Query psy16818
Match_columns 403
No_of_seqs 434 out of 1824
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:51:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1813|consensus 100.0 4.1E-67 9E-72 502.7 10.6 262 26-291 39-305 (313)
2 COG5152 Uncharacterized conser 100.0 7.1E-42 1.5E-46 312.4 3.1 134 153-288 124-257 (259)
3 PF15227 zf-C3HC4_4: zinc fing 99.1 4.4E-11 9.6E-16 85.3 2.4 38 230-267 1-42 (42)
4 smart00504 Ubox Modified RING 99.0 3.5E-10 7.5E-15 86.1 4.8 57 228-284 2-59 (63)
5 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.7E-10 5.9E-15 79.6 2.1 38 230-267 1-39 (39)
6 PLN03208 E3 ubiquitin-protein 98.9 6E-10 1.3E-14 103.6 4.2 47 226-272 17-79 (193)
7 KOG0317|consensus 98.9 5.8E-10 1.3E-14 108.5 2.7 47 226-272 238-284 (293)
8 PF13920 zf-C3HC4_3: Zinc fing 98.9 8.5E-10 1.8E-14 81.1 2.3 46 228-273 3-49 (50)
9 KOG0823|consensus 98.9 9.3E-10 2E-14 104.2 2.2 47 226-272 46-95 (230)
10 TIGR00599 rad18 DNA repair pro 98.8 3.4E-09 7.4E-14 108.7 5.7 62 226-287 25-90 (397)
11 PF13639 zf-RING_2: Ring finge 98.8 9.8E-10 2.1E-14 78.6 1.2 40 229-268 2-44 (44)
12 PHA02929 N1R/p28-like protein; 98.8 3.1E-09 6.7E-14 102.3 3.3 49 228-276 175-231 (238)
13 KOG0287|consensus 98.8 4.2E-09 9E-14 104.3 3.2 46 227-272 23-68 (442)
14 KOG0320|consensus 98.8 3.3E-09 7.2E-14 96.9 2.3 46 226-271 130-177 (187)
15 PF00097 zf-C3HC4: Zinc finger 98.7 4.5E-09 9.9E-14 73.7 2.3 38 230-267 1-41 (41)
16 PF04564 U-box: U-box domain; 98.7 1.6E-08 3.6E-13 80.2 4.3 62 227-288 4-67 (73)
17 COG5432 RAD18 RING-finger-cont 98.6 1.2E-08 2.6E-13 99.4 1.8 47 226-272 24-70 (391)
18 PHA02926 zinc finger-like prot 98.6 2.3E-08 4.9E-13 94.6 3.2 48 228-275 171-233 (242)
19 cd00162 RING RING-finger (Real 98.6 3E-08 6.5E-13 69.0 2.8 42 229-270 1-44 (45)
20 PF14634 zf-RING_5: zinc-RING 98.5 5E-08 1.1E-12 70.0 2.5 41 229-269 1-44 (44)
21 smart00184 RING Ring finger. E 98.5 7E-08 1.5E-12 64.8 2.6 38 230-267 1-39 (39)
22 PF13445 zf-RING_UBOX: RING-ty 98.5 6.1E-08 1.3E-12 69.6 1.4 35 230-265 1-43 (43)
23 KOG2164|consensus 98.4 8E-08 1.7E-12 99.9 2.7 46 227-272 186-236 (513)
24 COG5574 PEX10 RING-finger-cont 98.4 7.7E-08 1.7E-12 92.9 2.0 46 227-272 215-262 (271)
25 PF14835 zf-RING_6: zf-RING of 98.4 1.3E-07 2.7E-12 73.2 1.9 52 228-281 8-61 (65)
26 PF12678 zf-rbx1: RING-H2 zinc 98.4 2.7E-07 5.8E-12 73.4 3.1 39 230-268 22-73 (73)
27 KOG1039|consensus 98.4 1.7E-07 3.7E-12 94.6 2.4 98 175-277 97-226 (344)
28 TIGR00570 cdk7 CDK-activating 98.3 4.4E-06 9.5E-11 83.1 11.4 44 229-272 5-54 (309)
29 KOG2177|consensus 98.3 2.1E-07 4.6E-12 87.5 1.9 44 226-269 12-55 (386)
30 KOG0978|consensus 98.3 1.8E-07 3.9E-12 101.2 1.3 47 226-272 642-689 (698)
31 PF00642 zf-CCCH: Zinc finger 98.2 5E-07 1.1E-11 58.5 1.4 27 168-194 1-27 (27)
32 KOG4628|consensus 98.0 2.6E-06 5.5E-11 86.0 2.4 46 226-271 228-277 (348)
33 smart00356 ZnF_C3H1 zinc finge 98.0 3.9E-06 8.5E-11 53.4 1.8 26 168-194 2-27 (27)
34 KOG4159|consensus 97.9 6.7E-06 1.5E-10 84.7 2.3 49 225-273 82-130 (398)
35 COG5243 HRD1 HRD ubiquitin lig 97.8 1.1E-05 2.4E-10 81.3 3.3 44 228-271 288-344 (491)
36 KOG0311|consensus 97.8 4.1E-06 8.8E-11 83.9 0.1 47 226-272 42-90 (381)
37 COG5540 RING-finger-containing 97.8 1.2E-05 2.5E-10 79.3 2.4 47 226-272 322-372 (374)
38 KOG0802|consensus 97.7 9.4E-06 2E-10 87.0 1.4 45 227-271 291-340 (543)
39 KOG0824|consensus 97.7 1.4E-05 3E-10 78.8 2.3 54 229-282 9-63 (324)
40 KOG2660|consensus 97.7 1.2E-05 2.6E-10 80.0 2.0 49 226-274 14-63 (331)
41 PF12861 zf-Apc11: Anaphase-pr 97.7 2.1E-05 4.6E-10 64.4 2.7 43 229-271 23-81 (85)
42 PHA03096 p28-like protein; Pro 97.6 8.5E-06 1.8E-10 80.6 -1.0 79 181-260 130-219 (284)
43 PF11789 zf-Nse: Zinc-finger o 97.6 3.1E-05 6.6E-10 58.9 1.4 41 226-266 10-53 (57)
44 KOG4172|consensus 97.5 1.6E-05 3.5E-10 59.6 -0.6 47 229-275 9-57 (62)
45 KOG4265|consensus 97.4 8.7E-05 1.9E-09 74.7 2.1 49 226-274 289-338 (349)
46 KOG2879|consensus 97.2 0.00023 4.9E-09 69.5 2.8 47 226-272 238-287 (298)
47 COG5222 Uncharacterized conser 97.2 0.00037 7.9E-09 68.8 4.1 44 226-269 273-318 (427)
48 KOG0297|consensus 97.1 0.00018 4E-09 74.3 1.9 46 226-271 20-66 (391)
49 KOG0825|consensus 97.0 0.00014 3.1E-09 79.1 -0.5 46 228-273 124-172 (1134)
50 KOG0828|consensus 97.0 0.00033 7.1E-09 73.1 1.9 46 228-273 572-635 (636)
51 KOG0804|consensus 97.0 0.0006 1.3E-08 70.5 3.7 100 157-271 113-221 (493)
52 KOG0827|consensus 96.8 0.0053 1.2E-07 62.7 9.0 44 228-271 5-55 (465)
53 KOG4739|consensus 96.7 0.0093 2E-07 57.5 9.0 41 229-271 5-47 (233)
54 KOG1002|consensus 96.6 0.00094 2E-08 70.3 1.7 50 223-272 532-586 (791)
55 COG5194 APC11 Component of SCF 96.5 0.0014 3E-08 53.0 1.9 28 244-271 53-80 (88)
56 KOG4692|consensus 96.5 0.0014 3E-08 66.1 2.3 46 228-273 423-468 (489)
57 KOG1645|consensus 96.5 0.0053 1.1E-07 63.1 6.4 45 227-271 4-55 (463)
58 smart00744 RINGv The RING-vari 96.4 0.0022 4.7E-08 47.3 2.1 40 229-268 1-49 (49)
59 KOG1734|consensus 96.4 0.00096 2.1E-08 65.1 0.3 44 228-271 225-280 (328)
60 KOG4367|consensus 96.2 0.002 4.3E-08 66.5 1.5 34 226-259 3-36 (699)
61 KOG1571|consensus 96.0 0.0021 4.6E-08 65.0 0.8 46 226-274 304-349 (355)
62 KOG1493|consensus 96.0 0.0019 4.2E-08 51.8 0.3 43 229-271 22-80 (84)
63 KOG1785|consensus 96.0 0.0029 6.2E-08 64.8 1.4 46 229-274 371-418 (563)
64 PF04641 Rtf2: Rtf2 RING-finge 95.9 0.0063 1.4E-07 59.5 3.6 46 226-272 112-161 (260)
65 COG5236 Uncharacterized conser 95.8 0.0055 1.2E-07 61.8 2.5 50 226-275 60-111 (493)
66 PF11793 FANCL_C: FANCL C-term 95.6 0.0029 6.3E-08 50.0 -0.1 45 228-272 3-66 (70)
67 PF14447 Prok-RING_4: Prokaryo 95.6 0.0049 1.1E-07 46.5 1.0 43 228-272 8-50 (55)
68 KOG4185|consensus 95.6 0.015 3.3E-07 57.3 4.6 44 228-271 4-54 (296)
69 COG5219 Uncharacterized conser 95.5 0.0049 1.1E-07 68.8 1.1 44 229-272 1471-1523(1525)
70 KOG3039|consensus 95.1 0.014 3E-07 56.6 2.6 47 226-272 220-270 (303)
71 KOG1677|consensus 95.0 0.0098 2.1E-07 59.6 1.5 34 161-194 168-201 (332)
72 KOG4275|consensus 94.9 0.0047 1E-07 61.0 -1.1 41 227-271 300-341 (350)
73 KOG1001|consensus 94.7 0.013 2.9E-07 64.5 1.3 43 228-271 455-499 (674)
74 KOG0826|consensus 94.4 0.022 4.7E-07 57.2 2.1 45 228-272 301-346 (357)
75 KOG2932|consensus 94.3 0.013 2.9E-07 58.4 0.2 42 228-271 91-133 (389)
76 KOG3800|consensus 94.2 0.33 7.1E-06 48.3 9.6 43 229-271 2-50 (300)
77 KOG1814|consensus 94.2 0.034 7.4E-07 57.3 2.9 46 226-271 183-239 (445)
78 PF03854 zf-P11: P-11 zinc fin 94.0 0.024 5.3E-07 41.5 1.1 43 229-273 4-47 (50)
79 KOG2930|consensus 93.5 0.039 8.5E-07 46.8 1.6 27 244-270 80-106 (114)
80 COG5220 TFB3 Cdk activating ki 93.0 0.57 1.2E-05 45.5 8.8 45 227-271 10-63 (314)
81 KOG3970|consensus 92.8 0.11 2.3E-06 50.0 3.5 57 229-285 52-118 (299)
82 KOG4445|consensus 92.6 0.033 7.1E-07 55.4 -0.2 44 229-272 117-186 (368)
83 PF14570 zf-RING_4: RING/Ubox 92.2 0.14 2.9E-06 37.8 2.7 42 230-271 1-47 (48)
84 KOG0298|consensus 91.9 0.047 1E-06 63.1 -0.0 47 225-271 1151-1198(1394)
85 KOG1941|consensus 91.7 0.051 1.1E-06 55.8 -0.0 44 226-269 364-413 (518)
86 KOG2114|consensus 91.5 0.073 1.6E-06 59.2 1.0 42 229-273 842-884 (933)
87 PF14608 zf-CCCH_2: Zinc finge 90.8 0.11 2.3E-06 31.0 0.8 18 172-192 1-18 (19)
88 KOG3002|consensus 90.4 0.18 3.9E-06 50.6 2.5 43 228-274 49-93 (299)
89 KOG4362|consensus 89.5 0.1 2.2E-06 57.3 -0.1 46 226-271 20-68 (684)
90 COG5175 MOT2 Transcriptional r 89.5 0.4 8.6E-06 48.7 4.0 43 229-271 16-63 (480)
91 KOG2817|consensus 89.3 0.33 7.1E-06 50.1 3.3 66 206-271 312-384 (394)
92 KOG3039|consensus 89.2 0.23 4.9E-06 48.4 2.0 30 229-258 45-74 (303)
93 PF10367 Vps39_2: Vacuolar sor 88.9 0.12 2.6E-06 42.8 -0.1 27 229-255 80-108 (109)
94 KOG3161|consensus 88.2 0.19 4.2E-06 54.5 0.9 36 228-265 12-51 (861)
95 KOG1940|consensus 88.0 0.39 8.4E-06 47.7 2.8 44 226-269 157-204 (276)
96 KOG1428|consensus 87.5 0.64 1.4E-05 54.8 4.4 44 229-272 3488-3544(3738)
97 PF02891 zf-MIZ: MIZ/SP-RING z 87.0 0.41 8.9E-06 35.4 1.8 44 227-270 2-50 (50)
98 PF07800 DUF1644: Protein of u 86.6 0.58 1.2E-05 42.8 2.8 32 228-259 3-47 (162)
99 KOG3113|consensus 86.4 1.1 2.5E-05 43.8 4.9 61 225-287 109-177 (293)
100 PF05290 Baculo_IE-1: Baculovi 86.1 0.52 1.1E-05 41.9 2.2 45 228-272 81-132 (140)
101 KOG1100|consensus 86.0 0.26 5.7E-06 46.9 0.4 39 230-272 161-200 (207)
102 PF03194 LUC7: LUC7 N_terminus 85.3 0.38 8.1E-06 47.2 1.1 41 151-193 12-61 (254)
103 KOG2034|consensus 84.8 0.37 8E-06 54.2 0.9 31 229-259 819-851 (911)
104 PF08746 zf-RING-like: RING-li 84.4 0.89 1.9E-05 32.5 2.4 38 230-267 1-43 (43)
105 KOG1039|consensus 84.2 0.41 8.8E-06 49.0 0.8 25 171-196 9-33 (344)
106 KOG2185|consensus 82.5 0.62 1.3E-05 48.3 1.3 23 172-195 142-164 (486)
107 KOG1677|consensus 80.7 0.62 1.4E-05 46.6 0.6 27 168-194 130-157 (332)
108 KOG3579|consensus 80.3 0.74 1.6E-05 45.7 1.0 36 225-260 266-305 (352)
109 KOG1812|consensus 78.8 1.2 2.6E-05 46.3 2.0 46 226-271 145-202 (384)
110 KOG3268|consensus 78.6 1.3 2.9E-05 41.3 2.0 46 227-272 165-228 (234)
111 PF07191 zinc-ribbons_6: zinc- 78.5 0.34 7.3E-06 38.5 -1.6 39 228-271 2-40 (70)
112 PHA02825 LAP/PHD finger-like p 77.9 2.6 5.6E-05 38.7 3.6 46 226-272 7-59 (162)
113 PF10186 Atg14: UV radiation r 77.4 35 0.00076 33.0 11.8 20 229-256 1-20 (302)
114 KOG2068|consensus 76.1 5.9 0.00013 40.2 5.9 50 226-275 248-301 (327)
115 KOG1815|consensus 73.1 2 4.4E-05 45.2 1.9 34 226-259 69-103 (444)
116 COG5109 Uncharacterized conser 71.5 2.2 4.8E-05 43.1 1.6 44 228-271 337-386 (396)
117 PF12906 RINGv: RING-variant d 71.0 2.2 4.8E-05 31.0 1.2 38 230-267 1-47 (47)
118 PHA02862 5L protein; Provision 70.0 3.5 7.7E-05 37.3 2.4 43 229-272 4-53 (156)
119 PF05883 Baculo_RING: Baculovi 69.7 1.7 3.7E-05 38.8 0.4 34 227-260 26-68 (134)
120 PF10235 Cript: Microtubule-as 69.2 3 6.5E-05 34.8 1.7 34 229-271 46-79 (90)
121 PF04216 FdhE: Protein involve 68.8 0.84 1.8E-05 45.3 -2.0 47 227-273 172-223 (290)
122 PRK04023 DNA polymerase II lar 67.6 4.3 9.3E-05 46.8 3.0 46 226-273 625-675 (1121)
123 KOG1952|consensus 66.6 2.8 6.1E-05 47.2 1.3 45 226-270 190-245 (950)
124 KOG2333|consensus 66.2 2 4.4E-05 45.7 0.2 32 169-200 75-108 (614)
125 TIGR01562 FdhE formate dehydro 65.7 1.9 4E-05 43.5 -0.2 43 228-270 185-233 (305)
126 KOG0825|consensus 65.4 3.5 7.7E-05 46.2 1.8 43 229-271 98-153 (1134)
127 PF10272 Tmpp129: Putative tra 65.2 3.8 8.2E-05 42.3 1.9 27 245-271 311-350 (358)
128 COG5063 CTH1 CCCH-type Zn-fing 64.4 3.6 7.8E-05 41.4 1.5 29 166-194 270-298 (351)
129 KOG1763|consensus 63.4 3 6.6E-05 41.7 0.8 24 170-194 92-115 (343)
130 PF10481 CENP-F_N: Cenp-F N-te 61.2 66 0.0014 32.2 9.4 59 341-400 58-128 (307)
131 PRK03564 formate dehydrogenase 59.0 3 6.5E-05 42.1 -0.1 44 227-270 187-235 (309)
132 KOG1492|consensus 57.2 3.7 8.1E-05 39.6 0.2 22 172-193 208-229 (377)
133 PF07975 C1_4: TFIIH C1-like d 57.0 7.2 0.00016 29.2 1.6 39 230-268 2-50 (51)
134 KOG0309|consensus 56.3 6.5 0.00014 44.0 1.9 43 227-269 1028-1073(1081)
135 KOG2494|consensus 56.1 4.6 9.9E-05 41.0 0.6 32 158-192 27-59 (331)
136 KOG2113|consensus 55.2 7 0.00015 39.6 1.7 45 226-272 342-387 (394)
137 KOG3899|consensus 55.0 6.2 0.00013 39.6 1.3 27 245-271 325-364 (381)
138 COG5627 MMS21 DNA repair prote 54.6 18 0.00038 35.4 4.3 46 226-271 188-238 (275)
139 KOG1812|consensus 54.4 4.9 0.00011 41.7 0.5 43 227-269 306-353 (384)
140 KOG2979|consensus 52.7 15 0.00031 36.3 3.4 45 226-270 175-222 (262)
141 PF05458 Siva: Cd27 binding pr 51.3 62 0.0013 30.1 7.2 54 99-165 33-87 (175)
142 PRK11595 DNA utilization prote 50.9 12 0.00027 35.6 2.7 39 227-270 5-43 (227)
143 PF14569 zf-UDP: Zinc-binding 47.9 17 0.00037 29.6 2.6 44 228-271 10-61 (80)
144 COG3813 Uncharacterized protei 47.2 18 0.0004 29.1 2.6 42 229-272 7-52 (84)
145 TIGR00622 ssl1 transcription f 44.9 14 0.00031 32.0 1.8 40 229-268 57-110 (112)
146 KOG1595|consensus 44.0 12 0.00026 40.3 1.5 35 161-196 227-261 (528)
147 KOG0824|consensus 44.0 6.8 0.00015 39.4 -0.3 44 229-272 107-151 (324)
148 COG0068 HypF Hydrogenase matur 44.0 12 0.00025 41.9 1.4 43 229-271 103-183 (750)
149 KOG2807|consensus 43.3 12 0.00027 38.0 1.4 40 229-268 332-374 (378)
150 PF13240 zinc_ribbon_2: zinc-r 42.8 5.1 0.00011 24.9 -0.9 11 260-270 12-22 (23)
151 cd00065 FYVE FYVE domain; Zinc 42.7 14 0.00031 27.0 1.3 31 229-259 4-38 (57)
152 KOG2135|consensus 42.6 9.4 0.0002 40.6 0.4 31 168-198 210-240 (526)
153 KOG4718|consensus 41.8 13 0.00028 35.7 1.2 43 228-270 182-225 (235)
154 PF08776 VASP_tetra: VASP tetr 40.8 93 0.002 22.2 5.0 34 366-399 4-37 (40)
155 KOG0289|consensus 40.8 1.4E+02 0.003 31.9 8.5 44 228-271 1-45 (506)
156 PF05605 zf-Di19: Drought indu 40.3 15 0.00032 27.1 1.1 37 227-270 2-40 (54)
157 KOG2202|consensus 40.1 11 0.00023 37.1 0.4 27 172-198 17-43 (260)
158 PF10497 zf-4CXXC_R1: Zinc-fin 40.0 20 0.00044 30.5 2.0 26 246-271 37-71 (105)
159 PRK14714 DNA polymerase II lar 39.2 19 0.00042 42.6 2.3 62 227-288 667-740 (1337)
160 KOG3842|consensus 37.8 33 0.00072 35.0 3.4 32 242-273 375-415 (429)
161 PF01363 FYVE: FYVE zinc finge 37.4 11 0.00025 28.8 0.1 31 228-258 10-44 (69)
162 KOG1040|consensus 36.0 20 0.00043 36.6 1.6 27 167-194 74-100 (325)
163 PF06844 DUF1244: Protein of u 35.3 20 0.00043 28.3 1.1 12 248-259 11-22 (68)
164 PF06906 DUF1272: Protein of u 34.1 31 0.00066 26.4 1.9 42 229-272 7-52 (57)
165 KOG3053|consensus 33.4 33 0.00071 34.0 2.5 52 226-277 19-87 (293)
