BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16818
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1
Length = 343
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 166/324 (51%), Positives = 224/324 (69%), Gaps = 24/324 (7%)
Query: 1 MFKK--RQVKQNTRKRQ------NDSESESEDETQIVRKEKK-IREDPNFQKT---TKQT 48
+FKK R+ RKR +S S S++ +VR EKK + +P QKT KQ
Sbjct: 18 LFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKRVTHNPMIQKTRDSGKQK 77
Query: 49 KAAKPQVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKS 108
A + E + +GV YKS +S+ GP DMGATA E++TE ++DAQAI+E+S
Sbjct: 78 AAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFERS 137
Query: 109 LKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDY 168
KI EL+GKEDDK+YRG+ NY +Y + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDY
Sbjct: 138 QKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDY 197
Query: 169 QPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEE 223
QPDICKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G +++NYE+ DEE
Sbjct: 198 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEVGSDDEE 257
Query: 224 DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQ 283
+PFKC+ICR SF++PV+TKC+HYFC CAL+HF+ TP+CY+C + T G F A++++
Sbjct: 258 --IPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIA 315
Query: 284 KLK-----DAGDIKTMAKDSDSDS 302
KL+ G + +D D D+
Sbjct: 316 KLEKHRATGEGGASDLPEDPDEDA 339
>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1
Length = 343
Score = 318 bits (815), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 167/323 (51%), Positives = 226/323 (69%), Gaps = 24/323 (7%)
Query: 1 MFKK--RQVKQNTRKR------QNDSESESEDETQIVRKEKK-IREDPNFQKT---TKQT 48
+FKK R+V RKR DS S S++ +VR EKK +P QKT KQ
Sbjct: 18 LFKKPGRKVAAGRRKRPICNQESGDSSSSSDEGNTVVRPEKKRAVHNPMIQKTRGSGKQK 77
Query: 49 KAAKPQVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKS 108
A + E + S +GV YKS +S+ GP DMGATA E++TE ++DAQAI+E+S
Sbjct: 78 VAYGDLSSEEEEENKSESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFERS 137
Query: 109 LKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDY 168
KI EL+G+EDDK+YRG+ NY ++ + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDY
Sbjct: 138 QKIQEELRGQEDDKIYRGINNYQKFMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDY 197
Query: 169 QPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEE 223
QPDICKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G +++NYE+ SDEE
Sbjct: 198 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEV-GSDEE 256
Query: 224 DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQ 283
+ +PFKC+ICR +F++PV+TKC+HYFC CAL+HF+ TP+CY+C + T G F A++++
Sbjct: 257 E-IPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIA 315
Query: 284 KLK-----DAGDIKTMAKDSDSD 301
KL+ + G +D D D
Sbjct: 316 KLEKHRAAEGGGASGFPEDPDED 338
>sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3
Length = 322
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 139/298 (46%), Positives = 198/298 (66%), Gaps = 18/298 (6%)
Query: 1 MFKK--RQVKQNTRKR-----QNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKP 53
+FKK R+ RKR ++ S S DE V + ++ P + + KAA
Sbjct: 21 LFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPPRVAPRPRGLHSWQ--KAAHG 78
Query: 54 QVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINA 113
E+ S + V Y+S +S+ GP DMGATA E +TE + I + S ++
Sbjct: 79 DRRGEEAAPES--LDVVYRSTRSAKPVGPEDMGATADFEQDTEKEHHTPTILKCSQRVQE 136
Query: 114 ELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDIC 173
L+G+E D +YRG+ +Y +Y + KDT+ GN++SG RKGPIRAP ++R+TVRWDYQPDIC
Sbjct: 137 ALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAPGHLRATVRWDYQPDIC 196
Query: 174 KDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHLPF 228
KDYKETGFCGFGDSCKFLHDR+DYK GW++E+E E+G +++N+E+ EE+ +PF
