Query psy16818
Match_columns 403
No_of_seqs 434 out of 1824
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:52:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2csy_A Zinc finger protein 183 99.5 2.1E-14 7.3E-19 113.6 5.1 62 226-287 14-75 (81)
2 3ztg_A E3 ubiquitin-protein li 99.3 2.5E-12 8.7E-17 103.7 7.0 64 226-289 12-80 (92)
3 1t1h_A Gspef-atpub14, armadill 99.3 2E-12 6.7E-17 101.2 3.9 47 226-272 7-54 (78)
4 2kr4_A Ubiquitin conjugation f 99.3 5.2E-12 1.8E-16 101.6 5.9 63 226-288 13-76 (85)
5 3fl2_A E3 ubiquitin-protein li 99.2 4.8E-12 1.6E-16 107.9 5.4 61 227-287 52-115 (124)
6 4ayc_A E3 ubiquitin-protein li 99.2 2.4E-12 8.3E-17 112.0 3.3 46 228-273 54-99 (138)
7 2kre_A Ubiquitin conjugation f 99.2 1.2E-11 4.1E-16 102.7 7.2 63 226-288 28-91 (100)
8 2y43_A E3 ubiquitin-protein li 99.2 1.2E-11 4.1E-16 101.3 5.8 62 227-288 22-85 (99)
9 3lrq_A E3 ubiquitin-protein li 99.2 1E-11 3.4E-16 102.5 5.0 46 227-272 22-69 (100)
10 1wgm_A Ubiquitin conjugation f 99.2 1.5E-11 5E-16 101.8 5.8 63 226-288 21-85 (98)
11 2d8t_A Dactylidin, ring finger 99.2 9.6E-12 3.3E-16 95.9 4.0 47 226-272 14-60 (71)
12 2yur_A Retinoblastoma-binding 99.2 1.3E-11 4.3E-16 96.2 4.4 46 226-271 14-62 (74)
13 2ckl_A Polycomb group ring fin 99.2 1.5E-11 5.2E-16 102.3 5.0 48 226-273 14-62 (108)
14 2ecy_A TNF receptor-associated 99.2 1.2E-11 4.3E-16 93.8 4.0 47 226-272 14-61 (66)
15 2djb_A Polycomb group ring fin 99.2 1.9E-11 6.4E-16 94.5 4.7 47 226-272 14-61 (72)
16 2ysl_A Tripartite motif-contai 99.2 2.8E-11 9.5E-16 93.2 5.4 47 226-272 19-68 (73)
17 1z6u_A NP95-like ring finger p 99.2 2.2E-11 7.6E-16 107.9 5.5 61 227-287 78-141 (150)
18 3l11_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 103.5 3.4 46 227-272 15-61 (115)
19 2egp_A Tripartite motif-contai 99.1 1.1E-11 3.9E-16 96.7 2.0 47 226-272 11-64 (79)
20 2ysj_A Tripartite motif-contai 99.1 5.7E-11 2E-15 89.2 5.7 42 226-267 19-63 (63)
21 2kiz_A E3 ubiquitin-protein li 99.1 4.9E-11 1.7E-15 91.1 5.3 51 226-276 13-66 (69)
22 2ecw_A Tripartite motif-contai 99.1 3E-11 1E-15 95.0 3.9 47 226-272 18-70 (85)
23 2yu4_A E3 SUMO-protein ligase 99.1 3E-11 1E-15 98.8 3.7 63 226-288 6-79 (94)
24 1jm7_B BARD1, BRCA1-associated 99.1 6E-11 2E-15 100.3 5.3 59 227-287 22-82 (117)
25 2ea6_A Ring finger protein 4; 99.1 3E-11 1E-15 91.6 3.1 47 226-272 14-67 (69)
26 3ng2_A RNF4, snurf, ring finge 99.1 2E-11 7E-16 93.3 2.1 46 227-272 10-62 (71)
27 2ecv_A Tripartite motif-contai 99.1 4.2E-11 1.4E-15 94.1 3.9 47 226-272 18-70 (85)
28 2c2l_A CHIP, carboxy terminus 99.1 4.1E-11 1.4E-15 113.7 4.5 63 226-288 207-271 (281)
29 2ckl_B Ubiquitin ligase protei 99.1 4.9E-11 1.7E-15 106.4 4.3 63 226-288 53-119 (165)
30 1rmd_A RAG1; V(D)J recombinati 99.1 7.5E-11 2.6E-15 99.2 5.0 61 227-287 23-86 (116)
31 1jm7_A BRCA1, breast cancer ty 99.1 4.5E-11 1.5E-15 99.3 3.2 46 227-272 21-69 (112)
32 2ct2_A Tripartite motif protei 99.1 8.9E-11 3.1E-15 93.3 4.8 47 226-272 14-67 (88)
33 2xeu_A Ring finger protein 4; 99.1 3.1E-11 1.1E-15 90.2 2.0 46 227-272 3-55 (64)
34 1chc_A Equine herpes virus-1 r 99.1 5.2E-11 1.8E-15 90.6 3.2 47 228-274 6-53 (68)
35 2ecm_A Ring finger and CHY zin 99.1 5.8E-11 2E-15 86.4 3.3 45 228-272 6-54 (55)
