+++.++.+++++...|+|.
T Consensus 225 ~~~s~~f~~~d~~~~~rv~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl 303 (349)
T KOG1443|consen 225 ITSSSIFRFQDTGLILRVIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGL 303 (349)
T ss_pred chhhhHHHhcCccHHHHHHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 11 22211 1222 2333333332 22122223455678888877766666666889999999999999999999
Q ss_pred HHHHHHHHHH
Q psy16816 401 VPVVFAFVAS 410 (470)
Q Consensus 401 ~lIl~g~~l~ 410 (470)
++.+.|+...
T Consensus 304 ~i~~agi~~~ 313 (349)
T KOG1443|consen 304 AICLAGILLH 313 (349)
T ss_pred HHHHHHHHHh
Confidence 9999999988
No 23
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.28 E-value=5.4e-10 Score=106.98 Aligned_cols=222 Identities=18% Similarity=0.128 Sum_probs=160.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhh
Q psy16816 177 STKYNIPQVAKVAFVFSFLRFGAEYTFT-LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLI 255 (470)
Q Consensus 177 ~~~l~~~~~~~l~~~~~~l~~~~n~~~~-L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVv 255 (470)
+.+++.++...+..+...+-.+...||. ++..|.+.+..+-.+-|+.+.+++ .+| .+..+-+.+.+.|+.
T Consensus 63 r~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~-------sRr--~~d~vwvaLAvlGi~ 133 (292)
T COG5006 63 RRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS-------SRR--LRDFVWVALAVLGIW 133 (292)
T ss_pred HhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh-------ccc--hhhHHHHHHHHHHHH
Confidence 3456666666666666655555445555 999999999999999998776655 233 445666778888988
Q ss_pred eeeecCcccccccchHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q psy16816 256 LVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEH-EEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLP 334 (470)
Q Consensus 256 li~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~-~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p 334 (470)
++.-..... ......|..+++.++.|||.|.+.-+|.++ ++... ..-.| ...+.++..|+.+.. .+ + ...
T Consensus 134 lL~p~~~~~-~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~-g~a~g--m~vAaviv~Pig~~~--ag--~-~l~ 204 (292)
T COG5006 134 LLLPLGQSV-WSLDPVGVALALGAGACWALYIVLGQRAGRAEHGTA-GVAVG--MLVAALIVLPIGAAQ--AG--P-ALF 204 (292)
T ss_pred hheeccCCc-CcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCch-HHHHH--HHHHHHHHhhhhhhh--cc--h-hhc
Confidence 877554332 255689999999999999999999988874 32221 11122 222334445544321 11 1 222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 335 DRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 335 ~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
++.....-+..|++++.+.|.+=..++.+..+-+-++.+++..-++.+.+++++||.+|+.||+|.+.|+.+..-..+..
T Consensus 205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence 34455666778999999999999999999888888778887766699999999999999999999999999988777664
Q ss_pred cc
Q psy16816 415 QM 416 (470)
Q Consensus 415 ~~ 416 (470)
++
T Consensus 285 ~~ 286 (292)
T COG5006 285 RK 286 (292)
T ss_pred CC
Confidence 33
No 24
>KOG2766|consensus
Probab=99.26 E-value=3.9e-13 Score=128.24 Aligned_cols=211 Identities=18% Similarity=0.260 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccc---
Q psy16816 191 VFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYME--- 265 (470)
Q Consensus 191 ~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~--- 265 (470)
.+++.-.-+||+-. .+||+..+++.|-+-.-..+++++|+|+ |.|..+.|+.||++|++||+++...|.+..
T Consensus 83 lla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fL---ktrYrlmki~gV~iCi~GvvmvV~sDV~agd~a 159 (336)
T KOG2766|consen 83 LLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFL---KTRYRLMKISGVVICIVGVVMVVFSDVHAGDRA 159 (336)
T ss_pred heeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHH---HHHHhhheeeeEEeEecceEEEEEeeecccccc
Confidence 33344445777666 9999999999999999889999999999 999999999999999999999998886542
Q ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHH
Q psy16816 266 -HLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLI 344 (470)
Q Consensus 266 -~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~ 344 (470)
+.+...||++.+++|-+||+-++....+.+ +.+.+-++|++|+|..+....- ++....+....++. .....++ .
T Consensus 160 ggsnp~~GD~lvi~GATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~-~~i~~yl-~ 234 (336)
T KOG2766|consen 160 GGSNPVKGDFLVIAGATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWD-SAIFLYL-R 234 (336)
T ss_pred CCCCCccCcEEEEecceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeeh-HHHHHHH-H
Confidence 456789999999999999999999954444 3455556677777766543222 22222222222221 1122222 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 345 EGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 345 ~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
..++-++-|.+....++.+++...+++. ++.-+ +.+. -.+|-+.+|.+++..+.+..|++++...
T Consensus 235 -f~L~MFllYsl~pil~k~~~aT~~nlsl-LTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 235 -FALTMFLLYSLAPILIKTNSATMFNLSL-LTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred -HHHHHHHHHHhhHHheecCCceEEEhhH-hHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 2333455555555566666666555543 33333 5555 5577889999999999999999998543
No 25
>KOG2234|consensus
Probab=99.24 E-value=2.8e-09 Score=107.07 Aligned_cols=213 Identities=18% Similarity=0.269 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeec
Q psy16816 183 PQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTIS 260 (470)
Q Consensus 183 ~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~ 260 (470)
+++++.+++. ++|.+.|.+++ +.+.++++.++....--+.|+++..+++ ++|+++++|.++++-++|++++-.+
T Consensus 90 ~~~lk~~vPa-~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L---~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 90 RETLKVSVPA-LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLIL---RRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHHHHHHH-HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 4677777655 47888886666 9999999999999999999999999999 9999999999999999999999833
Q ss_pred Ccc-------cccccchHHHHHHHHHHHHHHHHHHHH-HHhccC-Cch---hHHHHHHHHHH-HHHHHHHHHHHHHhhcc
Q psy16816 261 DVY-------MEHLHIPSGSFLSLVSALFYSLYIVFL-RRLEHE-EKL---DIVLFYGFVGL-YNCLLLWPLFFLLHYNS 327 (470)
Q Consensus 261 ~~~-------~~~~~~~~G~llaL~sAl~~Al~~vl~-r~l~~~-~~~---~~~~~~g~vgl-f~l~~l~p~~~~l~~~~ 327 (470)
... ....+.+.|....+.+++..+...+.. |.+++. ... +++++ +.|. |+++..+ ..+
T Consensus 166 ~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~--~~g~~f~~l~~~-------~~d 236 (345)
T KOG2234|consen 166 SLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLY--FFGILFNLLTIL-------LQD 236 (345)
T ss_pred CCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHHHHHHHHHh-------hcc
Confidence 211 114567899999999999999999999 544432 122 23333 3343 2222211 111
Q ss_pred ccc------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHH
Q psy16816 328 WEV------FSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAV 401 (470)
Q Consensus 328 ~e~------~~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~ 401 (470)
.+. |+-.+...|..++.+|+-|-. ..+.+++.+-+.-.-..++.+.++.+.++.+++-+++....+|+.
T Consensus 237 ~~~i~~~gff~G~s~~vw~vVl~~a~gGLl-----vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~ 311 (345)
T KOG2234|consen 237 GEAINEYGFFYGYSSIVWLVVLLNAVGGLL-----VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGAL 311 (345)
T ss_pred ccccccCCccccccHHHHHHHHHHhccchh-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 221 233344677777777764333 334555555555555556778888888999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy16816 402 PVVFAFVASILL 413 (470)
Q Consensus 402 lIl~g~~l~~~~ 413 (470)
+|+.++.+++..
T Consensus 312 lVi~Si~lY~~~ 323 (345)
T KOG2234|consen 312 LVILSIFLYSLY 323 (345)
T ss_pred HHHHHHHHhhcC
Confidence 999999999944
No 26
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.09 E-value=3e-09 Score=95.75 Aligned_cols=140 Identities=24% Similarity=0.326 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--c-----CC-CHHH
Q psy16816 272 GSFLSLVSALFYSLYIVFLRRLEHE-----EKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVF--S-----LP-DRDQ 338 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~r~l~~~-----~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~--~-----~p-~~~~ 338 (470)
|.+++++|.++.|++.++.|+.-++ .+.+....+.+.+..+.+++.|..++.+....... . .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7889999999999999999554333 45555555566677777777777766655442221 1 11 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHh
Q psy16816 339 WVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASIL 412 (470)
Q Consensus 339 ~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~ 412 (470)
+..++..|++ ..+.++..++.+++++|++.++...+..++.++.+++++||++++.+++|.++.++|+++|+|
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 7777888887 566789999999999999999999999999999999999999999999999999999998874
No 27
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.09 E-value=3.3e-08 Score=96.97 Aligned_cols=204 Identities=15% Similarity=0.192 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHH---hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCccccccc
Q psy16816 192 FSFLRFGAEYTFT---LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLH 268 (470)
Q Consensus 192 ~~~l~~~~n~~~~---L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~ 268 (470)
.+..-...||.-+ ..+-.+-.++.=.+.+|++..+++.+|+ |||+++.|+++++++.+||.......++.
T Consensus 77 l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lfl---kErls~~Q~iAV~lA~~GV~~~~~~~g~l---- 149 (293)
T COG2962 77 LTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFL---KERLSRLQWIAVGLAAAGVLIQTWLLGSL---- 149 (293)
T ss_pred HHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHcCCC----
Confidence 3333444565555 7777888899999999999999999999 99999999999999999999887665542
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH-HHHhhccccc-c-cCCCHHHHHHHHHH
Q psy16816 269 IPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLF-FLLHYNSWEV-F-SLPDRDQWVILLIE 345 (470)
Q Consensus 269 ~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~-~~l~~~~~e~-~-~~p~~~~~~~ll~~ 345 (470)
.+. ++.=|++|+.|..+=|+++-+ ...-+..-.+ .+.|.. ..+.+..-++ + .......+..++..
T Consensus 150 pwv----al~la~sf~~Ygl~RK~~~v~----a~~g~~lE~l----~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~a 217 (293)
T COG2962 150 PWV----ALALALSFGLYGLLRKKLKVD----ALTGLTLETL----LLLPVALIYLLFLADSGQFLQQNANSLWLLLVLA 217 (293)
T ss_pred cHH----HHHHHHHHHHHHHHHHhcCCc----hHHhHHHHHH----HHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHh
Confidence 244 566688999999777776542 2222222221 122222 1111221111 1 21344677888888
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 346 GLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 346 gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
|++ |.+.-.++..+-++.+=.+..... +..|. -.+++++++||+++..+++..+.|-.|..++..+..+
T Consensus 218 G~v-TavpL~lf~~aa~~lpls~~G~lq-Yi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~ 287 (293)
T COG2962 218 GLV-TAVPLLLFAAAAKRLPLSTLGFLQ-YIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY 287 (293)
T ss_pred hHH-HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 888999999999987766666555 45566 8889999999999999999999999999999977543
No 28
>KOG1580|consensus
Probab=99.05 E-value=1.5e-09 Score=102.89 Aligned_cols=209 Identities=16% Similarity=0.166 Sum_probs=156.8
Q ss_pred HHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCccc---cccc
Q psy16816 194 FLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYM---EHLH 268 (470)
Q Consensus 194 ~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~---~~~~ 268 (470)
.-+.++....| ++|.+-.+..+=.++-|+=++++++++. +++.+|+|...+++.++||++..+.+... .++.
T Consensus 93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~---~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t 169 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFA---HKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKT 169 (337)
T ss_pred HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhh---cccccHHHHHHHHHHHHHHHHhhccccccCCCcccc
Confidence 34455556666 9999999999999999999999999999 99999999999999999999998875432 2355
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcc-CCch--hHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----ccCCCHHHHH
Q psy16816 269 IPSGSFLSLVSALFYSLYIVFLRRLEH-EEKL--DIVLFYGFVGLYNCLLLWPLFFLLHYNSWEV-----FSLPDRDQWV 340 (470)
Q Consensus 269 ~~~G~llaL~sAl~~Al~~vl~r~l~~-~~~~--~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~-----~~~p~~~~~~ 340 (470)
...|.++.++|-..-++....+.+++. ..+. .|.++.. +.+.+.+-.+ +.++| |. |..-.+..|.
T Consensus 170 ~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~N---lwStL~Lg~g---~lfTG-ElweF~yF~~RhP~~~~ 242 (337)
T KOG1580|consen 170 FGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTN---LWSTLYLGAG---LLFTG-ELWEFFYFVQRHPYVFW 242 (337)
T ss_pred cchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHH---HHHHHHhhhh---heehh-hHHHHHHHHHhccHHHH
Confidence 789999999999999999998844433 2222 3333322 2222222211 12232 22 2223446677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 341 ILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 341 ~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
-+...|+. +.+++++.+.-+..-+|++.++....---++++.++++++++++..||+|.++++.+...-...
T Consensus 243 ~l~l~ai~-s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 243 DLTLLAIA-SCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred HHHHHHHH-HHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 78888885 8899999999999999998876655555668999999999999999999999999998776544
No 29
>KOG1444|consensus
Probab=98.98 E-value=2.3e-08 Score=99.31 Aligned_cols=217 Identities=17% Similarity=0.188 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCc
Q psy16816 185 VAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDV 262 (470)
Q Consensus 185 ~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~ 262 (470)
++|.-++..+++.+..+.-. ++|.+++..+++.+.+|++|++....|+ +.|++..-+.++.+.++|......+|.