Sbjct: 197 KDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEGRYCICEDENHEV--GSEEEEIPF 254
Query: 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLK 286
+C+ICR +F++PV+TKC+HYFC CALEHF+ TP+CYIC + T G F A++++ KL+
Sbjct: 255 RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 312
>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans
GN=rnf-113 PE=2 SV=2
Length = 384
Score = 244 bits (623), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 190/290 (65%), Gaps = 21/290 (7%)
Query: 11 TRKRQNDSESESEDETQIVRKEKKIREDPNFQKTTK---QTKAAKPQVEDSESDESSCQV 67
RK+++ S+ + + E + V ++++ R +P Q T + T+ A +DS+ + + +
Sbjct: 15 VRKKESSSDEDQDSEVKDVIQKRR-RTNPMVQSTKQLDASTRRADNSSDDSDDSDDNQDI 73
Query: 68 GVSYKSRKSSARDGPS---DMGATATLEIETETDKDAQAIYEK---SLKINAELKGKEDD 121
V+ S +S GPS D GATATLE++T+ DAQA +E+ LK E GK
Sbjct: 74 AVATHSFAASGDAGPSGPRDQGATATLEVDTDYSHDAQAQFERVQQQLKEGVEKDGK--- 130
Query: 122 KVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGF 181
+Y+G A Y E KDTA+GNAASG+ R GP+RAP +R TVRWD+ PDICKDYKETGF
Sbjct: 131 ILYKGSALYGAK-EAKDTAKGNAASGYNRVGPVRAPQFLRQTVRWDFAPDICKDYKETGF 189
Query: 182 CGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHLPFKCYICRNS 236
C FGDSCKF+HDR+DYK+GW++++E+E G D+ NYEI + D D P C+IC N
Sbjct: 190 CTFGDSCKFVHDRSDYKHGWEIDEEYEAGKYGAEDDANYEIHEGD--DTFPEDCFICGNP 247
Query: 237 FKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLK 286
F DP++TKCKHYFCT CAL+ F+K+ KC ICQ+NT TA++++ LK
Sbjct: 248 FVDPIVTKCKHYFCTGCALKSFQKSSKCPICQQNTENIMNTAKELLTYLK 297
>sp|Q9FNG6|C3H51_ARATH Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis
thaliana GN=At5g06420 PE=2 SV=1
Length = 378
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 181/313 (57%), Gaps = 43/313 (13%)
Query: 1 MFKKRQVKQNTRKRQNDSESE---SEDETQIVRKEKKI-REDPN--FQKTTKQTKAAKPQ 54
FKK +N RKR D++ E S+ E+ I++ KK+ + D N F + P+
Sbjct: 70 FFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYFSSGPSTRTSGAPE 129
Query: 55 VEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLK-INA 113
D SS ++ V +D GATATLE ET+ ++DA+AI E+ LK +
Sbjct: 130 RPVFHYD-SSKEIQVQ------------NDSGATATLETETDFNQDARAIRERVLKKADH 176
Query: 114 ELKGKE----DDKVYRGLANYAQY---FEKKDTAQGNAASGFVRKGPIRAPANVRSTVRW 166
LKG + D+K+Y+G+ Y + F ++ T A G GP+RA A++R + R+
Sbjct: 177 ALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGG--SHGPLRASAHIRVSARF 234
Query: 167 DYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGD-----NKNYEI---- 217
DYQPDICKDYKETG+CG+GDSCKFLHDR DYK GWQ+E+E E+ + NK +
Sbjct: 235 DYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDDD 294
Query: 218 -----PDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272
++E+ LPF C+ICR F DPV+TKCKHYFC CAL+H K KC++C + T
Sbjct: 295 DEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTM 354
Query: 273 GEFRTAEKIVQKL 285
G F A +I +++
Sbjct: 355 GIFNAAHEIKKRM 367
>sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis
thaliana GN=At1g01350 PE=2 SV=2
Length = 343
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 182/310 (58%), Gaps = 34/310 (10%)
Query: 1 MFKKRQVKQNTRKRQNDSESE---SEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQVED 57
FKK +N RKR D++ E S+ E+ I++ KK+ + P+ K + +K
Sbjct: 32 FFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAK-PD-SKLYFSSGPSKSSTTT 89
Query: 58 SESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLK-INAELK 116
S + E S Y S K +D GATATLE ET+ ++DA+AI E+ LK + LK
Sbjct: 90 SGAPERSV---FHYDSSKEIQVQ--NDSGATATLETETDFNQDARAIRERVLKKADEALK 144
Query: 117 GKE----DDKVYRGLANYAQY---FEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQ 169
G + D+K+Y+G+ Y + F ++ T A G GP+RA A++R + R+DYQ
Sbjct: 145 GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGG--SHGPLRASAHIRVSARFDYQ 202
Query: 170 PDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGD-----NKNYEI------- 217
