Query psy16816
Match_columns 470
No_of_seqs 290 out of 1761
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 22:49:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16816.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16816hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 16.5 61 0.0044 17.9 2.7 18 270-287 2-19 (27)
2 d1pv7a_ f.38.1.2 (A:) Lactose 16.0 2.9E+02 0.021 22.9 13.4 24 236-259 283-306 (417)
3 d1iwga8 f.35.1.1 (A:513-566,A: 9.5 4.4E+02 0.032 21.4 13.3 77 212-290 58-134 (222)
4 d1e12a_ f.13.1.1 (A:) Halorhod 7.4 5.7E+02 0.041 21.1 10.5 14 219-232 92-105 (239)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 7.4 6E+02 0.044 21.3 15.1 19 236-254 83-101 (447)
6 d1iwga8 f.35.1.1 (A:513-566,A: 6.8 5.8E+02 0.042 20.5 10.1 35 371-405 85-122 (222)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 6.2 8.1E+02 0.059 21.7 20.8 85 218-310 236-321 (383)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.0 8.1E+02 0.059 20.4 8.6 14 380-393 38-51 (248)
9 d1brza_ g.3.7.5 (A:) Brazzein 5.0 89 0.0065 19.6 0.5 11 4-14 14-24 (54)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 4.7 8.5E+02 0.062 20.2 20.7 12 208-219 282-293 (447)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.55 E-value=61 Score=17.86 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy16816 270 PSGSFLSLVSALFYSLYI 287 (470)
Q Consensus 270 ~~G~llaL~sAl~~Al~~ 287 (470)
.+|.+.+-+++++||.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 468888888899998885
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.99 E-value=2.9e+02 Score=22.95 Aligned_cols=24 Identities=0% Similarity=0.090 Sum_probs=13.3
Q ss_pred CCccchhhHHHHHHHHHHhheeee
Q psy16816 236 SDKFSLSKCVTVCISVCGLILVTI 259 (470)
Q Consensus 236 ~ek~s~~k~igvll~~~GVvli~~ 259 (470)
.+|...++.+.+...+.++.++..
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~~~~ 306 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhHHHHHHhhhcc
Confidence 356666666655555555544443
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.51 E-value=4.4e+02 Score=21.39 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=44.2
Q ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHHHHHHHHHHHH
Q psy16816 212 TVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFL 290 (470)
Q Consensus 212 ~atiL~stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sAl~~Al~~vl~ 290 (470)
....+....-++++++-+++++ .=+....-++++.++++|+.....-.....+.....|.++.++-++-+++..+-.
T Consensus 58 ~~~~~~~la~i~i~liL~~~fr--S~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~ 134 (222)
T d1iwga8 58 QAPSLYAISLIVVFLCLAALYE--SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEF 134 (222)
T ss_dssp THHHHHHHHHHHHHHHHHHTTC--SSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhhhhhHHHHHHHH
Confidence 3334444444555555555541 3344444556666777776655433332222445678888888888888888775
No 4
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=7.44 E-value=5.7e+02 Score=21.07 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHhc
Q psy16816 219 SSSVLTLLICAFFP 232 (470)
Q Consensus 219 tsPvft~lla~lf~ 232 (470)
|.|+..+-+..+..
T Consensus 92 TtPLll~~l~l~~~ 105 (239)
T d1e12a_ 92 STPMILLALGLLAD 105 (239)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHC
Confidence 45777776766654
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.39 E-value=6e+02 Score=21.34 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=12.1
Q ss_pred CCccchhhHHHHHHHHHHh
Q psy16816 236 SDKFSLSKCVTVCISVCGL 254 (470)
Q Consensus 236 ~ek~s~~k~igvll~~~GV 254 (470)
.||+..++++.+.+.+.++
T Consensus 83 ~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 83 SDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHH
Confidence 5888888876554444433
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.76 E-value=5.8e+02 Score=20.54 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=24.5
Q ss_pred HHHHhHHHHHH---HHHHHHhCCCCCHHHHhHHHHHHH
Q psy16816 371 LGLGLIVPLSM---IANTSLYHVTYPRLFYVGAVPVVF 405 (470)
Q Consensus 371 v~~~l~iPla~---i~~~l~~ge~~s~~~iiG~~lIl~ 405 (470)
+...+.+|+++ +....+.+.+++....+|.++.+.
