BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16818
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 95.1 bits (235), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/64 (54%), Positives = 52/64 (81%)
Query: 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL 285
+PF+C+ICR +F++PV+TKC+HYFC CALEHF+ TP+CYIC + T G F A++++ KL
Sbjct: 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKL 73
Query: 286 KDAG 289
+ +G
Sbjct: 74 QKSG 77
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271
+C IC F + V C H FC+ C E K+ +C IC+K+
Sbjct: 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271
+C IC F + V C H FC+ C E K+ +C IC+K+
Sbjct: 65 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271
+C IC F + V C H FC+ C E K+ +C IC+K+
Sbjct: 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 230 CYICRNSFKDPVMTKCKHYFCTKCALEHFK 259
C IC + DPV T CKH FC C L K
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLK 55
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 230 CYICRNSFKDPV-MTKCKHYFCTKCALEHF---KKTPKCYICQKNT 271
C IC+ D +T+C H FC C + HF + PKC I T
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHF--KKTP-KCYICQ 268
+C IC K+PV TKC H FC C L+ KK P +C +C+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 230 CYICRNSFKDPVMTKCKHYFCTKCAL---EHFKKTPKCYIC 267
C +C K+PV+ +C H FC C E ++ C +C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 230 CYICRNSFKDPVM-------TKCKHYFCTKCALEHFKKTPKCYICQK 269
C IC + + + V T+C H FC++C + K C C+K
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 59
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 230 CYICRNSFKDPVM-------TKCKHYFCTKCALEHFKKTPKCYICQK 269
C IC + + + V T+C H FC++C + K C C+K
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 56
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 230 CYICRNSFKDPVM-------TKCKHYFCTKCALEHFKKTPKCYICQK 269
C IC + + + V T+C H FC++C + K C C+K
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 121
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 230 CYICRNSFKDPVM-------TKCKHYFCTKCALEHFKKTPKCYICQK 269
C IC + + + V T+C H FC++C + K C C+K
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 52
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 168 YQPDICKDYKETGFCGFGDSCKFLH 192
Y+ ++C+ ++E+G C +G+ C+F H
Sbjct: 4 YKTELCRPFEESGTCKYGEKCQFAH 28
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 168 YQPDICKDYKETGFCGFGDSCKFLHD 193
Y+ ++C+ + GFC +G C F+H+
Sbjct: 42 YKTELCRTFHTIGFCPYGPRCHFIHN 67
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 230 CYICRNSFKDPVM-------TKCKHYFCTKCALEHFKKTPKCYICQK 269
C IC + + + V T+C H FC++C + K C C+K
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 64
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 32.0 bits (71), Expect = 0.62, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEF 275
+C IC + PV CKH FC C +C +C++ +F
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 230 CYICRNSFKDPVMTKCKHYFCTKCALE------HFKKTPKC 264
C IC + + PV C H FC KC + F K P C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK 259
++C IC + ++ V T C H FC C ++ +
Sbjct: 7 YECPICLMALREAVQTPCGHRFCKACIIKSIR 38
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 230 CYICRNSFKDPVMTKCKHYFCTKC 253
C IC K+PV C H FC C
Sbjct: 22 CPICLELLKEPVSADCNHSFCRAC 45
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 168 YQPDICKDYKETGFCGFGDSCKFLH 192
Y+ ++C+ Y E+G C +G C+F H
Sbjct: 10 YKTELCRTYSESGRCRYGAKCQFAH 34
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 168 YQPDICKDYKETGFCGFGDSCKFLHDRTD 196
Y+ ++C +K G C +G C F+H+ T+
Sbjct: 48 YKTELCHKFKLQGRCPYGSRCHFIHNPTE 76
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 230 CYICRNSFKDPVMTKCKHYFCTKCALE------HFKKTPKC 264
C IC + + PV C H FC KC + F K P C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK 259
++C IC + ++ V T C H FC C ++ +
Sbjct: 26 YECPICLMALREAVQTPCGHRFCKACIIKSIR 57
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 230 CYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYIC 267
C +C F D + +C H FC C + + + + C IC
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 230 CYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYIC 267
C +C F D + +C H FC C + + + + C IC
Sbjct: 14 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 230 CYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYIC 267
C +C F D + +C H FC C + + + + C IC
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK 259
++C IC + ++ V T C H FC C ++ +
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKSIR 50
>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
Domains Of Traf2
Length = 141
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPK-CYIC 267
+ C CRN + P +C H +C+ C P+ C C
Sbjct: 32 YLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAAC 72
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 242 MTKCKHYFCTKCALEHFKKTPK 263
M CKH FC CA+ H KK K
Sbjct: 17 MIPCKHVFCYDCAILHEKKGDK 38
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 228 FKCYICRNSFKDPV-MTKCKHYFCTKCALEHF-KKTPKCY 265
+C C N ++PV + C+H FC+ C + P CY
Sbjct: 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCY 62
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 230 CYICRNSFKDPVMTKCKHYFCTKCALEHFKKT------PKCYICQ 268
C IC P+ C H FC C + KK+ C +C+
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 333 AREQQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKN 392
+RE LID D IR++ W FT + +QL + KEN V+ +
Sbjct: 270 SREGSLIDMGVDQGLIRKSGAW---FTYEGEQLGQG--KENARNFLVEN---------AD 315
Query: 393 IRDQLEKKLKQ 403
+ D++EKK+K+
Sbjct: 316 VADEIEKKIKE 326
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 220 SDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273
+DEE+ C IC + D ++ C H FC KC + + C IC+ G
Sbjct: 13 TDEEE-----CCICMDGRADLIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCAL 255
++C IC + ++ V T C H FC C +
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACII 46
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 202 QLEQEHEDGDNKNYEIPDSDEEDHLPF-----KCYICRNSFKDPVM---TKCKHYFCTKC 253
+L ++ GD K + ++ LP+ C +C + +DP+ + C+HY C C
Sbjct: 15 RLVLNYDPGDPKAF----TEINRLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTC 70
Query: 254 ALEHFKKTPKCYICQ 268
+ P C C+
Sbjct: 71 KGKKMMMKPSCSWCK 85
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK----KTPKCYICQKNTFGE--FRTAEKI 281
F C C+ PV T+C H C C FK P C ++ G+ +I
Sbjct: 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPAC----RHDLGQNYIMIPNEI 134
Query: 282 VQKLKD 287
+Q L D
Sbjct: 135 LQTLLD 140
>pdb|2LK0|A Chain A, Solution Structure And Binding Studies Of The Ranbp2-Type
Zinc Finger Of Rbm5
pdb|2LK1|A Chain A, Solution Structure And Binding Studies Of The Ranbp2-Type
Zinc Finger Of Rbm5
Length = 32
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 244 KCKHYFCTKCALEHFKKTPKCYICQKNTF 272
K + + C KC L +F+K KC+ C + F
Sbjct: 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKF 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,211,430
Number of Sequences: 62578
Number of extensions: 461405
Number of successful extensions: 1084
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 59
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)