36 2ecj_A Tripartite motif-contai 99.1 9.3E-11 3.2E-15 86.1 4.1 42 226-267 14-58 (58)
37 2ect_A Ring finger protein 126 99.0 9.3E-11 3.2E-15 91.6 3.9 47 226-272 14-63 (78)
38 2l0b_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 94.4 4.3 48 226-273 39-89 (91)
39 3hct_A TNF receptor-associated 99.0 1E-10 3.5E-15 99.0 3.9 61 226-286 17-79 (118)
40 1bor_A Transcription factor PM 99.0 5.4E-11 1.8E-15 88.1 1.8 44 226-272 5-48 (56)
41 1iym_A EL5; ring-H2 finger, ub 99.0 1.5E-10 5E-15 84.4 3.5 44 228-271 6-53 (55)
42 2f42_A STIP1 homology and U-bo 99.0 2.3E-10 7.9E-15 104.5 5.1 63 226-288 105-169 (179)
43 2ep4_A Ring finger protein 24; 99.0 3.5E-10 1.2E-14 87.4 4.9 49 226-274 14-65 (74)
44 1x4j_A Ring finger protein 38; 99.0 1.5E-10 5.3E-15 89.9 2.8 46 227-272 23-71 (75)
45 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.5E-15 87.0 3.0 45 228-272 4-54 (65)
46 2ecn_A Ring finger protein 141 99.0 2E-10 7E-15 87.8 2.8 46 226-272 14-59 (70)
47 3knv_A TNF receptor-associated 98.9 2.1E-10 7.1E-15 100.7 1.7 46 226-271 30-76 (141)
48 1v87_A Deltex protein 2; ring- 98.9 4.9E-10 1.7E-14 93.7 3.6 44 229-272 27-93 (114)
49 4ap4_A E3 ubiquitin ligase RNF 98.9 3.3E-10 1.1E-14 96.0 2.2 46 227-272 7-59 (133)
50 1e4u_A Transcriptional repress 98.8 2.7E-09 9.2E-14 84.7 5.4 47 226-272 10-61 (78)
51 4ic3_A E3 ubiquitin-protein li 98.8 6.4E-10 2.2E-14 86.8 1.5 45 227-275 24-69 (74)
52 3htk_C E3 SUMO-protein ligase 98.8 1.8E-09 6.1E-14 103.8 4.6 63 226-288 180-248 (267)
53 3hcs_A TNF receptor-associated 98.8 1.6E-09 5.4E-14 97.0 3.9 48 226-273 17-65 (170)
54 2ecl_A Ring-box protein 2; RNF 98.8 3E-09 1E-13 84.4 4.1 44 229-272 17-75 (81)
55 2ecg_A Baculoviral IAP repeat- 98.8 2.7E-09 9.3E-14 83.3 3.6 45 227-275 25-70 (75)
56 2vje_B MDM4 protein; proto-onc 98.8 1.8E-09 6.3E-14 81.9 2.3 49 227-275 7-58 (63)
57 2vje_A E3 ubiquitin-protein li 98.7 2.7E-09 9.4E-14 81.1 2.3 48 228-275 9-59 (64)
58 2y1n_A E3 ubiquitin-protein li 98.7 4.3E-09 1.5E-13 106.4 3.3 46 228-273 333-379 (389)
59 4ap4_A E3 ubiquitin ligase RNF 98.7 5.2E-09 1.8E-13 88.5 2.0 46 227-272 72-124 (133)
60 3dpl_R Ring-box protein 1; ubi 98.6 1.2E-08 4E-13 85.6 3.5 43 229-271 39-99 (106)
61 2ea5_A Cell growth regulator w 98.6 2.2E-08 7.7E-13 77.1 4.2 45 227-275 15-60 (68)
62 2yho_A E3 ubiquitin-protein li 98.6 1.1E-08 3.8E-13 81.1 1.3 43 228-274 19-62 (79)
63 2bay_A PRE-mRNA splicing facto 98.6 1.6E-08 5.5E-13 76.5 1.9 47 226-272 2-49 (61)
64 1wim_A KIAA0161 protein; ring 98.4 9.8E-08 3.3E-12 77.3 3.1 45 226-270 4-61 (94)
65 3t6p_A Baculoviral IAP repeat- 98.4 4.2E-08 1.4E-12 98.0 0.7 45 227-275 295-340 (345)
66 4a0k_B E3 ubiquitin-protein li 98.4 4E-08 1.4E-12 83.9 0.0 43 229-271 50-110 (117)
67 2d8s_A Cellular modulator of i 98.3 3.5E-07 1.2E-11 72.8 3.2 45 228-272 16-69 (80)
68 3vk6_A E3 ubiquitin-protein li 97.9 5E-06 1.7E-10 68.7 2.8 44 229-272 3-48 (101)
69 2ct0_A Non-SMC element 1 homol 97.9 1.1E-05 3.8E-10 63.3 4.4 45 229-273 17-64 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.6 4.5E-05 1.5E-09 57.3 4.0 45 228-272 7-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.4 4.5E-05 1.5E-09 76.0 2.3 50 226-275 307-375 (381)
72 1m9o_A Tristetraproline; Cys3H 97.1 0.00024 8.2E-09 55.2 3.0 31 167-197 9-39 (77)