T Consensus 76 ~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~---~~~~~~~v~~Sv~~m~~~s~~~~~~d~ 152 (314)
T KOG1444|consen 76 TAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFF---GKRPSNKVWASVFAMIIGSVAAAFTDL 152 (314)
T ss_pred HHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhc---CcCchhhHHHHHHHHHHHHHhhccccc
Confidence 34444455555554444433 9999999999999999999999999999 999999999999999999999988887
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHhccCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc--ccc---C
Q psy16816 263 YMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEE---KLDIVLFYGFVGLYNCLLLWPLFFLLHYNS-WE--VFS---L 333 (470)
Q Consensus 263 ~~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~---~~~~~~~~g~vglf~l~~l~p~~~~l~~~~-~e--~~~---~ 333 (470)
..+ ..|-.+++...++-+.+.+..|+..+.. +.++..|=.+..+ .|.......+| +. .++ +
T Consensus 153 sf~----~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L------~~l~~~~~~~ge~~~l~~~~~~~ 222 (314)
T KOG1444|consen 153 SFN----LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSL------PPLLILSFITGELDALSLNFDNW 222 (314)
T ss_pred eec----chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHH------HHHHHHHHHhcchHHHHhhcccc
Confidence 653 5699999999999999999996655432 2333333222222 11111111222 10 122 2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHh
Q psy16816 334 PDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASIL 412 (470)
Q Consensus 334 p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~ 412 (470)
+....|..+...|+++.++ .++-.++...+++++-++.. ...-+ ..+..++++++++++..++|..+=+.|-+++++
T Consensus 223 ~~~~~~~~~~lScv~gf~i-sy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 223 SDSSVLVVMLLSCVMGFGI-SYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred cchhHHHHHHHHHHHHHHH-HHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 3346788888889986655 67777899999998877666 44444 777888889999999999999999999999998
Q ss_pred hhcc
Q psy16816 413 LAQM 416 (470)
Q Consensus 413 ~~~~ 416 (470)
...+
T Consensus 301 ~~~~ 304 (314)
T KOG1444|consen 301 ATFR 304 (314)
T ss_pred hhhh
Confidence 7544
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.89 E-value=1.9e-08 Score=86.33 Aligned_cols=124 Identities=20% Similarity=0.313 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16816 281 LFYSLYIVFLRRLEHE-EKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLWLW 359 (470)
Q Consensus 281 l~~Al~~vl~r~l~~~-~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~ls~~l~~~ 359 (470)
++||.+.+..|+..++ +......+-...+. + +.+...... .++...++...+..+++.|++++.+++.+|++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAG---I-LLILLLILG---RKPFKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHH---H-HHHHHHhhc---cccccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 4688999999776553 33333332222222 2 222222211 11123334566778888888888999999999
Q ss_pred HHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 360 GMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 360 ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
+++++++..++....+..+++.++++++++|++++.+++|.++++.|.++++
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999987776655599999999999999999999999999999875
No 31
>KOG1442|consensus
Probab=98.75 E-value=1e-09 Score=106.02 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=156.9
Q ss_pred hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHHHHHH
Q psy16816 205 LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYS 284 (470)
Q Consensus 205 L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~A 284 (470)
|+|.+++.-.+=.+..-+|+.++.++++ ++|-+..-..+.++.+.|..+=...++.. +...+.|.+++..|.++-|
T Consensus 123 L~yVgVaFYyvgRsLttvFtVlLtyvll---kqkTs~~~~~~C~lIi~GF~lGvdqE~~~-~~ls~~GvifGVlaSl~vA 198 (347)
T KOG1442|consen 123 LKYVGVAFYYVGRSLTTVFTVLLTYVLL---KQKTSFFALGCCLLIILGFGLGVDQEGST-GTLSWIGVIFGVLASLAVA 198 (347)
T ss_pred hhhcceEEEEeccchhhhHHHHhHHhhc---ccccccccceeehhheehheecccccccc-CccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999999987766655443 3567999999999999999
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16816 285 LYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNS-WEVF-SLPDRDQWVILLIEGLIGSVLTETLWLWGML 362 (470)
Q Consensus 285 l~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~-~e~~-~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~ 362 (470)
+..+..|+.-....-.+-.+-.+-.++++++..|.+.+.+..+ +-.| +.|....|..+.+.|+++..+ .+.-.|-++
T Consensus 199 lnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~m-gyvTg~QIK 277 (347)
T KOG1442|consen 199 LNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAM-GYVTGWQIK 277 (347)
T ss_pred HHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHh-hheeeEEEE
Confidence 9999997554311111222233455666777778776654332 1112 334567888888889886665 466667888
Q ss_pred hhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 363 LTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 363 ~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
-|||++=.+...-....-.++++.+++|.-+..-|-|-++|+.|-..+++-++.
T Consensus 278 ~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~ 331 (347)
T KOG1442|consen 278 VTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEH 331 (347)
T ss_pred ecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHH
Confidence 899997655544444445667888999999999999999999999999987544
No 32
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.74 E-value=7.1e-08 Score=83.62 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccCC---CHHHHHHHHHHHH
Q psy16816 272 GSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFY-GFVGLYNCLLLWPLFFLLHYNSWEVFSLP---DRDQWVILLIEGL 347 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~-g~vglf~l~~l~p~~~~l~~~~~e~~~~p---~~~~~~~ll~~gi 347 (470)
..+++++||+++++..++-|.--+.-+-+...+. ..+.+ .+++. +.... .+++.+ +++.|..++..|+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~---~~l~~---v~~~~--g~~~~~~~~~~k~~lflilSGl 75 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVIL---IFLLI---VLLVT--GNWQAGGEIGPKSWLFLILSGL 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHH---HHHHH---HHHhc--CceecccccCcceehhhhHHHH
Confidence 4688999999999999988654331111222221 22222 11111 11222 234444 5688999999996
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 348 IGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 348 l~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
++.++.++|++|++...+..+.-.-.....+++++++++++|+++..+++|.++|.+|.+++.
T Consensus 76 -a~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 76 -AGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred -HHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 589999999999999887766544445555599999999999999999999999999988765
No 33
>KOG1582|consensus
Probab=98.69 E-value=1.3e-06 Score=84.79 Aligned_cols=306 Identities=10% Similarity=0.071 Sum_probs=203.3
Q ss_pred hhhhhhhhHHHhhHHHHHHHHHhhhhhHHHHHHHhccCCCCCccccCCCCCCcccccchhhhhhhhhhhhhhhhhhhccc
Q psy16816 16 NVLLSRFQRHALGCFVLILVDILWALSSEIVKKVDQHVEDESYFTDQTEPPGELKFPLHNLFIQVFLLVSIKKLQSASRG 95 (470)
Q Consensus 16 ~~~~~~~~r~~~G~~ll~~v~~~Wv~S~~l~~~if~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 95 (470)
.--+.+.-||+-=+++-.-|-++...-+.+-++||+-+.-+|| -++-|..+..+|.-..+.+...
T Consensus 32 g~~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~-------------GWylTlvQf~~Ysg~glie~~~-- 96 (367)
T KOG1582|consen 32 GFNLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPF-------------GWYLTLVQFLVYSGFGLIELQL-- 96 (367)
T ss_pred eeccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCccc-------------chHHHHHHHHHHHhhhheEEEe--
Confidence 3345666788877778888888899999999999996555666 2333444444443333222100
Q ss_pred CccccccccCCCCCCCccccccchhccccccccCccccCCCcccccccccccCChhhHHHHHHHhhhHHHhhhhcccccc
Q psy16816 96 LHGKVLFSGRSSGTESETENSMRKHVRFSKLTERPQVLGVPASFLMEAPVRHLSDKEANEALLARLSYQATLRTADFTFI 175 (470)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 175 (470)
-+.
T Consensus 97 -----------------------------------------------------------------------------~~~ 99 (367)
T KOG1582|consen 97 -----------------------------------------------------------------------------IQT 99 (367)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 001
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHH
Q psy16816 176 QSTKYNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCG 253 (470)
Q Consensus 176 ~~~~l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~G 253 (470)
+++.+++|...++++.... +.-..+ +.|++-....+..+|--+=+++-+.++. +.|..+....+..+-.+|
T Consensus 100 k~r~iP~rtY~~la~~t~g----tmGLsn~SlgYLNYPtQviFKccKliPVmiggifIq---GkRY~v~d~~aA~lm~lG 172 (367)
T KOG1582|consen 100 KRRVIPWRTYVILAFLTVG----TMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQ---GKRYGVHDYIAAMLMSLG 172 (367)
T ss_pred cceecchhHhhhhHhhhhh----ccccCcCccccccCcHHHHHHhhhhhhhhheeeeec---cccccHHHHHHHHHHHHH
Confidence 1233456666666654433 333333 7888888888888888888888999988 899999999999999999
Q ss_pred hheeeecCcccccccchHHHHHHHHHHHHHHHHHHHH-HHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--c
Q psy16816 254 LILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFL-RRLEH--EEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNS--W 328 (470)
Q Consensus 254 Vvli~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~-r~l~~--~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~--~ 328 (470)
+++.+..|.+.+.+-+.+|..+.-++-++-|+--.++ +..+. ++...+.++-.-+|+. .++.|.. .+| +
T Consensus 173 li~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~v--flf~~mv----lTge~f 246 (367)
T KOG1582|consen 173 LIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFV--FLFAPMV----LTGELF 246 (367)
T ss_pred HHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHH--HHHHHHH----hcccch
Confidence 9999999998777888999999999999999988888 44332 3444554443333331 1112221 122 1
Q ss_pred ccc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHH
Q psy16816 329 EVF---SLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVF 405 (470)
Q Consensus 329 e~~---~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~ 405 (470)
..| .-++.+.+.+.+..+.. +.++.-+..-.++.-++.+++.....---++++++++++..+++..+.-|..+|+.
T Consensus 247 ~a~~fcaehp~~tyGy~~~~s~~-gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~l 325 (367)
T KOG1582|consen 247 SAWTFCAEHPVRTYGYAFLFSLA-GYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVL 325 (367)
T ss_pred hhhHHHHhCcHhHHHHHHHHHHH-hHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHH
Confidence 111 11223445555555543 45555555556666666666555555567788999999999999999999999999
Q ss_pred HHHHHHhhhccccCChhhhhhhhh
Q psy16816 406 AFVASILLAQMASRDPVLEILLSC 429 (470)
Q Consensus 406 g~~l~~~~~~~~~~d~~~~~~~~~ 429 (470)
|+++-.+++ .++.|..+..+|+
T Consensus 326 gI~Ln~ysk--~nk~~~~~~~~r~ 347 (367)
T KOG1582|consen 326 GIYLNMYSK--RNKIPLASLIRRI 347 (367)
T ss_pred HHHhhcccC--CCCCchhhHHhhh
Confidence 999988775 3455655555555
No 34
>KOG1581|consensus
Probab=98.63 E-value=3.7e-06 Score=82.98 Aligned_cols=213 Identities=14% Similarity=0.104 Sum_probs=158.3
Q ss_pred HHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccc-----cccchH
Q psy16816 199 AEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYME-----HLHIPS 271 (470)
Q Consensus 199 ~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~-----~~~~~~ 271 (470)
+.++-. |+|.|-...++-.++--+-+++.+.++. ++|.+..+.+...+.-.|+.+-+..+.+++ +.+..+
T Consensus 96 s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy---~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~ 172 (327)
T KOG1581|consen 96 SSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVY---GRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPI 172 (327)
T ss_pred chHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHh---cCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchH
Confidence 344444 9999999999999999999999999999 999999999999999999998887654431 356789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccCCCHHHHHHHHHHHHHH
Q psy16816 272 GSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEV--FSLPDRDQWVILLIEGLIG 349 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~--~~~p~~~~~~~ll~~gil~ 349 (470)
|.++....-++-++-+..+.++-+..+++...++..+-+|..+.- ....+......++ |---++..+.-++..+.+
T Consensus 173 G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~-~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~- 250 (327)
T KOG1581|consen 173 GILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILN-GTYLILQGHLLPAVSFIKEHPDVAFDILLYSTC- 250 (327)
T ss_pred hHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHH-HHhhhcCCCCchHHHHHHcChhHHHHHHHHHHh-
Confidence 999999999999999999944444445433222222333332221 1112222222222 222234566677777776
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 350 SVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 350 s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
..+++.+.++-+.+-+|++-+..+..---++++++.+.+|.+.++.|++|..+++.|..+=.+.+++
T Consensus 251 gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 251 GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 5678999999999999998887777677779999999999999999999999999999988876544
No 35
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.60 E-value=3.2e-07 Score=88.22 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=121.5
Q ss_pred cchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCccc-----------------------
Q psy16816 208 AEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYM----------------------- 264 (470)
Q Consensus 208 tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~----------------------- 264 (470)
.++.......+..++++++.++.+. ++|.+..|++++++...|++.....+.+.
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~---~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~ 78 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAA---GKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTL 78 (222)
T ss_pred ccccchHHHHhcchHHHHHhccccc---ceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccc
Confidence 4566778888999999999999988 89999999999999999987533332210
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----c-ccCCCHHH
Q psy16816 265 EHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWE-----V-FSLPDRDQ 338 (470)
Q Consensus 265 ~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e-----~-~~~p~~~~ 338 (470)
..++.+.|....+.++++-+...+...+..+..+.. .+...+.+........ .......+.+ + +.-.+...
T Consensus 79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~--~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (222)
T TIGR00803 79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM--FWSRNLQLPLFGLFST-FSVLLWSDGTLISNFGFFIGYPTAV 155 (222)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc--hHHHHHHHHHHHHHHH-HHHHhhcccchhhccCcccCCchHH
Confidence 113456777777778877777777775544422111 1111111110000000 0001111111 1 11112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHH
Q psy16816 339 WVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVA 409 (470)
Q Consensus 339 ~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l 409 (470)
|..++. ..+...+..+.+++.++.+.+........++.+++++++|++++..+++|+.+++.|.++
T Consensus 156 ~~~~~~-----~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLL-----NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHH-----HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 333222 334456788899999999888877777777999999999999999999999999998765
No 36
>KOG1583|consensus
Probab=98.56 E-value=8.6e-08 Score=93.07 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=146.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhh
Q psy16816 177 STKYNIPQVAKVAFVFSFLRFGAEYTFTLLG-AEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLI 255 (470)
Q Consensus 177 ~~~l~~~~~~~l~~~~~~l~~~~n~~~~L~~-tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVv 255 (470)
+.+++.|++++....|...-..-|+. +++ .+...-.++.+-+++-++++++++. ++|.+.+|..++++.-+|++
T Consensus 59 k~kiplk~Y~i~V~mFF~vnv~NN~a--l~f~I~~PlHiIfRsgsll~nM~~g~il~---~k~Ys~~Qy~Sv~~iTiGii 133 (330)
T KOG1583|consen 59 KPKIPLKDYAITVAMFFIVNVTNNYA--LKFNIPMPLHIIFRSGSLLANMILGWILL---GKRYSLRQYSSVLMITIGII 133 (330)
T ss_pred CCCCchhhhheehheeeeeeeeccce--eeecccceEEEEEecCcHHHHHHHHHHhc---cceeehhhhhhHHhhhhhhe
Confidence 37888998888876554433333433 333 6667777888999999999999999 99999999999999999999
Q ss_pred eeeecCcccc---------------cccchHHHHHHHHHHHHHHHHHHHH----HHhccCCchhHHHHH-HHHHHHHHHH
Q psy16816 256 LVTISDVYME---------------HLHIPSGSFLSLVSALFYSLYIVFL----RRLEHEEKLDIVLFY-GFVGLYNCLL 315 (470)
Q Consensus 256 li~~~~~~~~---------------~~~~~~G~llaL~sAl~~Al~~vl~----r~l~~~~~~~~~~~~-g~vglf~l~~ 315 (470)
+-+.....+. ...+.+|+.+..++-+..|.-.+.+ ||.++. .+-.+|+ -+..
T Consensus 134 IcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh--~~EalFytH~Ls------ 205 (330)
T KOG1583|consen 134 ICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH--WKEALFYTHFLS------ 205 (330)
T ss_pred eEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHhc------
Confidence 9876543211 1235678777777766666655554 555542 2222333 2322
Q ss_pred HHHHHHHHh------h---cccccccCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHH
Q psy16816 316 LWPLFFLLH------Y---NSWEVFSLPD-----RDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSM 381 (470)
Q Consensus 316 l~p~~~~l~------~---~~~e~~~~p~-----~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~ 381 (470)
.|.+.+++ + ...|++..|. +..|.+++.+.+. ..++.--.+..-..++++++|+...+---++.