166 PF10650 zf-C3H1: Putative zin 32.7 22 0.00047 22.4 0.8 21 172-194 2-23 (23)
167 smart00064 FYVE Protein presen 32.2 33 0.00071 26.1 1.9 32 228-259 11-46 (68)
168 PF10146 zf-C4H2: Zinc finger- 32.1 27 0.00059 33.8 1.8 25 248-272 195-219 (230)
169 PF14446 Prok-RING_1: Prokaryo 31.8 32 0.0007 26.1 1.7 39 228-270 6-50 (54)
170 COG5151 SSL1 RNA polymerase II 31.7 23 0.00051 35.9 1.2 41 229-269 364-418 (421)
171 KOG3799|consensus 31.5 24 0.00051 31.7 1.1 34 228-271 66-99 (169)
172 cd00350 rubredoxin_like Rubred 31.2 33 0.00071 22.9 1.5 10 261-270 17-26 (33)
173 PF04710 Pellino: Pellino; In 30.5 17 0.00036 38.0 0.0 44 226-272 276-339 (416)
174 PF09723 Zn-ribbon_8: Zinc rib 30.5 11 0.00025 26.6 -0.9 26 243-269 9-34 (42)
175 PF14353 CpXC: CpXC protein 30.1 42 0.00091 28.9 2.4 44 228-271 2-48 (128)
176 KOG3476|consensus 29.7 12 0.00026 31.1 -1.0 34 229-271 56-89 (100)
177 PF04710 Pellino: Pellino; In 29.7 18 0.00038 37.8 0.0 48 227-274 328-403 (416)
178 KOG0269|consensus 28.9 41 0.00088 38.0 2.6 44 229-272 781-828 (839)
179 PF10571 UPF0547: Uncharacteri 28.9 15 0.00032 23.6 -0.5 8 230-237 3-10 (26)
180 KOG1814|consensus 28.7 24 0.00053 37.0 0.8 34 226-259 367-406 (445)
181 COG5183 SSM4 Protein involved 28.4 48 0.001 37.8 3.0 44 228-271 13-65 (1175)
182 PF13248 zf-ribbon_3: zinc-rib 28.3 13 0.00029 23.5 -0.8 10 261-270 16-25 (26)
183 KOG4451|consensus 27.9 33 0.00072 33.4 1.5 25 248-272 250-274 (286)
184 KOG2231|consensus 27.6 39 0.00085 37.7 2.2 43 229-271 2-51 (669)
185 KOG4185|consensus 26.7 14 0.00031 36.3 -1.2 43 228-270 208-265 (296)
186 KOG0796|consensus 26.6 33 0.00072 34.8 1.3 41 151-193 13-62 (319)
187 KOG1356|consensus 25.9 22 0.00047 40.4 -0.2 33 226-258 228-262 (889)
188 smart00647 IBR In Between Ring 25.6 16 0.00034 27.0 -0.9 16 244-259 45-60 (64)
189 KOG2462|consensus 25.4 24 0.00053 35.1 0.1 10 262-271 216-225 (279)
190 COG4306 Uncharacterized protei 24.8 37 0.00081 30.2 1.2 23 248-273 29-51 (160)
191 PRK06266 transcription initiat 24.1 39 0.00084 31.4 1.2 34 226-274 116-149 (178)
192 KOG0827|consensus 23.9 10 0.00022 39.5 -2.9 47 226-272 195-245 (465)
193 PLN02189 cellulose synthase 23.6 50 0.0011 38.6 2.2 44 229-272 36-87 (1040)
194 KOG1866|consensus 23.5 27 0.00058 39.4 0.0 65 125-201 422-486 (944)
195 smart00154 ZnF_AN1 AN1-like Zi 23.1 44 0.00096 23.3 1.0 22 230-251 1-24 (39)
196 PF04423 Rad50_zn_hook: Rad50 22.8 38 0.00081 25.0 0.7 22 263-286 22-43 (54)
197 PLN02436 cellulose synthase A 22.2 51 0.0011 38.7 1.8 44 229-272 38-89 (1094)
198 TIGR00143 hypF [NiFe] hydrogen 22.2 46 0.00099 37.5 1.5 23 249-271 120-150 (711)
199 KOG2202|consensus 22.1 38 0.00083 33.4 0.8 30 164-194 146-175 (260)
200 PF02318 FYVE_2: FYVE-type zin 21.6 36 0.00078 29.2 0.4 42 228-269 55-102 (118)
201 PRK03918 chromosome segregatio 21.5 1E+03 0.022 26.9 12.2 12 262-273 436-447 (880)
202 PF10083 DUF2321: Uncharacteri 21.3 51 0.0011 30.2 1.3 25 246-273 27-51 (158)
203 KOG1040|consensus 21.1 45 0.00097 34.1 1.0 24 172-195 107-130 (325)
204 KOG1829|consensus 21.1 37 0.0008 37.3 0.5 39 226-267 510-556 (580)
205 PF03833 PolC_DP2: DNA polymer 21.1 32 0.00069 39.3 0.0 46 226-273 654-704 (900)
206 KOG2333|consensus 20.7 36 0.00079 36.7 0.3 22 172-193 116-137 (614)
207 PLN02638 cellulose synthase A 20.4 60 0.0013 38.2 2.0 44 229-272 19-70 (1079)
208 COG3492 Uncharacterized protei 20.4 45 0.00098 28.0 0.7 13 248-260 42-54 (104)
209 COG4647 AcxC Acetone carboxyla 20.3 40 0.00086 30.1 0.4 22 231-252 61-82 (165)
210 COG3058 FdhE Uncharacterized p 20.1 52 0.0011 33.0 1.2 44 228-271 186-235 (308)
No 1
>KOG1813|consensus
Probab=100.00 E-value=4.1e-67 Score=502.65 Aligned_cols=262 Identities=44% Similarity=0.742 Sum_probs=235.3
Q ss_pred cccc-ccccccCCCCCccccccccccCC--CCC-CCCccccccCccceEEeecCCcCCCCCCCCCCccccccccccchhH
Q psy16818 26 TQIV-RKEKKIREDPNFQKTTKQTKAAK--PQV-EDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDA 101 (403)
Q Consensus 26 ~~v~-~~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~d~ 101 (403)
++++ .++..+..|||+|+|+.+.+... ..+ ..+.+....+.+.|+|.|.+++.+.||.|+|||+++|.+|+..+||
T Consensus 39 ~~s~r~ek~~k~~~p~~q~~k~~~k~~~~~~~~s~~s~~~~~~ed~vv~y~s~~~~~~~g~~dsgat~t~e~~te~~~Da 118 (313)
T KOG1813|consen 39 NESSRLEKLEKKIKPETQRKKETDKVLTGEEDDSALSICQNPFEDPVVTYCSCDKCALKGHTDSGATATLEEPTEGLRDA 118 (313)
T ss_pred cchhhhhhhhhhcchHhhhhhhhcccccccccccccccccCcccccceeeccccccccCCccccCceeEeecCcccchhH
Confidence 4455 77778889999999998876431 111 1222222346689999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhhhcCCCCchhhhhhhhhhhhhhcccccccCCCCCccccccccCCcceeeeeeccCCCccchhhhhhc
Q psy16818 102 QAIYEKSLK-INAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETG 180 (403)
Q Consensus 102 ~~~~~~~~~-~~~~~~~~~~~~~y~g~~~y~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~r~~~~~dyqpdiCkdYk~tG 180 (403)
|+|++++++ +++++.|+.++.+|+|+++|.+|.++.+++.+|+++|+++ |||||+|+|++++|||||||||||++||
T Consensus 119 qa~~er~~k~~~e~~~~k~~~~lykg~~~ya~~~k~~~~~~~n~s~g~~r--pira~~~~r~~~~~d~qpDicKdykeTg 196 (313)
T KOG1813|consen 119 QAIIERRIKEEREKLRGKKDTKLYKGINTYADDAKAQKVVKMNESIGTVR--PIRAAMHTRAGERIDYQPDICKDYKETG 196 (313)
T ss_pred HHHhhhhHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhHhhhccccccc--ccchhhhhcccceeecCchhhhhhHhhC
Confidence 999999999 8899999889999999999999999999999999999987 9999999999999999999999999999
Q ss_pred CCCCCCccccccCCCccccCcccccccccccccCcCCCCCCcCCCCccccccccccccCCcccccCCcccHHhHHHHhcc
Q psy16818 181 FCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK 260 (403)
Q Consensus 181 ~CgfGDsCkflHdr~dy~~gwqle~e~e~~~~~~~ei~~~deed~~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~ 260 (403)
||||||||+|||+|+||++||+|+.+|+...+..+.+.. |++. +||.|.||...|.+||++.|+|+||..|....+++
T Consensus 197 ycg~gdSckFlh~r~DyK~GWqi~~e~d~~ke~~~~~~~-D~~~-~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk 274 (313)
T KOG1813|consen 197 YCGYGDSCKFLHDRSDYKAGWQIEFEWDSAKEKKRVKIE-DIEL-LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK 274 (313)
T ss_pred cccccchhhhhhhhhhccccceeehhhhccccccceecC-Cccc-CCccccccccccccchhhcCCceeehhhhcccccc
Confidence 999999999999999999999999999988888887765 5566 99999999999999999999999999999999999
Q ss_pred CCCccccCccccccccchHHHHHHHHHHhhH
Q psy16818 261 TPKCYICQKNTFGEFRTAEKIVQKLKDAGDI 291 (403)
Q Consensus 261 ~~~CP~Cr~~~~~~~~~~~~Li~~l~~~~~~ 291 (403)
...|++|.+++.++|+++.+|+..|+..+..
T Consensus 275 ~~~c~vC~~~t~g~~~~akeL~~~L~~kks~ 305 (313)
T KOG1813|consen 275 GEKCYVCSQQTHGSFNVAKELLVSLKLKKSD 305 (313)
T ss_pred CCcceecccccccccchHHHHHHHHHhhhhh
Confidence 9999999999999999999999998876443
No 2
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=100.00 E-value=7.1e-42 Score=312.40 Aligned_cols=134 Identities=43% Similarity=0.937 Sum_probs=119.6
Q ss_pred cccCCcceeeeeeccCCCccchhhhhhcCCCCCCccccccCCCccccCcccccccccccccCcCCCCCCcCCCCcccccc
Q psy16818 153 PIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYI 232 (403)
Q Consensus 153 p~~~~~~~r~~~~~dyqpdiCkdYk~tG~CgfGDsCkflHdr~dy~~gwqle~e~e~~~~~~~ei~~~deed~~~l~C~I 232 (403)
.|-.|++||+++.+||||||||||++||||||||+|+|||+|+||+.||+|+++|.+.-++...+.. +-|+ +||.|.|
T Consensus 124 ~~~~Pt~~r~~~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn~EWnA~~Ee~~v~~~-~~e~-IPF~C~i 201 (259)
T COG5152 124 QINQPTMFRDGEVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWNAEYEEAPVISG-PGEK-IPFLCGI 201 (259)
T ss_pred hccCCceeeccceeecCcccccchhhcccccCCchhhhhhhhhhhhcccccchhhcchhhhcccccC-CCCC-Cceeehh
Confidence 4556699999999999999999999999999999999999999999999999999965555444433 4456 9999999
Q ss_pred ccccccCCcccccCCcccHHhHHHHhccCCCccccCccccccccchHHHHHHHHHH
Q psy16818 233 CRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDA 288 (403)
Q Consensus 233 C~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~Li~~l~~~ 288 (403)
|...|..||++.|||+||..|+...+++...|.+|++.+.+.|..+.++...|.+.
T Consensus 202 CKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~R 257 (259)
T COG5152 202 CKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNKR 257 (259)
T ss_pred chhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999888877766543
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.09 E-value=4.4e-11 Score=85.34 Aligned_cols=38 Identities=42% Similarity=0.919 Sum_probs=30.8
Q ss_pred cccccccccCCcccccCCcccHHhHHHHhccC----CCcccc
Q psy16818 230 CYICRNSFKDPVMTKCKHYFCTKCALEHFKKT----PKCYIC 267 (403)
Q Consensus 230 C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~----~~CP~C 267 (403)
|+||+++|.+|++++|||+||..||..|+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999843 469987
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.02 E-value=3.5e-10 Score=86.10 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=47.7
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHH
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQK 284 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~ 284 (403)
+.|+||.+.+.+|++++|||+||..||..|+.....||+|+.++. ..+.++..|...
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~ 59 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSA 59 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHH
Confidence 689999999999999999999999999999988888999999884 344444444443
No 5
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.96 E-value=2.7e-10 Score=79.57 Aligned_cols=38 Identities=45% Similarity=1.138 Sum_probs=34.0
Q ss_pred cccccccccCC-cccccCCcccHHhHHHHhccCCCcccc
Q psy16818 230 CYICRNSFKDP-VMTKCKHYFCTKCALEHFKKTPKCYIC 267 (403)
Q Consensus 230 C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~~~~~CP~C 267 (403)
|+||++.+.+| ++++|||+||..|+.+|+.....||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 688999999999999999988899998
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.94 E-value=6e-10 Score=103.61 Aligned_cols=47 Identities=36% Similarity=0.843 Sum_probs=41.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhcc----------------CCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK----------------TPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~----------------~~~CP~Cr~~~~ 272 (403)
..+.|+||++.+.+|++++|||.||+.||..|+.. ...||+|+..+.
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 45889999999999999999999999999999741 357999999884
No 7
>KOG0317|consensus
Probab=98.90 E-value=5.8e-10 Score=108.48 Aligned_cols=47 Identities=30% Similarity=0.717 Sum_probs=43.7
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
....|.+|++...+|..|||||.||++||..|......||+||..+.
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 44789999999999999999999999999999999889999999874
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.88 E-value=8.5e-10 Score=81.07 Aligned_cols=46 Identities=35% Similarity=0.753 Sum_probs=40.9
Q ss_pred cccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
..|.||++.+.++++++|||. ||..|+.+|+.....||+||+++..
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 469999999999999999999 9999999999988999999998754
No 9
>KOG0823|consensus
Probab=98.85 E-value=9.3e-10 Score=104.23 Aligned_cols=47 Identities=34% Similarity=0.789 Sum_probs=42.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhcc---CCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK---TPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~~ 272 (403)
-.|.|.||++..++||+|.|||.||+.||.+|+.. ...||+|+..+.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 66899999999999999999999999999999973 456999999873
No 10
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=3.4e-09 Score=108.65 Aligned_cols=62 Identities=32% Similarity=0.833 Sum_probs=50.0
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccc-cccch---HHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG-EFRTA---EKIVQKLKD 287 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~-~~~~~---~~Li~~l~~ 287 (403)
..+.|+||++.|.+|++++|||.||..||..|+.....||+|+..+.. .+..+ .+|++.+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 447899999999999999999999999999999887789999998853 23333 445555543
No 11
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.83 E-value=9.8e-10 Score=78.56 Aligned_cols=40 Identities=33% Similarity=0.795 Sum_probs=35.0
Q ss_pred cccccccccc---CCcccccCCcccHHhHHHHhccCCCccccC
Q psy16818 229 KCYICRNSFK---DPVMTKCKHYFCTKCALEHFKKTPKCYICQ 268 (403)
Q Consensus 229 ~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr 268 (403)
.|+||++.|. .++.++|||.||..||..|+.....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 4999999995 346789999999999999999989999996
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.78 E-value=3.1e-09 Score=102.29 Aligned_cols=49 Identities=24% Similarity=0.659 Sum_probs=41.8
Q ss_pred cccccccccccCC--------cccccCCcccHHhHHHHhccCCCccccCcccccccc
Q psy16818 228 FKCYICRNSFKDP--------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276 (403)
Q Consensus 228 l~C~IC~~~~~~P--------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 276 (403)
..|+||++.+.++ ++++|+|.||..||.+|+.....||+||..+..+++
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 4699999987653 467899999999999999988999999999876543
No 13
>KOG0287|consensus
Probab=98.75 E-value=4.2e-09 Score=104.33 Aligned_cols=46 Identities=30% Similarity=0.758 Sum_probs=43.7
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
-+.|.||.++|..|++++|+|+||.-||+.++...+.||.|..++.