73 2d9m_A Zinc finger CCCH-type d 96.7 0.00062 2.1E-08 52.6 1.8 25 171-196 21-45 (69)
74 1m9o_A Tristetraproline; Cys3H 96.5 0.00038 1.3E-08 54.0 0.0 29 167-195 47-75 (77)
75 2cqe_A KIAA1064 protein; CCCH 96.4 0.0012 4.2E-08 54.2 2.4 26 167-193 10-35 (98)
76 2rhk_C Cleavage and polyadenyl 96.1 0.002 6.8E-08 50.0 2.1 27 168-195 14-40 (72)
77 2d9n_A Cleavage and polyadenyl 96.0 0.0032 1.1E-07 49.3 2.7 28 168-196 8-35 (77)
78 2cqe_A KIAA1064 protein; CCCH 96.0 0.0023 7.8E-08 52.6 1.9 27 170-196 36-62 (98)
79 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0047 1.6E-07 49.9 2.6 32 227-258 3-37 (101)
80 3nw0_A Non-structural maintena 95.4 0.011 3.8E-07 55.9 4.3 46 228-273 181-229 (238)
81 3d2q_A Muscleblind-like protei 95.2 0.0067 2.3E-07 46.6 1.8 25 171-196 7-32 (70)
82 2fc6_A Nuclear, target of EGR1 94.4 0.016 5.6E-07 41.7 1.8 28 168-195 18-45 (50)
83 2ko5_A Ring finger protein Z; 94.1 0.025 8.6E-07 46.1 2.6 48 225-274 26-74 (99)
84 2rpp_A Muscleblind-like protei 93.4 0.059 2E-06 43.5 3.7 37 151-196 6-43 (89)
85 3d2n_A Muscleblind-like protei 93.0 0.041 1.4E-06 43.8 2.2 27 169-196 8-35 (83)
86 3m62_A Ubiquitin conjugation f 92.6 0.12 4.2E-06 57.5 5.9 65 226-290 890-956 (968)
87 2d9n_A Cleavage and polyadenyl 92.5 0.053 1.8E-06 42.3 2.1 24 172-196 40-63 (77)
88 2e5s_A Otthump00000018578; ZF- 92.1 0.028 9.4E-07 46.2 -0.0 25 171-196 21-46 (98)
89 3d2q_A Muscleblind-like protei 91.4 0.072 2.5E-06 40.8 1.7 24 170-195 42-65 (70)
90 2rhk_C Cleavage and polyadenyl 90.2 0.12 4E-06 39.9 1.9 25 171-196 45-69 (72)
91 2e5s_A Otthump00000018578; ZF- 88.8 0.16 5.6E-06 41.5 1.9 24 171-196 57-80 (98)
92 3u1l_A PRE-mRNA-splicing facto 88.1 0.15 5.3E-06 48.0 1.5 25 169-194 69-93 (240)
93 2cs3_A Protein C14ORF4, MY039 86.4 0.8 2.7E-05 36.3 4.4 35 225-259 13-51 (93)
94 3u9g_A Zinc finger CCCH-type a 84.0 0.26 8.8E-06 46.2 0.7 26 169-194 150-178 (229)
95 3i2d_A E3 SUMO-protein ligase 80.5 1.1 3.7E-05 44.9 3.7 64 225-288 247-316 (371)
96 4fo9_A E3 SUMO-protein ligase 77.8 1.5 5.1E-05 43.8 3.7 62 226-287 214-281 (360)
97 3d2n_A Muscleblind-like protei 77.6 0.89 3E-05 36.0 1.7 24 171-196 44-67 (83)
98 1z60_A TFIIH basal transcripti 71.4 2.2 7.4E-05 31.8 2.3 39 229-267 17-58 (59)
99 1m3v_A FLIN4, fusion of the LI 68.3 3 0.0001 34.4 2.9 46 228-273 33-81 (122)
100 3he5_B Synzip2; heterodimeric 68.1 7.9 0.00027 27.0 4.4 38 364-401 14-51 (52)
101 1weo_A Cellulose synthase, cat 60.6 9 0.00031 30.8 4.1 45 228-272 17-69 (93)
102 2rpp_A Muscleblind-like protei 60.4 3.5 0.00012 33.0 1.7 23 171-195 52-74 (89)
103 1joc_A EEA1, early endosomal a 55.9 4.9 0.00017 33.9 1.9 29 229-257 71-103 (125)
104 2xjy_A Rhombotin-2; oncoprotei 54.3 5.6 0.00019 32.8 2.0 47 226-272 28-77 (131)
105 2xqn_T Testin, TESS; metal-bin 54.3 6.7 0.00023 32.1 2.5 44 227-272 30-74 (126)
106 1y02_A CARP2, FYVE-ring finger 54.2 1.7 5.8E-05 36.8 -1.2 44 228-271 20-67 (120)
107 2pv0_B DNA (cytosine-5)-methyl 53.4 8.2 0.00028 38.8 3.4 46 226-271 92-149 (386)
108 2fiy_A Protein FDHE homolog; F 52.7 1.5 5.1E-05 42.8 -2.1 44 227-270 182-231 (309)
109 1wd2_A Ariadne-1 protein homol 51.8 2.9 0.0001 30.9 -0.1 33 228-260 7-47 (60)
110 1f62_A Transcription factor WS 51.3 8.1 0.00028 26.9 2.2 42 229-270 2-50 (51)