PDICKDYKETG+CG+GDSCKFLHDR DYK GWQ+E+E E+ + NK +
Sbjct: 203 PDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDEDDEA 262
Query: 218 --PDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEF 275
++E+ LPF C+ICR F DPV+TKCKHYFC CAL+H K KC++C + T G F
Sbjct: 263 DKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIF 322
Query: 276 RTAEKIVQKL 285
A +I +++
Sbjct: 323 NAAHEIKKRM 332
>sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa
subsp. japonica GN=Os02g0301000 PE=2 SV=1
Length = 326
Score = 201 bits (512), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 142/232 (61%), Gaps = 31/232 (13%)
Query: 83 SDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDD-----------KVYRGLANYA 131
+D ATATLE ETE D+DA+AI E+ LK E K +VY+G+ Y
Sbjct: 91 TDSRATATLETETEFDRDARAIRERQLKQAEESLKKNPSAPASSSGSGSGEVYKGIHGYT 150
Query: 132 QY---FEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSC 188
Y F ++ T A G GP+RA A++R + R+DYQPDICKDYKETG+CG+GDSC
Sbjct: 151 DYKAGFRREHTVSSEKAGG--SHGPLRASAHIRLSARFDYQPDICKDYKETGYCGYGDSC 208
Query: 189 KFLHDRTDYKYGWQLEQEHE------------DGDNKNYEIPDSDEEDH---LPFKCYIC 233
KF+HDR DYK GWQ+E+E E GD +YE + D++D LPF CYIC
Sbjct: 209 KFMHDRGDYKSGWQIEKEWEEAEKARKRRIAMGGDGSDYEAGEEDDDDDEEALPFACYIC 268
Query: 234 RNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL 285
R F DPV+TKCKHYFC CAL+H K KC++C K T G F A++I +K+
Sbjct: 269 REPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNKPTLGIFNAAQEIRKKM 320
>sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=CWC24 PE=3 SV=1
Length = 355
Score = 185 bits (470), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 110/169 (65%), Gaps = 7/169 (4%)
Query: 121 DKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETG 180
D +YRG +YA + +D +S +GPIR VR+T DYQPD+CKDYKETG
Sbjct: 154 DGLYRGAKSYASFTRTRDDG---CSSKMRSRGPIRQTTTVRTTSLIDYQPDVCKDYKETG 210
Query: 181 FCGFGDSCKFLHDRTDYKYGWQLE----QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNS 236
+CGFGD+CKFLHDR+DY GWQL+ +N + DSD ED +PF C ICR +
Sbjct: 211 YCGFGDTCKFLHDRSDYLAGWQLDVLPNSSSRTRENMLSDPEDSDTEDDIPFACLICRKA 270
Query: 237 FKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL 285
F DPV+T+C HYFC+ CA++ F K KC+ C + T G F +A+K+++++
Sbjct: 271 FTDPVVTRCAHYFCSSCAIKRFAKNSKCFACGQQTGGLFNSAKKVLERM 319
>sp|P0CQ64|CWC24_CRYNJ Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC24 PE=3 SV=1
Length = 329
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 120/189 (63%), Gaps = 9/189 (4%)
Query: 98 DKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEK-KDTAQGNAASGFVRKGPIRA 156
D D Q +K ++++ + + DD +YRG + Y K ++T ++ GPI+A
Sbjct: 112 DVDGQGQRDKKVRLDEDGEIVTDDGLYRGASAYLPTINKTRETLDKK-----MKSGPIKA 166
Query: 157 PANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYE 216
++VR+ DYQPD+CKDYKETGFCG+GDSCKFLHDR DY GWQL++ E+G + E
Sbjct: 167 TSHVRTITLMDYQPDVCKDYKETGFCGYGDSCKFLHDRGDYLAGWQLDKLPEEGVREVEE 226
Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276
DEE+ +PF C ICR F PV+TKC HYFC CA + F+K+PKCY C T G F
Sbjct: 227 ---EDEEEEVPFACLICRQPFTQPVVTKCGHYFCMGCAAKRFQKSPKCYACGAPTQGIFN 283
Query: 277 TAEKIVQKL 285
A+K++ K+
Sbjct: 284 IADKVIAKI 292
>sp|P0CQ65|CWC24_CRYNB Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC24 PE=3
SV=1
Length = 329
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 120/189 (63%), Gaps = 9/189 (4%)
Query: 98 DKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEK-KDTAQGNAASGFVRKGPIRA 156
D D Q +K ++++ + + DD +YRG + Y K ++T ++ GPI+A
Sbjct: 112 DVDGQGQRDKKVRLDEDGEIVTDDGLYRGASAYLPTINKTRETLDKK-----MKSGPIKA 166
Query: 157 PANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYE 216
++VR+ DYQPD+CKDYKETGFCG+GDSCKFLHDR DY GWQL++ E+G + E
Sbjct: 167 TSHVRTITLMDYQPDVCKDYKETGFCGYGDSCKFLHDRGDYLAGWQLDKLPEEGVREVEE 226
Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276