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 4789999999999999999999999999999999999999999884
No 14
>KOG0320|consensus
Probab=98.75 E-value=3.3e-09 Score=96.90 Aligned_cols=46 Identities=43% Similarity=0.946 Sum_probs=41.0
Q ss_pred CccccccccccccC--CcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 226 LPFKCYICRNSFKD--PVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~--Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
.-+.|+||+..+.. |+.++|||.||..||...++....||+|++.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkI 177 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKI 177 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCccccc
Confidence 34899999999964 66799999999999999999999999999865
No 15
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.74 E-value=4.5e-09 Score=73.68 Aligned_cols=38 Identities=39% Similarity=1.028 Sum_probs=35.2
Q ss_pred cccccccccCCc-ccccCCcccHHhHHHHhc--cCCCcccc
Q psy16818 230 CYICRNSFKDPV-MTKCKHYFCTKCALEHFK--KTPKCYIC 267 (403)
Q Consensus 230 C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~--~~~~CP~C 267 (403)
|+||++.+..|+ +++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 56679988
No 16
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.69 E-value=1.6e-08 Score=80.18 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=47.5
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCccccc-cccchHHHHHHHHHH
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFG-EFRTAEKIVQKLKDA 288 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~-~~~~~~~Li~~l~~~ 288 (403)
.|.|+||.+++.+||+++|||+|+..||..|+.. ...||.|+.++.. .+.++..|...+...
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~ 67 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW 67 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence 4899999999999999999999999999999997 7889999998854 566676666655544
No 17
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-08 Score=99.37 Aligned_cols=47 Identities=30% Similarity=0.769 Sum_probs=44.1
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.-+.|.||...|..|+.|+|||.||.-||+.++...+.||+||.+..
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 44789999999999999999999999999999999999999999883
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.60 E-value=2.3e-08 Score=94.58 Aligned_cols=48 Identities=23% Similarity=0.560 Sum_probs=38.4
Q ss_pred cccccccccccC---------CcccccCCcccHHhHHHHhcc------CCCccccCccccccc
Q psy16818 228 FKCYICRNSFKD---------PVMTKCKHYFCTKCALEHFKK------TPKCYICQKNTFGEF 275 (403)
Q Consensus 228 l~C~IC~~~~~~---------Pv~t~CgH~FC~~Ci~~~~~~------~~~CP~Cr~~~~~~~ 275 (403)
..|+||++.... +++.+|+|.||..||..|... ...||+||..+..+.
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 359999998643 367799999999999999874 245999999986543
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.59 E-value=3e-08 Score=68.98 Aligned_cols=42 Identities=33% Similarity=0.907 Sum_probs=36.6
Q ss_pred ccccccccccCCcccc-cCCcccHHhHHHHhcc-CCCccccCcc
Q psy16818 229 KCYICRNSFKDPVMTK-CKHYFCTKCALEHFKK-TPKCYICQKN 270 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~-~~~CP~Cr~~ 270 (403)
.|+||++.+..++.+. |||.||..|+..|+.. ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999997777654 9999999999999986 6789999875
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.52 E-value=5e-08 Score=69.98 Aligned_cols=41 Identities=41% Similarity=0.955 Sum_probs=35.2
Q ss_pred ccccccccc---cCCcccccCCcccHHhHHHHhccCCCccccCc
Q psy16818 229 KCYICRNSF---KDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269 (403)
Q Consensus 229 ~C~IC~~~~---~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~ 269 (403)
.|+||.+.+ ..|++++|||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 389999999 34689999999999999998855678999985
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.50 E-value=7e-08 Score=64.77 Aligned_cols=38 Identities=42% Similarity=0.989 Sum_probs=34.6
Q ss_pred cccccccccCCcccccCCcccHHhHHHHhc-cCCCcccc
Q psy16818 230 CYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYIC 267 (403)
Q Consensus 230 C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~C 267 (403)
|+||++....+++++|||.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 889999988999999999999999999998 55679987
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.46 E-value=6.1e-08 Score=69.64 Aligned_cols=35 Identities=40% Similarity=0.940 Sum_probs=22.4
Q ss_pred cccccccccC----CcccccCCcccHHhHHHHhccC----CCcc
Q psy16818 230 CYICRNSFKD----PVMTKCKHYFCTKCALEHFKKT----PKCY 265 (403)
Q Consensus 230 C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~~----~~CP 265 (403)
|+||.+ |.+ |++|+|||+||..|+.+++... .+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 887 8999999999999999998743 3566
No 23
>KOG2164|consensus
Probab=98.45 E-value=8e-08 Score=99.91 Aligned_cols=46 Identities=33% Similarity=0.740 Sum_probs=40.7
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhccC-----CCccccCcccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-----PKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-----~~CP~Cr~~~~ 272 (403)
+..||||++...-|+.|.|||.||..||+++|... ..||+|+..+.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 35799999999999999999999999999999743 46999999884
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.7e-08 Score=92.87 Aligned_cols=46 Identities=33% Similarity=0.841 Sum_probs=40.5
Q ss_pred ccccccccccccCCcccccCCcccHHhHHH-HhccCCC-ccccCcccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALE-HFKKTPK-CYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~-~~~~~~~-CP~Cr~~~~ 272 (403)
.+.|+||++....|+.++|||.||+.||.. |-.+... ||+||+...
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 378999999999999999999999999999 7665555 999998653
No 25
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.39 E-value=1.3e-07 Score=73.23 Aligned_cols=52 Identities=25% Similarity=0.803 Sum_probs=26.2
Q ss_pred cccccccccccCCcc-cccCCcccHHhHHHHhccCCCccccCccc-cccccchHHH
Q psy16818 228 FKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNT-FGEFRTAEKI 281 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~-t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~-~~~~~~~~~L 281 (403)
+.|++|...+..||. ..|.|.||+.|+...+. ..||+|..+. ...+..+..|
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqL 61 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQL 61 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHH
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhh
Confidence 689999999999985 68999999999977544 4599999987 3444444443
No 26
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.36 E-value=2.7e-07 Score=73.41 Aligned_cols=39 Identities=33% Similarity=0.910 Sum_probs=33.2
Q ss_pred cccccccccCC------------c-ccccCCcccHHhHHHHhccCCCccccC
Q psy16818 230 CYICRNSFKDP------------V-MTKCKHYFCTKCALEHFKKTPKCYICQ 268 (403)
Q Consensus 230 C~IC~~~~~~P------------v-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr 268 (403)
|.||++.|.+| + ..+|||.|+..||.+|+.....||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 99999999433 2 348999999999999999888999997
No 27
>KOG1039|consensus
Probab=98.36 E-value=1.7e-07 Score=94.64 Aligned_cols=98 Identities=17% Similarity=0.433 Sum_probs=69.4
Q ss_pred hhhhhcCCCCCCccccccCCCccccCccccccccccc-----------------ccCcCCCCCCcCCCCccccccccccc
Q psy16818 175 DYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGD-----------------NKNYEIPDSDEEDHLPFKCYICRNSF 237 (403)
Q Consensus 175 dYk~tG~CgfGDsCkflHdr~dy~~gwqle~e~e~~~-----------------~~~~ei~~~deed~~~l~C~IC~~~~ 237 (403)
+|-.-|-|.||..|.++|......+|.+..++..... +..+.... .....|.||++..
T Consensus 97 ~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~-----s~~k~CGICme~i 171 (344)
T KOG1039|consen 97 PYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQK-----SSEKECGICMETI 171 (344)
T ss_pred ccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCc-----cccccceehhhhc
Confidence 5556889999999999998766667766555554111 00111111 1235799999988
Q ss_pred cCCc--------ccccCCcccHHhHHHHhc--c-----CCCccccCccccccccc
Q psy16818 238 KDPV--------MTKCKHYFCTKCALEHFK--K-----TPKCYICQKNTFGEFRT 277 (403)
Q Consensus 238 ~~Pv--------~t~CgH~FC~~Ci~~~~~--~-----~~~CP~Cr~~~~~~~~~ 277 (403)
..+. +.+|.|.||..||..|.. . ++.||.||.....+.+.
T Consensus 172 ~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 172 NEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 7654 368999999999999984 3 57899999999766554
No 28
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=4.4e-06 Score=83.15 Aligned_cols=44 Identities=25% Similarity=0.668 Sum_probs=35.1
Q ss_pred cccccccc-ccCCc---cc-ccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 229 KCYICRNS-FKDPV---MT-KCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~-~~~Pv---~t-~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
.||||... +.+|. ++ +|||.||.+|+...|. ....||.|+.++.
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 69999984 55663 22 7999999999999775 4457999999883
No 29
>KOG2177|consensus
Probab=98.32 E-value=2.1e-07 Score=87.48 Aligned_cols=44 Identities=30% Similarity=0.843 Sum_probs=39.9
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~ 269 (403)
..+.|+||++.|..|.+++|||+||..|+..++.....||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 45789999999999999999999999999999885567999995
No 30
>KOG0978|consensus
Probab=98.31 E-value=1.8e-07 Score=101.24 Aligned_cols=47 Identities=34% Similarity=0.818 Sum_probs=42.7
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
.-+.|++|..-|.+.|++.|||.||..|+...+. ..++||.|+..|+
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3479999999999999999999999999999987 5688999999985
No 31
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.22 E-value=5e-07 Score=58.50 Aligned_cols=27 Identities=41% Similarity=1.088 Sum_probs=21.5
Q ss_pred CCCccchhhhhhcCCCCCCccccccCC
Q psy16818 168 YQPDICKDYKETGFCGFGDSCKFLHDR 194 (403)
Q Consensus 168 yqpdiCkdYk~tG~CgfGDsCkflHdr 194 (403)
|...+|+.|.++|.|.||++|.|+|++
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 456799999999999999999999974
No 32
>KOG4628|consensus
Probab=98.01 E-value=2.6e-06 Score=86.02 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=39.8
Q ss_pred CccccccccccccCC---cccccCCcccHHhHHHHhccCCC-ccccCccc
Q psy16818 226 LPFKCYICRNSFKDP---VMTKCKHYFCTKCALEHFKKTPK-CYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P---v~t~CgH~FC~~Ci~~~~~~~~~-CP~Cr~~~ 271 (403)
.+..|.||++.|..- .+|||+|.|+..||..|+...++ ||+|+..+
T Consensus 228 ~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 228 ATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred CCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 347999999999754 47899999999999999987755 99999977
No 33
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.96 E-value=3.9e-06 Score=53.44 Aligned_cols=26 Identities=42% Similarity=1.186 Sum_probs=23.5
Q ss_pred CCCccchhhhhhcCCCCCCccccccCC
Q psy16818 168 YQPDICKDYKETGFCGFGDSCKFLHDR 194 (403)
Q Consensus 168 yqpdiCkdYk~tG~CgfGDsCkflHdr 194 (403)
|++.+|++| ++|.|.+|++|.|+|+.
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 567799999 99999999999999973
No 34
>KOG4159|consensus
Probab=97.85 E-value=6.7e-06 Score=84.72 Aligned_cols=49 Identities=27% Similarity=0.781 Sum_probs=44.9
Q ss_pred CCccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 225 HLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 225 ~~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
..+|.|.||...+..||+++|||.||..||.+.+.....||.|+..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4679999999999999999999999999999988888899999999853
No 35
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.1e-05 Score=81.29 Aligned_cols=44 Identities=23% Similarity=0.633 Sum_probs=38.9
Q ss_pred cccccccccc-cC------------CcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSF-KD------------PVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~-~~------------Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
..|.||++.+ .. |..++|||.|+..|+..|+.....||+||.++
T Consensus 288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 5799999874 32 36889999999999999999999999999996
No 36
>KOG0311|consensus
Probab=97.82 E-value=4.1e-06 Score=83.94 Aligned_cols=47 Identities=28% Similarity=0.712 Sum_probs=41.3
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
..+.|+||+.+++...++ .|+|.||..||...++ ....||.||+.+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 668999999999988766 6999999999988877 4678999999984
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.2e-05 Score=79.32 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=39.4
Q ss_pred CccccccccccccC---CcccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKD---PVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~---Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
....|.||++.|.. -++|||.|.|+..|+.+|+. -...||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 34579999999853 25889999999999999998 5678999998764
No 38
>KOG0802|consensus
Probab=97.75 E-value=9.4e-06 Score=86.97 Aligned_cols=45 Identities=24% Similarity=0.601 Sum_probs=41.3
Q ss_pred ccccccccccccC-----CcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 227 PFKCYICRNSFKD-----PVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 227 ~l~C~IC~~~~~~-----Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
...|+||.+.+.. |..++|+|.||..|+..|++....||.||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 3579999999988 78999999999999999999999999999954
No 39
>KOG0824|consensus
Probab=97.74 E-value=1.4e-05 Score=78.77 Aligned_cols=54 Identities=26% Similarity=0.543 Sum_probs=44.3
Q ss_pred ccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCccccccccchHHHH
Q psy16818 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTFGEFRTAEKIV 282 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~Li 282 (403)
.|+||+....-|+.+.|+|.||.-||...+... ..|++||.++...|-....+.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~ 63 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLK 63 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhh
Confidence 499999999999999999999999999887754 459999999976554433333
No 40
>KOG2660|consensus
Probab=97.74 E-value=1.2e-05 Score=79.99 Aligned_cols=49 Identities=22% Similarity=0.621 Sum_probs=43.5
Q ss_pred CccccccccccccCCc-ccccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818 226 LPFKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
.-+.|.+|..+|.++. ++.|-|+||.+||..++.....||.|...+.+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4468999999999997 458999999999999999999999999988654
No 41
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.72 E-value=2.1e-05 Score=64.35 Aligned_cols=43 Identities=35% Similarity=0.831 Sum_probs=33.4
Q ss_pred cccccccccc-----------C-Cccc-ccCCcccHHhHHHHhcc---CCCccccCccc
Q psy16818 229 KCYICRNSFK-----------D-PVMT-KCKHYFCTKCALEHFKK---TPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~-----------~-Pv~t-~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~ 271 (403)
.|+||+..|. + |+++ .|+|.|+..||.+|+.. ...||+||++.
T Consensus 23 ~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 23 VCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred ceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 3777777764 1 4433 89999999999999984 35799999875
No 42
>PHA03096 p28-like protein; Provisional
Probab=97.63 E-value=8.5e-06 Score=80.62 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=50.5
Q ss_pred CCCCCCccccccCCCccccCcccccccccccccCcC---CCCCCcCCCCccccccccccccC--------CcccccCCcc
Q psy16818 181 FCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYE---IPDSDEEDHLPFKCYICRNSFKD--------PVMTKCKHYF 249 (403)
Q Consensus 181 ~CgfGDsCkflHdr~dy~~gwqle~e~e~~~~~~~e---i~~~deed~~~l~C~IC~~~~~~--------Pv~t~CgH~F 249 (403)
.|.+|++|.|||+...-+.|-+.....+.++..+.. +....... .--.|.||++.... .+...|.|.|
T Consensus 130 ~c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~~~~-~~k~c~ic~e~~~~k~~~~~~fgil~~c~h~f 208 (284)
T PHA03096 130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLL-LSKICGICLENIKAKYIIKKYYGILSEIKHEF 208 (284)
T ss_pred hcccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHHHHH-HHhhcccchhhhhhhccccccccccccCCcHH
Confidence 599999999999987777776655555522211100 00000000 01469999997642 1455899999
Q ss_pred cHHhHHHHhcc
Q psy16818 250 CTKCALEHFKK 260 (403)
Q Consensus 250 C~~Ci~~~~~~ 260 (403)
|..|+..|...
T Consensus 209 c~~ci~~wr~~ 219 (284)
T PHA03096 209 NIFCIKIWMTE 219 (284)
T ss_pred HHHHHHHHHHh
Confidence 99999999863
No 43
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.56 E-value=3.1e-05 Score=58.94 Aligned_cols=41 Identities=32% Similarity=0.698 Sum_probs=29.6
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhc--cCCCccc
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFK--KTPKCYI 266 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~--~~~~CP~ 266 (403)
..+.|||.+..|.+||.. .|||+|....|.+++. ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 778999999999999875 8999999999999994 3456998
No 44
>KOG4172|consensus
Probab=97.52 E-value=1.6e-05 Score=59.65 Aligned_cols=47 Identities=30% Similarity=0.590 Sum_probs=40.1
Q ss_pred ccccccccccCCcccccCCc-ccHHhHHHHhc-cCCCccccCccccccc
Q psy16818 229 KCYICRNSFKDPVMTKCKHY-FCTKCALEHFK-KTPKCYICQKNTFGEF 275 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 275 (403)
.|.||.+...+.|+..|||. .|..|.++.++ ....||+||+++..++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVI 57 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence 49999999999899999998 69999888877 5667999999876544
No 45
>KOG4265|consensus
Probab=97.36 E-value=8.7e-05 Score=74.73 Aligned_cols=49 Identities=29% Similarity=0.596 Sum_probs=43.0
Q ss_pred CccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCcccccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
....|.||+...++-+++||.|. .|..|+....-....||+||.++...
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 46689999999999999999999 69999988776778999999987543
No 46
>KOG2879|consensus
Probab=97.18 E-value=0.00023 Score=69.53 Aligned_cols=47 Identities=23% Similarity=0.527 Sum_probs=39.2
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhc--cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFK--KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~--~~~~CP~Cr~~~~ 272 (403)
....|++|.+....|.+. +|||.||..||..... -+..||.|+.+..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 346799999999999766 6999999999988765 3478999998764
No 47
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.17 E-value=0.00037 Score=68.81 Aligned_cols=44 Identities=30% Similarity=0.766 Sum_probs=39.1
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhc-cCCCccccCc
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFK-KTPKCYICQK 269 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~-~~~~CP~Cr~ 269 (403)
++|.|+.|..++.+|+.+ -|+|.||..||...+- ..+.||.|..
T Consensus 273 i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 273 ISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 889999999999999988 5899999999987765 4578999976
No 48
>KOG0297|consensus
Probab=97.15 E-value=0.00018 Score=74.28 Aligned_cols=46 Identities=37% Similarity=0.882 Sum_probs=42.0
Q ss_pred CccccccccccccCCcc-cccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~-t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
..+.|++|..++.+|+. +.|||.||..|+..|......||.|+...