T Consensus 206 -LP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~-Qy~CikgVy~L~te~~sLTVTlvltlRKFvSL 283 (330)
T KOG1583|consen 206 -LPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLT-QYFCIKGVYILTTETSSLTVTLVLTLRKFVSL 283 (330)
T ss_pred -cchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHH-HHHHHHhhhhhhceecceEEEEeeeHHHHHHH
Confidence 23332221 1 1124333332 4677777776553 22222222222334666667666656666799
Q ss_pred HHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 382 IANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 382 i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
+++.+.+.+++++..|+|+++++.|-+++.-.
T Consensus 284 l~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 284 LFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred hheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998844
No 37
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.45 E-value=2.1e-05 Score=77.68 Aligned_cols=217 Identities=15% Similarity=0.181 Sum_probs=147.9
Q ss_pred CCCCh-HHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhH-HHHHHHHHHHhcCCCCCccchhh----HHHHHH
Q psy16816 178 TKYNI-PQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSS-SVLTLLICAFFPSSSSDKFSLSK----CVTVCI 249 (470)
Q Consensus 178 ~~l~~-~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~sts-Pvft~lla~lf~~~~~ek~s~~k----~igvll 249 (470)
..++. ...+..++.-+.+|.+.+..-+ .++..+|.+.-++.-. -+.+.+++++++ +|--+... .+++++
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~f---gEW~~~~~~~~G~~Al~l 112 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFF---GEWTTTTQKIIGFLALVL 112 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhc---CCCCCcchHHHHHHHHHH
Confidence 34443 4678888899999999998777 8888888888887644 566888999988 88766554 458899
Q ss_pred HHHHhheeeecCcccc----cccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16816 250 SVCGLILVTISDVYME----HLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHY 325 (470)
Q Consensus 250 ~~~GVvli~~~~~~~~----~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~ 325 (470)
.++|+++.+..|.... ..+...|.+..+++.+.|..|.++.|..+ .+..+..+-. .+|.+...+. ....
T Consensus 113 iiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~-~~~~~~~lPq-aiGm~i~a~i-----~~~~ 185 (269)
T PF06800_consen 113 IIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFH-VSGWSAFLPQ-AIGMLIGAFI-----FNLF 185 (269)
T ss_pred HHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcC-CChhHhHHHH-HHHHHHHHHH-----Hhhc
Confidence 9999999998876643 23456799999999999999999987644 2344443333 2333211111 1111
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHH----HHhHHH
Q psy16816 326 NSWEVFSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRL----FYVGAV 401 (470)
Q Consensus 326 ~~~e~~~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~----~iiG~~ 401 (470)
...+.++ ...|.. +..|++ ..++++++..+....+..++-...-+.+.++.+.+++++||+=+.. .++|.+
T Consensus 186 ~~~~~~~---k~~~~n-il~G~~-w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~ 260 (269)
T PF06800_consen 186 SKKPFFE---KKSWKN-ILTGLI-WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLI 260 (269)
T ss_pred ccccccc---cchHHh-hHHHHH-HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHH
Confidence 1111121 122333 445665 6778888988888766655544444677779999999999987744 567888
Q ss_pred HHHHHHHH
Q psy16816 402 PVVFAFVA 409 (470)
Q Consensus 402 lIl~g~~l 409 (470)
+|++|.++
T Consensus 261 Liv~G~il 268 (269)
T PF06800_consen 261 LIVIGAIL 268 (269)
T ss_pred HHHHhhhc
Confidence 88887654
No 38
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.40 E-value=1.1e-06 Score=75.77 Aligned_cols=62 Identities=29% Similarity=0.377 Sum_probs=55.4
Q ss_pred HHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcc
Q psy16816 198 GAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVY 263 (470)
Q Consensus 198 ~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~ 263 (470)
..+.+|. +++++ +.++++.+++|+|+.+++++++ |||++++++++++++++|++++..++..
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~---~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFF---KERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3444444 99999 6899999999999999999999 9999999999999999999999988765
No 39
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.27 E-value=3.7e-05 Score=76.57 Aligned_cols=134 Identities=15% Similarity=0.065 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHH
Q psy16816 273 SFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVL 352 (470)
Q Consensus 273 ~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~l 352 (470)
.++.++++++||.+.++.|+..+.+ .....++.. +..+++.|.... ... ...+..+....|..++..+ ++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~~~~~~~~---~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 75 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE-PDFLWWALL---AHSVLLTPYGLW-YLA-QVGWSRLPATFWLLLAISA-VANMV 75 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch-hHHHHHHHH---HHHHHHHHHHHH-hcc-cCCCCCcchhhHHHHHHHH-HHHHH
Confidence 4688999999999999998665432 222333322 223344443321 100 1123333334444444444 45677
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 353 TETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 353 s~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
.+.++.++++++++..++...+...+++++++++++||+++..+++|.++++.|++++..+
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999988887776664449999999999999999999999999999988754
No 40
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.26 E-value=2.1e-05 Score=79.35 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=112.5
Q ss_pred hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHH---------
Q psy16816 205 LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFL--------- 275 (470)
Q Consensus 205 L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~ll--------- 275 (470)
+.+.|++.++-+.+.+-++..+++..++ +||++++.++|++++++|.+++.....+..+.. ..-.+.
T Consensus 71 l~~ap~slv~Plg~~~lv~~~~~a~~~l---~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~-t~~~l~~~~~~~~fl 146 (300)
T PF05653_consen 71 LGFAPASLVAPLGALSLVFNAVLARFFL---GEKLTRRDIVGCALIILGSVLIVIFAPKEEPIH-TLDELIALLSQPGFL 146 (300)
T ss_pred HHhhhHHHHHHHHhhhhhhHHHHhHHHh---cccchHhHHhhHHHHHhhheeeEEeCCCCCCcC-CHHHHHHHhcCccee
Confidence 8999999999999999999999999999 999999999999999999998876543322111 011111
Q ss_pred ---HHHHHHHHHHHHHHHHHhccCCchhHHHHH---HHHHHHHHHHHHHHHHHH--hhcccccccCCCHHHHHHHHHHHH
Q psy16816 276 ---SLVSALFYSLYIVFLRRLEHEEKLDIVLFY---GFVGLYNCLLLWPLFFLL--HYNSWEVFSLPDRDQWVILLIEGL 347 (470)
Q Consensus 276 ---aL~sAl~~Al~~vl~r~l~~~~~~~~~~~~---g~vglf~l~~l~p~~~~l--~~~~~e~~~~p~~~~~~~ll~~gi 347 (470)
.+...+...+.....++.++ .++..+. +.+|.++.+..=.....+ ...|-. ....+..|..++...
T Consensus 147 ~y~~~~~~~~~~L~~~~~~r~g~---~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~--~f~~~~~y~l~~~~v- 220 (300)
T PF05653_consen 147 VYFILVLVLILILIFFIKPRYGR---RNILVYISICSLIGSFTVLSAKAISILIKLTFSGDN--QFTYPLTYLLLLVLV- 220 (300)
T ss_pred hhHHHHHHHHHHHHHhhcchhcc---cceEEEEEEeccccchhhhHHHHHHHHHHHHhcCch--hhhhhHHHHHHHHHH-
Confidence 11111111111111122222 1111121 223332222111111111 111211 122234454444332
Q ss_pred HHHHHHHHHHHHHHHhhchhHHH-HHHHhHHHHHHHHHHHHhCCC--CCH----HHHhHHHHHHHHHHHHHhh
Q psy16816 348 IGSVLTETLWLWGMLLTSPLIAT-LGLGLIVPLSMIANTSLYHVT--YPR----LFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 348 l~s~ls~~l~~~ai~~tspl~~t-v~~~l~iPla~i~~~l~~ge~--~s~----~~iiG~~lIl~g~~l~~~~ 413 (470)
.+.+.-....++|+++-++..+. +....-+-.+++.+.++++|. +++ ....|..+++.|+++.+..
T Consensus 221 ~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~ 293 (300)
T PF05653_consen 221 VTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSS 293 (300)
T ss_pred HHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeecc
Confidence 23444455667799987776543 223344455888999999974 444 4577888899999888744
No 41
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.23 E-value=2.4e-06 Score=73.23 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=65.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhh
Q psy16816 178 TKYNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLI 255 (470)
Q Consensus 178 ~~l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVv 255 (470)
.+.+.++.........+...+.+++++ +++++++.++++.++.|+++.+++++++ +|++++++++|++++++|++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~---~e~~~~~~~~g~~l~~~g~~ 122 (126)
T PF00892_consen 46 KNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFL---GERPSWRQIIGIILIIIGVV 122 (126)
T ss_pred cCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHH
Confidence 455666666655555444566666666 9999999999999999999999999999 99999999999999999998
Q ss_pred eee
Q psy16816 256 LVT 258 (470)
Q Consensus 256 li~ 258 (470)
++.
T Consensus 123 l~~ 125 (126)
T PF00892_consen 123 LIS 125 (126)
T ss_pred HHH
Confidence 764
No 42
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.15 E-value=0.00072 Score=69.34 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHh-hHHHHHHHHHHHhcCCCCCcc-------chhhHHHHHHHHHH
Q psy16816 184 QVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYS-SSSVLTLLICAFFPSSSSDKF-------SLSKCVTVCISVCG 253 (470)
Q Consensus 184 ~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~s-tsPvft~lla~lf~~~~~ek~-------s~~k~igvll~~~G 253 (470)
+.+..++..+.+|.+.|..+. .++..+|.+.-+.. +.-++..++..+++ +|=- -..-++|+++.++|
T Consensus 71 ~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~---gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 71 STLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIIN---GNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHc---cccccccccchHHHHHHHHHHHHHH
Confidence 467788899999999999998 99998888877765 55778888888876 5322 13478899999999
Q ss_pred hheeee----cCccc-----ccccchHHHHHHHHHHHHHHHHHHH-------HHHh--ccCCchhH--HHHHH-HHHHHH
Q psy16816 254 LILVTI----SDVYM-----EHLHIPSGSFLSLVSALFYSLYIVF-------LRRL--EHEEKLDI--VLFYG-FVGLYN 312 (470)
Q Consensus 254 Vvli~~----~~~~~-----~~~~~~~G~llaL~sAl~~Al~~vl-------~r~l--~~~~~~~~--~~~~g-~vglf~ 312 (470)
+++.+. .|... .+.+...|.+++++|.+.|+.|... .+.. .+.+.... +.+.+ ++|.+.
T Consensus 148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~ 227 (345)
T PRK13499 148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAI 227 (345)
T ss_pred HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHH
Confidence 999988 44421 1245688999999999999999943 3221 11112211 22221 233322
Q ss_pred HHHHHHHHHHHhhcccc---cccCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHH----HHHHhHHHHHHH
Q psy16816 313 CLLLWPLFFLLHYNSWE---VFSLPD---RDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIAT----LGLGLIVPLSMI 382 (470)
Q Consensus 313 l~~l~p~~~~l~~~~~e---~~~~p~---~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~t----v~~~l~iPla~i 382 (470)
.-+.+.....-.-.... .+..+. .+....-...|++ -.++++++.++..+.+...+. +.+.+.+.++.+
T Consensus 228 ~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistl 306 (345)
T PRK13499 228 TNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNL 306 (345)
T ss_pred HHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHH
Confidence 11111111100100010 111111 1222222334444 666777777776654332222 233456677999
Q ss_pred HHHHHhCCCCC------HHHHhHHHHHHHHHHHHHhh
Q psy16816 383 ANTSLYHVTYP------RLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 383 ~~~l~~ge~~s------~~~iiG~~lIl~g~~l~~~~ 413 (470)
++.+ +||.=+ ...++|.+++++|.+++.+.
T Consensus 307 wGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 307 WGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9995 888766 67799999999999998754
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.10 E-value=0.00012 Score=73.55 Aligned_cols=139 Identities=12% Similarity=0.237 Sum_probs=93.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--cCCCHHHHHHHHHH
Q psy16816 268 HIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVF--SLPDRDQWVILLIE 345 (470)
Q Consensus 268 ~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~--~~p~~~~~~~ll~~ 345 (470)
+...|.+++++++++|+...+..|...+-+......+-..+|. +++.+..... .+.... ...+...+.. ...
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~~~~~~~~~~~~R~~~a~---~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 78 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSF---FFMVVLMSIC--RQWSYLKTLIQTPQKIFM-LAV 78 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHHHHHHHHH--ccHHHHHHHHcCHHHHHH-HHH
Confidence 4578999999999999999999987643233333332222332 2222222111 110000 0112233332 334
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 346 GLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 346 gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
+.++..+.+.+++++++++++..+++... +.|+ .+++++++++|+++..+++|.++.++|++++..+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~ 146 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYF-INPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT 146 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55556778999999999999999887655 5577 9999999999999999999999999999998753
No 44
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.03 E-value=0.00022 Score=69.89 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHh-hcc-cccccCCCH-HHHHHHHHHHH
Q psy16816 271 SGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLH-YNS-WEVFSLPDR-DQWVILLIEGL 347 (470)
Q Consensus 271 ~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~-~~~-~e~~~~p~~-~~~~~ll~~gi 347 (470)
.|.++.++++++|+...+..|...+-+......+=++++. +++.+...... ... .+.+..+.. ..+..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~~~~~~~~i~~~R~~~a~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLLKPLPATDILGHRMIWSF---PFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---HHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4889999999999999999987543333333333333332 22222211110 000 011221112 22444555666
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 348 IGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 348 l~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
+ ..+...+++++++++++..+++... +.|+ .++++.++++|+++..+++|.++.++|++++..+
T Consensus 79 ~-~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~ 143 (256)
T TIGR00688 79 L-IGFNWWLFIWAVNNGSSLEVSLGYL-INPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL 143 (256)
T ss_pred H-HHHHHHHHHHHHHcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 5677899999999999988887654 5677 9999999999999999999999999999987643
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.99 E-value=6.4e-05 Score=66.52 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHH--HHhCCCCCHHHHhHHHHHHHHHHHHHhhhc
Q psy16816 342 LLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANT--SLYHVTYPRLFYVGAVPVVFAFVASILLAQ 415 (470)
Q Consensus 342 ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~--l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~ 415 (470)
.++.|+++.++++++|.+++++.+...+.-..+....+..+.++ +++||++++.+++|.++|++|+++++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 46678888999999999999998777766544444334555666 489999999999999999999999986543
No 46
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.97 E-value=8.9e-05 Score=70.38 Aligned_cols=205 Identities=13% Similarity=0.112 Sum_probs=145.2
Q ss_pred hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccc---cccchHHHHHHHHHHH
Q psy16816 205 LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYME---HLHIPSGSFLSLVSAL 281 (470)
Q Consensus 205 L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~---~~~~~~G~llaL~sAl 281 (470)
|+|.++...++..+.+-+.++.....++ +.|.+...+..-++.+..-+....+|.+.. .+...-|-++....++
T Consensus 89 LqyL~vpiYTiFKNltII~iAygEvl~F---gg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~Ncl 165 (309)
T COG5070 89 LQYLAVPIYTIFKNLTIILIAYGEVLFF---GGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCL 165 (309)
T ss_pred eeeeeeeHHHHhccceeehhHhhHHHHh---cCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhH
Confidence 9999999999999999999999999999 999999999888887777777777765422 1233468889999999
Q ss_pred HHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16816 282 FYSLYIVFLRRLEH---EEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFS-LPDRDQWVILLIEGLIGSVLTETLW 357 (470)
Q Consensus 282 ~~Al~~vl~r~l~~---~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~-~p~~~~~~~ll~~gil~s~ls~~l~ 357 (470)
..|.|...+|+.-+ -.+.+...|-....+ .++...-+..+....+... -.+.....++.+.|+. ++.--++-
T Consensus 166 ssaafVL~mrkri~ltNf~d~dtmfYnNllsl---PiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~-svgiSy~s 241 (309)
T COG5070 166 SSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSL---PILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLC-SVGISYCS 241 (309)
T ss_pred hHHHHHHHHHHhhcccccchhhHHHHhhhHHH---HHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHH-Hhhhhhcc
Confidence 99999999965544 234565554433332 2222222222221111111 1112345677888886 55556888
Q ss_pred HHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 358 LWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 358 ~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
.|.++.|++.+-++...+.-....+.|.++++++.+...+....+=+++..++...+.+
T Consensus 242 aWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 242 AWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred ceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999887776655554446678999999999999999998888888888876443
No 47
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.90 E-value=7.6e-05 Score=64.31 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=55.2
Q ss_pred HHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeee
Q psy16816 194 FLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTI 259 (470)
Q Consensus 194 ~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~ 259 (470)
..+.++.+++. ++..|.+.+-.+.++.++++.+++++++ +||++.+|++|+.+.++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f---~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLW---HEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33444555555 9999999999999999999999999999 999999999999999999998754
No 48
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.79 E-value=0.00023 Score=61.16 Aligned_cols=78 Identities=9% Similarity=0.242 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhc
Q psy16816 337 DQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQ 415 (470)
Q Consensus 337 ~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~ 415 (470)
+.+..++..|+++...++.+|.++.+++++ .++....+...++++++.++++|+++...++|.+++++|++++.+.+.