DEE+ +PF C ICR F PV+TKC HYFC CA + F+K+PKCY C T G F
Sbjct: 227 ---EDEEEEVPFACLICRQPFTQPVVTKCGHYFCMGCAAKRFQKSPKCYACGAPTQGIFN 283
Query: 277 TAEKIVQKL 285
A+K++ K+
Sbjct: 284 IADKVIAKI 292
>sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24
PE=3 SV=1
Length = 339
Score = 165 bits (417), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 118/216 (54%), Gaps = 36/216 (16%)
Query: 121 DKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETG 180
D Y+G ANY+ + +K A + GPI+AP NVR+ D+ PD+CKD+K+TG
Sbjct: 130 DGTYKGAANYSSFIQKNPNAPTK------QFGPIKAPTNVRTVTVMDFAPDVCKDWKQTG 183
Query: 181 FCGFGDSCKFLHDRTDYKYGWQLEQEHE----------------DGDNKN----YEIPDS 220
FCGFGDSCKFLH R DYK GW+L++E E GD K + D
Sbjct: 184 FCGFGDSCKFLHAREDYKQGWELDREWEIGTKGKQLSGRVVSKRSGDAKTAEDDEDDDDE 243
Query: 221 DEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEK 280
+ + +PF C IC++S+K P++TKC HYFC CAL+ ++K P C C T G F A+K
Sbjct: 244 ELLESIPFACIICKSSYKSPIVTKCGHYFCESCALQRYRKNPSCAACGAGTGGVFNVAKK 303
Query: 281 I----------VQKLKDAGDIKTMAKDSDSDSDEKS 306
+ +KL++ + SD + DE+S
Sbjct: 304 LNHLLDKKRERARKLREQAIAEGEEVSSDEEGDEES 339
>sp|Q7SDY3|CWC24_NEUCR Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=cwc-24 PE=3 SV=1
Length = 405
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 33/195 (16%)
Query: 118 KEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYK 177
+E D YRGLAN A Y +K A + GPI+AP+N+R+ D PD+CKDYK
Sbjct: 178 REPDGTYRGLANQASYIQKNPNAPNR------KVGPIKAPSNIRTITITDMAPDVCKDYK 231
Query: 178 ETGFCGFGDSCKFLHDRTDYKYGWQLEQEHED--GDNKNYE---IPDSDEED-------- 224
+TGFCGFGD+CKFLH R DY +GWQL++E E+ KN + + +D +
Sbjct: 232 QTGFCGFGDNCKFLHAREDYAHGWQLDKEWENVTKGKKNLQGTVVASADRRNKPKNTAEE 291
Query: 225 -------------HLPFKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKCYICQKN 270
++PF C ICR + + PV+T+C HYFC CAL+ ++K P C C
Sbjct: 292 EEDADAAEEALLENIPFACIICRGPYSNSPVVTRCGHYFCEACALKRYRKDPSCAACGSG 351
Query: 271 TFGEFRTAEKIVQKL 285
T G F A+++ + L
Sbjct: 352 TNGVFNAAKRLAKLL 366
>sp|Q55G16|RN113_DICDI RING finger protein 113 homolog OS=Dictyostelium discoideum
GN=rnf113 PE=4 SV=1
Length = 355
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 22/184 (11%)
Query: 120 DDKVYRGLANYAQYFEKKD--TAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYK 177
DD +YRG+ +Y+ + EKK T +G G V+ GP++ + + R D+QPD+CKDYK
Sbjct: 164 DDGIYRGMKSYSTFVEKKSDLTYKG----GGVKAGPMKTSTTFKLSNRIDHQPDVCKDYK 219
Query: 178 ETGFCGFGDSCKFLHDRTDYKYGWQLEQEHED---------------GDNKNYEIPDSDE 222
+TG C FGD+CKFLHDR+DYK GWQ+++E+E+ +N N D E
Sbjct: 220 QTGQCTFGDACKFLHDRSDYKSGWQIDKEYEEEQKQKRLNNINGIKNNNNDNKNNDDDKE 279
Query: 223 EDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRT-AEKI 281
+ PF C+IC+ + DPV TKCKH+FC CAL H +K KC +C + T G F T +KI
Sbjct: 280 QQQFPFACFICKKQYVDPVQTKCKHFFCEDCALTHNRKNKKCALCGEPTLGTFITPPKKI 339
Query: 282 VQKL 285
+ +L
Sbjct: 340 LDQL 343
>sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24
PE=3 SV=1
Length = 332
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 102/177 (57%), Gaps = 22/177 (12%)
Query: 121 DKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETG 180
D Y+G ANY + +K A A F GPI+AP NVR+ DY PD+CKDYK TG
Sbjct: 122 DGTYKGAANYQSFIQKNPNAP---AKTF---GPIKAPTNVRTVTFMDYAPDVCKDYKLTG 175
Query: 181 FCGFGDSCKFLHDRTDYKYGWQLEQEHE----------------DGDNKNYEIPDSDEED 224
+CGFGDSCKF H R DYK GW+L+++ E G E + ++ +
Sbjct: 176 YCGFGDSCKFSHMREDYKQGWELDRDWEVSTKGKNLGGKVVSQRGGQAGEDEDDEEEQLE 235
Query: 225 HLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKI 281
++PF C IC+ +++P++TKC HYFC CAL+ ++K P C C T G F A+K+
Sbjct: 236 NIPFACIICKKPYQNPIVTKCGHYFCESCALQRYRKNPSCAACGAGTGGVFNVAKKL 292
>sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1
Length = 259
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query: 154 IRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNK 213
