RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16816
(470 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 37/217 (17%), Positives = 61/217 (28%), Gaps = 50/217 (23%)
Query: 3 KSECNTVN--ICSFLNVLLSRFQRH---ALGCF---VLI---LVDILWA-LSSEIVKKVD 50
C+ + I S LNVL R L F I L+ ++W + V V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 51 QHVEDESYFTDQTEPPGELKFPLHNLFIQVFLLVSIKKLQSASRGLHGKVLFSGRSSGTE 110
+ S Q P E + ++++ +K LH ++
Sbjct: 409 NKLHKYSLVEKQ---PKESTISIPSIYL------ELKVKLENEYALHRSIV--------- 450
Query: 111 SETENSMRKHVRFSKLTERPQVL-GVPASFLMEAPVRHLSDKE-ANEALLARLSYQATLR 168
+ F P L S + HL + E L R+ +
Sbjct: 451 ----DHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEHPERMTLFRMVFL---- 498
Query: 169 TADFTFIQS----TKYNIPQVAKVAFVFSFLRFGAEY 201
DF F++ + L+F Y
Sbjct: 499 --DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Score = 42.5 bits (99), Expect = 3e-04
Identities = 59/418 (14%), Positives = 126/418 (30%), Gaps = 118/418 (28%)
Query: 19 LSRFQRHALGCFVLILVDILWALSSEIVKKVDQHVEDESYFTDQTEPPGELKFPLHNLFI 78
L R + L+++ + +++ + + + L
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQ--NAKAWNAFN--------LSCKI------------LLT 271
Query: 79 ----QVFLLVSIKKLQSASRGLHGKVLFSGRSSGTESETENSMRK--HVRFSKLTER--- 129
QV +S S H L T E ++ + K R L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTL-------TPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 130 --PQVLGVPASFLMEAPVR-----HLSDKEANEALLARLSYQ--ATLRTA--DFT-FIQS 177
P+ L + A + + H++ + + + L+ A R + F S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 178 TKYNIPQVAKVAFVFSFLRFGAEYTFTLLGAEAGTVALIYSSSSVLTLLICAFFPSSSS- 236
+IP + + S + F + V ++ + +L+ S+ S
Sbjct: 385 A--HIPTI-----LLSLIWFDVIKS---------DVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 237 ------------DKFSLSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSL-VSALFY 283
++++L + +I D Y S + + FY
Sbjct: 429 PSIYLELKVKLENEYALHR--------------SIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 284 SLYIVF-LRRLEHEEKLD----IVLFYGFVG--LYNCLLLW----PLFFLLH----YNSW 328
S +I L+ +EH E++ + L + F+ + + W + L Y +
Sbjct: 475 S-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 329 EVFSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIANTS 386
+ P ++ V +++ L E L+ S L + L+ I +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKI---EE-----NLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 41.0 bits (95), Expect = 8e-04
Identities = 74/477 (15%), Positives = 138/477 (28%), Gaps = 146/477 (30%)
Query: 31 VLILVDILWALSSEIVKKVDQHVEDESY-F------TDQTEPPGELKF------PLHNLF 77
L L L + E+V+K + V +Y F T+Q +P + L+N
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND- 122
Query: 78 IQVF-------------LLVSIKKLQSASR-GLHGKVLFSGRSSGTESETENSMRKHVRF 123
QVF L ++ +L+ A + G VL SG++ + S + +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVA-LDVCLSYKVQCKM 180
Query: 124 SKLTERPQVLGVPASFLMEAPVRHLSDKEANEALLARLSYQATLRTADFTFIQSTKYNIP 183
+ F + +++ + E +L +L YQ ++T NI
Sbjct: 181 D--------FKI---FWLN--LKNCNSPETVLEMLQKLLYQID---PNWTSRSDHSSNIK 224
Query: 184 Q-VAKVAFVFSFLRFGAEYTFTLLGAEAGTVAL--IYSSSSVLTLLICAFFPSSSSDKFS 240
+ + L Y LL V L + ++ + + F+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLL------V-LLNVQNAKAW--------------NAFN 263
Query: 241 LSKCVTVCISVCGLILVTISDVYMEHLHIPSGSFLSLVSALFYSLYIVFLRR-LEHEEKL 299
L C IL+T L +A + + L +E
Sbjct: 264 L-SCK---------ILLTTRF---------KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 300 DIVLFYGFVGLYNCLLLWPLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETL--W 357