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 345566777777666889999999999985 665555555444999999999999999999999999999999997743
No 49
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.71 E-value=0.00055 Score=70.05 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 337 DQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 337 ~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
..|.++ ..|++ -+.+++++..|.++|+-..+++.....+|++++++++++++++++.+++|.++.++|+.++...+..
T Consensus 78 ~~w~y~-lla~~-Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 78 PWWKYF-LLALL-DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred hHHHHH-HHHHH-HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 344444 45776 7789999999999999999998888999999999999999999999999999999999998877543
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.47 E-value=0.0064 Score=60.91 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHH
Q psy16816 273 SFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVL 352 (470)
Q Consensus 273 ~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~l 352 (470)
.+..++-++.|+...+..|...+ ..++..+..+=.+++.+++++... ..+ -..++.+.|......|++...+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~---~~~---~~~~~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLL---LRG---HPLPTLRQWLNAALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHH---HhC---CCCCcHHHHHHHHHHHHHHHHH
Confidence 44567778899999888886544 233322222222222333333322 111 1223445677777778776566
Q ss_pred HHHHHHHHH-HhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 353 TETLWLWGM-LLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 353 s~~l~~~ai-~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
.+.++.++. ..+++..+++..+ +.|+ .++++.+ +||+++..+++|.++.++|+++....
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~-~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVA-TVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHH-HHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 677888888 7777777766554 4566 8888875 69999999999999999999988754
No 51
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.46 E-value=0.0015 Score=56.28 Aligned_cols=66 Identities=21% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 346 GLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 346 gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
++++..+++++|.+++++.+...+-...++....+.+++++++||++++.+++|.+++++|++++.
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345567789999999999877777766665444499999999999999999999999999998875
No 52
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.43 E-value=0.00013 Score=63.51 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=53.2
Q ss_pred HHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeee
Q psy16816 199 AEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTI 259 (470)
Q Consensus 199 ~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~ 259 (470)
.-++|+ ++.-.++.+.-+..++|+++.+++++|+ +||++..+++|+++..+|+++++.
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL---~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFL---GERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHh---cCCCCHHHHHHHHHHHhCeeeEec
Confidence 334555 9999999999999999999999999999 999999999999999999999874
No 53
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.41 E-value=0.0068 Score=62.81 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-C-CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHH
Q psy16816 271 SGSFLSLVSALFYSLYIVFLRRLEH-E-EKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLI 348 (470)
Q Consensus 271 ~G~llaL~sAl~~Al~~vl~r~l~~-~-~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil 348 (470)
.-.+..++..++|+.+.++.|..-+ + +..... ++- -.++.+++.|...... +.+.....+...|..+...|++
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~-~~R--~~iA~l~Ll~~~~~~~--~~~~~~~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFL-GYS--YLLASLLLLPSLFFTN--RSRSLPPLSVSILSKIGLLGFL 87 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHH-HHH--HHHHHHHHHHHHHHHH--HhcccCcchHHHHHHHHHHHHH
Confidence 3455677889999999999965543 2 222222 211 1122233344332211 1111111234567778888888
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHH------hCCCCCHHHHhHHHHHHHHHHHHHh
Q psy16816 349 GSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSL------YHVTYPRLFYVGAVPVVFAFVASIL 412 (470)
Q Consensus 349 ~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~------~ge~~s~~~iiG~~lIl~g~~l~~~ 412 (470)
+ .+.+.+++++++++++..+++..+ +.|+ .+++++++ ++|+++..+++|.++-++|+.++..
T Consensus 88 g-~~~~~~~~~gl~~tsa~~asll~~-~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 88 G-SMYVITGYIGIEYSNPTLASAISN-ITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred H-HHHHHHHHHHHhhccHHHHHHHHH-hhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6 455678899999999999998765 5566 99999988 6999999999999999999998764
No 54
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.34 E-value=0.0044 Score=60.38 Aligned_cols=78 Identities=17% Similarity=0.059 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 335 DRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 335 ~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
..+.+...+..|.++..+.+.+++++++++++..+++... +.|+ .++++.++++|++++.+++|.++.++|++++...
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~-~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 42 PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLY-LAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHh-hhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 3455666777777778888999999999999988887655 4466 9999999999999999999999999999998754
No 55
>KOG2922|consensus
Probab=97.15 E-value=0.0044 Score=62.16 Aligned_cols=201 Identities=13% Similarity=0.173 Sum_probs=114.0
Q ss_pred hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccc---------cchHHHHH
Q psy16816 205 LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHL---------HIPSGSFL 275 (470)
Q Consensus 205 L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~---------~~~~G~ll 275 (470)
+.+-|++.++-|.+++-++..+++..++ +||+++.-.+|.+++++|-.++.....+.... ..-.|.+
T Consensus 85 YaFAPasLVtPLGAlsvi~saila~~~L---~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fl- 160 (335)
T KOG2922|consen 85 YAFAPASLVTPLGALSVIISAILASFFL---KEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFL- 160 (335)
T ss_pred HhhchHhhhccchhHHHHHHHHHHHHHH---HHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHH-
Confidence 7889999999999999999999999999 99999999999999999999998876553200 0001111
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCCchhHHHHHHHHHHHH---HHHH--HHHHHHHhhcccccccCCCHHHHHHHHHHHHHH
Q psy16816 276 SLVSALFYSLYIVFLRRLE-HEEKLDIVLFYGFVGLYN---CLLL--WPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIG 349 (470)
Q Consensus 276 aL~sAl~~Al~~vl~r~l~-~~~~~~~~~~~g~vglf~---l~~l--~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~ 349 (470)
+-.++.-.+..++.-..+ ++-..++..|.+..++.+ .+.. ....+-+.+.|. -+...+..|..++..+..
T Consensus 161 -iy~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~--~ql~~~~ty~~~l~~~~~- 236 (335)
T KOG2922|consen 161 -VYVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN--NQLFYPLTWIFLLVVATC- 236 (335)
T ss_pred -HHHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC--cccccHHHHHHHHHHHHH-
Confidence 111111111111111111 122334444544443322 1110 001111111221 122233455555554442
Q ss_pred HHHHHHHHHHHHHhhchhHHH-HHHHhHHHHHHHHHHHHhCCC--CCH----HHHhHHHHHHHHHHHHHhh
Q psy16816 350 SVLTETLWLWGMLLTSPLIAT-LGLGLIVPLSMIANTSLYHVT--YPR----LFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 350 s~ls~~l~~~ai~~tspl~~t-v~~~l~iPla~i~~~l~~ge~--~s~----~~iiG~~lIl~g~~l~~~~ 413 (470)
.+.=....+.|...-++.+++ +...+-.-++++.+.++++|- .+. ..+.|...++.|..+.+..
T Consensus 237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~ 307 (335)
T KOG2922|consen 237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRT 307 (335)
T ss_pred HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeee
Confidence 333233446788876666554 333344556888888888763 443 3567888899998888644
No 56
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.06 E-value=0.0036 Score=55.38 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=55.5
Q ss_pred HHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHH--hcCCCCCccchhhHHHHHHHHHHhheeeecCc
Q psy16816 194 FLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAF--FPSSSSDKFSLSKCVTVCISVCGLILVTISDV 262 (470)
Q Consensus 194 ~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~l--f~~~~~ek~s~~k~igvll~~~GVvli~~~~~ 262 (470)
..+.++.+++. ++..+++.+..+.+..++++.+.++. ++ +|++++.|++|+++.++|++++..++.
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~---~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWF---NETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 34444555555 99999999999999999999888884 78 999999999999999999999886543
No 57
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.04 E-value=0.015 Score=57.73 Aligned_cols=137 Identities=21% Similarity=0.377 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH---HHHHHHHHHHHHHHHHHHHHHhhccccc-cc-CCCHHHHHHHH
Q psy16816 269 IPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIV---LFYGFVGLYNCLLLWPLFFLLHYNSWEV-FS-LPDRDQWVILL 343 (470)
Q Consensus 269 ~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~---~~~g~vglf~l~~l~p~~~~l~~~~~e~-~~-~p~~~~~~~ll 343 (470)
...|.++++.+-+.|+..-...|.+..-+..++. ..++.... ...... ..+... ++ ...++.+..+.
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~------l~ll~~--~r~~~~~~~~~~~p~~~~~~~ 76 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFM------LALLFL--LRQWRELKQLLKQPKTLLMLA 76 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH------HHHHHH--HhhhHHHHHHHhCcHHHHHHH
Confidence 4569999999999999999999888875444442 22222111 111111 111111 12 22345677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhc
Q psy16816 344 IEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQ 415 (470)
Q Consensus 344 ~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~ 415 (470)
..+++ -..-...+.|+......+-++++. +..|+ .++++.++++|+++..|++..++..+|+..-.+...
T Consensus 77 l~a~l-i~~nW~lfiWAvn~g~~leaSLGY-~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 77 LTALL-IGLNWWLFIWAVNNGHVLEASLGY-FINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHH-HHHHHHHhheecCCCchhHHHhHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 77776 345577888999999999998765 56787 999999999999999999999999999998887643
No 58
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.03 E-value=0.016 Score=58.20 Aligned_cols=130 Identities=9% Similarity=0.041 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH-HHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHH
Q psy16816 272 GSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYG-FVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGS 350 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g-~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s 350 (470)
|.+++++++++|+...+..|++.+ .+.+...+ .+|. +++...... .+ .+. ......+..-+..|++ -
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~g---~~~~~~~~~~~g~---l~~~~~~~~---~~-~~~-~~~~~~~~~g~l~G~~-w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIGG---GPYSQTLGTTFGA---LILSIAIAI---FV-LPE-FWALSIFLVGLLSGAF-W 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccCC---CHHHHHHHHHHHH---HHHHHHHHH---Hh-CCc-ccccHHHHHHHHHHHH-H
Confidence 678999999999999999988862 22222222 2222 111111111 11 111 1123334434444444 6
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHH-hHHHHHHHHHHHHhCCCCCHHH----HhHHHHHHHHHHHHHhh
Q psy16816 351 VLTETLWLWGMLLTSPLIATLGLG-LIVPLSMIANTSLYHVTYPRLF----YVGAVPVVFAFVASILL 413 (470)
Q Consensus 351 ~ls~~l~~~ai~~tspl~~tv~~~-l~iPla~i~~~l~~ge~~s~~~----iiG~~lIl~g~~l~~~~ 413 (470)
.+++++++.++++++-..+..... +...++.+++.+++||+.+..+ ++|.+++++|.+++...
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 778999999999977766643333 3333488999999999999999 99999999998887654
No 59
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.03 E-value=0.0045 Score=55.33 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhee
Q psy16816 183 PQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 183 ~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli 257 (470)
.+.....+..|.++++.|+..+ ++++|+-+.+++...-.+.+.+++++++ +|+++..+++|++++++|+++=
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f---~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFF---GEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhc---CCcCCHHHHHHHHHHHHHHhee
Confidence 3466677778888999998888 9999999999999999999999999999 9999999999999999999764
No 60
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.98 E-value=0.03 Score=56.24 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHH
Q psy16816 273 SFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVL 352 (470)
Q Consensus 273 ~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~s~l 352 (470)
.+++++++++|+...+..|..-+ ..++..+..+=..++.+.+.+. .. .+ ..+ +..++..|++....
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~---~~---~~--~~~----~~~~~~~g~~~~~~ 71 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFF---VA---RP--KVP----LNLLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHH---hc---CC--CCc----hHHHHHHHHHHHHH
Confidence 46789999999999999976543 2333222111111111111111 10 11 111 22334445543344
Q ss_pred HHHHHHHHHHhh-chhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 353 TETLWLWGMLLT-SPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 353 s~~l~~~ai~~t-spl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
.+.+++.+.+++ ++..+++...+..++..++++++++|+++..+++|.++.++|+++....
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 444566777775 4456665555443349999999999999999999999999999988754
No 61
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.95 E-value=0.042 Score=53.66 Aligned_cols=140 Identities=20% Similarity=0.247 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHH
Q psy16816 269 IPSGSFLSLVSALFYSLYIVFLRRLEHE-EKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGL 347 (470)
Q Consensus 269 ~~~G~llaL~sAl~~Al~~vl~r~l~~~-~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gi 347 (470)
...+....+..++.|+......+..... .......++.+... ... .......+.. ...+....+...+..+.