111 2lbm_A Transcriptional regulat 51.0 15 0.0005 31.9 4.2 42 228-269 64-116 (142)
112 1rut_X Flinc4, fusion protein 50.9 3.8 0.00013 36.4 0.5 46 227-272 32-80 (188)
113 2gmg_A Hypothetical protein PF 50.4 4 0.00014 33.8 0.5 29 238-271 66-94 (105)
114 2rgt_A Fusion of LIM/homeobox 49.2 13 0.00046 32.1 3.8 44 227-272 33-76 (169)
115 1use_A VAsp, vasodilator-stimu 48.4 35 0.0012 23.9 5.0 34 366-399 8-41 (45)
116 3mjh_B Early endosome antigen 46.6 3.3 0.00011 27.4 -0.5 15 227-241 5-19 (34)
117 2jtn_A LIM domain-binding prot 46.0 12 0.0004 32.9 2.9 45 226-272 86-130 (182)
118 2lri_C Autoimmune regulator; Z 45.9 16 0.00056 27.3 3.2 41 228-270 13-59 (66)
119 1iml_A CRIP, cysteine rich int 45.9 13 0.00046 27.5 2.8 46 227-274 27-74 (76)
120 1z2q_A LM5-1; membrane protein 45.5 11 0.00038 29.3 2.4 30 228-257 22-55 (84)
121 1vfy_A Phosphatidylinositol-3- 45.1 9.8 0.00033 28.8 1.9 28 229-256 13-44 (73)
122 3a1b_A DNA (cytosine-5)-methyl 45.1 11 0.00039 33.2 2.6 52 226-277 78-142 (159)
123 2yw8_A RUN and FYVE domain-con 44.7 11 0.00038 29.2 2.2 29 228-256 20-52 (82)
124 1x4u_A Zinc finger, FYVE domai 43.3 11 0.00038 29.2 2.1 29 228-256 15-47 (84)
125 3vth_A Hydrogenase maturation 43.0 9 0.00031 41.8 1.9 43 229-271 113-193 (761)
126 2cup_A Skeletal muscle LIM-pro 41.6 9.8 0.00033 29.8 1.5 44 227-272 33-77 (101)
127 3u5n_A E3 ubiquitin-protein li 41.0 5.6 0.00019 36.0 -0.0 44 228-271 8-55 (207)
128 3mpx_A FYVE, rhogef and PH dom 40.4 5.9 0.0002 39.3 0.0 32 227-258 375-410 (434)
129 2l5u_A Chromodomain-helicase-D 39.5 14 0.00048 27.0 2.0 42 226-269 10-57 (61)
130 1mm2_A MI2-beta; PHD, zinc fin 39.0 9.8 0.00033 27.9 1.0 43 226-270 8-56 (61)
131 1wfk_A Zinc finger, FYVE domai 38.7 12 0.00042 29.5 1.6 29 228-256 10-42 (88)
132 4g9i_A Hydrogenase maturation 38.5 12 0.0004 40.9 2.0 23 249-271 158-188 (772)
133 2lv9_A Histone-lysine N-methyl 38.1 12 0.00042 30.0 1.6 43 226-269 27-75 (98)
134 2k16_A Transcription initiatio 37.8 14 0.00047 27.9 1.8 46 226-271 17-69 (75)
135 2jrp_A Putative cytoplasmic pr 37.1 3.3 0.00011 32.7 -1.9 39 228-271 3-41 (81)
136 3t7l_A Zinc finger FYVE domain 36.9 15 0.00051 29.0 1.9 30 228-257 21-54 (90)
137 2jne_A Hypothetical protein YF 36.9 3.4 0.00012 33.8 -2.0 41 226-271 31-71 (101)
138 1dvp_A HRS, hepatocyte growth 36.4 11 0.00038 34.3 1.2 28 229-256 163-194 (220)
139 2jmo_A Parkin; IBR, E3 ligase, 36.2 3.9 0.00013 31.7 -1.6 20 244-265 55-74 (80)
140 3zyq_A Hepatocyte growth facto 36.2 11 0.00036 34.8 1.0 29 229-257 166-198 (226)
141 4gzn_C ZFP-57, zinc finger pro 35.4 16 0.00055 26.2 1.7 36 226-272 3-43 (60)
142 2yql_A PHD finger protein 21A; 33.1 6.6 0.00023 28.2 -0.7 41 227-269 9-55 (56)
143 3ttc_A HYPF, transcriptional r 32.2 17 0.00059 38.9 2.0 24 248-271 68-99 (657)
144 3o36_A Transcription intermedi 30.4 13 0.00045 32.8 0.6 43 229-271 6-52 (184)
145 2o35_A Hypothetical protein DU 29.8 18 0.00061 29.7 1.2 12 248-259 42-53 (105)
146 3fyb_A Protein of unknown func 29.5 18 0.00062 29.6 1.2 12 248-259 41-52 (104)
147 1wil_A KIAA1045 protein; ring 28.9 49 0.0017 26.3 3.6 28 229-257 17-47 (89)
148 1zbd_B Rabphilin-3A; G protein 28.8 14 0.00046 31.7 0.4 41 229-269 57-106 (134)
149 2d8v_A Zinc finger FYVE domain 28.3 27 0.00091 26.5 1.9 30 228-258 9-39 (67)