L ++ LP +I + + L W
Sbjct: 305 S--LLLKYLDC------------------RPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 358 -LWGMLLTSPLIATLGLGLIVPLSMIANTSLYHVTYPRLFYVGAVPVVF-------AFVA 409
W + L + L L Y ++F + VF +
Sbjct: 345 DNWKHVNCDKLTTIIESSL---------NVLEPAEYRKMFDRLS---VFPPSAHIPTILL 392
Query: 410 SILLAQMASRDPVLEILLSCVTSLSGPSLGRTSKKISDADSEQRESLININMCDQEV 466
S++ + D + ++ K S + + +ES I+I E+
Sbjct: 393 SLIWFDVIKSDV-MVVVNKLH-------------KYSLVEKQPKESTISIPSIYLEL 435
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 58/378 (15%), Positives = 109/378 (28%), Gaps = 127/378 (33%)
Query: 13 SFLNVLLSRFQRHALGCFVLILVDILWALSSEIVKKVDQHVEDESYFTDQTEPPGELKFP 72
FL + S + +G F +L L + ++ D H + + K
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 73 LHNLF-IQVFLLVSIKK------LQSASRGLHGKV--LFSG------------------- 104
+ N ++ K ++ G + ++ +F G
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 105 --------RSSGT-ESETENSMRKHVRFSK-------LTE---RPQVLGVPASFLMEAPV 145
S+ T ++ F++ L P +L+ P+
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-----DKDYLLSIPI 236
Query: 146 RH-LSDKEANEALLARLSYQATLRTADFTFIQSTKYNIPQVAKVAFVFSFLRFGAEYTFT 204
L ++ Y T + FT P + S+L+
Sbjct: 237 SCPLI------GVIQLAHYVVTAKLLGFT---------P-----GELRSYLK-------G 269
Query: 205 LLGAEAGTV-ALIYSSSS-----------VLTLLICAF---------FPSSSSDKFSLSK 243
G G V A+ + + +T+L F +P++S L
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL---FFIGVRCYEAYPNTSLPPSILED 326
Query: 244 CVTVC-------ISVCGLILVTISDVYMEHL--HIPSGS--FLSL--------VSALFYS 284
+ +S+ L + D Y+ H+P+G +SL VS S
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQD-YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 285 LY--IVFLRRLEHEEKLD 300
LY + LR+ + LD
Sbjct: 386 LYGLNLTLRKAKAPSGLD 403
Score = 45.4 bits (107), Expect = 4e-05
Identities = 61/377 (16%), Positives = 110/377 (29%), Gaps = 131/377 (34%)
Query: 10 NICSFLNVLLSRFQ--RHALGCFVLILVDILWALSSEIVKKVDQHVEDESYFTD------ 61
N + L +Q +G + + L L ++ E FT
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR-------TTLDAEKVFTQGLNILE 217
Query: 62 -----QTEPPGE------LKFPLHNLFIQ-----VFLLV---SIKKLQSASRGL--HGKV 100
P + + PL + IQ V + + +L+S +G H +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 101 LFSGR---SSGT-ESETENSM-----------RKHVRFSKLTERPQVL--------GVPA 137
L + + + ES + R + + + P +L GVP+
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 138 SFLMEAPVRHLSDKE-------ANEAL-------------------------LARLSYQA 165
M + + +L+ ++ N L L L
Sbjct: 337 P--MLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL--NL 391
Query: 166 TLR--TADFTFIQSTKYNIP--QVAKVAFVFSFLRFGAEY-------TFTLLGAEAGTVA 214
TLR A QS IP + K+ F FL + + L+ +
Sbjct: 392 TLRKAKAPSGLDQS---RIPFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 215 LIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVCGLILVTISDVYMEHL------H 268
+ +++ + I + SD LS ++ + I+ V E H
Sbjct: 448 VSFNAKD---IQIPVYDTFDGSDLRVLSGSISE--RIVDCIIRLP--VKWETTTQFKATH 500
Query: 269 I----PSGSFLSLVSAL 281
I P G+ S + L
Sbjct: 501 ILDFGPGGA--SGLGVL 515
Score = 45.0 bits (106), Expect = 6e-05
Identities = 70/412 (16%), Positives = 114/412 (27%), Gaps = 146/412 (35%)
Query: 129 RPQVL--G-------VPAS-----------FL--MEAPVRHL-SDKE--ANEALLAR-LS 162
RP L G VP + F + P +D E L+ + L
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 163 YQATLRTADFTFIQSTKYNIPQVAKVAFV-F--SFLRFGAE---YTFTLLGAEAGTVA-- 214
Y ++L S QV + F +L G + LL T+
Sbjct: 67 YVSSLVE------PSKVGQFDQVLNLCLTEFENCYLE-GNDIHALAAKLLQENDTTLVKT 119