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcccccccchhhccCcCCccccccc
Confidence 34789999999999998 49999999999999999888999998777
No 49
>KOG0825|consensus
Probab=97.00 E-value=0.00014 Score=79.08 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=39.8
Q ss_pred cccccccccccCCc---ccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 228 FKCYICRNSFKDPV---MTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 228 l~C~IC~~~~~~Pv---~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
-.|++|+..|.+-. -.+|+|+||..|+..|.+....||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 47999999987653 34899999999999999988999999999853
No 50
>KOG0828|consensus
Probab=96.98 E-value=0.00033 Score=73.08 Aligned_cols=46 Identities=24% Similarity=0.585 Sum_probs=36.9
Q ss_pred ccccccccccc-----------------CCcccccCCcccHHhHHHHhccCC-CccccCccccc
Q psy16818 228 FKCYICRNSFK-----------------DPVMTKCKHYFCTKCALEHFKKTP-KCYICQKNTFG 273 (403)
Q Consensus 228 l~C~IC~~~~~-----------------~Pv~t~CgH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~ 273 (403)
.-|+||+..+. +-.++||.|.|+..|+.+|+..-+ .||+||.++..
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34999998762 124679999999999999998544 89999998753
No 51
>KOG0804|consensus
Probab=96.98 E-value=0.0006 Score=70.53 Aligned_cols=100 Identities=22% Similarity=0.469 Sum_probs=61.4
Q ss_pred CcceeeeeeccCCCccchhhhhhcCCCCC----CccccccCC-CccccCcccccccccccccCcCCCCCCcCCCCccccc
Q psy16818 157 PANVRSTVRWDYQPDICKDYKETGFCGFG----DSCKFLHDR-TDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCY 231 (403)
Q Consensus 157 ~~~~r~~~~~dyqpdiCkdYk~tG~CgfG----DsCkflHdr-~dy~~gwqle~e~e~~~~~~~ei~~~deed~~~l~C~ 231 (403)
|.++=.-+.|.-|-|.=..|.+---|.|. |.|..+|.- -.+. +.++....... . --++| +||
T Consensus 113 pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~-------~s~d~as~~~~----~-~tELP-TCp 179 (493)
T KOG0804|consen 113 PNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVT-------ESEDGASEPPT----G-LTELP-TCP 179 (493)
T ss_pred CceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEE-------ecccCCCCCCC----C-cccCC-Ccc
Confidence 44555556666677777777776667776 577777642 2211 00100000000 0 01133 799
Q ss_pred cccccccCCc----ccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 232 ICRNSFKDPV----MTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 232 IC~~~~~~Pv----~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
||++.+...+ .+.|.|+|...|+..|+. .+||+||--.
T Consensus 180 VCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 180 VCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred hhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence 9999986543 558999999999999986 5688887644
No 52
>KOG0827|consensus
Probab=96.83 E-value=0.0053 Score=62.69 Aligned_cols=44 Identities=30% Similarity=0.650 Sum_probs=32.9
Q ss_pred cccccccccccCC----cccccCCcccHHhHHHHhcc--C-CCccccCccc
Q psy16818 228 FKCYICRNSFKDP----VMTKCKHYFCTKCALEHFKK--T-PKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~~~~--~-~~CP~Cr~~~ 271 (403)
-.|.||.+.+..- .+-.|||+|...|+.+|+.. + ..||+|+-..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4699996655322 13359999999999999984 2 5799999555
No 53
>KOG4739|consensus
Probab=96.67 E-value=0.0093 Score=57.48 Aligned_cols=41 Identities=32% Similarity=0.770 Sum_probs=29.9
Q ss_pred cccccccccc-CCc-ccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 229 KCYICRNSFK-DPV-MTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~-~Pv-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
-|..|..... +|. +|.|+|+||..|...... ..||+|++++
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSI 47 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCc--ccccccccee
Confidence 4777765443 343 679999999999865332 2799999996
No 54
>KOG1002|consensus
Probab=96.58 E-value=0.00094 Score=70.28 Aligned_cols=50 Identities=24% Similarity=0.617 Sum_probs=42.3
Q ss_pred CCCCccccccccccccCCcccccCCcccHHhHHHHhc-----cCCCccccCcccc
Q psy16818 223 EDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-----KTPKCYICQKNTF 272 (403)
Q Consensus 223 ed~~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-----~~~~CP~Cr~~~~ 272 (403)
++.....|.+|.++-.+++.+.|-|.||..|+.++.. ..-.||.|-..+.
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3445678999999999999999999999999988765 2457999988774
No 55
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.51 E-value=0.0014 Score=53.02 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=26.3
Q ss_pred ccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 244 KCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 244 ~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
.|.|.|...||.+|+.....||+|++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 7999999999999999888999999876
No 56
>KOG4692|consensus
Probab=96.51 E-value=0.0014 Score=66.10 Aligned_cols=46 Identities=24% Similarity=0.670 Sum_probs=41.6
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
-.|+||.--..+.+..||+|.-|..||.+++-+.+.|..|...+..
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4799999988888999999999999999999999999999887653
No 57
>KOG1645|consensus
Probab=96.49 E-value=0.0053 Score=63.08 Aligned_cols=45 Identities=27% Similarity=0.662 Sum_probs=36.9
Q ss_pred ccccccccccccCC-----cccccCCcccHHhHHHHhcc--CCCccccCccc
Q psy16818 227 PFKCYICRNSFKDP-----VMTKCKHYFCTKCALEHFKK--TPKCYICQKNT 271 (403)
Q Consensus 227 ~l~C~IC~~~~~~P-----v~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~ 271 (403)
-..|+||++.|.-| +.+.|||.|-+.||+.|+.+ ...||.|....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 35799999999877 45689999999999999963 24699996644
No 58
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.38 E-value=0.0022 Score=47.27 Aligned_cols=40 Identities=28% Similarity=0.804 Sum_probs=31.7
Q ss_pred ccccccc--cccCCcccccC-----CcccHHhHHHHhcc--CCCccccC
Q psy16818 229 KCYICRN--SFKDPVMTKCK-----HYFCTKCALEHFKK--TPKCYICQ 268 (403)
Q Consensus 229 ~C~IC~~--~~~~Pv~t~Cg-----H~FC~~Ci~~~~~~--~~~CP~Cr 268 (403)
.|.||+. .-.+|.+.||. |+|...|+.+|+.. ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 33467788885 89999999999964 44899995
No 59
>KOG1734|consensus
Probab=96.37 E-value=0.00096 Score=65.11 Aligned_cols=44 Identities=20% Similarity=0.486 Sum_probs=36.2
Q ss_pred cccccccccccCC----------cccccCCcccHHhHHHHhc--cCCCccccCccc
Q psy16818 228 FKCYICRNSFKDP----------VMTKCKHYFCTKCALEHFK--KTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~P----------v~t~CgH~FC~~Ci~~~~~--~~~~CP~Cr~~~ 271 (403)
-.|.||...+... ..+.|+|+|++.||+.|.- +...||.|...+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 3699999877433 3679999999999999975 567899998876
No 60
>KOG4367|consensus
Probab=96.20 E-value=0.002 Score=66.53 Aligned_cols=34 Identities=26% Similarity=0.821 Sum_probs=30.8
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK 259 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~ 259 (403)
.++.|+||...|.+||+++|+|..|..|++..+.
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 3478999999999999999999999999987664
No 61
>KOG1571|consensus
Probab=96.05 E-value=0.0021 Score=65.01 Aligned_cols=46 Identities=30% Similarity=0.695 Sum_probs=36.8
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
.|..|.||.+.+.+.+.++|||.-| |..-. ...+.||+||..+...
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRLV 349 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHHHH
Confidence 7789999999999999999999976 66433 3456699999876543
No 62
>KOG1493|consensus
Probab=96.01 E-value=0.0019 Score=51.77 Aligned_cols=43 Identities=30% Similarity=0.745 Sum_probs=33.2
Q ss_pred cccccccccc------------CCccc-ccCCcccHHhHHHHhcc---CCCccccCccc
Q psy16818 229 KCYICRNSFK------------DPVMT-KCKHYFCTKCALEHFKK---TPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~------------~Pv~t-~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~ 271 (403)
.|.||+-.|. -|+++ -|.|.|...||.+|+.. ...||+||+..
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 5888877773 14544 79999999999999873 24699999865
No 63
>KOG1785|consensus
Probab=95.97 E-value=0.0029 Score=64.78 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=39.4
Q ss_pred ccccccccccCCcccccCCcccHHhHHHHhcc--CCCccccCcccccc
Q psy16818 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKK--TPKCYICQKNTFGE 274 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 274 (403)
.|.||-+.=++-.+-+|||..|..|+..|... ...||.||..+.|.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 69999998887777799999999999999753 56899999998653
No 64
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.94 E-value=0.0063 Score=59.54 Aligned_cols=46 Identities=28% Similarity=0.467 Sum_probs=37.8
Q ss_pred CccccccccccccC--C-c-ccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKD--P-V-MTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~--P-v-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.+|.|||+...|.. + | +.+|||+|+..++.+.- ....||+|..++.
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 78999999999843 2 2 44999999999999874 4567999999994
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.80 E-value=0.0055 Score=61.80 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=41.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc--cCCCccccCccccccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK--KTPKCYICQKNTFGEF 275 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 275 (403)
....|.||-+-+.-..++||+|-.|.-|..+... ..+.||+|+.....++
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 4467999999988778999999999999877643 6788999999885443
No 66
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.64 E-value=0.0029 Score=49.98 Aligned_cols=45 Identities=27% Similarity=0.539 Sum_probs=22.7
Q ss_pred ccccccccccc-C---Cccc----ccCCcccHHhHHHHhcc---C--------CCccccCcccc
Q psy16818 228 FKCYICRNSFK-D---PVMT----KCKHYFCTKCALEHFKK---T--------PKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~~~~-~---Pv~t----~CgH~FC~~Ci~~~~~~---~--------~~CP~Cr~~~~ 272 (403)
+.|.||...+. . |.+. .|++.|+..||.+|+.. . ..||.|+.++.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 45999998764 2 3322 79999999999999872 1 14999998874
No 67
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.62 E-value=0.0049 Score=46.53 Aligned_cols=43 Identities=19% Similarity=0.436 Sum_probs=35.3
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..|..|...-...++++|||..|..|..-+ .-..||.|..++.
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~ 50 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFE 50 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh--hccCCCCCCCccc
Confidence 358888888788899999999999998654 3367999999874
No 68
>KOG4185|consensus
Probab=95.55 E-value=0.015 Score=57.31 Aligned_cols=44 Identities=30% Similarity=0.742 Sum_probs=36.7
Q ss_pred ccccccccccc------CCcccccCCcccHHhHHHHhccC-CCccccCccc
Q psy16818 228 FKCYICRNSFK------DPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~------~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~ 271 (403)
+.|-||.+.|. .|-++.|||+||..|+....... -.||.||.++
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 46999999885 47788999999999998877643 3599999997
No 69
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.55 E-value=0.0049 Score=68.78 Aligned_cols=44 Identities=27% Similarity=0.708 Sum_probs=35.6
Q ss_pred cccccccccc-----CC--cccccCCcccHHhHHHHhcc--CCCccccCcccc
Q psy16818 229 KCYICRNSFK-----DP--VMTKCKHYFCTKCALEHFKK--TPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~-----~P--v~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~~ 272 (403)
.|+||..++. -| ....|.|-|+-.|+.+|++. ...||.||..+.
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5999998874 23 34579999999999999984 467999997654
No 70
>KOG3039|consensus
Probab=95.13 E-value=0.014 Score=56.57 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=41.2
Q ss_pred CccccccccccccCC----cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDP----VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..+.|+||...+.+. ++-+|||+||..|.........-||+|..++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 568999999999875 34499999999999999998889999999883
No 71
>KOG1677|consensus
Probab=95.05 E-value=0.0098 Score=59.57 Aligned_cols=34 Identities=26% Similarity=0.859 Sum_probs=28.8
Q ss_pred eeeeeccCCCccchhhhhhcCCCCCCccccccCC
Q psy16818 161 RSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDR 194 (403)
Q Consensus 161 r~~~~~dyqpdiCkdYk~tG~CgfGDsCkflHdr 194 (403)
......-|+-.+|..|..||+|.||..|+|.|..
T Consensus 168 ~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 168 QVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred hhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4444556888899999999999999999999964
No 72
>KOG4275|consensus
Probab=94.95 E-value=0.0047 Score=60.99 Aligned_cols=41 Identities=34% Similarity=0.740 Sum_probs=34.9
Q ss_pred ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
...|.||++...+.+.|+|||. -|..|-.++ ..||+||+-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHH
Confidence 4689999999999999999998 499997554 3799999854
No 73
>KOG1001|consensus
Probab=94.67 E-value=0.013 Score=64.54 Aligned_cols=43 Identities=26% Similarity=0.747 Sum_probs=37.7
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhcc--CCCccccCccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK--TPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~ 271 (403)
+.|+||.+ ...+++++|+|.||..|+...+.. ...||.|+..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 68999999 778899999999999999998763 34699999877
No 74
>KOG0826|consensus
Probab=94.42 E-value=0.022 Score=57.23 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=39.0
Q ss_pred cccccccccccCCcccc-cCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 228 FKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
-.|+||+....+|.++. -|-+||..|+..+......||+=+.++.
T Consensus 301 ~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 301 EVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred ccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 47999999999997764 5999999999999998899998766653
No 75
>KOG2932|consensus
Probab=94.30 E-value=0.013 Score=58.36 Aligned_cols=42 Identities=29% Similarity=0.622 Sum_probs=32.5
Q ss_pred cccccccccccCC-cccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSFKDP-VMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
..|.-|...+..- -+++|+|+||..|++.. ..+.||.|-..+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHH
Confidence 4688888766543 47799999999998654 357899997766
No 76
>KOG3800|consensus
Probab=94.18 E-value=0.33 Score=48.25 Aligned_cols=43 Identities=23% Similarity=0.664 Sum_probs=34.5
Q ss_pred ccccccc-cccCCc----ccccCCcccHHhHHHHhcc-CCCccccCccc
Q psy16818 229 KCYICRN-SFKDPV----MTKCKHYFCTKCALEHFKK-TPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~-~~~~Pv----~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~ 271 (403)
.||+|.. .+.+|- +-+|+|..|.+|....+.. ...||.|...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 5999986 456772 2289999999999998874 45799998877
No 77
>KOG1814|consensus
Probab=94.18 E-value=0.034 Score=57.35 Aligned_cols=46 Identities=26% Similarity=0.528 Sum_probs=34.4
Q ss_pred CccccccccccccCC---cccccCCcccHHhHHHHhcc--------CCCccccCccc
Q psy16818 226 LPFKCYICRNSFKDP---VMTKCKHYFCTKCALEHFKK--------TPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P---v~t~CgH~FC~~Ci~~~~~~--------~~~CP~Cr~~~ 271 (403)
.-+.|.||++...-. +.+||+|+||..|+..++.. .-.||.|.-.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 346799999987643 47799999999999998862 23588765443
No 78
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.03 E-value=0.024 Score=41.55 Aligned_cols=43 Identities=30% Similarity=0.769 Sum_probs=26.0
Q ss_pred ccccccccccCCcccccC-CcccHHhHHHHhccCCCccccCccccc
Q psy16818 229 KCYICRNSFKDPVMTKCK-HYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~Cg-H~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
.|--|- |.+--.+.|. ||.|..|+...+..+..||+|..+++.
T Consensus 4 nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 344443 3344567885 999999999999999999999988754
No 79
>KOG2930|consensus
Probab=93.50 E-value=0.039 Score=46.82 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=25.3
Q ss_pred ccCCcccHHhHHHHhccCCCccccCcc
Q psy16818 244 KCKHYFCTKCALEHFKKTPKCYICQKN 270 (403)
Q Consensus 244 ~CgH~FC~~Ci~~~~~~~~~CP~Cr~~ 270 (403)
.|.|.|...||.+|++....||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 799999999999999999999999775
No 80
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.03 E-value=0.57 Score=45.53 Aligned_cols=45 Identities=24% Similarity=0.701 Sum_probs=34.1
Q ss_pred cccccccccc-ccCCc----ccc-cCCcccHHhHHHHhccC-CCcc--ccCccc
Q psy16818 227 PFKCYICRNS-FKDPV----MTK-CKHYFCTKCALEHFKKT-PKCY--ICQKNT 271 (403)
Q Consensus 227 ~l~C~IC~~~-~~~Pv----~t~-CgH~FC~~Ci~~~~~~~-~~CP--~Cr~~~ 271 (403)
...||||... +-+|- +-| |-|..|.+|..+.+... ..|| -|++.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3579999964 55772 224 99999999999999854 4699 787765
No 81
>KOG3970|consensus
Probab=92.75 E-value=0.11 Score=49.95 Aligned_cols=57 Identities=23% Similarity=0.522 Sum_probs=41.2
Q ss_pred cccccccccc--CCcccccCCcccHHhHHHHhccC--------CCccccCccccccccchHHHHHHH
Q psy16818 229 KCYICRNSFK--DPVMTKCKHYFCTKCALEHFKKT--------PKCYICQKNTFGEFRTAEKIVQKL 285 (403)
Q Consensus 229 ~C~IC~~~~~--~Pv~t~CgH~FC~~Ci~~~~~~~--------~~CP~Cr~~~~~~~~~~~~Li~~l 285 (403)
-|..|...+. +-+.+.|-|.|.+.|+.+|-..- ..||.|...+....|....+++.+
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aL 118 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEAL 118 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHH
Confidence 4999999886 45778999999999999997632 369999888754444333333333
No 82
>KOG4445|consensus
Probab=92.58 E-value=0.033 Score=55.43 Aligned_cols=44 Identities=27% Similarity=0.737 Sum_probs=34.7
Q ss_pred ccccccccccC-C--cccccCCcccHHhHHHHhcc-----------------------CCCccccCcccc
Q psy16818 229 KCYICRNSFKD-P--VMTKCKHYFCTKCALEHFKK-----------------------TPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~-P--v~t~CgH~FC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~ 272 (403)
.|.||+--|.+ | ++|.|.|||...|+-+++.. ...||+||..+.
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 59999988864 4 57899999999999887641 124999999883
No 83
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.23 E-value=0.14 Score=37.84 Aligned_cols=42 Identities=17% Similarity=0.566 Sum_probs=20.9
Q ss_pred cccccccccC--Cccc--ccCCcccHHhHHHHhc-cCCCccccCccc
Q psy16818 230 CYICRNSFKD--PVMT--KCKHYFCTKCALEHFK-KTPKCYICQKNT 271 (403)
Q Consensus 230 C~IC~~~~~~--Pv~t--~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~ 271 (403)
|++|.+.+.. --.. +||+-+|..|...... ....||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6788887722 1233 6899999999998886 467899999864
No 84
>KOG0298|consensus
Probab=91.88 E-value=0.047 Score=63.07 Aligned_cols=47 Identities=23% Similarity=0.569 Sum_probs=40.8
Q ss_pred CCcccccccccccc-CCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 225 HLPFKCYICRNSFK-DPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 225 ~~~l~C~IC~~~~~-~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
..++.|.||++.+. ...+..|||.||..|...|......||+|....