T Consensus 85 liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 85 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhh
Confidence 33345677744 466777899999998888777544
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.19 E-value=8.1e+02 Score=21.69 Aligned_cols=85 Identities=16% Similarity=0.197 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhheeeecCcccccccchHHHHHHHHHH-HHHHHHHHHHHHhccC
Q psy16816 218 SSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSA-LFYSLYIVFLRRLEHE 296 (470)
Q Consensus 218 stsPvft~lla~lf~~~~~ek~s~~k~igvll~~~GVvli~~~~~~~~~~~~~~G~llaL~sA-l~~Al~~vl~r~l~~~ 296 (470)
.....++.++...+. ++|++......-. ++|.+-++-..+. -+.+...+.+++++ +++-.+..+.+|++-+
T Consensus 236 ~a~~~~~~~~~~~~~---~~k~~~~~~~nG~--LaGLVaita~~~~---v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iD 307 (383)
T d1u7ga_ 236 TAAAILGWIFGEWAL---RGLPSLLGACSGA--IAGLVGVTPACGY---IGVGGALIIGVVAGLAGLWGVTMLKRLLRVD 307 (383)
T ss_dssp HHHHHHHHHHHHHHH---HSSCCHHHHHHHH--HHHHHHHTTTTTT---SCHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHh---cCCCCHHHHHHHh--hhhhhhcccCccc---cchhhHHHHHhhccHHHHHHHHHHHhhcccc
Confidence 333444444444445 6777766543322 2344444332222 12233455555544 4444455454666656
Q ss_pred CchhHHHHHHHHHH
Q psy16816 297 EKLDIVLFYGFVGL 310 (470)
Q Consensus 297 ~~~~~~~~~g~vgl 310 (470)
|..+..-.=+..|+
T Consensus 308 D~~~~~~vHg~~Gi 321 (383)
T d1u7ga_ 308 DPCDVFGVHGVCGI 321 (383)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred cccceEeehhhhHH
Confidence 66665444444444
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.01 E-value=8.1e+02 Score=20.35 Aligned_cols=14 Identities=7% Similarity=-0.292 Sum_probs=6.3
Q ss_pred HHHHHHHHhCCCCC
Q psy16816 380 SMIANTSLYHVTYP 393 (470)
Q Consensus 380 a~i~~~l~~ge~~s 393 (470)
.+++.++++.++.-
T Consensus 38 ~~~~~~vy~s~r~~ 51 (248)
T d2r6gf1 38 SSAGLYIFANRKAY 51 (248)
T ss_dssp HHHHHHHHSSSCCT
T ss_pred HHheEEEEEccCcc
Confidence 34444455544433
No 9
>d1brza_ g.3.7.5 (A:) Brazzein {J'oublie (Pentadiplandra brazzeana) [TaxId: 43545]}
Probab=4.99 E-value=89 Score=19.63 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=8.0
Q ss_pred cccccchhhhh
Q psy16816 4 SECNTVNICSF 14 (470)
Q Consensus 4 ~~~~~~~~~~~ 14 (470)
|+||..|.|+.
T Consensus 14 skcqlanqcny 24 (54)
T d1brza_ 14 SKCQLANQCNY 24 (54)
T ss_dssp TSCSSSSHHHH
T ss_pred HHHHHhhhcCc
Confidence 67777777764
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.66 E-value=8.5e+02 Score=20.19 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=4.9
Q ss_pred cchHHHHHHHhh
Q psy16816 208 AEAGTVALIYSS 219 (470)
Q Consensus 208 tsvs~atiL~st 219 (470)
.+......+...
T Consensus 282 ~~~~~~~~~~~~ 293 (447)
T d1pw4a_ 282 FALDKSSWAYFL 293 (447)
T ss_dssp CCHHHHHHHHHH
T ss_pred cccchhhhhhhc
Confidence 344444444433
Done!