150 2epq_A POZ-, at HOOK-, and zin 28.2 44 0.0015 21.1 2.9 15 226-240 9-23 (45)
151 2zet_C Melanophilin; complex, 27.7 21 0.00072 31.1 1.4 42 228-270 69-117 (153)
152 3uk3_C Zinc finger protein 217 27.6 31 0.001 22.9 2.0 40 226-272 3-43 (57)
153 1x61_A Thyroid receptor intera 27.6 45 0.0015 24.1 3.1 34 227-260 33-67 (72)
154 3ql9_A Transcriptional regulat 27.4 45 0.0015 28.3 3.4 42 228-269 58-110 (129)
155 1bbo_A Human enhancer-binding 27.0 34 0.0012 22.7 2.2 35 227-272 1-40 (57)
156 2ee8_A Protein ODD-skipped-rel 27.0 75 0.0026 23.9 4.5 14 226-239 16-29 (106)
157 2ct7_A Ring finger protein 31; 26.4 7.4 0.00025 30.4 -1.6 28 230-257 28-61 (86)
158 2epr_A POZ-, at HOOK-, and zin 26.0 52 0.0018 21.2 2.9 15 226-240 11-25 (48)
159 1weu_A Inhibitor of growth fam 25.9 48 0.0016 26.4 3.1 44 226-271 35-86 (91)
160 2ctu_A Zinc finger protein 483 25.8 16 0.00055 25.5 0.3 17 226-242 17-33 (73)
161 3lqh_A Histone-lysine N-methyl 25.6 26 0.00089 31.4 1.7 45 229-273 4-66 (183)
162 1wew_A DNA-binding family prot 24.4 67 0.0023 24.3 3.6 44 226-270 15-72 (78)
163 1wen_A Inhibitor of growth fam 24.3 51 0.0018 24.8 2.9 44 226-271 15-66 (71)
164 2l4z_A DNA endonuclease RBBP8, 23.7 49 0.0017 27.2 3.0 32 227-258 88-122 (123)
165 3u9g_A Zinc finger CCCH-type a 23.1 34 0.0012 31.9 2.0 23 172-196 177-199 (229)
166 1we9_A PHD finger family prote 23.1 17 0.00057 26.5 -0.1 44 227-270 6-58 (64)
167 2d8x_A Protein pinch; LIM doma 22.9 54 0.0018 23.5 2.7 32 228-259 32-64 (70)
168 1x6e_A Zinc finger protein 24; 22.7 38 0.0013 24.0 1.8 40 226-272 13-53 (72)
169 1l8d_A DNA double-strand break 22.7 1.3E+02 0.0043 24.0 5.2 11 262-272 48-58 (112)
170 2eps_A POZ-, at HOOK-, and zin 22.0 74 0.0025 21.1 3.2 36 226-272 11-52 (54)
171 1vd4_A Transcription initiatio 22.0 6.6 0.00023 27.8 -2.5 37 226-272 13-50 (62)
172 2kmk_A Zinc finger protein GFI 21.8 32 0.0011 24.5 1.3 12 228-239 2-13 (82)
173 2yt9_A Zinc finger-containing 21.8 62 0.0021 23.7 3.0 15 226-240 6-20 (95)
174 1b8t_A Protein (CRP1); LIM dom 21.5 66 0.0022 28.2 3.5 43 227-271 142-185 (192)
175 2ro1_A Transcription intermedi 20.1 29 0.001 31.0 0.8 43 229-271 4-50 (189)
No 1
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=113.60 Aligned_cols=62 Identities=55% Similarity=1.325 Sum_probs=56.9
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccccccchHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~Li~~l~~ 287 (403)
..+.|+||++.|.+|++++|||+||..||..|+.....||+||..+...++++..|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~~ 75 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQK 75 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHSS
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHHh
Confidence 66899999999999999999999999999999998889999999999888888888777654
No 2
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=103.70 Aligned_cols=64 Identities=19% Similarity=0.498 Sum_probs=51.1
Q ss_pred CccccccccccccCCcccc-cCCcccHHhHHHHhcc--CCCccccCccc--cccccchHHHHHHHHHHh
Q psy16818 226 LPFKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKK--TPKCYICQKNT--FGEFRTAEKIVQKLKDAG 289 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~--~~~~~~~~~Li~~l~~~~ 289 (403)
..+.|+||++.|.+|++++ |||+||..||..|+.. ...||+||..+ ...+.++..|...+....