I P N+R+TV D+QPD+CKDYK+TG+CG+GDSCKFLH R D+K GW+L QE + D +
Sbjct: 125 INQPTNIRTTVLMDFQPDVCKDYKQTGYCGYGDSCKFLHSRDDFKTGWKLNQEW-NADKE 183
Query: 214 NYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273
+ + D E +PFKC +C+ +K PV+T C HYFC C + KK KC+IC K T G
Sbjct: 184 DSKAVTLDLE-KIPFKCTLCKEDYKSPVVTNCGHYFCGSCFAKDMKKGTKCFICHKETHG 242
Query: 274 EFRTAEKIVQKL 285
+ A + + L
Sbjct: 243 SAKVASDLQKML 254
>sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24
PE=3 SV=1
Length = 250
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 6/149 (4%)
Query: 158 ANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEI 217
+NVR+ V DYQPD+CKDY++TGFCG+GDSCKFLH R D++ GW+L +E + G + ++
Sbjct: 92 SNVRTRVVMDYQPDVCKDYRQTGFCGYGDSCKFLHSRDDFRAGWRLNEEWKVGQTEARDL 151
Query: 218 PDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRT 277
D +PF+C +CR ++ PV T+C HYFC C ++T +C +C +T G ++
Sbjct: 152 ------DSIPFRCVLCRGHYRAPVRTRCGHYFCGGCFARRVRETRQCAVCGADTQGVAQS 205
Query: 278 AEKIVQKLKDAGDIKTMAKDSDSDSDEKS 306
A ++ + L D+ ++ + +S
Sbjct: 206 AARLRELLAAGAGAGDSPDDTPAEEEPRS 234
>sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC24 PE=3 SV=1
Length = 256
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 84/132 (63%), Gaps = 12/132 (9%)
Query: 154 IRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHE----- 208
++A +N++ST DYQPD+CKDYK TGFCG+GDSCKFLH R DYK GWQ+E+E E
Sbjct: 118 LKASSNIKSTTSQDYQPDVCKDYKLTGFCGYGDSCKFLHMREDYKAGWQIEREWEIKNRE 177
Query: 209 -------DGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT 261
G +++ + S + +P C IC+ FK PV+T+C HYFC KC L KK
Sbjct: 178 DDPPRDAGGVSRDADTATSRADSGIPDTCPICQGEFKSPVVTQCCHYFCEKCFLAKHKKK 237
Query: 262 PKCYICQKNTFG 273
C++C KNT G
Sbjct: 238 QNCFVCGKNTNG 249
>sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf24 PE=1 SV=1
Length = 533
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%), Gaps = 9/145 (6%)
Query: 152 GPIRA--PANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQE--- 206
GP+ + + VR DYQPD+CKDYK TG+CG+GD+CKFLH R DYK GWQL++E
Sbjct: 167 GPVLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDREWDS 226
Query: 207 ----HEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTP 262
++ G + +++++ +PF C IC+ ++ P+ T C H+FC +CA+ ++KTP
Sbjct: 227 VQEKYKKGAKLEEGMVKNEKKEDIPFVCLICKKDYRSPIATTCGHHFCEQCAITRYRKTP 286
Query: 263 KCYICQKNTFGEFRTAEKIVQKLKD 287
C C +T G F + + LK+
Sbjct: 287 TCIQCGADTKGLFSVDKNFDRLLKN 311
>sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC24 PE=3 SV=1
Length = 226
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 85/132 (64%), Gaps = 11/132 (8%)
Query: 154 IRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNK 213
I+ AN+R+T+ D+QPD+CKD+K+TG+CG+GDSCKFLH R D+K GW L
Sbjct: 94 IQQAANLRNTILTDFQPDVCKDFKQTGYCGYGDSCKFLHSRDDFKAGWTLAT-------- 145
Query: 214 NYEIPDSDEE---DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKN 270
+++I + EE + +PFKC +C+ S++ PV T C HYFC KC + K C+IC +N
Sbjct: 146 DWKIDEQKEETRKEAVPFKCVLCKESYERPVKTNCGHYFCQKCFVNRIKIDKSCFICGEN 205
Query: 271 TFGEFRTAEKIV 282
T G + A +V
Sbjct: 206 TEGIAKMATDLV 217
>sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC24 PE=3 SV=1
Length = 229
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 116/207 (56%), Gaps = 11/207 (5%)
Query: 82 PSDMGATATLEIETET-DKDAQAIYEKSLKINAELKGKEDDKVYRGLAN-YAQYFEKKDT 139
P D G TA E + E ++D +A+Y + E + + K L + E+K
Sbjct: 30 PKDTGKTAVAEAQVEVENEDKRALYLAKEREEQEQELELRRKERTVLEQEIDEDIERKAK 89
Query: 140 AQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKY 199
A+ SGFV+ P+ N+++ DYQPDICKD+++TG+CG+GDSCKFLH R D
Sbjct: 90 AK---VSGFVK--PVSK--NMKTVTITDYQPDICKDFQKTGYCGYGDSCKFLHSRDDVAG 142
Query: 200 GWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK 259
GW+L + + + + E E + +PF+C++C+ + PV+TKC HYFC+ C ++ K
