RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16816
(470 letters)
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 59.5 bits (144), Expect = 9e-10
Identities = 41/228 (17%), Positives = 82/228 (35%), Gaps = 11/228 (4%)
Query: 188 VAFVFSFLRFGAEYTFTLLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTV 247
+ + L A +LI + T L+ ++ SL + + +
Sbjct: 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLL--LLGERLSLLQILGI 131
Query: 248 CISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGF 307
+++ G++L+ + + G L+L +AL ++LY ++RL + + L
Sbjct: 132 LLALAGVLLILLGGGG-GGILSLLGLLLALAAALLWALYTALVKRLSRLGPVTLALLLQL 190
Query: 308 VGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPL 367
+ LLL F + W++LL G+ + L LW + + L
Sbjct: 191 LLA--LLLLLLFFLSGFGAPILSRA------WLLLLYLGVFSTGLAYLLWYYALRLLGAS 242
Query: 368 IATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQ 415
+ L L + + L +GA VV + + L A+
Sbjct: 243 LVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR 290
>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 260
Score = 50.0 bits (120), Expect = 7e-07
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 16/230 (6%)
Query: 181 NIPQVAKVAFVFSFLRFG---AEYTFTLLGAEAGTVALIYSSSSVLTLLICAFFPSSSSD 237
+ + L+ G Y + G AL+ + + L +
Sbjct: 41 PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTL---LSDLMGKE 97
Query: 238 KFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEE 297
+ + + + G +L+ P+G L L S + ++L V +RL +E
Sbjct: 98 RPRKLVLLAAVLGLAGAVLLLSDGNLS---INPAGLLLGLGSGISFALGTVLYKRLVKKE 154
Query: 298 KLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLW 357
+++ F G+V L LLL P F + + SL QW LL GLIG+ L LW
Sbjct: 155 GPELLQFTGWVLLLGALLLLP-FAWFLGPNPQALSL----QWGALLYLGLIGTALAYFLW 209
Query: 358 LWGMLLTSPLIATLGLGLIVPL-SMIANTSLYHVTYPRLFYVGAVPVVFA 406
G+ L P A++ L L PL +++ + T +G ++ A
Sbjct: 210 NKGLTLVDPSAASI-LALAEPLVALLLGLLILGETLSLPQLIGGALIIAA 258
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 34.6 bits (79), Expect = 0.12
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 29/207 (14%)
Query: 149 SDKEANEALLARLSYQATLRTADFTFIQSTKYNIPQVAKVA-----FVFSFLRFGAEYTF 203
+++ A+E LA+ Y+ ++ Q + + +A +A FV F+ AE
Sbjct: 139 AERRADEEELAQ-QYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDL 197
Query: 204 TLLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDV- 262
+ + G + LI L +++ AFF +DK +C+ +C+SV G S V
Sbjct: 198 CIPDSGKGMLGLIV----YLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ 253
Query: 263 -YMEHL--HIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLD-IVLFYGFVGLYNCLLLWP 318
Y L + SG + + +S + FL + + E L + +F+ G+Y + W
Sbjct: 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313
Query: 319 LFFLLHY------------NSWEVFSL 333
+ + HY +SW VF +
Sbjct: 314 I--IPHYGWSFQMGSAYQFHSWRVFVI 338
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family. This family
includes many hypothetical membrane proteins of unknown
function. Many of the proteins contain two copies of the
aligned region. The family used to be known as DUF6.
Length = 126
Score = 31.8 bits (73), Expect = 0.27
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 281 LFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWV 340
L ++LY VF ++L E++ + F + L +LL L FLL F+L +
Sbjct: 1 LSWALYFVFSKKLL--ERISPLTFTAYRFLIAGILLILLLFLLRKP----FALLSLKAIL 54
Query: 341 ILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGA 400
LL GL G+ L L+ + + S A++ L ++I + L +G
Sbjct: 55 ALLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGI 114
Query: 401 VPVVFA 406
V ++
Sbjct: 115 VLILLG 120
>gnl|CDD|183131 PRK11427, PRK11427, multidrug efflux system protein MdtO;
Provisional.
Length = 683
Score = 31.4 bits (71), Expect = 1.3
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 352 LTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASI 411
+ +TL LW + L+ + + +P ++ L++ FY V ++F VA++
Sbjct: 30 VPQTLQLW---VGCLLVILISMTFEIPFLALSLAVLFYGIQSNAFYTKFVAILF-VVATV 85
Query: 412 L 412
L
Sbjct: 86 L 86
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 30.6 bits (70), Expect = 1.9
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 338 QWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPL--SMIANTSLYHV----- 390
+ G + L T +L LI T+ + LIV SM L H
Sbjct: 211 ALFSAITSGNLTLALLLTTRGLLLL---GLITTIVIFLIVVYLESMRVEIPLSHGRVRGA 267
Query: 391 --TYP-RLFYVGAVPV--VFAFVASILL 413
YP + YV +PV V A A+I L
Sbjct: 268 RGRYPLKFIYVSVLPVILVRALQANIQL 295
>gnl|CDD|110325 pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family
includes the following members: FlhB, HrpN, YscU, SpaS,
HrcU SsaU and YopU. All of these proteins export
peptides using the type III secretion system. The
peptides exported are quite diverse.