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 4589999999999999999 9999999999999974 35899999997 345566655555554443
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.27 E-value=2e-12 Score=101.24 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=43.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~ 272 (403)
..+.|+||++.|.+|++++|||+||..||..|+.. ...||+|+..+.
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34789999999999999999999999999999986 778999999985
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.25 E-value=5.2e-12 Score=101.61 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=52.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~ 288 (403)
..|.|+||+++|.+||+++|||+||..||..|+.....||+|+.++. ..+.++..|...+...
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 34899999999999999999999999999999998889999999985 3455565555554444
No 5
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.24 E-value=4.8e-12 Score=107.88 Aligned_cols=61 Identities=21% Similarity=0.557 Sum_probs=50.3
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCccccc--cccchHHHHHHHHH
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFG--EFRTAEKIVQKLKD 287 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~--~~~~~~~Li~~l~~ 287 (403)
.+.|+||++.|.+|++++|||+||..||..|+.. ...||+||..+.. .+.++..|...+..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 3689999999999999999999999999999974 4489999999954 56666666555443
No 6
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.24 E-value=2.4e-12 Score=112.02 Aligned_cols=46 Identities=35% Similarity=0.839 Sum_probs=43.4
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
+.|+||++.|.+|++++|||.||..||..|+.....||+||.++..
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 6799999999999999999999999999999988999999999854
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.24 E-value=1.2e-11 Score=102.70 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=52.8
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~ 288 (403)
..|.|+||+++|.+||+++|||+||..||..|+.....||+|+.++. ..+.++..|...+...
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 34899999999999999999999999999999998889999999985 4556666555555443
No 8
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=101.27 Aligned_cols=62 Identities=18% Similarity=0.515 Sum_probs=50.3
Q ss_pred ccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818 227 PFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~ 288 (403)
.+.|+||++.|.+|+++ +|||+||..||..|+.....||+||..+. ..+.++..|...+...
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSL 85 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence 46899999999999887 89999999999999998889999999986 3455554444444433
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=102.46 Aligned_cols=46 Identities=22% Similarity=0.714 Sum_probs=42.7
Q ss_pred ccccccccccccCCcc-cccCCcccHHhHHHHhccC-CCccccCcccc
Q psy16818 227 PFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKT-PKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~-t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~ 272 (403)
.+.|+||++.|.+|++ ++|||.||..||..|+... ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 3689999999999998 9999999999999999977 68999999984
No 10
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.20 E-value=1.5e-11 Score=101.79 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=53.1
Q ss_pred CccccccccccccCCcccccC-CcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTKCK-HYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~Cg-H~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~ 288 (403)
..|.|+||+++|.+||+++|| |+||..||..|+.....||+|+.++. ..+.++..|...+...
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 348999999999999999999 99999999999998889999999985 4556666665555544
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=9.6e-12 Score=95.93 Aligned_cols=47 Identities=28% Similarity=0.585 Sum_probs=43.5
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.+.+|++++|||.||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 44689999999999999999999999999999998889999999874
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=96.22 Aligned_cols=46 Identities=24% Similarity=0.714 Sum_probs=41.9
Q ss_pred CccccccccccccCCcccc-cCCcccHHhHHHHhccC--CCccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKT--PKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~~--~~CP~Cr~~~ 271 (403)
..+.|+||++.|.+|++++ |||.||..||..|+... ..||+||..+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 4578999999999999999 99999999999999854 6899999975
No 13
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.18 E-value=1.5e-11 Score=102.33 Aligned_cols=48 Identities=25% Similarity=0.673 Sum_probs=44.0
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
..+.|+||++.|.+|+++ +|||+||..||..|+.....||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 347899999999999987 999999999999999988999999999864
No 14
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=93.84 Aligned_cols=47 Identities=32% Similarity=0.757 Sum_probs=42.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.+.+|++++|||.||..||..|+. ....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 4578999999999999999999999999999995 5678999999874
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=94.54 Aligned_cols=47 Identities=28% Similarity=0.681 Sum_probs=43.3
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.|.+|+++ +|||.||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 457899999999999986 99999999999999988889999999884
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.8e-11 Score=93.21 Aligned_cols=47 Identities=30% Similarity=0.635 Sum_probs=42.2
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc---cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK---KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~---~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.+.+|++++|||.||..||..|+. ....||+||..+.
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 4478999999999999999999999999999996 4568999999874
No 17
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=107.91 Aligned_cols=61 Identities=26% Similarity=0.512 Sum_probs=50.5
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCccccc--cccchHHHHHHHHH
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTFG--EFRTAEKIVQKLKD 287 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~--~~~~~~~Li~~l~~ 287 (403)
.+.|+||++.|.+|++++|||+||..||..|+... ..||+||..+.. .+.++..|...+..
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~ 141 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDL 141 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHH
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 36899999999999999999999999999999864 489999999964 46666655555543
No 18
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.14 E-value=1.4e-11 Score=103.50 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=42.3
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~ 272 (403)
.+.|+||++.|.+|++++|||+||..||..|+.. ...||+||..+.