Sbjct: 143 GWKLNTDWKVDETQEKE--VLKELEEIPFRCFLCKKEYTSPVVTKCNHYFCSSCFMKQMK 200
Query: 260 KTPKCYICQKNTFGEFRTAEKIVQKLK 286
+ C IC K T G + A K+ + LK
Sbjct: 201 VSTNCPICGKETEGAAKMATKLRKLLK 227
>sp|Q5ACW2|CWC24_CANAL Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC24 PE=3 SV=1
Length = 216
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 86/141 (60%), Gaps = 8/141 (5%)
Query: 138 DTAQGNAASGFVRKGPIRA-PANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTD 196
D A S +KG ++ AN+++T+ D+QPD+CKD+++ G+CG+GD+CKFLH R +
Sbjct: 68 DAAAVEVVSQKSKKGELKPLAANIKTTIITDFQPDVCKDFQQIGYCGYGDTCKFLHVRDE 127
Query: 197 YKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALE 256
+ ++++ E G K + E++ +PFKC +C++ +K P+ T+C H FC C L+
Sbjct: 128 SRQKIPIKKDWEIGGQKEVK-----EKEDIPFKCVLCKSDYKSPIKTECGHIFCKACFLD 182
Query: 257 HFKKTPK--CYICQKNTFGEF 275
+K K C+IC K T G
Sbjct: 183 RYKAKKKGTCFICHKETNGTM 203
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 1 MFKKRQVKQN--TRKRQNDSESESED--ETQIVRKEKKIREDPNFQKTTKQTKAAKPQ-- 54
MFKKR +K + ++++ D SED +TQ+ +K I + + QK + + PQ
Sbjct: 1 MFKKRVIKDSRVSKRKIGDINEASEDAPDTQVTKKSTLITKKSDIQKKSVVMPRSSPQTP 60
Query: 55 VEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAI 104
+ S SD+++ VS KS+K + +++ T + + + KD Q I
Sbjct: 61 LSKSSSDDAAAVEVVSQKSKKGELKPLAANIKTTIITDFQPDVCKDFQQI 110
>sp|Q6BYU0|CWC24_DEBHA Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC24 PE=3 SV=2
Length = 232
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 86/139 (61%), Gaps = 6/139 (4%)
Query: 138 DTAQGNAASGFVRKGPIRAPA-NVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTD 196
D A + ++G GPI+ P ++++T D+QPD+CKD+ +TG+CG+GD+CKFLH R +
Sbjct: 82 DQATTDKSAGEKSVGPIKPPPISIKTTTITDFQPDVCKDFLQTGYCGYGDTCKFLHIRDE 141
Query: 197 YKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALE 256
K +E+E E + + PD +E +P++C +C + PV T+C H FC KC +
Sbjct: 142 SKQRKPIEKEWETVTEQ--QKPDKSKE-QVPYRCVLCSKDYTSPVKTECNHLFCQKCFMN 198
Query: 257 HFK--KTPKCYICQKNTFG 273
++ K P C+IC K+T G
Sbjct: 199 RYRNLKKPNCFICGKDTGG 217
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 210 GDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
D K ++P E D L +C+IC++ K+PV+T C H FC+ C + PKC +C
Sbjct: 8 ADFKKSKVPQLQELDDL-LRCHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCPLCLH 66
Query: 270 NTFGEFRTAEKIVQKLKDA 288
+E +V ++ +
Sbjct: 67 ELRESMLRSEYLVNEITET 85
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276
IP+ + D L +C+IC++ + PV+T+C H FC+ C E+ K +C +C E R
Sbjct: 20 IPELADLDSL-LRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLC----LAELR 74
Query: 277 TAEKIVQKLKDAGDI 291
+ ++QK G++
Sbjct: 75 --QNMLQKEFLVGEL 87
>sp|P10862|RAD18_YEAST Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RAD18 PE=1 SV=1
Length = 487
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276
IP + D L +C+IC++ K PV+T C H FC+ C H P C +C EFR
Sbjct: 16 IPSLYQLDTL-LRCHICKDFLKVPVLTPCGHTFCSLCIRTHLNNQPNCPLC----LFEFR 70
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272
+P+ E D L +CYIC+ K PV+T C H FC+ C E+ C +C+ F
Sbjct: 24 LPNLKELDSLQ-RCYICKEFLKAPVITSCNHTFCSHCIREYLIVNSHCPLCKAEQF 78
>sp|Q4I7N9|BRE1_GIBZE E3 ubiquitin-protein ligase BRE1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BRE1 PE=3
SV=1
Length = 703
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 198 KYGWQLEQEHEDGDN-KNYEIPDSDEEDHL--PFK-CYICRNSFKDPVMTKCKHYFCTKC 253
K +LE +D DN KN + +S EE+ + F C ICRN+FK+ + C H FC +C
Sbjct: 615 KMKVRLEHAQKDRDNWKNKALSNSSEEEEMLRTFALCTICRNNFKNTALKTCGHLFCNQC 674
Query: 254 ALEHFK-KTPKCYICQK 269
+ + KC C +
Sbjct: 675 VDDRISNRMRKCPTCSR 691
>sp|Q5A4N5|RAD18_CANAL Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=RAD18 PE=3
SV=1
Length = 378
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 210 GDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