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 36679999999998 456789999999999999999999999997443
No 85
>KOG1941|consensus
Probab=91.67 E-value=0.051 Score=55.78 Aligned_cols=44 Identities=27% Similarity=0.599 Sum_probs=36.1
Q ss_pred Ccccccccccccc-CC---cccccCCcccHHhHHHHhcc--CCCccccCc
Q psy16818 226 LPFKCYICRNSFK-DP---VMTKCKHYFCTKCALEHFKK--TPKCYICQK 269 (403)
Q Consensus 226 ~~l~C~IC~~~~~-~P---v~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~ 269 (403)
..+.|..|.+.+- .| -.+||.|.|+..|+..++.+ ..+||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 7789999999873 22 36799999999999998864 457999994
No 86
>KOG2114|consensus
Probab=91.51 E-value=0.073 Score=59.25 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=35.4
Q ss_pred ccccccccccCCcc-cccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 229 KCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~-t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
.|..|...+.-|++ ..|||.|+..|+. .+...||.|+....+
T Consensus 842 kCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 842 KCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRG 884 (933)
T ss_pred eecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhhh
Confidence 89999999999965 5999999999997 456789999875443
No 87
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=90.84 E-value=0.11 Score=30.96 Aligned_cols=18 Identities=44% Similarity=0.837 Sum_probs=14.1
Q ss_pred cchhhhhhcCCCCCCcccccc
Q psy16818 172 ICKDYKETGFCGFGDSCKFLH 192 (403)
Q Consensus 172 iCkdYk~tG~CgfGDsCkflH 192 (403)
+||.+.. |.+|++|.|.|
T Consensus 1 ~Ck~~~~---C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC---CCCCCcCccCC
Confidence 4774433 99999999999
No 88
>KOG3002|consensus
Probab=90.44 E-value=0.18 Score=50.59 Aligned_cols=43 Identities=26% Similarity=0.709 Sum_probs=35.0
Q ss_pred cccccccccccCCccccc--CCcccHHhHHHHhccCCCccccCcccccc
Q psy16818 228 FKCYICRNSFKDPVMTKC--KHYFCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~C--gH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
+.||||...+..|+. .| ||.-|..|-.+ ....||.|+.++..+
T Consensus 49 leCPvC~~~l~~Pi~-QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPIF-QCDNGHLACSSCRTK---VSNKCPTCRLPIGNI 93 (299)
T ss_pred ccCchhhccCcccce-ecCCCcEehhhhhhh---hcccCCccccccccH
Confidence 579999999998864 55 89999999864 346799999998744
No 89
>KOG4362|consensus
Probab=89.51 E-value=0.1 Score=57.28 Aligned_cols=46 Identities=28% Similarity=0.728 Sum_probs=38.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhcc---CCCccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK---TPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~ 271 (403)
..+.|+||...+..|+.+.|.|.||..|+...+.. ...||+|+...
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 34679999999999999999999999998876653 34699998655
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.49 E-value=0.4 Score=48.67 Aligned_cols=43 Identities=16% Similarity=0.446 Sum_probs=32.1
Q ss_pred ccccccccccC--C--cccccCCcccHHhHHHHhcc-CCCccccCccc
Q psy16818 229 KCYICRNSFKD--P--VMTKCKHYFCTKCALEHFKK-TPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~--P--v~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~ 271 (403)
.|++|++.+.. . .--+||--.|.-|+-...+. +..||.||...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 49999998742 2 23478888899998766553 46799999877
No 91
>KOG2817|consensus
Probab=89.27 E-value=0.33 Score=50.11 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=43.1
Q ss_pred ccccccccCcCCCCCCcC-CCCcccccccccccc---CCcccccCCcccHHhHHHHhccC---CCccccCccc
Q psy16818 206 EHEDGDNKNYEIPDSDEE-DHLPFKCYICRNSFK---DPVMTKCKHYFCTKCALEHFKKT---PKCYICQKNT 271 (403)
Q Consensus 206 e~e~~~~~~~ei~~~dee-d~~~l~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~~~~---~~CP~Cr~~~ 271 (403)
+|..-++-..+|....+= -..-|.|||=.+.-. .|+.+.|||+.|..-+.+..+.. .+||.|-...
T Consensus 312 ~W~~~deLPveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 312 EWNTKDELPVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred CccccccCccceeccccccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 455544444444432111 123478998665443 46899999999999998887643 5899996544
No 92
>KOG3039|consensus
Probab=89.23 E-value=0.23 Score=48.40 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=28.3
Q ss_pred ccccccccccCCcccccCCcccHHhHHHHh
Q psy16818 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHF 258 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~ 258 (403)
.|++|+.++.+||+++=||.||..||++++
T Consensus 45 cCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 45 CCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred eeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 689999999999999999999999999865
No 93
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.90 E-value=0.12 Score=42.75 Aligned_cols=27 Identities=26% Similarity=0.669 Sum_probs=23.2
Q ss_pred ccccccccccCCc--ccccCCcccHHhHH
Q psy16818 229 KCYICRNSFKDPV--MTKCKHYFCTKCAL 255 (403)
Q Consensus 229 ~C~IC~~~~~~Pv--~t~CgH~FC~~Ci~ 255 (403)
.|++|...+.+++ +.||||.|+..|+.
T Consensus 80 ~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 80 KCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 5999999998764 56999999999974
No 94
>KOG3161|consensus
Probab=88.16 E-value=0.19 Score=54.54 Aligned_cols=36 Identities=33% Similarity=0.814 Sum_probs=30.4
Q ss_pred ccccccccccc----CCcccccCCcccHHhHHHHhccCCCcc
Q psy16818 228 FKCYICRNSFK----DPVMTKCKHYFCTKCALEHFKKTPKCY 265 (403)
Q Consensus 228 l~C~IC~~~~~----~Pv~t~CgH~FC~~Ci~~~~~~~~~CP 265 (403)
+.|+||...|. .|+.+.|||+.|..|+...+. ..||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 57999987774 689999999999999988776 4577
No 95
>KOG1940|consensus
Probab=88.04 E-value=0.39 Score=47.67 Aligned_cols=44 Identities=34% Similarity=0.717 Sum_probs=37.1
Q ss_pred Ccccccccccccc----CCcccccCCcccHHhHHHHhccCCCccccCc
Q psy16818 226 LPFKCYICRNSFK----DPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269 (403)
Q Consensus 226 ~~l~C~IC~~~~~----~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~ 269 (403)
.++-||||.+.+. .|..++|||+....|+.........||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 5556999998764 5678899999999999988777789999987
No 96
>KOG1428|consensus
Probab=87.54 E-value=0.64 Score=54.80 Aligned_cols=44 Identities=25% Similarity=0.640 Sum_probs=33.4
Q ss_pred ccccccccc--cCC-cccccCCcccHHhHHHHhccC----------CCccccCcccc
Q psy16818 229 KCYICRNSF--KDP-VMTKCKHYFCTKCALEHFKKT----------PKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~--~~P-v~t~CgH~FC~~Ci~~~~~~~----------~~CP~Cr~~~~ 272 (403)
.|.||...- ..| |.+.|+|.|...|.+..+... -.||+|..+++
T Consensus 3488 mCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3488 MCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred eEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 699998643 234 688999999999988766531 26999988774
No 97
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.00 E-value=0.41 Score=35.36 Aligned_cols=44 Identities=32% Similarity=0.609 Sum_probs=22.3
Q ss_pred ccccccccccccCCccc-ccCCcccHHh--HHHHhcc--CCCccccCcc
Q psy16818 227 PFKCYICRNSFKDPVMT-KCKHYFCTKC--ALEHFKK--TPKCYICQKN 270 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t-~CgH~FC~~C--i~~~~~~--~~~CP~Cr~~ 270 (403)
.+.|+|....+..|+.. .|.|.-|.+- +...... .-.||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999855 7999976543 2222222 2369999864
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=86.59 E-value=0.58 Score=42.79 Aligned_cols=32 Identities=28% Similarity=0.722 Sum_probs=22.8
Q ss_pred cccccccccccCCccccc-------CCccc------HHhHHHHhc
Q psy16818 228 FKCYICRNSFKDPVMTKC-------KHYFC------TKCALEHFK 259 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~C-------gH~FC------~~Ci~~~~~ 259 (403)
..|+||++...+.|+|-| ..|.| ..|+.++.+
T Consensus 3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 579999999999987743 33333 568877643
No 99
>KOG3113|consensus
Probab=86.38 E-value=1.1 Score=43.79 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=43.4
Q ss_pred CCccccccccccccC----CcccccCCcccHHhHHHHhccCCCccccCcccc----ccccchHHHHHHHHH
Q psy16818 225 HLPFKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF----GEFRTAEKIVQKLKD 287 (403)
Q Consensus 225 ~~~l~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~----~~~~~~~~Li~~l~~ 287 (403)
..+|.|+|-.-.+.. -+...|||+|-..-+.+. +...|++|++.+. -++|.+.+-++.|+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg~~E~~dllk~ 177 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNGTEEDVDLLKT 177 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCCCHHHHHHHHH
Confidence 378999997766543 345699999999888765 3578999999984 245666555555443
No 100
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.05 E-value=0.52 Score=41.88 Aligned_cols=45 Identities=22% Similarity=0.630 Sum_probs=37.8
Q ss_pred cccccccccccCCccc----ccCCcccHHhHHHHhcc---CCCccccCcccc
Q psy16818 228 FKCYICRNSFKDPVMT----KCKHYFCTKCALEHFKK---TPKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t----~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~~ 272 (403)
..|.||.+...+...+ =||-..|..|....|+. .+.||+|+.++.
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 5799999999888666 38988999999998884 578999998874
No 101
>KOG1100|consensus
Probab=85.96 E-value=0.26 Score=46.87 Aligned_cols=39 Identities=23% Similarity=0.622 Sum_probs=30.9
Q ss_pred cccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCcccc
Q psy16818 230 CYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 230 C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
|-+|.+.-..-+++||.|. +|..|-.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8899887776567799988 89999753 356999988653
No 102
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=85.34 E-value=0.38 Score=47.20 Aligned_cols=41 Identities=32% Similarity=0.716 Sum_probs=28.1
Q ss_pred cccccCCcceeeeeeccCCCccchhhhhhcCCCCC---------CccccccC
Q psy16818 151 KGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFG---------DSCKFLHD 193 (403)
Q Consensus 151 ~gp~~~~~~~r~~~~~dyqpdiCkdYk~tG~CgfG---------DsCkflHd 193 (403)
.||-|...+-+.++.| .-|+|||.|- .|||.+. ..|..+|+
T Consensus 12 MG~~Rn~~~~~~~~~f-~D~~VCk~~L-~g~CPhdLF~nTK~DLG~C~kiHd 61 (254)
T PF03194_consen 12 MGSNRNGDPSKRKVHF-TDPDVCKYFL-VGFCPHDLFVNTKSDLGPCPKIHD 61 (254)
T ss_pred cCCccCCCccccCCCC-CCcccCHHHH-hCCCcHHHHhhcccccchhhhhcC
Confidence 4677765554444555 6899998775 8999876 35766775
No 103
>KOG2034|consensus
Probab=84.80 E-value=0.37 Score=54.15 Aligned_cols=31 Identities=26% Similarity=0.676 Sum_probs=26.0
Q ss_pred cccccccccc-CC-cccccCCcccHHhHHHHhc
Q psy16818 229 KCYICRNSFK-DP-VMTKCKHYFCTKCALEHFK 259 (403)
Q Consensus 229 ~C~IC~~~~~-~P-v~t~CgH~FC~~Ci~~~~~ 259 (403)
.|.+|...+. .| ++.+|||.|+..|+.+...
T Consensus 819 ~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 819 SCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred chHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 6999998764 56 4669999999999998864
No 104
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.43 E-value=0.89 Score=32.54 Aligned_cols=38 Identities=21% Similarity=0.564 Sum_probs=22.6
Q ss_pred cccccccccCCccc---ccCCcccHHhHHHHhccCC--Ccccc
Q psy16818 230 CYICRNSFKDPVMT---KCKHYFCTKCALEHFKKTP--KCYIC 267 (403)
Q Consensus 230 C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~~~~~~--~CP~C 267 (403)
|.+|.+++..-+.= .|+-.+...|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888888765533 4988899999999988544 79988
No 105
>KOG1039|consensus
Probab=84.19 E-value=0.41 Score=48.98 Aligned_cols=25 Identities=48% Similarity=1.059 Sum_probs=21.6
Q ss_pred ccchhhhhhcCCCCCCccccccCCCc
Q psy16818 171 DICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 171 diCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
.||| |.+-|+|+||+-|+|.|++.+
T Consensus 9 tic~-~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICK-YYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhh-hcccccccccceeeeeccCch
Confidence 7896 556899999999999999873
No 106
>KOG2185|consensus
Probab=82.53 E-value=0.62 Score=48.29 Aligned_cols=23 Identities=39% Similarity=0.943 Sum_probs=19.1
Q ss_pred cchhhhhhcCCCCCCccccccCCC
Q psy16818 172 ICKDYKETGFCGFGDSCKFLHDRT 195 (403)
Q Consensus 172 iCkdYk~tG~CgfGDsCkflHdr~ 195 (403)
+|+ |+..|-|.||.+|+|.|+..
T Consensus 142 pC~-ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 142 PCK-FFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred cch-HhhccccccCcccccccCcc
Confidence 785 55679999999999999743
No 107
>KOG1677|consensus
Probab=80.72 E-value=0.62 Score=46.63 Aligned_cols=27 Identities=30% Similarity=1.110 Sum_probs=23.5
Q ss_pred CCCccchhhhhhcCCCC-CCccccccCC
Q psy16818 168 YQPDICKDYKETGFCGF-GDSCKFLHDR 194 (403)
Q Consensus 168 yqpdiCkdYk~tG~Cgf-GDsCkflHdr 194 (403)
|.-.+|..|.++|.|.| |++|+|-|..
T Consensus 130 ~kt~lc~~~~~~g~c~y~ge~crfah~~ 157 (332)
T KOG1677|consen 130 YKTPLCRSFRKSGTCKYRGEQCRFAHGL 157 (332)
T ss_pred ccCCcceeeecCccccccCchhhhcCCc
Confidence 45569999999999999 9999998853
No 108
>KOG3579|consensus
Probab=80.27 E-value=0.74 Score=45.73 Aligned_cols=36 Identities=31% Similarity=0.837 Sum_probs=30.5
Q ss_pred CCccccccccccccCCccccc----CCcccHHhHHHHhcc
Q psy16818 225 HLPFKCYICRNSFKDPVMTKC----KHYFCTKCALEHFKK 260 (403)
Q Consensus 225 ~~~l~C~IC~~~~~~Pv~t~C----gH~FC~~Ci~~~~~~ 260 (403)
..+|.|.+|.+.+.+-....| .|.||..|-++..+.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 477999999999988777666 599999999888763
No 109
>KOG1812|consensus
Probab=78.79 E-value=1.2 Score=46.26 Aligned_cols=46 Identities=26% Similarity=0.599 Sum_probs=32.1
Q ss_pred CccccccccccccCC----cccccCCcccHHhHHHHhcc------CCCccc--cCccc
Q psy16818 226 LPFKCYICRNSFKDP----VMTKCKHYFCTKCALEHFKK------TPKCYI--CQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~~~~------~~~CP~--Cr~~~ 271 (403)
....|.||......+ .+..|+|.||..|+.+++.. ...||. |...+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l 202 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRL 202 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccC
Confidence 456799999433322 36689999999999998862 345764 55554
No 110
>KOG3268|consensus
Probab=78.65 E-value=1.3 Score=41.26 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=34.1
Q ss_pred ccccccccccccC---C--c--ccccCCcccHHhHHHHhccC-----------CCccccCcccc
Q psy16818 227 PFKCYICRNSFKD---P--V--MTKCKHYFCTKCALEHFKKT-----------PKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~---P--v--~t~CgH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 272 (403)
-..|.||..+--+ | + .+.||..|+.-|+..|++.. ..||.|..++.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 3579999865432 2 2 34899999999999999741 25999988764
No 111
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=78.55 E-value=0.34 Score=38.51 Aligned_cols=39 Identities=26% Similarity=0.599 Sum_probs=23.8
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
+.||.|...+..-- +|++|..|-.. +.....||.|..++
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC----CEEECcccccc-ceecccCCCcccHH
Confidence 57999998764221 89999999864 55567899999988
No 112
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=77.91 E-value=2.6 Score=38.67 Aligned_cols=46 Identities=22% Similarity=0.587 Sum_probs=33.6
Q ss_pred CccccccccccccCCcccccC--C---cccHHhHHHHhcc--CCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCK--H---YFCTKCALEHFKK--TPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~Cg--H---~FC~~Ci~~~~~~--~~~CP~Cr~~~~ 272 (403)
.+..|-||.+.-. +...||. . +-+..|+.+|... ...|++|+.+..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3457999998753 3345654 3 3489999999874 457999999883
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.45 E-value=35 Score=32.99 Aligned_cols=20 Identities=25% Similarity=1.004 Sum_probs=15.9
Q ss_pred ccccccccccCCcccccCCcccHHhHHH
Q psy16818 229 KCYICRNSFKDPVMTKCKHYFCTKCALE 256 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~ 256 (403)
.|+||. .+..+.+|..|+..
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~ 20 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNN 20 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHH
Confidence 499998 35667789999976
No 114
>KOG2068|consensus
Probab=76.12 E-value=5.9 Score=40.25 Aligned_cols=50 Identities=22% Similarity=0.451 Sum_probs=38.7
Q ss_pred Ccccccccccccc--CC--cccccCCcccHHhHHHHhccCCCccccCccccccc
Q psy16818 226 LPFKCYICRNSFK--DP--VMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEF 275 (403)
Q Consensus 226 ~~l~C~IC~~~~~--~P--v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 275 (403)
.|-.|+||.+... +- +-.+|++..|..|+.........||.|+++.....