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4789999999999999999999999999999975 568999999985
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=96.67 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=42.6
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhcc-------CCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-------TPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-------~~~CP~Cr~~~~ 272 (403)
..+.|+||++.|.+|++++|||.||..|+..|+.. ...||+||..+.
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34789999999999999999999999999999976 568999999985
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=5.7e-11 Score=89.21 Aligned_cols=42 Identities=33% Similarity=0.716 Sum_probs=38.1
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc---cCCCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK---KTPKCYIC 267 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~---~~~~CP~C 267 (403)
..+.|+||++.|.+|++++|||.||..||..|+. ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4478999999999999999999999999999997 45689998
No 21
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=4.9e-11 Score=91.06 Aligned_cols=51 Identities=25% Similarity=0.500 Sum_probs=43.5
Q ss_pred Ccccccccccccc---CCcccccCCcccHHhHHHHhccCCCccccCcccccccc
Q psy16818 226 LPFKCYICRNSFK---DPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276 (403)
Q Consensus 226 ~~l~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 276 (403)
....|+||++.|. .+++++|||.||..||..|+.....||+||..+...++
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4467999999885 34678999999999999999988899999999876554
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=3e-11 Score=94.97 Aligned_cols=47 Identities=28% Similarity=0.709 Sum_probs=42.9
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhcc------CCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK------TPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~------~~~CP~Cr~~~~ 272 (403)
..+.|+||++.|.+|++++|||.||..|+..|+.. ...||+|+..+.
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34789999999999999999999999999999986 668999999885
No 23
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3e-11 Score=98.77 Aligned_cols=63 Identities=19% Similarity=0.445 Sum_probs=50.3
Q ss_pred CccccccccccccCCcccc-cCCcccHHhHHHHhccC------CCccc--cCcc-c-cccccchHHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKT------PKCYI--CQKN-T-FGEFRTAEKIVQKLKDA 288 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~~------~~CP~--Cr~~-~-~~~~~~~~~Li~~l~~~ 288 (403)
..|.|+||+++|.+||+++ |||+||..||..|+... ..||+ |+.. + ...+.++..|...+...
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 4489999999999999995 99999999999999753 58999 9865 4 34566666666655554
No 24
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=6e-11 Score=100.27 Aligned_cols=59 Identities=20% Similarity=0.665 Sum_probs=47.6
Q ss_pred ccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHH
Q psy16818 227 PFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKD 287 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~ 287 (403)
.+.|+||++.|.+|+++ +|||+||..||..|+. ..||+||..+. ..+.++..|...+..
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~ 82 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQL 82 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHH
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHH
Confidence 47899999999999999 9999999999999987 78999999985 344555444444333
No 25
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3e-11 Score=91.63 Aligned_cols=47 Identities=30% Similarity=0.752 Sum_probs=42.3
Q ss_pred CccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.|.+| ++++|||.||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 346799999999887 78899999999999999998889999998764
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.10 E-value=2e-11 Score=93.34 Aligned_cols=46 Identities=30% Similarity=0.800 Sum_probs=42.4
Q ss_pred ccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.+.|+||++.+.+| ++++|||.||..||..|+.....||+||..+.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 46799999999888 78899999999999999998899999999884
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.2e-11 Score=94.13 Aligned_cols=47 Identities=28% Similarity=0.680 Sum_probs=43.0
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhcc------CCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK------TPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~------~~~CP~Cr~~~~ 272 (403)
..+.|+||++.+.+|++++|||.||..|+..|+.. ...||+||..+.
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34789999999999999999999999999999876 678999999885
No 28
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=4.1e-11 Score=113.72 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=50.9
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCcccc-ccccchHHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTF-GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~-~~~~~~~~Li~~l~~~ 288 (403)
..|.|+||+++|.+||+++|||+||..||..|+... ..||+|+.++. ..+.++..|...+...
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 458999999999999999999999999999999864 44999999985 3455665555554433
No 29
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.08 E-value=4.9e-11 Score=106.41 Aligned_cols=63 Identities=22% Similarity=0.595 Sum_probs=50.1
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhcc-CCCccccCcccc--ccccchHHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKK-TPKCYICQKNTF--GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~--~~~~~~~~Li~~l~~~ 288 (403)
..+.|+||++.|.+|+++ +|||.||..||..|+.. ...||+||..+. ..+.++..|...+...