D K ++P E D L +CYIC++ PV T+C H +C++C E + +C +C+
Sbjct: 10 SDFKTTKLPALAELDILK-RCYICKDLLNAPVRTQCDHTYCSQCIREFLLRDNRCPLCKT 68
Query: 270 NTF 272
F
Sbjct: 69 EVF 71
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276
+P + D L +C+IC++ K V+T C H FC+ C ++ +K KC +C +
Sbjct: 20 VPQLTDLDSL-LRCHICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTESML 78
Query: 277 TAEKIVQKL 285
E +VQ++
Sbjct: 79 QKEFLVQEI 87
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQ 268
+C IC F+ P++T C H FC+ C ++ ++ P C C+
Sbjct: 27 LRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACR 67
>sp|Q5BK82|TRI69_RAT E3 ubiquitin-protein ligase TRIM69 OS=Rattus norvegicus GN=Trim69
PE=2 SV=1
Length = 499
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 211 DNKNYEIPDSDEEDHLP-----------FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK 259
D NY + SD HLP C +C + F+DP+M C H FC C ++K
Sbjct: 12 DPGNY-VEVSDPSTHLPSKVVIQDITTELHCPLCNDWFRDPLMLTCGHNFCQACIQNYWK 70
Query: 260 K------TPKC-YICQKNTFGEFRTAEKIVQKLKDAGDIK 292
P+C +CQ + EK+V+K+K +K
Sbjct: 71 MQAKETFCPECKMLCQYSNCTFNLVLEKLVEKIKRLPLLK 110
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 205 QEHEDGDNKNYEI--PDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTP 262
E++DG + EI PD D++ C IC KD +T C H FC C + H +
Sbjct: 29 HENDDGGSGGSEIGAPDLDKD----LLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKS 84
Query: 263 KCYICQKN 270
C C ++
Sbjct: 85 DCPCCSQH 92
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQ 268
F+C++C++ + P++T C H FC+ C KC +C+
Sbjct: 32 FRCHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLCR 72
>sp|Q02398|RAD18_EMENI Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1
Length = 443
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 215 YEIPDSDEEDHLPF----------KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKC 264
++IPDS + P +C +C++ F +PV+T C H FC+ C KC
Sbjct: 5 FDIPDSTDWLDTPLTLLAPFETSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKC 64
Query: 265 YICQ 268
C+
Sbjct: 65 PTCR 68
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 213 KNYEIPDSDEEDHLPF----------KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTP 262
+ +++PDS + P +C +C++ F +PV+T C H FC+ C
Sbjct: 3 QTFDLPDSTDWLETPLSLVSPLESSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEG 62
Query: 263 KCYICQKN 270
KC C+ +
Sbjct: 63 KCPACRSS 70
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKC-----YICQKNTFGEFRTAEKIV 282
F C IC KD +T C H FC C + H + C Y+ N F F +K++
Sbjct: 45 FLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNF-LLDKLL 103
Query: 283 QKLKD 287
+K D
Sbjct: 104 KKTSD 108
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
+C IC DPV++ C H FC C ++ ++P+C C+ F +V +
Sbjct: 167 LECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCR------FGLPSPVVLEHAK 220
Query: 288 AGDIKTMAKDSDSD 301
+ I T +D D
Sbjct: 221 SHSITTFLRDFYPD 234
>sp|Q60MF5|RN207_CAEBR Probable RING finger protein 207 homolog OS=Caenorhabditis briggsae
GN=CBG23170 PE=4 SV=3
Length = 836
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
P +C IC+N F++P++ C+H C KC+ +P C C
Sbjct: 5 PLRCTICKNDFEEPILFSCQHTTCRKCS----NGSPSCKTC 41
>sp|Q05568|PEX10_YEAST Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX10 PE=1 SV=1
Length = 337
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 200 GWQLEQEHE--DGDNKNYEIPDSDEED--HLPF------KCYICRNSFKDPVMTKCKHYF 249
G Q EHE +G K ++ + D LPF KC +C + DP C H F
Sbjct: 246 GLQERSEHESIEGIPKESQLTHINLSDKNQLPFIPEASRKCILCLMNMSDPSCAPCGHLF 305
Query: 250 CTKCALEHFKKTPKCYICQKN 270
C C + K+ P+C +C+++
Sbjct: 306 CWSCLMSWCKERPECPLCRQH 326
>sp|Q9BVG3|TRI62_HUMAN Tripartite motif-containing protein 62 OS=Homo sapiens GN=TRIM62
PE=2 SV=1
Length = 475
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 230 CYICRNSFKDPVMTKCKHYFCTKCALEHFKK--------TPKCYICQKNTFGEFRTAEKI 281