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCc
Confidence 5678999999773 22 23478888999999888888889999998775433
No 115
>KOG1815|consensus
Probab=73.10 E-value=2 Score=45.23 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=28.9
Q ss_pred CccccccccccccC-CcccccCCcccHHhHHHHhc
Q psy16818 226 LPFKCYICRNSFKD-PVMTKCKHYFCTKCALEHFK 259 (403)
Q Consensus 226 ~~l~C~IC~~~~~~-Pv~t~CgH~FC~~Ci~~~~~ 259 (403)
....|.||.+.+.. .+.+.|||.||..|+..++.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 45789999999885 56779999999999988775
No 116
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=71.46 E-value=2.2 Score=43.07 Aligned_cols=44 Identities=23% Similarity=0.464 Sum_probs=33.2
Q ss_pred ccccccccccc---CCcccccCCcccHHhHHHHhcc---CCCccccCccc
Q psy16818 228 FKCYICRNSFK---DPVMTKCKHYFCTKCALEHFKK---TPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~ 271 (403)
|.||+=.+.-. .|+++.|||+.-..-+....+. ..+||.|-..+
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~ 386 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMS 386 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence 68887665543 4789999999999988877663 46799995543
No 117
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=71.04 E-value=2.2 Score=31.00 Aligned_cols=38 Identities=29% Similarity=0.817 Sum_probs=23.8
Q ss_pred cccccccccC--CcccccC--C---cccHHhHHHHhc--cCCCcccc
Q psy16818 230 CYICRNSFKD--PVMTKCK--H---YFCTKCALEHFK--KTPKCYIC 267 (403)
Q Consensus 230 C~IC~~~~~~--Pv~t~Cg--H---~FC~~Ci~~~~~--~~~~CP~C 267 (403)
|-||++.... |.+.||+ - +.+..|+.+|+. ....|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677766532 5666664 3 568999999997 45679887
No 118
>PHA02862 5L protein; Provisional
Probab=70.05 E-value=3.5 Score=37.27 Aligned_cols=43 Identities=19% Similarity=0.499 Sum_probs=32.0
Q ss_pred ccccccccccCCcccccCC-----cccHHhHHHHhcc--CCCccccCcccc
Q psy16818 229 KCYICRNSFKDPVMTKCKH-----YFCTKCALEHFKK--TPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH-----~FC~~Ci~~~~~~--~~~CP~Cr~~~~ 272 (403)
.|-||.+.-.+. ..||.- +-+..|+.+|... ...|++|+.+..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 599999876443 456542 3589999999974 457999998873
No 119
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=69.69 E-value=1.7 Score=38.76 Aligned_cols=34 Identities=21% Similarity=0.550 Sum_probs=25.8
Q ss_pred ccccccccccccC--Cc-ccccC------CcccHHhHHHHhcc
Q psy16818 227 PFKCYICRNSFKD--PV-MTKCK------HYFCTKCALEHFKK 260 (403)
Q Consensus 227 ~l~C~IC~~~~~~--Pv-~t~Cg------H~FC~~Ci~~~~~~ 260 (403)
...|.||++.+.+ .| .++|| |.||..|+.+|.+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 4579999998876 33 34565 77999999999543
No 120
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=69.23 E-value=3 Score=34.76 Aligned_cols=34 Identities=32% Similarity=0.887 Sum_probs=27.3
Q ss_pred ccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
.|.||...+..+ ||.||..|+.. ...|.+|++.+
T Consensus 46 ~C~~CK~~v~q~-----g~~YCq~CAYk----kGiCamCGKki 79 (90)
T PF10235_consen 46 KCKICKTKVHQP-----GAKYCQTCAYK----KGICAMCGKKI 79 (90)
T ss_pred cccccccccccC-----CCccChhhhcc----cCcccccCCee
Confidence 699999877654 88999999743 35799999987
No 121
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=68.82 E-value=0.84 Score=45.26 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=23.7
Q ss_pred ccccccccccccCCcccc-----cCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 227 PFKCYICRNSFKDPVMTK-----CKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~-----CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
.-.||||.....-.++.. -.|.+|.-|-..|.-....||.|+..-..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~ 223 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHE 223 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCc
Confidence 357999999765444332 24668999999998877889999886543
No 122
>PRK04023 DNA polymerase II large subunit; Validated
Probab=67.56 E-value=4.3 Score=46.76 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=33.7
Q ss_pred CccccccccccccCCcccccC-----CcccHHhHHHHhccCCCccccCccccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCK-----HYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~Cg-----H~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
-...|+-|...........|| .+||..|-. ......||.|+..+..
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~--~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI--EVEEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccC--cCCCCcCCCCCCCCCc
Confidence 446899999886555566798 469999932 2334569999999854
No 123
>KOG1952|consensus
Probab=66.59 E-value=2.8 Score=47.23 Aligned_cols=45 Identities=29% Similarity=0.669 Sum_probs=34.6
Q ss_pred Ccccccccccccc--CCc--ccccCCcccHHhHHHHhcc-------CCCccccCcc
Q psy16818 226 LPFKCYICRNSFK--DPV--MTKCKHYFCTKCALEHFKK-------TPKCYICQKN 270 (403)
Q Consensus 226 ~~l~C~IC~~~~~--~Pv--~t~CgH~FC~~Ci~~~~~~-------~~~CP~Cr~~ 270 (403)
.-+.|.||.+.+. .|+ ...|-|+|...||..|-+. .-.||.|...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4568999999885 454 2368899999999999763 2369999843
No 124
>KOG2333|consensus
Probab=66.22 E-value=2 Score=45.73 Aligned_cols=32 Identities=34% Similarity=0.788 Sum_probs=24.5
Q ss_pred CCccchhhhhh--cCCCCCCccccccCCCccccC
Q psy16818 169 QPDICKDYKET--GFCGFGDSCKFLHDRTDYKYG 200 (403)
Q Consensus 169 qpdiCkdYk~t--G~CgfGDsCkflHdr~dy~~g 200 (403)
+--+|..-..+ --|.|||.|+|+||-.-|++-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLat 108 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLAT 108 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhc
Confidence 44577777777 479999999999998776643
No 125
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=65.66 E-value=1.9 Score=43.53 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=32.6
Q ss_pred cccccccccccCCcccc----cC--CcccHHhHHHHhccCCCccccCcc
Q psy16818 228 FKCYICRNSFKDPVMTK----CK--HYFCTKCALEHFKKTPKCYICQKN 270 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~----Cg--H~FC~~Ci~~~~~~~~~CP~Cr~~ 270 (403)
-.||||.....-.++.. =| +.+|.-|-.+|.-....||.|+..
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 47999999765443322 33 557999999998888899999874
No 126
>KOG0825|consensus
Probab=65.41 E-value=3.5 Score=46.16 Aligned_cols=43 Identities=12% Similarity=0.334 Sum_probs=30.1
Q ss_pred ccccccccccCC-------cccccCCcccHHhHHHHhcc------CCCccccCccc
Q psy16818 229 KCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKK------TPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~------~~~CP~Cr~~~ 271 (403)
.|.||..-+.+| .+-.|+|.||..||..|... .-.|++|..-+
T Consensus 98 Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 98 TSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 566665555543 33469999999999999863 23578887666
No 127
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=65.16 E-value=3.8 Score=42.26 Aligned_cols=27 Identities=22% Similarity=0.701 Sum_probs=21.6
Q ss_pred cCCcccHHhHHHHhcc-------------CCCccccCccc
Q psy16818 245 CKHYFCTKCALEHFKK-------------TPKCYICQKNT 271 (403)
Q Consensus 245 CgH~FC~~Ci~~~~~~-------------~~~CP~Cr~~~ 271 (403)
|....|..|+-+|+.. ...||+||+.+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 6667899999999852 23699999986
No 128
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=64.45 E-value=3.6 Score=41.42 Aligned_cols=29 Identities=24% Similarity=0.855 Sum_probs=24.7
Q ss_pred ccCCCccchhhhhhcCCCCCCccccccCC
Q psy16818 166 WDYQPDICKDYKETGFCGFGDSCKFLHDR 194 (403)
Q Consensus 166 ~dyqpdiCkdYk~tG~CgfGDsCkflHdr 194 (403)
-.|.-.-|+.+-..|||+||-.|-|-|+.
T Consensus 270 ~~frTePcinwe~sGyc~yg~Rc~F~hgd 298 (351)
T COG5063 270 QNFRTEPCINWEKSGYCPYGLRCCFKHGD 298 (351)
T ss_pred cccccCCccchhhcccCccccccccccCC
Confidence 35666789999999999999999999964
No 129
>KOG1763|consensus
Probab=63.39 E-value=3 Score=41.72 Aligned_cols=24 Identities=42% Similarity=0.913 Sum_probs=20.1
Q ss_pred CccchhhhhhcCCCCCCccccccCC
Q psy16818 170 PDICKDYKETGFCGFGDSCKFLHDR 194 (403)
Q Consensus 170 pdiCkdYk~tG~CgfGDsCkflHdr 194 (403)
--+| -|+..|.|+-|+.|+|+||.
T Consensus 92 SvvC-afFk~g~C~KG~kCKFsHdl 115 (343)
T KOG1763|consen 92 SVVC-AFFKQGTCTKGDKCKFSHDL 115 (343)
T ss_pred HHHH-HHHhccCCCCCCcccccchH
Confidence 3478 56678999999999999984
No 130
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=61.24 E-value=66 Score=32.19 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=41.4
Q ss_pred HHhccchhhhhhhhhhhhhhhcchhhhhHHHhhhhh------------hhHHHHHHHHHHHHHHHHHHHHHh
Q psy16818 341 KLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSK------------QNVDKLGEKLEAYLKNIRDQLEKK 400 (403)
Q Consensus 341 ~Laes~p~rraaq~v~~l~~k~K~~~~~qi~e~l~~------------~~v~el~E~~~~~i~~~~~~~~~~ 400 (403)
...+..+++|..+.++..|.... ...+.|..++.. ..-++..|.++..++.++.+|++-
T Consensus 58 ek~e~s~LkREnq~l~e~c~~le-k~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 58 EKNEYSALKRENQSLMESCENLE-KTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888898888877665 444555444433 233467788899999999999864
No 131
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=58.97 E-value=3 Score=42.14 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=32.8
Q ss_pred ccccccccccccCCccc---ccC--CcccHHhHHHHhccCCCccccCcc
Q psy16818 227 PFKCYICRNSFKDPVMT---KCK--HYFCTKCALEHFKKTPKCYICQKN 270 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t---~Cg--H~FC~~Ci~~~~~~~~~CP~Cr~~ 270 (403)
.-.||||.....-.++. .=| |.+|.-|-..|.-....||.|+..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 35799999976544321 233 557999999998888899999863
No 132
>KOG1492|consensus
Probab=57.18 E-value=3.7 Score=39.61 Aligned_cols=22 Identities=41% Similarity=1.230 Sum_probs=20.9
Q ss_pred cchhhhhhcCCCCCCccccccC
Q psy16818 172 ICKDYKETGFCGFGDSCKFLHD 193 (403)
Q Consensus 172 iCkdYk~tG~CgfGDsCkflHd 193 (403)
-|..|-..|.||-|-.|+|+|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 6999999999999999999996
No 133
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=57.03 E-value=7.2 Score=29.17 Aligned_cols=39 Identities=31% Similarity=0.787 Sum_probs=20.4
Q ss_pred cccccccccCCc----------ccccCCcccHHhHHHHhccCCCccccC
Q psy16818 230 CYICRNSFKDPV----------MTKCKHYFCTKCALEHFKKTPKCYICQ 268 (403)
Q Consensus 230 C~IC~~~~~~Pv----------~t~CgH~FC~~Ci~~~~~~~~~CP~Cr 268 (403)
|.-|+..|..+. -..|++.||..|=.=.....-.||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666665431 237999999999543334456799884
No 134
>KOG0309|consensus
Probab=56.35 E-value=6.5 Score=44.00 Aligned_cols=43 Identities=28% Similarity=0.636 Sum_probs=31.5
Q ss_pred ccccccccccccCC--cccccCCcccHHhHHHHhccCCCccc-cCc
Q psy16818 227 PFKCYICRNSFKDP--VMTKCKHYFCTKCALEHFKKTPKCYI-CQK 269 (403)
Q Consensus 227 ~l~C~IC~~~~~~P--v~t~CgH~FC~~Ci~~~~~~~~~CP~-Cr~ 269 (403)
.+.|.||--.+.-. +...|+|+.+.+|...||...-.||. |+.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~CpsGCGC 1073 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPSGCGC 1073 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCCCCCc
Confidence 35566665544422 46699999999999999998778885 443
No 135
>KOG2494|consensus
Probab=56.10 E-value=4.6 Score=40.95 Aligned_cols=32 Identities=38% Similarity=0.969 Sum_probs=24.6
Q ss_pred cceeeeeeccCCCccchhhhhhcCCCCCCc-ccccc
Q psy16818 158 ANVRSTVRWDYQPDICKDYKETGFCGFGDS-CKFLH 192 (403)
Q Consensus 158 ~~~r~~~~~dyqpdiCkdYk~tG~CgfGDs-CkflH 192 (403)
.|||.+- | .+-+||.+|. .|-|..||. |||-|
T Consensus 27 ~~~kd~~-w-l~~eVCReF~-rn~C~R~d~~CkfaH 59 (331)
T KOG2494|consen 27 ENVKDTK-W-LTLEVCREFL-RNTCSRGDRECKFAH 59 (331)
T ss_pred ccccccc-h-hHHHHHHHHH-hccccCCCccccccC
Confidence 4676542 3 3457999985 788999999 99999
No 136
>KOG2113|consensus
Probab=55.17 E-value=7 Score=39.58 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=36.0
Q ss_pred CccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..+.|..|..-+..-+..+|+|. ||-.|+. ....+.||+|.....
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccce
Confidence 34689999988877788899998 8999987 445678999976543
No 137
>KOG3899|consensus
Probab=55.01 E-value=6.2 Score=39.57 Aligned_cols=27 Identities=30% Similarity=0.856 Sum_probs=22.0
Q ss_pred cCCcccHHhHHHHhcc-------------CCCccccCccc
Q psy16818 245 CKHYFCTKCALEHFKK-------------TPKCYICQKNT 271 (403)
Q Consensus 245 CgH~FC~~Ci~~~~~~-------------~~~CP~Cr~~~ 271 (403)
|....|.+|+-+|+.. +..||+||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 6677899999999852 34799999987
No 138
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=54.55 E-value=18 Score=35.37 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=35.9
Q ss_pred CccccccccccccCCc-ccccCCcccHHhHHHHhc--cCCCccc--cCccc
Q psy16818 226 LPFKCYICRNSFKDPV-MTKCKHYFCTKCALEHFK--KTPKCYI--CQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~--~~~~CP~--Cr~~~ 271 (403)
+..+|+|-+.++.-|+ .+.|.|.|=.+-|...++ ....||. |.+..
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~ 238 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKE 238 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchhe
Confidence 6789999888887887 458999999999998887 4556885 64433
No 139
>KOG1812|consensus
Probab=54.38 E-value=4.9 Score=41.73 Aligned_cols=43 Identities=23% Similarity=0.629 Sum_probs=31.0
Q ss_pred cccccccccccc-----CCcccccCCcccHHhHHHHhccCCCccccCc
Q psy16818 227 PFKCYICRNSFK-----DPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269 (403)
Q Consensus 227 ~l~C~IC~~~~~-----~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~ 269 (403)
-..|++|...+. +.++-.|||-||..|...|......|..|-.
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~r 353 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECCR 353 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCccc
Confidence 357999988763 2233359999999999998877666665533
No 140
>KOG2979|consensus
Probab=52.66 E-value=15 Score=36.31 Aligned_cols=45 Identities=18% Similarity=0.386 Sum_probs=36.8
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhcc--CCCccccCcc
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKK--TPKCYICQKN 270 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~ 270 (403)
..+.|||=..++.+|++. .|||+|=..-+...... .-.||+-+..
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 668999999999999755 89999999999888775 4569985554
No 141
>PF05458 Siva: Cd27 binding protein (Siva); InterPro: IPR022773 Siva binds to the CD27 cytoplasmic tail. It has a DD homology region, a box-B-like ring finger, and a zinc finger-like domain. Overexpression of Siva in various cell lines induces apoptosis, suggesting an important role for Siva in the CD27-transduced apoptotic pathway []. Siva-1 binds to and inhibits BCL-X(L)-mediated protection against UV radiation-induced apoptosis. Indeed, the unique amphipathic helical region (SAH) present in Siva-1 is required for its binding to BCL-X(L) and sensitising cells to UV radiation. Natural complexes of Siva-1/BCL-X(L) are detected in HUT78 and murine thymocyte, suggesting a potential role for Siva-1 in regulating T cell homeostasis []. This family contains both Siva-1 and the shorter Siva-2 lacking the sequence coded by exon 2. It has been suggested that Siva-2 could regulate the function of Siva-1 [].
Probab=51.34 E-value=62 Score=30.10 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhcccccccCC-CCCccccccccCCcceeeeee
Q psy16818 99 KDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNA-ASGFVRKGPIRAPANVRSTVR 165 (403)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~y~g~~~y~~~~~~~~~~~~~~-~~~~~~~gp~~~~~~~r~~~~ 165 (403)
+-.++||||..++ +++|..+|...+-..+...-+. .++ ..||..+|..++.-..
T Consensus 33 ~~mkeVyEKTkqL-----------LF~GAka~~~~~~~~~~~~~~~p~~~--~~~~~~a~~~~~gQmL 87 (175)
T PF05458_consen 33 RYMKEVYEKTKQL-----------LFRGAKAYMDHIWEEGCAIVDLPEPP--KPGPTEAPSLLRGQML 87 (175)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHhccccccccccccCCCCC--CCCCCCccccccccEE
Confidence 4578999998887 7999999988774333322122 222 3567777776554443
No 142
>PRK11595 DNA utilization protein GntX; Provisional
Probab=50.94 E-value=12 Score=35.61 Aligned_cols=39 Identities=21% Similarity=0.462 Sum_probs=21.3
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKN 270 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~ 270 (403)
|-.|.+|...+..+ .+..|..|...+..-...||.|+.+
T Consensus 5 P~~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCc
Confidence 45688887765321 1235777765543222456666654
No 143
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=47.92 E-value=17 Score=29.57 Aligned_cols=44 Identities=20% Similarity=0.461 Sum_probs=19.1
Q ss_pred ccccccccccc-----CCc--ccccCCcccHHhHHHHhc-cCCCccccCccc
Q psy16818 228 FKCYICRNSFK-----DPV--MTKCKHYFCTKCALEHFK-KTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~-----~Pv--~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~ 271 (403)
-.|.||.+.+- ++. ...|+-..|..|..--.+ .+..||.|+.+.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 47999998763 233 237888899999865444 467899998765
No 144
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.19 E-value=18 Score=29.06 Aligned_cols=42 Identities=21% Similarity=0.555 Sum_probs=27.4
Q ss_pred ccccccccccCC--ccccc--CCcccHHhHHHHhccCCCccccCcccc
Q psy16818 229 KCYICRNSFKDP--VMTKC--KHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~P--v~t~C--gH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.|--|-..+..- -.+-| -|+||..|....+. ..||-|+..+.