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIA--ALL----LLPLLLLEPR-GLRPALRPWLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHH--HHH----HHHHHHhhcc-cccccccchHHHHHHHH
Confidence 4678888899999999999998665542 22222222111111 111 1111111110 01111111334455556
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHH-HHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 348 IGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANT-SLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 348 l~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~-l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
++....+.+++.+++++++..++...+ +.|+ ..+++. ++++|+++...++|..+.+.|++++..+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIG-LLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 667888999999999999988887655 4555 888886 7779999999999999999999999977544
No 62
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.94 E-value=0.032 Score=56.01 Aligned_cols=76 Identities=8% Similarity=0.082 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 335 DRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 335 ~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
+.+.|..++..|++ ..+.+.+++++++++++..+++..++..++.++++.++++|+++..+++|.+++++|+.+..
T Consensus 61 ~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 61 SSALLKLLLPVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 35678888888888 46778999999999999999988776666699999999999999999999999999998765
No 63
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.84 E-value=0.011 Score=51.58 Aligned_cols=67 Identities=10% Similarity=0.011 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHH-HHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 348 IGSVLTETLWLWGMLLTSPLIATLG-LGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 348 l~s~ls~~l~~~ai~~tspl~~tv~-~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
++-.++++++.++++...-.++=.. ..+.+....+.+++++||++++.+++|.++|++|++.++..+
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3456788999999887443333211 224555678899999999999999999999999999998664
No 64
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.83 E-value=0.0046 Score=62.11 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=62.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhee
Q psy16816 180 YNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 180 l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli 257 (470)
.+...+..+. ..+..-.++.++|+ +++++++.++++.+..|++..+++++++ +|+++..+++|.++.++|+.+.
T Consensus 210 ~~~~~~~~l~-~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~l---gE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 210 FSLPAIIKLL-LAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLL---STPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHhHHHH
Confidence 3444443433 33444455677777 9999999999999999999999999999 9999999999999999999877
Q ss_pred eecC
Q psy16816 258 TISD 261 (470)
Q Consensus 258 ~~~~ 261 (470)
...+
T Consensus 286 ~~~~ 289 (295)
T PRK11689 286 WLAT 289 (295)
T ss_pred hhhH
Confidence 5543
No 65
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.79 E-value=0.013 Score=50.33 Aligned_cols=66 Identities=12% Similarity=0.017 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhhchhHHH-HHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 349 GSVLTETLWLWGMLLTSPLIAT-LGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 349 ~s~ls~~l~~~ai~~tspl~~t-v~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
+-.++++++..++++..-.++= +-..+.+....+.+++++||++++.+++|.++|++|++..+..+
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556788888888764433331 11224556678899999999999999999999999999998664
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.48 E-value=0.062 Score=55.30 Aligned_cols=141 Identities=11% Similarity=0.141 Sum_probs=85.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccCCCHHHHHHHHHHH
Q psy16816 268 HIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNS-WEVFSLPDRDQWVILLIEG 346 (470)
Q Consensus 268 ~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~-~e~~~~p~~~~~~~ll~~g 346 (470)
+...|.++.+++++||+.+.+-+|+.++ .+.-.|.-..|++..++.......+.... .+.....+...+..-++.|
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~---w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKVKK---WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccccCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 4578999999999999999999988664 33222332333333332221111111111 1223333455666666677
Q ss_pred HHHHHHHHHHHHHHHHhhchhH-HHHHHHhHHHHHHHHHHHHhCCCC-------CHHHHhHHHHHHHHHHHHHh
Q psy16816 347 LIGSVLTETLWLWGMLLTSPLI-ATLGLGLIVPLSMIANTSLYHVTY-------PRLFYVGAVPVVFAFVASIL 412 (470)
Q Consensus 347 il~s~ls~~l~~~ai~~tspl~-~tv~~~l~iPla~i~~~l~~ge~~-------s~~~iiG~~lIl~g~~l~~~ 412 (470)
++ -.+++..+..++++.+-.. ..+...++..++.+++.+++||-. ...-++|.+++++|+++..+
T Consensus 81 ~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 81 AL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 76 7788888888887633221 122222444446667777887532 24578899999999999998
No 67
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.45 E-value=0.027 Score=48.03 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhhchhHH-HHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 349 GSVLTETLWLWGMLLTSPLIA-TLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 349 ~s~ls~~l~~~ai~~tspl~~-tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
+-.+++++...+++..+-.++ ++-..+.+....+.+++++||++++.+++|.++|+.|++..+..+
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~ 104 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST 104 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 346778888888876443332 122225556688899999999999999999999999999988653
No 68
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.45 E-value=0.015 Score=58.21 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=54.4
Q ss_pred HHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecC
Q psy16816 198 GAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISD 261 (470)
Q Consensus 198 ~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~ 261 (470)
++.++|+ +++.+++.++++.++.|+++.+++++++ +|+++..+++|.++.++|++......
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~l---gE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFL---GETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555 9999999999999999999999999999 99999999999999999998886543
No 69
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.44 E-value=0.17 Score=52.29 Aligned_cols=75 Identities=12% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 337 DQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 337 ~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
..|..++..|+++.. .+...+.+++++++..+++..+ ..|+ .++++.++++|+++..+++|.+++++|+.+....
T Consensus 112 ~~~~~llp~gl~~~~-~~~~~~~sl~~~svs~~~iika-~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~ 187 (350)
T PTZ00343 112 LFLKNFLPQGLCHLF-VHFGAVISMGLGAVSFTHVVKA-AEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK 187 (350)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHH-hhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence 466778888887544 4677778999999999888776 5566 9999999999999999999999999999998753
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.41 E-value=0.026 Score=57.08 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=73.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHH
Q psy16816 267 LHIPSGSFLSLVSALFYSLYIVFLRRLE-HEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIE 345 (470)
Q Consensus 267 ~~~~~G~llaL~sAl~~Al~~vl~r~l~-~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~ 345 (470)
.+..+|.++++.|+++.|+..+++|+-. ++++.+... + .+. .+. +. ++..|.-+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~--~-~~~------~~~-----------l~--~~~W~~G~--- 57 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA--G-SGG------RSY-----------LR--RPLWWIGL--- 57 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--c-chh------hHH-----------Hh--hHHHHHHH---
Confidence 4568999999999999999999996532 221100000 0 000 000 00 01111111
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 346 GLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 346 gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
+..+++..+.+.++.......++-...+.+.++++++..+++|+++...++|.+++++|..++....
T Consensus 58 --~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 58 --LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred --HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 1122333344445555445455544557778899999999999999999999999999998766443
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.037 Score=47.10 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhhchhHH-HHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 350 SVLTETLWLWGMLLTSPLIA-TLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 350 s~ls~~l~~~ai~~tspl~~-tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
-.+++++..++++...-.++ ++-....+....+.++++++|++++.+++|.+++++|++..+..+
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 45678888888887433222 111224556678899999999999999999999999999998764
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.0011 Score=64.15 Aligned_cols=217 Identities=16% Similarity=0.098 Sum_probs=144.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhH-HHHHHHHHHHhcCCCCCccchhh----HHHHHHHHH
Q psy16816 180 YNIPQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSS-SVLTLLICAFFPSSSSDKFSLSK----CVTVCISVC 252 (470)
Q Consensus 180 l~~~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~sts-Pvft~lla~lf~~~~~ek~s~~k----~igvll~~~ 252 (470)
....+.+..++.-+.+|...+..-+ .++..++.+.-+++-+ -+-+-+++++.+ +|--+..+ .+++++.++
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f---~EW~t~~~~IlG~iAlilivi 129 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVF---HEWTTPTQIILGFIALILIVI 129 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEE---eccCcchhHHHHHHHHHHHHH
Confidence 3444577788888999988776666 9999999888887744 566778899988 88877654 567888999
Q ss_pred HhheeeecCccc----ccccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy16816 253 GLILVTISDVYM----EHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSW 328 (470)
Q Consensus 253 GVvli~~~~~~~----~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~ 328 (470)
|+.+.++.|... +.++.-.|....+.|.+.|-.|.++.+..+- +..+..+... +|. ....+.+.+.+.
T Consensus 130 G~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v-~g~saiLPqA-iGM------v~~ali~~~~~~ 201 (288)
T COG4975 130 GIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDV-DGLSAILPQA-IGM------VIGALILGFFKM 201 (288)
T ss_pred hheEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeeccccc-cchhhhhHHH-HHH------HHHHHHHhhccc
Confidence 999999887522 1234567889999999999999999876652 2233322222 222 111122222222
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHH----HhHHHHHH
Q psy16816 329 EVFSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLF----YVGAVPVV 404 (470)
Q Consensus 329 e~~~~p~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~----iiG~~lIl 404 (470)
| ....+....-+.-|++ ..+++.+++++..+.+-.++=...-+.+.++.+.+.++++|+-+..+ ++|.++++
T Consensus 202 ~---~~~~K~t~~nii~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiiliv 277 (288)
T COG4975 202 E---KRFNKYTWLNIIPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIV 277 (288)
T ss_pred c---cchHHHHHHHHhhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHH
Confidence 2 2233333334455666 67788888888776433322111225666799999999999988654 67888888
Q ss_pred HHHHHHH
Q psy16816 405 FAFVASI 411 (470)
Q Consensus 405 ~g~~l~~ 411 (470)
.|..+..
T Consensus 278 vgai~lg 284 (288)
T COG4975 278 VGAILLG 284 (288)
T ss_pred HHhhhhh
Confidence 8877654
No 73
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.99 E-value=0.066 Score=45.96 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhchhHH-HHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 350 SVLTETLWLWGMLLTSPLIA-TLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 350 s~ls~~l~~~ai~~tspl~~-tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
-.+++++...+++...-.++ ++-....+....+.+++++||++++.+++|.++|+.|++..+
T Consensus 45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 45678888888876433332 111224555678899999999999999999999999999876
No 74
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.92 E-value=0.04 Score=48.13 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=53.5
Q ss_pred HHHHHHHHHHH--hhccchHHHHHHH-hhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecC
Q psy16816 194 FLRFGAEYTFT--LLGAEAGTVALIY-SSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISD 261 (470)
Q Consensus 194 ~l~~~~n~~~~--L~~tsvs~atiL~-stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~ 261 (470)
.++.++.+++. +++.|.+.+=.+- ...-+.+.+++++++ +|++++.|++|+.+.++|++++-..+
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f---~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLF---DESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 33444445555 9999999998885 577899999999999 99999999999999999999886544
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.86 E-value=0.044 Score=47.13 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=52.4
Q ss_pred HHHHHHHHHHH--hhccchHHHHHHHh-hHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeec
Q psy16816 194 FLRFGAEYTFT--LLGAEAGTVALIYS-SSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTIS 260 (470)
Q Consensus 194 ~l~~~~n~~~~--L~~tsvs~atiL~s-tsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~ 260 (470)
..+.++.++.. ++..|.+.+=.+-+ ..-+.+.+++++++ +|++++.+++|+.+.++|++++-..
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f---~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF---GQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444 99999999988754 67888899999999 9999999999999999999998543
No 76
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.81 E-value=2.7 Score=43.09 Aligned_cols=228 Identities=15% Similarity=0.161 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHh-hHHHHHHHHHHHhcCCC----CCccchhhHHHHHHHHHHhhee
Q psy16816 185 VAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYS-SSSVLTLLICAFFPSSS----SDKFSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 185 ~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~s-tsPvft~lla~lf~~~~----~ek~s~~k~igvll~~~GVvli 257 (470)
++...+.++++|.+....|. .+|+-+|..+-+.- +.-++-.++-.++...- ..+-....++|++++++|+++.
T Consensus 72 ~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~ 151 (344)
T PF06379_consen 72 TLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAIC 151 (344)
T ss_pred HHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHH
Confidence 66677899999999999998 88877665543332 33333333433332000 1122346899999999999999
Q ss_pred eecCccc--------ccccchHHHHHHHHHHHHHHHHHHHHHH---hcc-----C-Cch---hHHHHHHHHHHHHHHHHH
Q psy16816 258 TISDVYM--------EHLHIPSGSFLSLVSALFYSLYIVFLRR---LEH-----E-EKL---DIVLFYGFVGLYNCLLLW 317 (470)
Q Consensus 258 ~~~~~~~--------~~~~~~~G~llaL~sAl~~Al~~vl~r~---l~~-----~-~~~---~~~~~~g~vglf~l~~l~ 317 (470)
.+..... .+.+...|.+++++|.+..|.+.+-... ..+ + ++. .+...+-+.|-+..-+.+
T Consensus 152 g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~y 231 (344)
T PF06379_consen 152 GKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIY 231 (344)
T ss_pred hHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHH
Confidence 7654321 1244678999999999999998877621 111 0 111 111122223333222223
Q ss_pred HHHHHHhhccc---ccccC--CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH----HHHHHhHHHHHHHHHHHH
Q psy16816 318 PLFFLLHYNSW---EVFSL--PD-RDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIA----TLGLGLIVPLSMIANTSL 387 (470)
Q Consensus 318 p~~~~l~~~~~---e~~~~--p~-~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~----tv~~~l~iPla~i~~~l~ 387 (470)
...-...-... .++.. |. ...+..-+..|++ -...+++|.++-.+..+... .+-+++.+.++-+++.+.
T Consensus 232 c~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~l 310 (344)
T PF06379_consen 232 CLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLIL 310 (344)
T ss_pred HHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 32211110111 12221 11 2333344444444 55555555555544443211 222445555677788776
Q ss_pred h-----CCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 388 Y-----HVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 388 ~-----ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
. +.+.-...++|.++++++.+++-+.
T Consensus 311 kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 311 KEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 4 1333455689999999999888654
No 77
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.76 E-value=0.28 Score=49.47 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 342 LLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 342 ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
.+..+++ ..++..+-+.++++.+--+-.+.-+..++..++++.++++++++..++++.+++.+|+.+....+.+
T Consensus 67 ~~~~~~~-~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 67 YAILSFL-FFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 3444444 5666777788888876666666666665668999999999999999999999999999999987544
No 78
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.19 E-value=0.12 Score=44.35 Aligned_cols=60 Identities=8% Similarity=0.180 Sum_probs=48.9
Q ss_pred HHHHHHHHHH--hhccchHHHHHHHh-hHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhee
Q psy16816 195 LRFGAEYTFT--LLGAEAGTVALIYS-SSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 195 l~~~~n~~~~--L~~tsvs~atiL~s-tsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli 257 (470)
.+.++.|+.. +++.|++.+=.+-+ ..-+.+.+.+++++ +|++++.|++++.+.++|++++
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f---~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILF---GQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHh
Confidence 3333444444 99999999877666 45788899999999 9999999999999999999876
No 79
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.04 E-value=0.07 Score=46.06 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhccchHHHHHHH-hhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhee
Q psy16816 185 VAKVAFVFSFLRFGAEYTFT-LLGAEAGTVALIY-SSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 185 ~~~l~~~~~~l~~~~n~~~~-L~~tsvs~atiL~-stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli 257 (470)
..++.+++.+=-..+-++|. +...+.|.+.-+. +++-+||++.+++++ +|..+++.++|+++.+.|+.+.