C IC + ++DPV C+HYFC +C EH+ + P+C + TF E A +
Sbjct: 11 CSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPEC----RRTFAEPALAPSL 66
>sp|Q80V85|TRI62_MOUSE Tripartite motif-containing protein 62 OS=Mus musculus GN=Trim62
PE=2 SV=1
Length = 475
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Query: 230 CYICRNSFKDPVMTKCKHYFCTKCALEHFKK--------TPKCYICQKNTFGE 274
C IC + ++DPV C+HYFC +C EH+ + P+C + TF E
Sbjct: 11 CSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPEC----RRTFAE 59
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQ 268
F+C +C +PV T C H FC KC P C +C+
Sbjct: 447 FECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCK 487
>sp|Q20548|RN207_CAEEL Probable RING finger protein 207 homolog OS=Caenorhabditis elegans
GN=F47G9.4 PE=4 SV=2
Length = 822
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
P +C IC+N F++P++ C+H C KC+ +P C C
Sbjct: 5 PLQCTICKNEFEEPILLSCQHTTCRKCS----TGSPSCKSC 41
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
+C IC S DPV+T C H C +C L + ++P C +C
Sbjct: 1039 ECPICLESADDPVLTPCAHRMCRECLLTSW-RSPSCGLC 1076
>sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus GN=Rnf114 PE=2 SV=1
Length = 229
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 204 EQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTP 262
+ E DG ++ + P S+ + F C +C F+ PV C H FC+ C E K K P
Sbjct: 5 QPESRDGAAQSAK-PASETDPLSRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLKPKKP 63
Query: 263 KCYICQKNTFGEFRTAE 279
C +C+ R AE
Sbjct: 64 VCGVCRSALAPGVRAAE 80
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRT 277
+C IC F + V C H FC+ C E K+ +C IC+K+ + R+
Sbjct: 403 LQCIICSEYFVEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIKSKTRS 452
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 210 GDNKNYEIPDS--DEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKC---ALEHFKKTPKC 264
GD +P + D D +C +C F +PV T C H FC KC L+H K P C
Sbjct: 407 GDKPALSLPLASFDASD---LECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLC 463
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
FKC C DPV C H FC C +C +C
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALC 195
>sp|Q86WT6|TRI69_HUMAN E3 ubiquitin-protein ligase TRIM69 OS=Homo sapiens GN=TRIM69 PE=1
SV=2
Length = 500
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 220 SDEEDHLP-----------FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK------TP 262
+D HLP C +C + F+DP+M C H FC C + ++ P
Sbjct: 20 NDSITHLPSKVVIQDITMELHCPLCNDWFRDPLMLSCGHNFCEACIQDFWRLQAKETFCP 79
Query: 263 KC-YICQKNTFGEFRTAEKIVQKLKDAGDIK 292
+C +CQ N +K+V+K+K +K
Sbjct: 80 ECKMLCQYNNCTFNPVLDKLVEKIKKLPLLK 110
>sp|Q6Q0C0|TRAF7_HUMAN E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1
SV=1
Length = 670
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 222 EEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYI 266
E+ + C +C + FKDPV+T C H FC +CAL K+ KC +
Sbjct: 123 EQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCAL----KSEKCPV 163
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 210 GDNKNYEIPDS--DEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKC---ALEHFKKTPKC 264
GD +P + D D +C +C F +PV T C H FC KC L+H K P C
Sbjct: 448 GDKPALSLPLASFDASD---LECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLC 504
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
FKC C DPV C H FC C +C +C
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALC 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,100,973
Number of Sequences: 539616
Number of extensions: 6527389
Number of successful extensions: 37414
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 587
Number of HSP's that attempted gapping in prelim test: 35379
Number of HSP's gapped (non-prelim): 2408
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)