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~--g~CPnCGGelv 52 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLH--GLCPNCGGELV 52 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc--CcCCCCCchhh
Confidence 355565554211 12234 47899999987765 56999998874
No 145
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.86 E-value=14 Score=32.00 Aligned_cols=40 Identities=28% Similarity=0.697 Sum_probs=31.4
Q ss_pred ccccccccccCCc--------------ccccCCcccHHhHHHHhccCCCccccC
Q psy16818 229 KCYICRNSFKDPV--------------MTKCKHYFCTKCALEHFKKTPKCYICQ 268 (403)
Q Consensus 229 ~C~IC~~~~~~Pv--------------~t~CgH~FC~~Ci~~~~~~~~~CP~Cr 268 (403)
.|.-|+..|..+. -..|++.||.+|=.=+......||-|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 5999999886541 458999999999766666667799995
No 146
>KOG1595|consensus
Probab=44.02 E-value=12 Score=40.29 Aligned_cols=35 Identities=29% Similarity=0.808 Sum_probs=30.0
Q ss_pred eeeeeccCCCccchhhhhhcCCCCCCccccccCCCc
Q psy16818 161 RSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 161 r~~~~~dyqpdiCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
|-.-++-|.=..|-+|+. |.|.-||+|-|-|++-.
T Consensus 227 RDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfE 261 (528)
T KOG1595|consen 227 RDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFE 261 (528)
T ss_pred CCcccccccCccCccccc-CCCCCCCccccccceeh
Confidence 555678888889999987 99999999999998744
No 147
>KOG0824|consensus
Probab=43.97 E-value=6.8 Score=39.41 Aligned_cols=44 Identities=30% Similarity=0.687 Sum_probs=38.0
Q ss_pred ccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 229 KCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.|.||...|.-|... .|+|-||..|...|......||.|+....
T Consensus 107 ~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 107 ICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred ceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 799999999988766 59999999999999887788888877664
No 148
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=12 Score=41.86 Aligned_cols=43 Identities=28% Similarity=0.534 Sum_probs=28.9
Q ss_pred ccccccccccCC----------cccccCCcc--------------------cHHhHHHHhcc--------CCCccccCcc
Q psy16818 229 KCYICRNSFKDP----------VMTKCKHYF--------------------CTKCALEHFKK--------TPKCYICQKN 270 (403)
Q Consensus 229 ~C~IC~~~~~~P----------v~t~CgH~F--------------------C~~Ci~~~~~~--------~~~CP~Cr~~ 270 (403)
.|.-|+..+.+| ..|.||..| |..|..++... ...||.|+=.
T Consensus 103 ~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CGP~ 182 (750)
T COG0068 103 TCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCGPH 182 (750)
T ss_pred hhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccCCC
Confidence 577777666655 345666543 99999877542 2469999876
Q ss_pred c
Q psy16818 271 T 271 (403)
Q Consensus 271 ~ 271 (403)
+
T Consensus 183 ~ 183 (750)
T COG0068 183 L 183 (750)
T ss_pred e
Confidence 6
No 149
>KOG2807|consensus
Probab=43.26 E-value=12 Score=38.03 Aligned_cols=40 Identities=23% Similarity=0.651 Sum_probs=28.2
Q ss_pred cccccccccc-CCc--ccccCCcccHHhHHHHhccCCCccccC
Q psy16818 229 KCYICRNSFK-DPV--MTKCKHYFCTKCALEHFKKTPKCYICQ 268 (403)
Q Consensus 229 ~C~IC~~~~~-~Pv--~t~CgH~FC~~Ci~~~~~~~~~CP~Cr 268 (403)
.|..|..... .+. .-.|.++||.+|=.=....-..||-|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 4999955443 332 348999999999655444556799996
No 150
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=42.83 E-value=5.1 Score=24.92 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=5.7
Q ss_pred cCCCccccCcc
Q psy16818 260 KTPKCYICQKN 270 (403)
Q Consensus 260 ~~~~CP~Cr~~ 270 (403)
...-||.|+.+
T Consensus 12 ~~~fC~~CG~~ 22 (23)
T PF13240_consen 12 DAKFCPNCGTP 22 (23)
T ss_pred cCcchhhhCCc
Confidence 34446666554
No 151
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=42.71 E-value=14 Score=26.97 Aligned_cols=31 Identities=26% Similarity=0.690 Sum_probs=22.9
Q ss_pred ccccccccccC----CcccccCCcccHHhHHHHhc
Q psy16818 229 KCYICRNSFKD----PVMTKCKHYFCTKCALEHFK 259 (403)
Q Consensus 229 ~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~ 259 (403)
.|.+|...|.. .....||+.||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 58899877642 23458999999999876543
No 152
>KOG2135|consensus
Probab=42.58 E-value=9.4 Score=40.57 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=27.4
Q ss_pred CCCccchhhhhhcCCCCCCccccccCCCccc
Q psy16818 168 YQPDICKDYKETGFCGFGDSCKFLHDRTDYK 198 (403)
Q Consensus 168 yqpdiCkdYk~tG~CgfGDsCkflHdr~dy~ 198 (403)
|-|.+||+|-++|+|-.|+.|+|.|.+....
T Consensus 210 ~s~~r~k~fee~g~~~r~el~p~~hg~~~vv 240 (526)
T KOG2135|consen 210 NSENRRKFFEEFGVLERGELCPTHHGCVPVV 240 (526)
T ss_pred ccHHhhhhhHhhceeeeccccccccccceeE
Confidence 5678999999999999999999999876633
No 153
>KOG4718|consensus
Probab=41.84 E-value=13 Score=35.70 Aligned_cols=43 Identities=14% Similarity=0.406 Sum_probs=35.2
Q ss_pred cccccccccccCCc-ccccCCcccHHhHHHHhccCCCccccCcc
Q psy16818 228 FKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYICQKN 270 (403)
Q Consensus 228 l~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~ 270 (403)
..|.+|..++..-+ .-.|+--+...|+...++..+.||.|+--
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcc
Confidence 36999999886554 45788888999999999988899999643
No 154
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=40.84 E-value=93 Score=22.19 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=27.4
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16818 366 TEDTIKENLSKQNVDKLGEKLEAYLKNIRDQLEK 399 (403)
Q Consensus 366 ~~~qi~e~l~~~~v~el~E~~~~~i~~~~~~~~~ 399 (403)
..+.++.++..+-.++|..+..++|.-++++|.+
T Consensus 4 dle~~KqEIL~EvrkEl~K~K~EIIeA~~~eL~r 37 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKVKEEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777889999988899999998875
No 155
>KOG0289|consensus
Probab=40.82 E-value=1.4e+02 Score=31.92 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=39.9
Q ss_pred cccccccccccCCcccc-cCCcccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
+.|.|-.+....||+.+ -||.|=.+-|.++......||+=+.++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pL 45 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPL 45 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcC
Confidence 36999999999999774 899999999999999999999998887
No 156
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=40.29 E-value=15 Score=27.10 Aligned_cols=37 Identities=27% Similarity=0.670 Sum_probs=23.1
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhcc--CCCccccCcc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK--TPKCYICQKN 270 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~ 270 (403)
.|.||.|...|... .++..|...+... ...||+|...
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 47899999954322 2445555555442 3469999763
No 157
>KOG2202|consensus
Probab=40.08 E-value=11 Score=37.13 Aligned_cols=27 Identities=33% Similarity=0.794 Sum_probs=23.3
Q ss_pred cchhhhhhcCCCCCCccccccCCCccc
Q psy16818 172 ICKDYKETGFCGFGDSCKFLHDRTDYK 198 (403)
Q Consensus 172 iCkdYk~tG~CgfGDsCkflHdr~dy~ 198 (403)
-|+.|.++|-|.+||-|.=+|-...+.
T Consensus 17 ~c~fy~k~gacR~gdrcsR~h~kpt~s 43 (260)
T KOG2202|consen 17 NCSFYFKIGACRHGDRCSRLHEKPTFS 43 (260)
T ss_pred ccchHHhhcccccccHHHHhhcccccc
Confidence 599999999999999999999765544
No 158
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=40.04 E-value=20 Score=30.47 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=20.2
Q ss_pred CCcccHHhHHHHhccC---------CCccccCccc
Q psy16818 246 KHYFCTKCALEHFKKT---------PKCYICQKNT 271 (403)
Q Consensus 246 gH~FC~~Ci~~~~~~~---------~~CP~Cr~~~ 271 (403)
.-.||..||..++... -.||.|+..-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 6679999999988632 2599998855
No 159
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=39.16 E-value=19 Score=42.64 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=38.7
Q ss_pred ccccccccccccCCcccccCCc-----ccHHhHHHHhcc---CCCccccCccccc----cccchHHHHHHHHHH
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHY-----FCTKCALEHFKK---TPKCYICQKNTFG----EFRTAEKIVQKLKDA 288 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~-----FC~~Ci~~~~~~---~~~CP~Cr~~~~~----~~~~~~~Li~~l~~~ 288 (403)
.+.|+-|........+-.||+. +|..|-...-.. ...||.|+.++.. .++....+...++..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHh
Confidence 3799999986555556679844 599996543221 2369999988843 233334444444443
No 160
>KOG3842|consensus
Probab=37.84 E-value=33 Score=34.97 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=20.8
Q ss_pred ccccCCcccHHhHHHHhcc---------CCCccccCccccc
Q psy16818 242 MTKCKHYFCTKCALEHFKK---------TPKCYICQKNTFG 273 (403)
Q Consensus 242 ~t~CgH~FC~~Ci~~~~~~---------~~~CP~Cr~~~~~ 273 (403)
..||||..-+.-..-|.+- ...||.|...+.+
T Consensus 375 F~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 375 FNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4599996555555545431 2469999888743
No 161
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=37.42 E-value=11 Score=28.79 Aligned_cols=31 Identities=23% Similarity=0.630 Sum_probs=16.2
Q ss_pred cccccccccccCC----cccccCCcccHHhHHHHh
Q psy16818 228 FKCYICRNSFKDP----VMTKCKHYFCTKCALEHF 258 (403)
Q Consensus 228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~~ 258 (403)
-.|.+|...|.-- .--.||+.||..|.....
T Consensus 10 ~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 10 SNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3699999999421 133899999999986543
No 162
>KOG1040|consensus
Probab=36.04 E-value=20 Score=36.59 Aligned_cols=27 Identities=37% Similarity=0.880 Sum_probs=21.4
Q ss_pred cCCCccchhhhhhcCCCCCCccccccCC
Q psy16818 167 DYQPDICKDYKETGFCGFGDSCKFLHDR 194 (403)
Q Consensus 167 dyqpdiCkdYk~tG~CgfGDsCkflHdr 194 (403)
-+.-.|||+| ..|.|.-||.|-|+|..
T Consensus 74 ~~~~~vcK~~-l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 74 SRGKVVCKHW-LRGLCKKGDQCEFLHEY 100 (325)
T ss_pred cCCceeehhh-hhhhhhccCcCcchhhh
Confidence 3444789755 58999999999999963
No 163
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=35.31 E-value=20 Score=28.31 Aligned_cols=12 Identities=25% Similarity=0.874 Sum_probs=9.0
Q ss_pred cccHHhHHHHhc
Q psy16818 248 YFCTKCALEHFK 259 (403)
Q Consensus 248 ~FC~~Ci~~~~~ 259 (403)
.||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 164
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.07 E-value=31 Score=26.42 Aligned_cols=42 Identities=21% Similarity=0.527 Sum_probs=28.6
Q ss_pred ccccccccccCC--cccccC--CcccHHhHHHHhccCCCccccCcccc
Q psy16818 229 KCYICRNSFKDP--VMTKCK--HYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~P--v~t~Cg--H~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.|-.|...+... -..-|. .+||..|....+. ..||-|+..+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~--~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN--GVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc--CcCcCCCCccc
Confidence 466777666422 233454 4699999998864 56999988763
No 165
>KOG3053|consensus
Probab=33.39 E-value=33 Score=34.02 Aligned_cols=52 Identities=21% Similarity=0.465 Sum_probs=36.8
Q ss_pred CccccccccccccC-C---cccccC-----CcccHHhHHHHhccC--------CCccccCccccccccc
Q psy16818 226 LPFKCYICRNSFKD-P---VMTKCK-----HYFCTKCALEHFKKT--------PKCYICQKNTFGEFRT 277 (403)
Q Consensus 226 ~~l~C~IC~~~~~~-P---v~t~Cg-----H~FC~~Ci~~~~~~~--------~~CP~Cr~~~~~~~~~ 277 (403)
.+..|-||+..=.+ + -+-||. |.-+.+|+..|.... -.||.|+....-+|+.
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~ 87 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQ 87 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccc
Confidence 55789999976543 2 233552 556899999998632 2599999988777765
No 166
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=32.74 E-value=22 Score=22.40 Aligned_cols=21 Identities=43% Similarity=1.032 Sum_probs=13.3
Q ss_pred cchhhhhhc-CCCCCCccccccCC
Q psy16818 172 ICKDYKETG-FCGFGDSCKFLHDR 194 (403)
Q Consensus 172 iCkdYk~tG-~CgfGDsCkflHdr 194 (403)
+| +|.-+| .|- -++|.|.|-|
T Consensus 2 lC-~yEl~Gg~Cn-d~~C~~QHfr 23 (23)
T PF10650_consen 2 LC-PYELTGGVCN-DPDCEFQHFR 23 (23)
T ss_pred CC-ccccCCCeeC-CCCCCccccC
Confidence 35 455555 664 4679999854
No 167
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.11 E-value=27 Score=33.84 Aligned_cols=25 Identities=20% Similarity=0.644 Sum_probs=21.6
Q ss_pred cccHHhHHHHhccCCCccccCcccc
Q psy16818 248 YFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 248 ~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
--|.+|-....++.+.||+|...+-
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccccc
Confidence 3599999999999999999988763
No 169
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=31.79 E-value=32 Score=26.07 Aligned_cols=39 Identities=23% Similarity=0.629 Sum_probs=28.4
Q ss_pred cccccccccc--cCCccc--ccCCcccHHhHHHHhccCCCccc--cCcc
Q psy16818 228 FKCYICRNSF--KDPVMT--KCKHYFCTKCALEHFKKTPKCYI--CQKN 270 (403)
Q Consensus 228 l~C~IC~~~~--~~Pv~t--~CgH~FC~~Ci~~~~~~~~~CP~--Cr~~ 270 (403)
-.|++|.+.| .+.++. .||-.+...|+... ..|-. |...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~----g~C~~~~c~~~ 50 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA----GGCINYSCGTG 50 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhC----CceEeccCCCC
Confidence 4799999999 455544 79999999997543 44655 6554
No 170
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=31.75 E-value=23 Score=35.92 Aligned_cols=41 Identities=27% Similarity=0.805 Sum_probs=27.2
Q ss_pred ccccccccccCCcc--------------cccCCcccHHhHHHHhccCCCccccCc
Q psy16818 229 KCYICRNSFKDPVM--------------TKCKHYFCTKCALEHFKKTPKCYICQK 269 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~--------------t~CgH~FC~~Ci~~~~~~~~~CP~Cr~ 269 (403)
-|.+|+..|..|-+ -.|+..||.+|-.=.......||-|..
T Consensus 364 ~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gCe~ 418 (421)
T COG5151 364 HCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGCEL 418 (421)
T ss_pred cceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCCcC
Confidence 38888888865421 257888888886544444556888854
No 171
>KOG3799|consensus
Probab=31.50 E-value=24 Score=31.73 Aligned_cols=34 Identities=26% Similarity=0.620 Sum_probs=22.3
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
-.|.||...-. .-.||| -|.+|-.+ .|..|+..+
T Consensus 66 atC~IC~KTKF---ADG~GH-~C~YCq~r------~CARCGGrv 99 (169)
T KOG3799|consen 66 ATCGICHKTKF---ADGCGH-NCSYCQTR------FCARCGGRV 99 (169)
T ss_pred cchhhhhhccc---ccccCc-ccchhhhh------HHHhcCCee
Confidence 47999997532 236888 57777654 366666555
No 172
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.20 E-value=33 Score=22.90 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=6.9
Q ss_pred CCCccccCcc
Q psy16818 261 TPKCYICQKN 270 (403)
Q Consensus 261 ~~~CP~Cr~~ 270 (403)
...||+|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 3468888764
No 173
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.48 E-value=17 Score=38.00 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=0.0
Q ss_pred CccccccccccccCC--------------cccccCCcccHHhHHHHhc------cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDP--------------VMTKCKHYFCTKCALEHFK------KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P--------------v~t~CgH~FC~~Ci~~~~~------~~~~CP~Cr~~~~ 272 (403)
....||+=+..+.-| |-+.|||++-.. .|-. ....||+|+..-.
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 345788877665433 567999998775 4432 2457999988654
No 174
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.47 E-value=11 Score=26.56 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=14.9
Q ss_pred cccCCcccHHhHHHHhccCCCccccCc
Q psy16818 243 TKCKHYFCTKCALEHFKKTPKCYICQK 269 (403)
Q Consensus 243 t~CgH~FC~~Ci~~~~~~~~~CP~Cr~ 269 (403)
..|||.|-...-..- .....||.|+.
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 367777755332111 23457999988
No 175
>PF14353 CpXC: CpXC protein
Probab=30.12 E-value=42 Score=28.92 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=25.3
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhcc---CCCccccCccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK---TPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~ 271 (403)
+.||-|...|.-.+.+.-.-..=..-....+.. ...||.|+..+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 578888888865544333322223333333332 34699999887
No 176
>KOG3476|consensus
Probab=29.71 E-value=12 Score=31.08 Aligned_cols=34 Identities=32% Similarity=0.875 Sum_probs=27.0
Q ss_pred ccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
.|-||...+..| |..||..|+.. ..-|.+|++.+
T Consensus 56 kC~iCk~~vHQ~-----GshYC~tCAY~----KgiCAMCGKki 89 (100)
T KOG3476|consen 56 KCRICKQLVHQP-----GSHYCQTCAYK----KGICAMCGKKI 89 (100)
T ss_pred hhHHHHHHhcCC-----cchhHhHhhhh----hhHHHHhhhHh
Confidence 699999988877 65699999854 24599998876
No 177
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=29.67 E-value=18 Score=37.84 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=0.0
Q ss_pred cccccccccccc--------C---------C--cccccCCcccHHhHHHHhcc---------CCCccccCcccccc
Q psy16818 227 PFKCYICRNSFK--------D---------P--VMTKCKHYFCTKCALEHFKK---------TPKCYICQKNTFGE 274 (403)
Q Consensus 227 ~l~C~IC~~~~~--------~---------P--v~t~CgH~FC~~Ci~~~~~~---------~~~CP~Cr~~~~~~ 274 (403)
...|++|+..-. + | +..||||.--+..+.-|.+- ...||.|-.++.+.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 457999996420 1 2 34499998878887777541 24699999888643
No 178
>KOG0269|consensus
Probab=28.86 E-value=41 Score=37.96 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=32.5
Q ss_pred ccccccccccCCc--ccccCCcccHHhHHHHhccCCCccc--cCcccc
Q psy16818 229 KCYICRNSFKDPV--MTKCKHYFCTKCALEHFKKTPKCYI--CQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~Pv--~t~CgH~FC~~Ci~~~~~~~~~CP~--Cr~~~~ 272 (403)
.|.+|...+..-. .-.|||.-+.+|+..|+.+...||. |.....