T Consensus 41 n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lg---e~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 41 NPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLG---EEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhc---CcccchhHHHHHHHHHcCeeee
Confidence 34455555554444555555 9999999999995 788999999999998 7888899999999999999874
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=94.93 E-value=0.21 Score=42.65 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHHHHHHH--hhccchHHHHHHHh-hHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheee
Q psy16816 197 FGAEYTFT--LLGAEAGTVALIYS-SSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVT 258 (470)
Q Consensus 197 ~~~n~~~~--L~~tsvs~atiL~s-tsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~ 258 (470)
..+.|+.. ++..|++.+=.+-. ..-+.+.+++++++ +|++++.|++++.+.++|++.+-
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f---~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLL---GESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHhhh
Confidence 33444444 89999999877666 56788899999999 99999999999999999999874
No 81
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.77 E-value=0.65 Score=47.43 Aligned_cols=143 Identities=10% Similarity=0.146 Sum_probs=84.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccCCCHHHHHHHHHH
Q psy16816 267 LHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEV-FSLPDRDQWVILLIE 345 (470)
Q Consensus 267 ~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~-~~~p~~~~~~~ll~~ 345 (470)
.....|+++..+++++-+.+++=.||+++ .+.-.|.-..|+++.++.-+....+...+... +...+...+......
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkvk~---WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKVKG---WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhcCC---ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 34588999999999999999999999986 33333343444544443322222222222211 222222344555666
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHH-HHHHHhHHHHHHHHHHHHhC-------CCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 346 GLIGSVLTETLWLWGMLLTSPLIA-TLGLGLIVPLSMIANTSLYH-------VTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 346 gil~s~ls~~l~~~ai~~tspl~~-tv~~~l~iPla~i~~~l~~g-------e~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
|++ -.++...|-.++++.+-..+ ++.+.++..+..++-.++.| ++-....++|.++.++|+.+..+.
T Consensus 80 G~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 80 GVL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 776 77777888888887433221 22222333444444344433 223456899999999999998865
No 82
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.2 Score=42.69 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=45.6
Q ss_pred hhccchHHHHHHHh-hHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeee
Q psy16816 205 LLGAEAGTVALIYS-SSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTI 259 (470)
Q Consensus 205 L~~tsvs~atiL~s-tsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~ 259 (470)
++++|++.+=.+-+ .--+.|.+.+++++ +|+++..|++++.+.++|++.+-.
T Consensus 51 lk~ipvgvAYAiW~GiG~v~~~l~g~~~f---~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 51 LKTIPLGVAYAIWTGIGIVGTALVGVLLF---GESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHhc---CCcCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999866655 44788999999999 999999999999999999987643
No 83
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.54 E-value=1.3 Score=39.56 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHH
Q psy16816 272 GSFLSLVSALFYSLYIVFLRRLEH--EEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIG 349 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~r~l~~--~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~gil~ 349 (470)
..++++++..+-++...+.-++.+ .++....+.--.+|...++..+ +.......+ ..+....|.+ .-|+++
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~---~~~~~~~~~--~~~~~p~w~~--lGG~lG 74 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIIL---LITGRPSLA--SLSSVPWWAY--LGGLLG 74 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH---HHhcccccc--hhccCChHHh--ccHHHH
Confidence 356788888888888777733333 2244333333334443222211 111111111 1111112222 256664
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHh-HHHHHHHHHHH----HhCCCCCHHHHhHHHHHHHHHHH
Q psy16816 350 SVLTETLWLWGMLLTSPLIATLGLGL-IVPLSMIANTS----LYHVTYPRLFYVGAVPVVFAFVA 409 (470)
Q Consensus 350 s~ls~~l~~~ai~~tspl~~tv~~~l-~iPla~i~~~l----~~ge~~s~~~iiG~~lIl~g~~l 409 (470)
. +.-++..+.+.+.++..++..... +...+++.|.+ .-++++++..++|.+++++|+++
T Consensus 75 ~-~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 75 V-FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred H-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3 346777778888777665544333 33337777775 34578999999999999999863
No 84
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.03 E-value=0.23 Score=41.16 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhchhHH-HHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHH
Q psy16816 349 GSVLTETLWLWGMLLTSPLIA-TLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPV 403 (470)
Q Consensus 349 ~s~ls~~l~~~ai~~tspl~~-tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lI 403 (470)
+-.++++++.+++++....++ ++-..+.+....+.+.+++||++++.+++|.++|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 456778899999998554444 2222355666888999999999999999999876
No 85
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.03 E-value=0.32 Score=47.69 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcc
Q psy16816 338 QWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQM 416 (470)
Q Consensus 338 ~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~ 416 (470)
....+.+-+++ -.+.+.+.+.++...+|.+-.+...+.++.++++.+++++++++..+|++..++++|+.++......
T Consensus 16 ~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 16 DTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 34444555555 5667888889999999998888888999999999999999999999999999999999999876544
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=92.80 E-value=0.38 Score=39.87 Aligned_cols=52 Identities=19% Similarity=0.112 Sum_probs=28.6
Q ss_pred HHHHHHHHHH--hhccchHHHHHH-HhhHHHHHHHHHHHhcCCCCCccchhhHHHHHH
Q psy16816 195 LRFGAEYTFT--LLGAEAGTVALI-YSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCI 249 (470)
Q Consensus 195 l~~~~n~~~~--L~~tsvs~atiL-~stsPvft~lla~lf~~~~~ek~s~~k~igvll 249 (470)
.+.++.+++. +++.|.+.+=.+ .....+.+.+++.+++ +|+++..|++|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f---~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFF---GESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh---CCCCCHHHHhheee
Confidence 4555556666 999999999555 5588999999999999 99999999999876
No 87
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.75 E-value=4.7 Score=36.62 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhC----CCCCHHHHhHHHHHHHHHHHHH
Q psy16816 376 IVPLSMIANTSLYH----VTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 376 ~iPla~i~~~l~~g----e~~s~~~iiG~~lIl~g~~l~~ 411 (470)
+...+++.|.+=+. .++++..++|++++++|+++..
T Consensus 106 Qli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 106 QLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 34446666655443 6799999999999999955554
No 88
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=91.24 E-value=0.79 Score=45.27 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Q psy16816 272 GSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGF 307 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~ 307 (470)
|.+.+++|+++++...|=.|+....|.+-.|.+++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~gDg~~fQw~~~~ 36 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTGDGFFFQWVMCS 36 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCCCcHHHHHHHHH
Confidence 567789999999999999998887776666666553
No 89
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=89.26 E-value=1.6 Score=42.89 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH---hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhe
Q psy16816 180 YNIPQVAKVAFVFSFLRFGAEYTFT---LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLIL 256 (470)
Q Consensus 180 l~~~~~~~l~~~~~~l~~~~n~~~~---L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvl 256 (470)
+.....+.+++..+++--..-|..- +...|..+..++.+.-|.+..+.+++++ +|+++..||+++...+++.+=
T Consensus 203 l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L---~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 203 LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFL---GETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHhc
Confidence 3444566666655555544444443 8999999999999999999999999999 999999999999988877653
No 90
>KOG2765|consensus
Probab=88.25 E-value=0.68 Score=47.74 Aligned_cols=76 Identities=7% Similarity=-0.078 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhccc
Q psy16816 341 ILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQMA 417 (470)
Q Consensus 341 ~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~~ 417 (470)
.-++.+.+ .+++++.++-++..|+....++..+..--+..+++.++.+|++++...+|..+-+.|+++++..+.++
T Consensus 161 ~sl~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 161 LSLFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 44555666 78889999999999988888876666666688999999999999999999999999999999886654
No 91
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=84.64 E-value=2.5 Score=42.08 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHH----HHHHHHHHhhe
Q psy16816 186 AKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCV----TVCISVCGLIL 256 (470)
Q Consensus 186 ~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~i----gvll~~~GVvl 256 (470)
....+..+++|.++|.+|. .+..-++.+-.++.++.+...+-+.+++ ||+=+++++. |+++.++|.++
T Consensus 195 ~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il---~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 195 SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFIL---KEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEE---EecCchhhHHHHHHHHHHHHHhhhc
Confidence 3445678899999999999 8888999999999999999999999999 9998887654 44445555543
No 92
>KOG1444|consensus
Probab=84.00 E-value=16 Score=37.07 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHH----HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHH--HHHHHHHH
Q psy16816 276 SLVSALFYSLYIVFL----RRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVI--LLIEGLIG 349 (470)
Q Consensus 276 aL~sAl~~Al~~vl~----r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~--ll~~gil~ 349 (470)
.+.++++|++-..++ |.+-...+.++.++.++.--++.++.....-.+....++++++...+.|.. +++.+-+-
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~ 92 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLF 92 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHH
Confidence 467788888776665 333333455555554433333332222222223334455555444444432 22222221
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhc
Q psy16816 350 SVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQ 415 (470)
Q Consensus 350 s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~ 415 (470)
+. ..+.++.+--.-++.-.+++.+.++.+.+++|.+++...+.....+++|-.+....+.
T Consensus 93 t~------~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~ 152 (314)
T KOG1444|consen 93 TG------SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL 152 (314)
T ss_pred Hc------cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc
Confidence 11 2344444433555566678888999999999999999999999999999888876643
No 93
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=82.61 E-value=2.1 Score=40.88 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=46.4
Q ss_pred hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhe
Q psy16816 205 LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLIL 256 (470)
Q Consensus 205 L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvl 256 (470)
++|.+....++...+.++++.+++++++ +++++..+++|+.+.+.|+.+
T Consensus 173 lk~~~~~~~~~~~~~~~~~s~lls~~~f---~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 173 VRYADNTTKSFVTALSIILSTLASVRLF---DAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHeeeEe
Confidence 9999999999999999999999999999 999999999999999998754
No 94
>KOG4314|consensus
Probab=81.33 E-value=0.78 Score=43.35 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhc
Q psy16816 351 VLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQ 415 (470)
Q Consensus 351 ~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~ 415 (470)
+.++|.|..++++.+|..++......-.+..+++++.+|+++....++.+++.+.|++++.+.+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 35689999999999999888665566667889999999999999999999999999999887643
No 95
>KOG3912|consensus
Probab=80.28 E-value=3.8 Score=40.94 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhccccCChh
Q psy16816 350 SVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQMASRDPV 422 (470)
Q Consensus 350 s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~~~~d~~ 422 (470)
-..+..+++.++.+|++..--+.-...+.+..+++.-+++.+++..+|+|...+.+|++++-..+-.-+.||.
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~ 168 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPY 168 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCc
Confidence 4455566677777777665444444567778889999999999999999999999999999877444344444
No 96
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=80.14 E-value=16 Score=29.43 Aligned_cols=62 Identities=15% Similarity=0.361 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy16816 270 PSGSFLSLVSALFYSLYIVFL---RRLEH--EEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVF 331 (470)
Q Consensus 270 ~~G~llaL~sAl~~Al~~vl~---r~l~~--~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~ 331 (470)
.++.++.+..++.|++..+-. |.-++ .+..+..-..|++|+|..-.+||...+..+...+..
T Consensus 5 a~~vli~~~~~~~~~~~~lh~lP~~iA~kr~Hpq~eaI~v~gwisLft~~~lWp~a~IwA~~d~~~~ 71 (78)
T PF11742_consen 5 ALVVLIFVVIVLIYGFWKLHDLPGKIAHKRNHPQAEAIHVLGWISLFTLHVLWPFAWIWAYLDRPDR 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 457777888888888766554 22222 356788888999999988888999988777665544
No 97
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=79.94 E-value=5 Score=34.70 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHHHHhhchh-HHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHH
Q psy16816 355 TLWLWGMLLTSPL-IATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVA 409 (470)
Q Consensus 355 ~l~~~ai~~tspl-~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l 409 (470)
..|++.+.+++=. .+.+..++...++++.++++.+|..+...++|.++|+.|+.+
T Consensus 56 v~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 56 VLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3344444443222 333445677788999999999888999999999999999764
No 98
>KOG4510|consensus
Probab=76.60 E-value=0.88 Score=44.99 Aligned_cols=69 Identities=13% Similarity=0.244 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHH-HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 343 LIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 343 l~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPl-a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
++=|++|+ .+-++..|+..+-+-.-+++.. +..|. .+++++++++|+++....+|..+-+.|++++..+
T Consensus 101 iLRg~mG~-tgvmlmyya~~~mslaDA~vIt-FssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 101 ILRGFMGF-TGVMLMYYALMYMSLADAVVIT-FSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred Eeehhhhh-hHHHHHHHHHhhcchhheEEEE-ecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 33455533 2355666666654333343333 44466 9999999999999999999999999999998865
No 99
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=68.17 E-value=2.8 Score=32.36 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=35.0
Q ss_pred hHHHhhHHHHHHHHHhhhhhHHHHHHHhcc-CCCCCcccc
Q psy16816 23 QRHALGCFVLILVDILWALSSEIVKKVDQH-VEDESYFTD 61 (470)
Q Consensus 23 ~r~~~G~~ll~~v~~~Wv~S~~l~~~if~~-~~~~~~f~~ 61 (470)
.++++|++++++.++.|...+...||+-+| .-.+|||..
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~EpFfLi 41 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLHEPFFLI 41 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEecccHHH
Confidence 489999999999999999999999999998 667788665
No 100
>KOG1580|consensus
Probab=67.21 E-value=7.7 Score=37.84 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=46.8
Q ss_pred HHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheee
Q psy16816 197 FGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVT 258 (470)
Q Consensus 197 ~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~ 258 (470)
.+.+++-+ ..+-++-.-+++..|--+||.+.+++++ ...++.++|+|.++.+.|...=.
T Consensus 252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf---~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLF---NNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHh---cCcCcHHHHHHHHHHHHHhhhHh
Confidence 34455554 6666666667778888999999999999 99999999999999998876533
No 101
>KOG4831|consensus
Probab=65.40 E-value=8.4 Score=32.82 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHh-hHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheee
Q psy16816 186 AKVAFVFSFLRFGAEYTFT-LLGAEAGTVALIYS-SSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVT 258 (470)
Q Consensus 186 ~~l~~~~~~l~~~~n~~~~-L~~tsvs~atiL~s-tsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~ 258 (470)
..+.++|.+=-+.+..+|. |+.++.+.+.-+.+ ++-+||.+++..++ .|..-.+-++|..+.+.|+.+..