Length = 343
Score = 30.3 bits (69), Expect = 2.0
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 351 VLTETLWLWGMLLTSPLIATLGLGLIV-PLSM-IANTSLYHVTYPRLFYVGAVPVVFAFV 408
+ L+L G + LIA L L LI+ PL ++ T L+ + L V + +F +
Sbjct: 37 AGSAYLFLLGSVFARRLIALLLLTLILIPLPFSLSVTDLFSLVVLLLLTVLLLLSLFVAL 96
Query: 409 ASILLAQMASRDPVL 423
L + + +
Sbjct: 97 LVGLASNLLQVGFLF 111
>gnl|CDD|234384 TIGR03896, cyc_nuc_ocin, bacteriocin-type transport-associated
protein. Members of this protein family are
uncharacterized and contain two copies of the cyclic
nucleotide-binding domain pfam00027. Members are
restricted to select cyanobacteria but are found
regularly in association with a transport operon that,
in turn, is associated with the production of putative
bacteriocins. The models describing the transport operon
are TIGR03794, TIGR03796, and TIGR03797.
Length = 317
Score = 29.9 bits (67), Expect = 3.2
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 18/91 (19%)
Query: 91 SASRGLHGKVLFSGRSS-GTESETENSMRKHVRFSKLT------------ERP---QVLG 134
A+ L +L G + T +N + + ++L+ RP +
Sbjct: 24 KAADFLF--ILLDGTFTVTTPQPEDNPLTRAFELARLSRGEIVGEMSLLETRPPVATIKA 81
Query: 135 VPASFLMEAPVRHLSDKEANEALLARLSYQA 165
VP S +M PV L+ K ++ A Y+A
Sbjct: 82 VPKSRVMSIPVGELAAKLQSDVGFAAHFYRA 112
>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase.
Length = 536
Score = 29.3 bits (66), Expect = 4.7
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 132 VLGVPASFLMEAP-------VRHLSDKEANEALLARLSYQATLRTADFTFIQSTK 179
+LGVP +FL P VR L D AL LR D FI S K
Sbjct: 400 LLGVPEAFLKRHPFPGPGLAVRVLGDVTEGNAL-------DILRQVDEIFINSIK 447
>gnl|CDD|227339 COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid
transport and metabolism].
Length = 292
Score = 28.9 bits (65), Expect = 5.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 245 VTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRR 292
V V ++V G+ L+ + L P G L+L + ++LYIV +R
Sbjct: 123 VWVALAVLGIWLLLPLGQSVWSLD-PVGVALALGAGACWALYIVLGQR 169
>gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 618
Score = 28.6 bits (64), Expect = 7.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 155 EALLARLSYQATLRTADFTFIQS 177
+ LL R YQ T R DF F+ S
Sbjct: 357 KQLLERFEYQCTKRARDFRFLYS 379
>gnl|CDD|114908 pfam06216, RTBV_P46, Rice tungro bacilliform virus P46 protein.
This family consists of several Rice tungro bacilliform
virus P46 proteins. The function of this family is
unknown.
Length = 392
Score = 28.5 bits (63), Expect = 8.2
Identities = 17/56 (30%), Positives = 20/56 (35%)
Query: 304 FYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLWLW 359
FYGF + + P F Y SWE D V + I V E W W
Sbjct: 312 FYGFSPIKPYEPITPEEFGFDYYSWENIVEDDEADVVYISINTKDSKVTKEHAWAW 367
>gnl|CDD|224214 COG1295, Rbn, Ribonuclease BN family enzyme [Replication,
recombination, and repair].
Length = 303
Score = 28.4 bits (64), Expect = 8.4
Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 274 FLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSL 333
F L+S + L R +VL + L LLL L F L Y L
Sbjct: 157 FALLLSVVGPIALQALLLRFGLPFFDVLVLILLRLRLLVSLLLLTLGFFLLY-----RFL 211
Query: 334 PDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYP 393
P+ V+ + L G++L L+ + G + S AN Y TY
Sbjct: 212 PNV--RVLKWRDVLPGALLAAILF---------ELGKYLFGYYL--SNFAN---YSSTYG 255
Query: 394 RLFYVGAVPVVFAFV 408
L G+V ++ ++
Sbjct: 256 AL---GSVIILLLWL 267
>gnl|CDD|237947 PRK15338, PRK15338, type III secretion system regulator InvE;
Provisional.
Length = 372
Score = 28.3 bits (63), Expect = 9.6
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 148 LSDKEANEA---------LLARLSYQATLRTADFTFIQS-------TKYNIPQVAKVAFV 191
L+D +AN+A LL RL+ LR+AD F+++ +N + + + +
Sbjct: 228 LTDIDANDASCSRLEFGQLLRRLTQLKMLRSADLLFVKTLLSYPFTKAFNAEESSWLLLM 287
Query: 192 FSFLRFGAEYTFTLLGAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSL 241
S L+ E +LL G AL+ S L+ A + + SL
Sbjct: 288 LSLLQQ-PEEVDSLLADILGLNALL-LSHKDHASLLQAIYQVCKALPSSL 335
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.408
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,581,638
Number of extensions: 2349211
Number of successful extensions: 3198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3170
Number of HSP's successfully gapped: 166
Length of query: 470
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 370
Effective length of database: 6,502,202
Effective search space: 2405814740
Effective search space used: 2405814740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)