Query: 215 --LI---YSSSSVLTLLIC-----AFFPSSSSDKFSLSKCVTVCISVC---GLILVTISD 261
LI ++ + A F + L +++ G +D
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-------VAIFGGQG-----NTD 167
Query: 262 VYMEHLHIPSGSFLSLVSALFYSLYIVFLRRLEHEEKLDIVLFYGFVGLYNCLLLW---- 317
Y E L ++ LV L + + V G N +L W
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----N-ILEWLENP 222
Query: 318 ----PLFFLLHYNSWEVFSLPDRDQWVILLIEGLIGSVLTETLWLWGMLLTSPLIATLGL 373
+LL S P LIG + + L ++ L
Sbjct: 223 SNTPDKDYLLSI----PISCP------------LIG--VIQ--------LAHYVVTAKLL 256
Query: 374 GLIVPLSMIANTSLYHVTYPRLFYVGAVPVVFAFVASILLAQMASRDP-------VLEIL 426
G P + + GA V ++ +A+ S + + +L
Sbjct: 257 GF-TPGELRSYLK------------GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 427 ----LSC-----VTSLSGPSLGRTSKK-----------ISDADSEQRESLIN 458
+ C TSL PS+ S + IS+ EQ + +N
Sbjct: 304 FFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Score = 39.3 bits (91), Expect = 0.003
Identities = 46/247 (18%), Positives = 68/247 (27%), Gaps = 75/247 (30%)
Query: 42 SSEIVKKV----DQHVEDESYFTDQ---TEPPGELKFPLHNLFIQVFLLVSIKKLQSASR 94
+S+ + V D H +D F+ P L H F K++ R
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI--H------FGGEKGKRI----R 1685
Query: 95 GLHGKVLFSGRSSGTESETE-----NSMRKHVRFS------KLTERPQVLGVPASFLME- 142
+ ++F G + N F T+ Q PA LME
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ----PALTLMEK 1741
Query: 143 APVRHLSDKEA----NEALLARLS---YQATLRTADFTFIQSTKYNIPQVAKVAFVFSFL 195
A L K +A A S Y A L + +A V S
Sbjct: 1742 AAFEDL--KSKGLIPADATFAGHSLGEYAA-L-----------------AS-LADVMSI- 1779
Query: 196 RFGAEYTFTLL---GAEAGTVALIYSSSSVLTLLICAFFPSSSSDKFSLSKCVTVCISVC 252
E ++ G VA+ + A P + FS V V
Sbjct: 1780 ----ESLVEVVFYRG-MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 253 ---GLIL 256
G ++
Sbjct: 1835 KRTGWLV 1841
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.58
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 31/58 (53%)
Query: 85 SIKKLQSASRGLHGKVLFSGRSSGTESETENSMRKHVRFSKLTERPQVLGVPASFLME 142
++KKLQ++ + L++ S+ P L + A+ ME
Sbjct: 21 ALKKLQASLK------LYADDSA----------------------P-ALAIKAT--ME 47
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 29.1 bits (66), Expect = 3.5
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 347 LIGSVLTETLWLWGMLLTSPLIATLGLGLIVPLSMIA 383
++T + M + +++ + L IVPL+++
Sbjct: 158 FFSGIVTLAGAVIMMFRVNVILSLVTL-SIVPLTVLI 193
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; HET: NAD; 1.95A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3
Length = 367
Score = 28.2 bits (62), Expect = 6.1
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 121 VRFSKLTERPQVLGV---PASFLMEAPVRHLSDKEANEALLA 159
VR +K+ + + G +++LM++P L D A L
Sbjct: 322 VRAAKIAKDRGIGGPVIPASAYLMKSPPEQLPDDIARAQLEE 363
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 27.9 bits (61), Expect = 9.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 143 APVRHLSDKEANEALLARLSYQATLR 168
HL KE ++LL + A LR
Sbjct: 258 LLTIHLKSKEIWKSLLQDMPLTALLR 283
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.408
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,743,999
Number of extensions: 395642
Number of successful extensions: 749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 19
Length of query: 470
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 373
Effective length of database: 3,993,456
Effective search space: 1489559088
Effective search space used: 1489559088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.6 bits)