T Consensus 53 w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LG---E~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 53 WEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALG---EETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhc---cccccceeehhhhHHhhhhhhee
Confidence 3455666655555555555 99988887765554 57899999999987 66666778889999999987653
No 102
>KOG2922|consensus
Probab=65.18 E-value=4.3 Score=41.18 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=72.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHH
Q psy16816 267 LHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEG 346 (470)
Q Consensus 267 ~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~p~~~~l~~~~~e~~~~p~~~~~~~ll~~g 346 (470)
+++..|.++++.|.++-+....+.|+-.+ +... .+. ... -.++..- -....+.|
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~--r~~~------~~~-------------ra~-~gg~~yl----~~~~Ww~G 70 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLK--RAGA------SGL-------------RAG-EGGYGYL----KEPLWWAG 70 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHH--HHhh------hcc-------------ccc-CCCcchh----hhHHHHHH
Confidence 56788999999999999988888855432 1100 000 000 0000000 00112223
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 347 LIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 347 il~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
++.-.++...-+-++....+..++-...+.++.+++++..+++|++++...+|.++.++|-.++-.-
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 3333334444444444444445554455788889999999999999999999999999887766543
No 103
>KOG2234|consensus
Probab=63.73 E-value=1.7e+02 Score=30.29 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 352 LTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 352 ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
+=+.+...+....+|.+-.+...+.|.-++++..++++++++..||...++.++|+.++.++
T Consensus 104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 33456677888888888877777888889999999999999999999999999999999954
No 104
>KOG1441|consensus
Probab=62.46 E-value=5.1 Score=40.87 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 335 DRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 335 ~~~~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
+...|.-++-.|++ ..++..+-+.++.+.+-...-..-.+.+|+..+++.++.+|+++...++-...|..|+.+..+.
T Consensus 79 ~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~ 156 (316)
T KOG1441|consen 79 SKLPLRTLLPLGLV-FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT 156 (316)
T ss_pred cccchHHHHHHHHH-HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec
Confidence 44567777777776 6667777777888766555555555777779999999999998887766666666666665553
No 105
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=61.17 E-value=2e+02 Score=33.13 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=32.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhee
Q psy16816 211 GTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 211 s~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli 257 (470)
+.+.++...+|+=.+.++++.. .+|.+...+.+.+-.++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~---~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLL---AKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHH---hhcccchHHHHHHHHHHHHHHh
Confidence 6678888899999999988876 6665555566666666676644
No 106
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=60.83 E-value=1.7e+02 Score=33.50 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16816 184 QVAKVAFVFSFLRFGAEYTFT 204 (470)
Q Consensus 184 ~~~~l~~~~~~l~~~~n~~~~ 204 (470)
+..+..+..++.|+...+.|+
T Consensus 442 ~~~~~tl~l~~~wf~~~~~yy 462 (742)
T TIGR01299 442 EVREITIKLMGVWFTLSFGYY 462 (742)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777877777666
No 107
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=56.33 E-value=96 Score=30.71 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHH---HhcCCCCCc--cchhhHHHHHHHHHHhhee
Q psy16816 185 VAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICA---FFPSSSSDK--FSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 185 ~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~---lf~~~~~ek--~s~~k~igvll~~~GVvli 257 (470)
...+++..+.+|..+|.+-. ++..-.+....+-++.-+.+--..- +|. ..+|. -.+...+|++++++|.++.
T Consensus 54 f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg-~~~~~~~~~~Ln~~G~~l~~~~~~~f 132 (254)
T PF07857_consen 54 FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFG-LDPQVPSSPWLNYIGVALVLVSGIIF 132 (254)
T ss_pred ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecc-ccccccchhHHHHHHHHHHHHHHHhe
Confidence 45577888999999998877 8888899988888876554433321 222 11232 3456889999999999887
Q ss_pred eecCcccc-------------------------------------cccchHHHHHHHHHHHHHHHHHHHHHHh
Q psy16816 258 TISDVYME-------------------------------------HLHIPSGSFLSLVSALFYSLYIVFLRRL 293 (470)
Q Consensus 258 ~~~~~~~~-------------------------------------~~~~~~G~llaL~sAl~~Al~~vl~r~l 293 (470)
...+.... .++.+.|.+++++++++|+...+=...+
T Consensus 133 ~fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi 205 (254)
T PF07857_consen 133 SFIKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYI 205 (254)
T ss_pred eeecCCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHH
Confidence 65432210 0135677777777777777766555333
No 108
>PRK02237 hypothetical protein; Provisional
Probab=53.51 E-value=88 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 375 LIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 375 l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
.-|..|.++.+.+-|.+++...++|+++.++|..++.+.
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 455668999999999999999999999999999887643
No 109
>KOG2766|consensus
Probab=53.45 E-value=1.2 Score=43.83 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhccc-
Q psy16816 339 WVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQMA- 417 (470)
Q Consensus 339 ~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~~- 417 (470)
|-.-+..|++ -+=++++...|.++|+-+.+.+.-...+|.-++++|++++.++.+.++.|.++-++|++++...+-..
T Consensus 78 ~~hYilla~~-DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag 156 (336)
T KOG2766|consen 78 WRHYILLAFV-DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG 156 (336)
T ss_pred HHHhhheeEE-eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc
Confidence 3334455655 66778888899999988877777778899999999999999999999999999999998877553221
Q ss_pred ----cCChhhhhhhhh
Q psy16816 418 ----SRDPVLEILLSC 429 (470)
Q Consensus 418 ----~~d~~~~~~~~~ 429 (470)
..||+..++..+
T Consensus 157 d~aggsnp~~GD~lvi 172 (336)
T KOG2766|consen 157 DRAGGSNPVKGDFLVI 172 (336)
T ss_pred cccCCCCCccCcEEEE
Confidence 345655544443
No 110
>PRK15015 carbon starvation protein A; Provisional
Probab=53.12 E-value=1.8e+02 Score=32.85 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHhCCCCCHH---HHhHHHHHHHHHHHHHhh
Q psy16816 374 GLIVPLSMIANTSLYHVTYPRL---FYVGAVPVVFAFVASILL 413 (470)
Q Consensus 374 ~l~iPla~i~~~l~~ge~~s~~---~iiG~~lIl~g~~l~~~~ 413 (470)
.+++|+|+++++.+...++... .++|.++++++++.-.+-
T Consensus 197 ~~tIpiAl~mG~~l~~~r~g~v~~~SiiGvvll~~aI~~G~~~ 239 (701)
T PRK15015 197 AFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISGGWV 239 (701)
T ss_pred HHHHHHHHHHHHHheeecCCchHHHHHHHHHHHHHHHHHhHhh
Confidence 4677888888877765555443 777777777777665543
No 111
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=52.95 E-value=83 Score=27.96 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhHHH-HHHHHHHH-hcCCCCCccchhhHHHHHHHHHHhhe
Q psy16816 185 VAKVAFVFSFLRFGAEYTFTLLGAEAGTVALIYSSSSV-LTLLICAF-FPSSSSDKFSLSKCVTVCISVCGLIL 256 (470)
Q Consensus 185 ~~~l~~~~~~l~~~~n~~~~L~~tsvs~atiL~stsPv-ft~lla~l-f~~~~~ek~s~~k~igvll~~~GVvl 256 (470)
+..+.-.++..+...+... .....++.++++.-+.=+ ..+++-.+ ++..+++++++.|++|+++.++|+++
T Consensus 66 w~~lGG~lG~~~V~~~~~~-vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 66 WAYLGGLLGVFFVLSNIIL-VPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHhccHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3444445555444333222 566667666666665543 44444442 12245899999999999999999874
No 112
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=51.17 E-value=2.1e+02 Score=27.07 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16816 272 GSFLSLVSALFYSLYIVFL 290 (470)
Q Consensus 272 G~llaL~sAl~~Al~~vl~ 290 (470)
|.+..++.++.-++.....
T Consensus 112 gi~tli~~~i~~G~~~~~~ 130 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFI 130 (206)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 5555444444444444333
No 113
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=50.23 E-value=70 Score=27.33 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhh
Q psy16816 375 LIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 375 l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~ 413 (470)
.-|..|.++.+.+-|++++...++|+++.++|..++.+.
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 456679999999999999999999999999999987754
No 114
>PRK11715 inner membrane protein; Provisional
Probab=47.50 E-value=3.9e+02 Score=28.69 Aligned_cols=76 Identities=8% Similarity=-0.041 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhcccc
Q psy16816 339 WVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQMAS 418 (470)
Q Consensus 339 ~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~~~ 418 (470)
+.+++..+.+...++.|.....-.+..++.. +..+....+++...+-. | +..-++|.++.++...++.+..++.|
T Consensus 359 ~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~--~~~L~~LYg~Ly~lLq~-E--DyALL~GSllLF~~La~vM~~TR~iD 433 (436)
T PRK11715 359 LAYLIAALACVLLIGFYLSAVLRSWKRGLLF--AAALAALYGVLYGLLQS-E--DYALLLGSLLLFAVLALVMFLTRRID 433 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHH--HHHHHHHHHHHHHHHHH-h--HHHHHHHHHHHHHHHHHHHheeeccc
Confidence 4555555544344444443322222222221 22233333555555433 3 34457888888888777777766655
Q ss_pred C
Q psy16816 419 R 419 (470)
Q Consensus 419 ~ 419 (470)
|
T Consensus 434 W 434 (436)
T PRK11715 434 W 434 (436)
T ss_pred c
Confidence 5
No 115
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=46.58 E-value=2.6e+02 Score=26.41 Aligned_cols=25 Identities=4% Similarity=0.174 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16816 270 PSGSFLSLVSALFYSLYIVFLRRLE 294 (470)
Q Consensus 270 ~~G~llaL~sAl~~Al~~vl~r~l~ 294 (470)
+-+....++++++++++..+-|+.+
T Consensus 178 l~~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 178 LPPWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4466667777777777766666543
No 116
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=46.01 E-value=4e+02 Score=28.49 Aligned_cols=77 Identities=8% Similarity=-0.010 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhccc
Q psy16816 338 QWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQMA 417 (470)
Q Consensus 338 ~~~~ll~~gil~s~ls~~l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~~~ 417 (470)
.+.+++..+.+...++. |..++.+..--...++..+....+.+...+-. |. ..-++|.++.++-+.++.+..++.
T Consensus 352 ~~AYliAa~a~i~Li~~--Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~-Ed--yALL~GSl~LF~iLa~vM~~TRki 426 (430)
T PF06123_consen 352 NLAYLIAALACIGLISL--YLSSVLKSWKRGLIFAGLLAALYGFLYVLLQS-ED--YALLMGSLLLFIILALVMYLTRKI 426 (430)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-hh--HHHHHHHHHHHHHHHHHHheeecc
Confidence 34555555444344443 33333332222222233344444666665433 33 345788888888877777777766
Q ss_pred cC
Q psy16816 418 SR 419 (470)
Q Consensus 418 ~~ 419 (470)
||
T Consensus 427 DW 428 (430)
T PF06123_consen 427 DW 428 (430)
T ss_pred cc
Confidence 66
No 117
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=45.58 E-value=23 Score=30.15 Aligned_cols=29 Identities=3% Similarity=-0.213 Sum_probs=24.8
Q ss_pred HHHHHHhCCCCCHHHHhHHHHHHHHHHHH
Q psy16816 382 IANTSLYHVTYPRLFYVGAVPVVFAFVAS 410 (470)
Q Consensus 382 i~~~l~~ge~~s~~~iiG~~lIl~g~~l~ 410 (470)
.+++++++|++.+.++.|.+.++.+++++
T Consensus 78 ~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 78 PFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 35567899999999999999999987754
No 118
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=44.89 E-value=7.2 Score=38.88 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHH-hhccchHHHHHHHhhHHHHHHHHHHH-hcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHH
Q psy16816 201 YTFT-LLGAEAGTVALIYSSSSVLTLLICAF-FPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLV 278 (470)
Q Consensus 201 ~~~~-L~~tsvs~atiL~stsPvft~lla~l-f~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~ 278 (470)
|+|. ++-.+-+..++++|..-+.+.|+-.+ ++ .++-+-..-.+.+++.++-+.+...-... .+.-+.|.++.++
T Consensus 39 w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF--~RrLLCPLGlLCiilimi~lLv~~L~tLt--GQ~LF~Gi~~l~l 114 (381)
T PF05297_consen 39 WFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLF--KRRLLCPLGLLCIILIMIVLLVSMLWTLT--GQTLFVGIVILFL 114 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH--HHhhcCcchHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHH
Confidence 4555 66667777778888776655554443 33 03334555566666555544443332222 1334567665554
Q ss_pred H
Q psy16816 279 S 279 (470)
Q Consensus 279 s 279 (470)
+
T Consensus 115 ~ 115 (381)
T PF05297_consen 115 C 115 (381)
T ss_dssp -
T ss_pred H
Confidence 4
No 119
>KOG1442|consensus
Probab=43.95 E-value=8.6 Score=38.38 Aligned_cols=56 Identities=7% Similarity=0.049 Sum_probs=42.2
Q ss_pred HHHHHHHhhchhHHHHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 356 LWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 356 l~~~ai~~tspl~~tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
+-+++++..+-..=-++-+++.|+++++.+++++++-+...+.+..+|+.||.+-.
T Consensus 118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 33445554322222234568999999999999999999999999999999998755
No 120
>KOG1582|consensus
Probab=42.86 E-value=1.5e+02 Score=29.85 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=58.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHH-hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCc
Q psy16816 185 VAKVAFV-FSFLRFGAEYTFT-LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDV 262 (470)
Q Consensus 185 ~~~l~~~-~~~l~~~~n~~~~-L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~ 262 (470)
+.-.+++ -+..++..++... ++.-.+..+..+...--..|.+++++++ .+.++.....+.++.+.|+.+=.+++.
T Consensus 259 tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllF---sKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 259 TYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLF---SKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHH---cCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 3334333 3344444444444 6667777777777777999999999999 899999999999999999999988885
Q ss_pred c
Q psy16816 263 Y 263 (470)
Q Consensus 263 ~ 263 (470)
.
T Consensus 336 n 336 (367)
T KOG1582|consen 336 N 336 (367)
T ss_pred C
Confidence 4
No 121
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=40.71 E-value=42 Score=28.64 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecC
Q psy16816 222 VLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISD 261 (470)
Q Consensus 222 vft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~ 261 (470)
+..++.++.+- ++|++...++|..++++|+.++....
T Consensus 69 ~~Sl~W~w~vd---g~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 69 VASLLWGWLVD---GVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHHHHhhhc---CcCCChHHHHhHHHHHHhHHheEecC
Confidence 34456677777 99999999999999999999987653
No 122
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=40.55 E-value=43 Score=30.20 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=22.7
Q ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHH
Q psy16816 210 AGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCIS 250 (470)
Q Consensus 210 vs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~ 250 (470)
.=.++.|.|..|+++++++.++. +++...+.+.++.+
T Consensus 74 lL~sA~LvYi~PL~~l~v~~~La----~~L~~~e~~~~~~~ 110 (150)
T COG3086 74 LLKSALLVYIFPLVGLFLGAILA----QYLFFSELIVIFGA 110 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHH
Confidence 33455677778999988888764 44444444444333
No 123
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=40.42 E-value=3.1e+02 Score=25.54 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=30.3
Q ss_pred ccCCCCCh-HHHHHHHHHHHHHHHHHHHHHH-hhccchHHHH
Q psy16816 175 IQSTKYNI-PQVAKVAFVFSFLRFGAEYTFT-LLGAEAGTVA 214 (470)
Q Consensus 175 ~~~~~l~~-~~~~~l~~~~~~l~~~~n~~~~-L~~tsvs~at 214 (470)
+++++++. .+.+.+.+..+++|.+.-|+.. +.+|+++-..