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCH 828 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCcccc
Confidence 5777776664322 2269999999999999999888887 766543
No 179
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.86 E-value=15 Score=23.64 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=4.7
Q ss_pred cccccccc
Q psy16818 230 CYICRNSF 237 (403)
Q Consensus 230 C~IC~~~~ 237 (403)
||-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 66666555
No 180
>KOG1814|consensus
Probab=28.70 E-value=24 Score=36.99 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=27.1
Q ss_pred CccccccccccccCC------cccccCCcccHHhHHHHhc
Q psy16818 226 LPFKCYICRNSFKDP------VMTKCKHYFCTKCALEHFK 259 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P------v~t~CgH~FC~~Ci~~~~~ 259 (403)
..-.||-|.-++..+ ..+.|+|+||+-|......
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~~ 406 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLYP 406 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhcCC
Confidence 445899999988644 5679999999999877663
No 181
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=28.36 E-value=48 Score=37.80 Aligned_cols=44 Identities=36% Similarity=0.794 Sum_probs=34.6
Q ss_pred ccccccccc--ccCCcccccCC-----cccHHhHHHHhcc--CCCccccCccc
Q psy16818 228 FKCYICRNS--FKDPVMTKCKH-----YFCTKCALEHFKK--TPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~--~~~Pv~t~CgH-----~FC~~Ci~~~~~~--~~~CP~Cr~~~ 271 (403)
..|-||+.. -.+|..-||+. |.+..|+.+|+.. ...|-+|..++
T Consensus 13 ~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 13 RSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred hhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 469999854 35787778764 4689999999984 46799999887
No 182
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=28.26 E-value=13 Score=23.51 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=5.1
Q ss_pred CCCccccCcc
Q psy16818 261 TPKCYICQKN 270 (403)
Q Consensus 261 ~~~CP~Cr~~ 270 (403)
..-||.|+.+
T Consensus 16 ~~fC~~CG~~ 25 (26)
T PF13248_consen 16 AKFCPNCGAK 25 (26)
T ss_pred cccChhhCCC
Confidence 3446666543
No 183
>KOG4451|consensus
Probab=27.87 E-value=33 Score=33.41 Aligned_cols=25 Identities=20% Similarity=0.657 Sum_probs=21.4
Q ss_pred cccHHhHHHHhccCCCccccCcccc
Q psy16818 248 YFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 248 ~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
--|.+|-.+..+..+.||+|...+.
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccc
Confidence 4689999999999999999988764
No 184
>KOG2231|consensus
Probab=27.59 E-value=39 Score=37.69 Aligned_cols=43 Identities=23% Similarity=0.542 Sum_probs=34.9
Q ss_pred ccccccccccCCcccccCC-cccHHhHHHHhc--c----CCCccccCccc
Q psy16818 229 KCYICRNSFKDPVMTKCKH-YFCTKCALEHFK--K----TPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH-~FC~~Ci~~~~~--~----~~~CP~Cr~~~ 271 (403)
.|.||-..+..+..-.||| .-|..|..+... . ...||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 4999999888888889999 799999988754 2 34579999966
No 185
>KOG4185|consensus
Probab=26.74 E-value=14 Score=36.27 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=34.1
Q ss_pred ccccccccccc------CCcccc--------cCCcccHHhHHHHhcc-CCCccccCcc
Q psy16818 228 FKCYICRNSFK------DPVMTK--------CKHYFCTKCALEHFKK-TPKCYICQKN 270 (403)
Q Consensus 228 l~C~IC~~~~~------~Pv~t~--------CgH~FC~~Ci~~~~~~-~~~CP~Cr~~ 270 (403)
..|.||...+. .|.++. |||..|..|+...... ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 56999998875 355666 9999999999888653 3689999874
No 186
>KOG0796|consensus
Probab=26.58 E-value=33 Score=34.82 Aligned_cols=41 Identities=34% Similarity=0.778 Sum_probs=24.6
Q ss_pred cccccCCcceeeeeeccCCCccchhhhhhcCCCCC---------CccccccC
Q psy16818 151 KGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFG---------DSCKFLHD 193 (403)
Q Consensus 151 ~gp~~~~~~~r~~~~~dyqpdiCkdYk~tG~CgfG---------DsCkflHd 193 (403)
.||-|.+.-=+.++.| +-|+||++| ..|||.+- ..|.-+|+
T Consensus 13 MGs~r~~~~~~~~v~~-~D~~VC~~f-Lvg~CPHDlF~nTk~dlg~C~kvHd 62 (319)
T KOG0796|consen 13 MGSNRDGDETRQRVKF-DDPDVCKSF-LVGFCPHDLFQNTKMDLGPCPKVHD 62 (319)
T ss_pred hCCCcCCCcccCCCCC-CchhHHHHH-HhCCCcHHHhhhhhcccCcccchhh
Confidence 3544443222333334 479999766 58999864 46666665
No 187
>KOG1356|consensus
Probab=25.87 E-value=22 Score=40.45 Aligned_cols=33 Identities=15% Similarity=0.452 Sum_probs=27.5
Q ss_pred CccccccccccccCC--cccccCCcccHHhHHHHh
Q psy16818 226 LPFKCYICRNSFKDP--VMTKCKHYFCTKCALEHF 258 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P--v~t~CgH~FC~~Ci~~~~ 258 (403)
..-.|..|...+.+- +...|++.+|..|+..|+
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 455799999887764 456899999999999996
No 188
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=25.56 E-value=16 Score=27.03 Aligned_cols=16 Identities=31% Similarity=0.878 Sum_probs=13.4
Q ss_pred ccCCcccHHhHHHHhc
Q psy16818 244 KCKHYFCTKCALEHFK 259 (403)
Q Consensus 244 ~CgH~FC~~Ci~~~~~ 259 (403)
.|+|.||..|...|..
T Consensus 45 ~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 45 KCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCeECCCCCCcCCC
Confidence 6899999999887754
No 189
>KOG2462|consensus
Probab=25.36 E-value=24 Score=35.09 Aligned_cols=10 Identities=30% Similarity=0.457 Sum_probs=6.0
Q ss_pred CCccccCccc
Q psy16818 262 PKCYICQKNT 271 (403)
Q Consensus 262 ~~CP~Cr~~~ 271 (403)
+.||.|++.|
T Consensus 216 F~C~hC~kAF 225 (279)
T KOG2462|consen 216 FSCPHCGKAF 225 (279)
T ss_pred ccCCcccchh
Confidence 3566666655
No 190
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.84 E-value=37 Score=30.16 Aligned_cols=23 Identities=35% Similarity=0.867 Sum_probs=15.1
Q ss_pred cccHHhHHHHhccCCCccccCccccc
Q psy16818 248 YFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 248 ~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
.||+.|-.... ..||.|..++.+
T Consensus 29 afcskcgeati---~qcp~csasirg 51 (160)
T COG4306 29 AFCSKCGEATI---TQCPICSASIRG 51 (160)
T ss_pred HHHhhhchHHH---hcCCccCCcccc
Confidence 47777765433 358888887744
No 191
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.11 E-value=39 Score=31.40 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=22.3
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
.-+.|+.|...|.- . ..+...+.||.|+.++...
T Consensus 116 ~~Y~Cp~C~~rytf------------~---eA~~~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 116 MFFFCPNCHIRFTF------------D---EAMEYGFRCPQCGEMLEEY 149 (178)
T ss_pred CEEECCCCCcEEeH------------H---HHhhcCCcCCCCCCCCeec
Confidence 56788877765531 1 2223468899999988654
No 192
>KOG0827|consensus
Probab=23.85 E-value=10 Score=39.49 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=38.5
Q ss_pred CccccccccccccCC----cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDP----VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
+--.|.||...+..- -.+.|||.+...|+.+|+.....||.|+..+.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 334699999887532 35689999999999999998888999988773
No 193
>PLN02189 cellulose synthase
Probab=23.60 E-value=50 Score=38.62 Aligned_cols=44 Identities=23% Similarity=0.498 Sum_probs=32.1
Q ss_pred cccccccccc-----CCc--ccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 229 KCYICRNSFK-----DPV--MTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~-----~Pv--~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
.|.||.+.+- +|. .-.|+-.-|..|..--.+ .+..||.|+....
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 7999999863 232 336888889999954333 4678999998874
No 194
>KOG1866|consensus
Probab=23.51 E-value=27 Score=39.37 Aligned_cols=65 Identities=23% Similarity=0.419 Sum_probs=39.6
Q ss_pred hhhhhhhhhhhcccccccCCCCCccccccccCCcceeeeeeccCCCccchhhhhhcCCCCCCccccccCCCccccCc
Q psy16818 125 RGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGW 201 (403)
Q Consensus 125 ~g~~~y~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~r~~~~~dyqpdiCkdYk~tG~CgfGDsCkflHdr~dy~~gw 201 (403)
|=-|+|.-|+++.++.- ...-|++ +...+.+| .|.|--+=.-.----.-++|||||+|+.|...+
T Consensus 422 R~WNAYmlFYer~~d~p-------~~~~p~~----~~~~l~~~-s~ei~~~~~~i~r~vrd~n~kFm~nRd~~S~d~ 486 (944)
T KOG1866|consen 422 RWWNAYMLFYERMDDIP-------TDDEPIR----EILSLTID-SPEIIPMSSPIERSVRDQNVKFMHNRDQYSFDY 486 (944)
T ss_pred HhhhhHHHHHHHhcCCC-------ccccccc----cccccccC-CcccCCCchHHHHHHHHhhhhhhcccchhhHHH
Confidence 44688999999988751 1344555 55555666 665543222211122458999999998775443
No 195
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=23.06 E-value=44 Score=23.32 Aligned_cols=22 Identities=27% Similarity=0.768 Sum_probs=12.6
Q ss_pred cccccccccC-Ccccc-cCCcccH
Q psy16818 230 CYICRNSFKD-PVMTK-CKHYFCT 251 (403)
Q Consensus 230 C~IC~~~~~~-Pv~t~-CgH~FC~ 251 (403)
|.+|.....- |..=. |+.+||.
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCcccccCeECCccCCcccc
Confidence 4556654443 54444 7777776
No 196
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.78 E-value=38 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=10.1
Q ss_pred CccccCccccccccchHHHHHHHH
Q psy16818 263 KCYICQKNTFGEFRTAEKIVQKLK 286 (403)
Q Consensus 263 ~CP~Cr~~~~~~~~~~~~Li~~l~ 286 (403)
.||+|+.++...-. ..|+..+.
T Consensus 22 ~CPlC~r~l~~e~~--~~li~~~~ 43 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR--QELIKKYK 43 (54)
T ss_dssp E-TTT--EE-HHHH--HHHHHHHH
T ss_pred cCCCCCCCCCHHHH--HHHHHHHH
Confidence 79999998753211 44554444
No 197
>PLN02436 cellulose synthase A
Probab=22.17 E-value=51 Score=38.72 Aligned_cols=44 Identities=20% Similarity=0.577 Sum_probs=32.1
Q ss_pred cccccccccc-----CCc--ccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 229 KCYICRNSFK-----DPV--MTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~-----~Pv--~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
.|.||.+.+- +|. .-.|+-.-|..|..--.+ .+..||.|+....
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 7999999873 232 236888899999954333 4678999998874
No 198
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=22.16 E-value=46 Score=37.51 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=17.6
Q ss_pred ccHHhHHHHhcc--------CCCccccCccc
Q psy16818 249 FCTKCALEHFKK--------TPKCYICQKNT 271 (403)
Q Consensus 249 FC~~Ci~~~~~~--------~~~CP~Cr~~~ 271 (403)
.|..|..++... ...||.|+=.+
T Consensus 120 ~C~~C~~ey~~p~~rr~h~~~~~C~~Cgp~l 150 (711)
T TIGR00143 120 LCPDCAKEYKDPLDRRFHAQPIACPRCGPQL 150 (711)
T ss_pred CCHHHHHHhcCCccccCCCCCccCCCCCcEE
Confidence 599999997542 23699998777
No 199
>KOG2202|consensus
Probab=22.08 E-value=38 Score=33.39 Aligned_cols=30 Identities=30% Similarity=0.758 Sum_probs=24.5
Q ss_pred eeccCCCccchhhhhhcCCCCCCccccccCC
Q psy16818 164 VRWDYQPDICKDYKETGFCGFGDSCKFLHDR 194 (403)
Q Consensus 164 ~~~dyqpdiCkdYk~tG~CgfGDsCkflHdr 194 (403)
-.+|+.--+|-.|-.| -|.+|..|-|+|-+
T Consensus 146 pvT~~rea~C~~~e~~-~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 146 PVTDFREAICGQFERT-ECSRGGACNFMHVK 175 (260)
T ss_pred CcCchhhhhhcccccc-cCCCCCcCcchhhh
Confidence 3456677799888766 89999999999965
No 200
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.56 E-value=36 Score=29.23 Aligned_cols=42 Identities=36% Similarity=0.733 Sum_probs=25.7
Q ss_pred ccccccccccc---CC--cccccCCcccHHhHHHHhc-cCCCccccCc
Q psy16818 228 FKCYICRNSFK---DP--VMTKCKHYFCTKCALEHFK-KTPKCYICQK 269 (403)
Q Consensus 228 l~C~IC~~~~~---~P--v~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~ 269 (403)
-.|.+|...|. ++ +...|+|.+|..|-..... ..-.|.+|.+
T Consensus 55 ~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 55 RHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp SB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred cchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 47999988763 22 3458999999999654111 1224888855
No 201
>PRK03918 chromosome segregation protein; Provisional
Probab=21.54 E-value=1e+03 Score=26.87 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=9.4
Q ss_pred CCccccCccccc
Q psy16818 262 PKCYICQKNTFG 273 (403)
Q Consensus 262 ~~CP~Cr~~~~~ 273 (403)
+.||+|+.++..
T Consensus 436 ~~Cp~c~~~L~~ 447 (880)
T PRK03918 436 GKCPVCGRELTE 447 (880)
T ss_pred CCCCCCCCcCCc
Confidence 569999998754
No 202
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.31 E-value=51 Score=30.23 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=18.0
Q ss_pred CCcccHHhHHHHhccCCCccccCccccc
Q psy16818 246 KHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 246 gH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
.+.||..|-.+.. ..||.|..++.|
T Consensus 27 ~~~fC~kCG~~tI---~~Cp~C~~~IrG 51 (158)
T PF10083_consen 27 REKFCSKCGAKTI---TSCPNCSTPIRG 51 (158)
T ss_pred HHHHHHHhhHHHH---HHCcCCCCCCCC
Confidence 4568888876654 358888888854
No 203
>KOG1040|consensus
Probab=21.11 E-value=45 Score=34.10 Aligned_cols=24 Identities=33% Similarity=0.711 Sum_probs=21.8
Q ss_pred cchhhhhhcCCCCCCccccccCCC
Q psy16818 172 ICKDYKETGFCGFGDSCKFLHDRT 195 (403)
Q Consensus 172 iCkdYk~tG~CgfGDsCkflHdr~ 195 (403)
.|+.|...|+|.-|..|.|+|...
T Consensus 107 ec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 107 ECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred cccccccccccccccCCcccCCCh
Confidence 688899999999999999999874
No 204
>KOG1829|consensus
Probab=21.11 E-value=37 Score=37.28 Aligned_cols=39 Identities=31% Similarity=0.721 Sum_probs=25.0
Q ss_pred Ccccccccccc-ccCCc-------ccccCCcccHHhHHHHhccCCCcccc
Q psy16818 226 LPFKCYICRNS-FKDPV-------MTKCKHYFCTKCALEHFKKTPKCYIC 267 (403)
Q Consensus 226 ~~l~C~IC~~~-~~~Pv-------~t~CgH~FC~~Ci~~~~~~~~~CP~C 267 (403)
.-|.|.+|... +.-|. ...|++.|+..|+.. .++.||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 34577777432 11121 347999999999754 44559999
No 205
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=21.09 E-value=32 Score=39.29 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=0.0
Q ss_pred CccccccccccccCCcccccC-----CcccHHhHHHHhccCCCccccCccccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCK-----HYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~Cg-----H~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
-...|+-|...-....+-.|| +++|..|-...- ...||.|+..+..
T Consensus 654 ~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~--~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 654 GRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVE--EDECPKCGRETTS 704 (900)
T ss_dssp -----------------------------------------------------
T ss_pred ecccCcccCCcchhhcCcccCCccccceeccccccccC--ccccccccccCcc
Confidence 346899998876555566787 358999986543 3479999988843
No 206
>KOG2333|consensus
Probab=20.72 E-value=36 Score=36.67 Aligned_cols=22 Identities=36% Similarity=0.994 Sum_probs=19.6
Q ss_pred cchhhhhhcCCCCCCccccccC
Q psy16818 172 ICKDYKETGFCGFGDSCKFLHD 193 (403)
Q Consensus 172 iCkdYk~tG~CgfGDsCkflHd 193 (403)
-|--|-.-|+|.||-+|+|+-.
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~a 137 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGA 137 (614)
T ss_pred ccceeeccccCCccceeehhhc
Confidence 4888899999999999999964
No 207
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.45 E-value=60 Score=38.16 Aligned_cols=44 Identities=23% Similarity=0.530 Sum_probs=32.2
Q ss_pred cccccccccc-----CCc--ccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 229 KCYICRNSFK-----DPV--MTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~-----~Pv--~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
.|.||.+.+- +|. .-.|+-.-|..|..-=.+ .+..||.|+....
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 7999999863 232 337888899999843333 4678999998873
No 208
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=45 Score=28.00 Aligned_cols=13 Identities=23% Similarity=0.830 Sum_probs=11.5
Q ss_pred cccHHhHHHHhcc
Q psy16818 248 YFCTKCALEHFKK 260 (403)
Q Consensus 248 ~FC~~Ci~~~~~~ 260 (403)
.||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999974
No 209
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.32 E-value=40 Score=30.13 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=14.7
Q ss_pred ccccccccCCcccccCCcccHH
Q psy16818 231 YICRNSFKDPVMTKCKHYFCTK 252 (403)
Q Consensus 231 ~IC~~~~~~Pv~t~CgH~FC~~ 252 (403)
.||...-..-+.-.|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 4666654443455899999975
No 210
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.06 E-value=52 Score=33.01 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=31.8
Q ss_pred cccccccccccCCccc----ccCCc--ccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSFKDPVMT----KCKHY--FCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t----~CgH~--FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
-.||+|.......++. .=|-. -|.-|...|..-..+|-.|...-
T Consensus 186 ~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~ 235 (308)
T COG3058 186 QYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSK 235 (308)
T ss_pred ccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccccC
Confidence 4799999977654322 23433 39999999987767899997754
Done!