RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16816
         (470 letters)



>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 359

 Score = 29.1 bits (65), Expect = 1.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 144 PVRHLSDKEANEALLARLSYQATLR 168
              HL  KE  ++LL  +   A LR
Sbjct: 255 LTIHLKSKEIWKSLLQDMPLTALLR 279


>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
           capensis omega virus [TaxId: 12541]}
          Length = 539

 Score = 27.3 bits (60), Expect = 5.5
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 8/128 (6%)

Query: 110 ESETENSMRKHVRFSKLTERPQVLGVPASFLMEAPVRHLSDKEANEALLARLSYQATLRT 169
            + T+N++               +    +    +     S    + A +   + Q   R 
Sbjct: 210 IATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRH 269

Query: 170 ADFTFIQST-KYNIPQVAKVAFVFSFLRFGAEY-------TFTLLGAEAGTVALIYSSSS 221
             F        Y IP+   + +  +       +       TF   G  AGT A I  ++ 
Sbjct: 270 GGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAP 329

Query: 222 VLTLLICA 229
            +TL I A
Sbjct: 330 TVTLTILA 337


>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
           {Bacillus subtilis [TaxId: 1423]}
          Length = 68

 Score = 24.7 bits (54), Expect = 6.1
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 103 SGRSSGTESETENSMRKHVRFSKLTERPQVLGVPASFLME 142
           +G +    S  E +++ +     L +   VL V    L++
Sbjct: 24  AGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,604,656
Number of extensions: 70606
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 4
Length of query: 470
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 381
Effective length of database: 1,185,626
Effective search space: 451723506
Effective search space used: 451723506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)