T Consensus 12 ~~~~~~s~~~~~~~iGf~gGliWs~v~yl~y~f~FT~v~P~~ 53 (173)
T PF11085_consen 12 QREKPMSFLAKVLEIGFFGGLIWSLVRYLAYFFHFTEVGPNF 53 (173)
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCh
Confidence 45666665 6688889999999988777776 8888776543
No 124
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=40.30 E-value=4.9e+02 Score=27.86 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=30.6
Q ss_pred cchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHHHHH
Q psy16816 208 AEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFY 283 (470)
Q Consensus 208 tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~ 283 (470)
++-...+.+.-+-.++-+++...=. +.--+...-.+.+++.+.|..+. ...+.|.++.+++.++.
T Consensus 231 ItdP~va~ILl~LG~~gLifel~sp--G~~vpg~iG~i~LlL~f~g~~~~---------~~~~~gllLiilG~iLi 295 (436)
T COG1030 231 ITDPSVALILLLLGFLGLIFELLSP--GFGVPGIIGAILLLLGFYGLLFL---------GINWAGLLLIILGAILI 295 (436)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHHHH
Confidence 3334444444455555555554311 11233333344444444443322 12357888888876654
No 125
>PRK02237 hypothetical protein; Provisional
Probab=38.43 E-value=46 Score=28.52 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeec
Q psy16816 224 TLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTIS 260 (470)
Q Consensus 224 t~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~ 260 (470)
.++..+..- +.|++...++|..++++|+.++...
T Consensus 73 Sl~W~w~vd---g~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 73 SLLWLWVVD---GVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHhc---CcCCChhHHHhHHHHHHhHHHheec
Confidence 345677777 8999999999999999999888654
No 126
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=36.22 E-value=17 Score=35.71 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHH----HHHHHHHHhhe
Q psy16816 183 PQVAKVAFVFSFLRFGAEYTFT--LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCV----TVCISVCGLIL 256 (470)
Q Consensus 183 ~~~~~l~~~~~~l~~~~n~~~~--L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~i----gvll~~~GVvl 256 (470)
.+...+-..-++.|...|.++. -+...++++=.++.+.-+...+=+.+|+ +||=+++++. |+++.++|.++
T Consensus 206 ~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L---~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 206 NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFL---GEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEE---eccCchhhhhhhhhhHHHHHHHhhh
Confidence 3344455567789999998888 3444444444555566666677788889 8998888655 44455555554
Q ss_pred ee
Q psy16816 257 VT 258 (470)
Q Consensus 257 i~ 258 (470)
+.
T Consensus 283 lg 284 (288)
T COG4975 283 LG 284 (288)
T ss_pred hh
Confidence 43
No 127
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=33.46 E-value=6.8e+02 Score=27.46 Aligned_cols=64 Identities=6% Similarity=-0.113 Sum_probs=43.0
Q ss_pred CCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q psy16816 236 SDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKL 299 (470)
Q Consensus 236 ~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~ 299 (470)
.||+..++++.+.+..-+++.+..+-..........=.++++.-|..+|.+..+.+.+.++++-
T Consensus 86 aDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ 149 (511)
T TIGR00806 86 TDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQ 149 (511)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 5999999998888877777766655433222233445677777788887777777777764443
No 128
>TIGR00898 2A0119 cation transport protein.
Probab=32.67 E-value=6.1e+02 Score=26.65 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhc------cchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhe
Q psy16816 184 QVAKVAFVFSFLRFGAEYTFT-LLG------AEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLIL 256 (470)
Q Consensus 184 ~~~~l~~~~~~l~~~~n~~~~-L~~------tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvl 256 (470)
+..+..+.....|+...+.|+ +.+ .+.....++....-+...+++..+ .||+..++.+.+...+.|+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l----~dr~grr~~~~~~~~~~~~~~ 399 (505)
T TIGR00898 324 NLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLL----IDRLGRRYTMAASLLLAGVAL 399 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHH
Confidence 344444455556666555554 111 222333333333333333444443 467776666555554444443
No 129
>PRK11663 regulatory protein UhpC; Provisional
Probab=31.89 E-value=6e+02 Score=26.32 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=15.0
Q ss_pred CCccchhhHHHHHHHHHHhheeee
Q psy16816 236 SDKFSLSKCVTVCISVCGLILVTI 259 (470)
Q Consensus 236 ~ek~s~~k~igvll~~~GVvli~~ 259 (470)
.||+..++++.+.+.+.++..+..
T Consensus 82 ~dr~g~r~~~~~~~~~~~~~~~~~ 105 (434)
T PRK11663 82 SDRSNARYFMGIGLIATGIINILF 105 (434)
T ss_pred HhhcCCchhHHHHHHHHHHHHHHH
Confidence 578887777666665555554433
No 130
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.65 E-value=70 Score=27.26 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecC
Q psy16816 222 VLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISD 261 (470)
Q Consensus 222 vft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~ 261 (470)
+..++..+..- +.+++...++|.++|++|+.++....
T Consensus 70 ~~sL~W~~~Vd---g~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 70 AASLAWLWVVD---GVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHHHHHHHc---CcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 34445566666 89999999999999999999988764
No 131
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=30.75 E-value=8.7e+02 Score=27.89 Aligned_cols=19 Identities=37% Similarity=0.922 Sum_probs=11.3
Q ss_pred CCccchhhHHHHHHHHHHh
Q psy16816 236 SDKFSLSKCVTVCISVCGL 254 (470)
Q Consensus 236 ~ek~s~~k~igvll~~~GV 254 (470)
.+|+..++++-+.+.+.++
T Consensus 226 sDR~GRR~~lii~lil~~i 244 (742)
T TIGR01299 226 ADKLGRKQCLLICLSVNGF 244 (742)
T ss_pred HHHhCcHHHHHHHHHHHHH
Confidence 5788777766555444333
No 132
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=30.57 E-value=4.4e+02 Score=24.42 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=65.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH---hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHH-----
Q psy16816 178 TKYNIPQVAKVAFVFSFLRFGAEYTFT---LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCI----- 249 (470)
Q Consensus 178 ~~l~~~~~~~l~~~~~~l~~~~n~~~~---L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll----- 249 (470)
..++...++.+...-...|.+.+|..- +.|.-.-...++. .+.+=..-.+.. |..++..+.+|+.+
T Consensus 39 ~GM~~AttFV~t~as~~~~~v~~~iL~pl~l~yLRtiafIlVI---Av~VQf~Em~v~---KtsP~LYr~LGIfLPLITT 112 (193)
T COG4657 39 IGMGLATTFVMTLASICAWLVDTFILIPLGLEYLRTIAFILVI---AVVVQFTEMVVR---KTSPTLYRLLGIFLPLITT 112 (193)
T ss_pred hCcchHHHHHHHHHHHHHHHHHhHhhhccChHHHHHHHHHHHH---HHHHHHHHHHHH---ccCHHHHHHHHHhhhhHhh
Confidence 345555677777666777876665544 3332111111111 112222333555 88899999999987
Q ss_pred --HHHHhheeeecCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q psy16816 250 --SVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLR 291 (470)
Q Consensus 250 --~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~r 291 (470)
++.|++++...+.+. ..-..+.++.+++.|++-.++..
T Consensus 113 NCaVLgvaLln~~~~~~----f~qsv~~gf~a~lGfslvmvlfA 152 (193)
T COG4657 113 NCAVLGVALLNINEGHN----FLQSVVYGFGAALGFSLVMVLFA 152 (193)
T ss_pred chHHHHHHHHHhhhhhh----HHHHHHHHhhhHhhHHHHHHHHH
Confidence 467888887766553 35678899999999999998873
No 133
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.12 E-value=3.6e+02 Score=22.87 Aligned_cols=31 Identities=3% Similarity=-0.144 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 381 MIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 381 ~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
+.++++.++|++.|.++.|..++..|++++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 3478889999999999999999999998765
No 134
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=26.49 E-value=7.6e+02 Score=25.83 Aligned_cols=93 Identities=18% Similarity=0.308 Sum_probs=45.8
Q ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHH-HHHHHHHHHHH
Q psy16816 212 TVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVS-ALFYSLYIVFL 290 (470)
Q Consensus 212 ~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~s-Al~~Al~~vl~ 290 (470)
..|.+......++.++...+. ++|++......- .++|.+-++-.-.. -+.+...+.++++ .+++..+..+.
T Consensus 225 ~nT~la~a~g~l~~~~~~~~~---~gk~~~~~~~nG--~laGlVaita~~~~---v~p~~A~~iG~iag~i~~~~~~~l~ 296 (399)
T PF00909_consen 225 VNTLLAAAAGGLTWLLISYLL---SGKWSMVGICNG--ALAGLVAITAGAGY---VTPWGALLIGAIAGLISYFGVSWLL 296 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---CSS--HHHHHHH--HHHHHHHHTTTTTT---S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhhcc---ccccchhhhhhh--hhhhhhheecccCC---CcHHHHHHhhhhHhhhhhhheeccc
Confidence 335555555555555555555 677776544322 22344333332222 2235566667766 44454554455
Q ss_pred HHhccCCchhHHHHHHHHHHHH
Q psy16816 291 RRLEHEEKLDIVLFYGFVGLYN 312 (470)
Q Consensus 291 r~l~~~~~~~~~~~~g~vglf~ 312 (470)
++.+-+|..+..-.-+..|+..
T Consensus 297 ~~~~iDD~~~~~~vHg~~Gi~G 318 (399)
T PF00909_consen 297 KRLKIDDPVGAFAVHGVGGIWG 318 (399)
T ss_dssp HHHTS-HTTGHHHHCHHHHHHH
T ss_pred ceeEeccccceEeeeeccHHHH
Confidence 6666566666655555555543
No 135
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.36 E-value=64 Score=27.81 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCccchhhHHHHHHHHHHhheeeec
Q psy16816 236 SDKFSLSKCVTVCISVCGLILVTIS 260 (470)
Q Consensus 236 ~ek~s~~k~igvll~~~GVvli~~~ 260 (470)
..|++..+-+|+.+.++|++++..+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5688999999999999999988764
No 136
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=25.87 E-value=3.7e+02 Score=21.99 Aligned_cols=46 Identities=33% Similarity=0.446 Sum_probs=26.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Q psy16816 267 LHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLW 317 (470)
Q Consensus 267 ~~~~~G~llaL~sAl~~Al~~vl~r~l~~~~~~~~~~~~g~vglf~l~~l~ 317 (470)
....+|..+++.+...|.+ |..+.|-.-+--.+++.+|++....+|
T Consensus 7 ~~~iLgi~l~~~~~~Ly~l-----r~~~Pev~Rd~D~~fs~vgLl~g~IL~ 52 (84)
T PF07444_consen 7 PSYILGIILILGGLALYFL-----RFFRPEVSRDYDIFFSSVGLLYGLILW 52 (84)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHCcchhhhhhHHHHHHHHHHHHHHH
Confidence 3457899999988888854 333332111222456777776654443
No 137
>KOG1443|consensus
Probab=24.90 E-value=2.2e+02 Score=29.12 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=41.2
Q ss_pred hhccchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhee
Q psy16816 205 LLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 205 L~~tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli 257 (470)
+..|++-..++..---=+-|.++|.++. +|+++..-|+|..++..|+.+=
T Consensus 264 l~~Ts~ltlSIaGI~Kel~tl~la~ii~---~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 264 LSRTSSLTLSIAGIVKEVCTLLLAIIIL---KDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeccceeeeHHHHHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHHHHh
Confidence 6667666666655556778899999999 9999999999999999999876
No 138
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=23.52 E-value=1.1e+02 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=11.3
Q ss_pred HHHHhhHHHHHHHHHHHhc
Q psy16816 214 ALIYSSSSVLTLLICAFFP 232 (470)
Q Consensus 214 tiL~stsPvft~lla~lf~ 232 (470)
+.+.|..|+..++++.++.
T Consensus 71 a~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 71 AFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556777777766653
No 139
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=23.28 E-value=7.1e+02 Score=24.39 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHHhh
Q psy16816 240 SLSKCVTVCISVCGLI 255 (470)
Q Consensus 240 s~~k~igvll~~~GVv 255 (470)
++.+++|+..++.|.-
T Consensus 128 ~RG~vvgilk~~~GLS 143 (250)
T PF06813_consen 128 SRGTVVGILKGFFGLS 143 (250)
T ss_pred ccCceehhhhHHHHhH
Confidence 3456666666665543
No 140
>PRK09577 multidrug efflux protein; Reviewed
Probab=22.95 E-value=3.6e+02 Score=32.18 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.9
Q ss_pred HhHHHH---HHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHH
Q psy16816 374 GLIVPL---SMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411 (470)
Q Consensus 374 ~l~iPl---a~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~ 411 (470)
.+++|+ +.+++.++.|.+++...++|.+ +++|++.-|
T Consensus 896 ~~~iPl~l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivVnn 935 (1032)
T PRK09577 896 MLVVPLGVIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAKN 935 (1032)
T ss_pred HHHhhHHHHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 457788 5567888889999999999988 667776544
No 141
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.94 E-value=4.7e+02 Score=25.69 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=39.4
Q ss_pred HHHHHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhhc
Q psy16816 370 TLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQ 415 (470)
Q Consensus 370 tv~~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~~ 415 (470)
|+.-.++|.+-+..+..++|.+.+.+.....++++++-+..+|.+.
T Consensus 98 TiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~ 143 (309)
T COG5070 98 TIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ 143 (309)
T ss_pred HHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence 3444577777777899999999999999999999999999998865
No 142
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=22.02 E-value=7.9e+02 Score=26.43 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHH
Q psy16816 268 HIPSGSFLSLVSALFYSLYIVFL-RRLEHEEKLDIVLFYGFVGLYNC 313 (470)
Q Consensus 268 ~~~~G~llaL~sAl~~Al~~vl~-r~l~~~~~~~~~~~~g~vglf~l 313 (470)
......++..++.+.|+=.++.- ...+-.++-..-.--|++|+|+-
T Consensus 346 ~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Y 392 (448)
T COG2271 346 YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAY 392 (448)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHH
Confidence 35677788888888888876555 33322233333334555666543
No 143
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=20.63 E-value=2.6e+02 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.254 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16816 267 LHIPSGSFLSLVSALFYSLYIVFLRRLEH 295 (470)
Q Consensus 267 ~~~~~G~llaL~sAl~~Al~~vl~r~l~~ 295 (470)
.....+.+..+++|..|.-|....|++++
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 33467888999999999999999988875
No 144
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=20.48 E-value=5.8e+02 Score=22.29 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=13.0
Q ss_pred HHHHhHHHHHHHHHHHHHhh
Q psy16816 394 RLFYVGAVPVVFAFVASILL 413 (470)
Q Consensus 394 ~~~iiG~~lIl~g~~l~~~~ 413 (470)
...++|..+++.|++.+...
T Consensus 87 ~~~i~g~~~~~~G~~~i~l~ 106 (136)
T PF08507_consen 87 LSIIIGLLLFLVGVIYIILG 106 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777766543
Done!