Query psy16816
Match_columns 470
No_of_seqs 290 out of 1761
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 22:49:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 6.6E-07 2.2E-11 78.7 7.5 71 344-414 34-105 (137)
2 3b5d_A Multidrug transporter E 97.8 0.00011 3.6E-09 62.0 9.9 70 345-414 35-105 (110)
3 3b5d_A Multidrug transporter E 97.8 6.8E-05 2.3E-09 63.2 8.0 65 194-261 38-105 (110)
4 2i68_A Protein EMRE; transmemb 97.6 5E-05 1.7E-09 66.6 5.3 65 194-261 38-105 (137)
5 2zxe_G FXYD10, phospholemman-l 38.1 18 0.00061 27.6 2.3 45 397-460 25-69 (74)
6 3o7q_A L-fucose-proton symport 33.6 3.2E+02 0.011 26.0 13.9 49 208-257 58-106 (438)
7 3aqp_A Probable secdf protein- 13.8 1.2E+03 0.04 25.1 13.9 21 270-290 328-348 (741)
8 4dx5_A Acriflavine resistance 12.5 1.4E+03 0.048 25.4 13.6 53 238-290 363-415 (1057)
9 4dx5_A Acriflavine resistance 10.8 1.6E+03 0.054 25.0 12.8 55 236-290 894-948 (1057)
10 2jp3_A FXYD domain-containing 9.0 2.6E+02 0.0089 20.8 3.1 17 397-413 23-39 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.37 E-value=6.6e-07 Score=78.70 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHH-HHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 344 IEGLIGSVLTETLWLWGMLLTSPLIATLG-LGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 344 ~~gil~s~ls~~l~~~ai~~tspl~~tv~-~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
+.+++++++++++|.+++++.++..+... ..+...++++++++++||++++.+++|.++|++|+++++..+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35566788999999999999888777655 344444499999999999999999999999999999998653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.81 E-value=0.00011 Score=62.01 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHH-HHhHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHHHhhh
Q psy16816 345 EGLIGSVLTETLWLWGMLLTSPLIATLG-LGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLA 414 (470)
Q Consensus 345 ~gil~s~ls~~l~~~ai~~tspl~~tv~-~~l~iPla~i~~~l~~ge~~s~~~iiG~~lIl~g~~l~~~~~ 414 (470)
.++++..+++++|.+++++.+...+... ..+...++++++++++||++++.+++|.++|++|+++.+..+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4555678899999999998777666544 334444499999999999999999999999999999998653
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.76 E-value=6.8e-05 Score=63.19 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=57.0
Q ss_pred HHHHHHHHHHH--hhccchHHHHHH-HhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecC
Q psy16816 194 FLRFGAEYTFT--LLGAEAGTVALI-YSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISD 261 (470)
Q Consensus 194 ~l~~~~n~~~~--L~~tsvs~atiL-~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~ 261 (470)
..+.++.+++. +++.|++.+..+ ..+.|+++.+++++++ +|+++..|++|+++.++|++++...+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~---~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF---GQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555555 999999999888 8999999999999999 99999999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.63 E-value=5e-05 Score=66.63 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=45.7
Q ss_pred HHHHHHHHHHH--hhccchHHHHHH-HhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecC
Q psy16816 194 FLRFGAEYTFT--LLGAEAGTVALI-YSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISD 261 (470)
Q Consensus 194 ~l~~~~n~~~~--L~~tsvs~atiL-~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~ 261 (470)
+.+.++.++++ +++.+++.+..+ .+..|+++.+++++++ +|++++.+++|+++.++|++++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~l---gE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF---GQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHH---C------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455556666 999999999888 8999999999999999 99999999999999999999987654
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=38.07 E-value=18 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHHHHHhhhccccCChhhhhhhhhhhccCCCCCCCCccccCCCchhhhhhhcccC
Q psy16816 397 YVGAVPVVFAFVASILLAQMASRDPVLEILLSCVTSLSGPSLGRTSKKISDADSEQRESLININ 460 (470)
Q Consensus 397 iiG~~lIl~g~~l~~~~~~~~~~d~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~e~l~~~~ 460 (470)
++++++.++|++++...+ ..|+.+. +..+.|++.+.|.|.+|.+.
T Consensus 25 ifA~vLfi~GI~iilS~k----------------crCk~~q---k~~~~p~d~~a~~~~litpg 69 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGK----------------CRCKFNQ---NKRTRSNSGTATAQHLLQPG 69 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC----------------------------------------------
T ss_pred hhHHHHHHHHHHHHHcCc----------------cccCCCC---CCCCCCCccccccccccccC
Confidence 455666666766665432 2343333 12234554445777888744
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=33.58 E-value=3.2e+02 Score=26.04 Aligned_cols=49 Identities=14% Similarity=-0.061 Sum_probs=25.5
Q ss_pred cchHHHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhee
Q psy16816 208 AEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILV 257 (470)
Q Consensus 208 tsvs~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli 257 (470)
.+.+....+.+...+...+...+.. .=.||+..++.+.+...+.++..+
T Consensus 58 ~s~~~~g~~~~~~~~~~~i~~~~~G-~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 58 LTNFQAGLIQSAFYFGYFIIPIPAG-ILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp CCSHHHHHHHHHHHHHHHTTHHHHH-HHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcchHHHHHHHHHHHHHHH
Confidence 4556666666655544333333211 005888888766555544444433
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=13.76 E-value=1.2e+03 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.018 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy16816 270 PSGSFLSLVSALFYSLYIVFL 290 (470)
Q Consensus 270 ~~G~llaL~sAl~~Al~~vl~ 290 (470)
..|.++.++-++=+++..+--
T Consensus 328 i~glil~iGi~VD~~I~i~er 348 (741)
T 3aqp_A 328 IAGLVLTLGAAVDGNVLSFER 348 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHH
Confidence 556666776677777766544
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=12.52 E-value=1.4e+03 Score=25.40 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=27.6
Q ss_pred ccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHHHHHHHHHHHH
Q psy16816 238 KFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFL 290 (470)
Q Consensus 238 k~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~ 290 (470)
|....-++++.++++|.+....--+..-+.....|.+++++=++=+|+..+--
T Consensus 363 ~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~vd~aIv~~~~ 415 (1057)
T 4dx5_A 363 RATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVEN 415 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHeeccccceEEeHHH
Confidence 33444455555555555444322222112334567777777777777766554
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=10.77 E-value=1.6e+03 Score=24.96 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHHHHHHHHHHHH
Q psy16816 236 SDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFL 290 (470)
Q Consensus 236 ~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~ 290 (470)
.=+....-++.+.++++|.+....--+...+-....|.++.++=++=|++..+--
T Consensus 894 s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~ 948 (1057)
T 4dx5_A 894 SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEF 948 (1057)
T ss_dssp CSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcCeEEEehH
Confidence 3444555556666666665543221111111334677777777777888877655
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.96 E-value=2.6e+02 Score=20.79 Aligned_cols=17 Identities=6% Similarity=0.092 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHhh
Q psy16816 397 YVGAVPVVFAFVASILL 413 (470)
Q Consensus 397 iiG~~lIl~g~~l~~~~ 413 (470)
++++++.++|++++...
T Consensus 23 ifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 45566666776666644
Done!