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKI 119 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence 346899999999999987 99999999999999986 678999999984 3455555554444433
No 30
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.08 E-value=7.5e-11 Score=99.19 Aligned_cols=61 Identities=31% Similarity=0.649 Sum_probs=49.4
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCccccc--cccchHHHHHHHHH
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFG--EFRTAEKIVQKLKD 287 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~--~~~~~~~Li~~l~~ 287 (403)
.+.|+||++.+.+|++++|||.||..||..|+.. ...||+||..+.. .+.+...+...+..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4689999999999999999999999999999986 6789999999853 23444555554443
No 31
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=4.5e-11 Score=99.33 Aligned_cols=46 Identities=35% Similarity=0.874 Sum_probs=41.7
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhccC---CCccccCcccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT---PKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~---~~CP~Cr~~~~ 272 (403)
.+.|+||++.+.+|++++|||.||..||..|+... ..||+||..+.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 46799999999999999999999999999999854 47999999985
No 32
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.9e-11 Score=93.27 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=42.3
Q ss_pred CccccccccccccC----CcccccCCcccHHhHHHHhccC---CCccccCcccc
Q psy16818 226 LPFKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKT---PKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~~---~~CP~Cr~~~~ 272 (403)
..+.|+||++.|.+ |++++|||.||..|+..|+... ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 34689999999998 9999999999999999999865 78999999874
No 33
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.07 E-value=3.1e-11 Score=90.17 Aligned_cols=46 Identities=30% Similarity=0.782 Sum_probs=42.0
Q ss_pred ccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.+.|+||++.+.+| ++++|||.||..|+..|+.....||+||..+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 36799999999887 78899999999999999998889999999874
No 34
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.07 E-value=5.2e-11 Score=90.56 Aligned_cols=47 Identities=23% Similarity=0.589 Sum_probs=42.5
Q ss_pred cccccccccccCC-cccccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818 228 FKCYICRNSFKDP-VMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 228 l~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
..|+||++.+.+| ++++|||.||..|+..|+.....||+||..+...
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 4699999999997 6889999999999999999889999999988643
No 35
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.06 E-value=5.8e-11 Score=86.44 Aligned_cols=45 Identities=22% Similarity=0.512 Sum_probs=40.5
Q ss_pred cccccccccccC----CcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 228 FKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..|+||++.|.+ +++++|||.||..|+..|+.....||+||..+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 469999999965 678899999999999999998899999999865
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9.3e-11 Score=86.15 Aligned_cols=42 Identities=29% Similarity=0.876 Sum_probs=37.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc---cCCCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK---KTPKCYIC 267 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~---~~~~CP~C 267 (403)
..+.|+||++.+.+|++++|||.||..||..|+. ....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3468999999999999999999999999999954 45689998
No 37
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.04 E-value=9.3e-11 Score=91.60 Aligned_cols=47 Identities=19% Similarity=0.603 Sum_probs=41.6
Q ss_pred CccccccccccccCC---cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDP---VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P---v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.|..+ ++++|||.||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 456899999999876 35699999999999999998889999999985
No 38
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=94.40 Aligned_cols=48 Identities=23% Similarity=0.525 Sum_probs=42.3
Q ss_pred CccccccccccccC---CcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 226 LPFKCYICRNSFKD---PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 226 ~~l~C~IC~~~~~~---Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
....|+||++.|.. ++.++|||.||..||..|+.....||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34679999999976 6788999999999999999988899999998753
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.03 E-value=1e-10 Score=98.97 Aligned_cols=61 Identities=20% Similarity=0.521 Sum_probs=48.2
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCC-CccccCcccccc-ccchHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTP-KCYICQKNTFGE-FRTAEKIVQKLK 286 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~-~~~~~~Li~~l~ 286 (403)
..+.|+||++.+.+|++++|||.||..||..|+.... .||+||..+... +.++..+...+.
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~ 79 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 79 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHc
Confidence 3478999999999999999999999999999998654 899999998542 333444444443
No 40
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=5.4e-11 Score=88.09 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=39.1
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.|.+|++++|||+||..|+..| ...||+||..+.
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 45789999999999999999999999999763 467999999874
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.01 E-value=1.5e-10 Score=84.42 Aligned_cols=44 Identities=20% Similarity=0.586 Sum_probs=39.4
Q ss_pred cccccccccccC---Ccccc-cCCcccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSFKD---PVMTK-CKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~---Pv~t~-CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
..|+||++.|.+ ++.++ |||.||..|+..|+.....||+||..+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 469999999987 66776 999999999999999889999999875
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.00 E-value=2.3e-10 Score=104.54 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=51.7
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCcccc-ccccchHHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTF-GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~-~~~~~~~~Li~~l~~~ 288 (403)
..|.||||+++|.+||+++|||+||..||..|+... ..||+|+.++. ..+.++..|...+...
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 448999999999999999999999999999999863 46999999985 3566666665555544
No 43
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.5e-10 Score=87.44 Aligned_cols=49 Identities=27% Similarity=0.550 Sum_probs=42.2
Q ss_pred CccccccccccccCCccc---ccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818 226 LPFKCYICRNSFKDPVMT---KCKHYFCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
....|+||++.|..+..+ +|+|.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345799999999877544 9999999999999999888999999988543
No 44
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.5e-10 Score=89.91 Aligned_cols=46 Identities=26% Similarity=0.610 Sum_probs=41.4
Q ss_pred ccccccccccccCC---cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDP---VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~P---v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
...|+||++.|..+ +.++|+|.||..||..|+.....||+||..+.
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 35799999999887 67899999999999999998899999999874
No 45
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.9e-10 Score=86.97 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=39.2
Q ss_pred cccccccc-cccCCc----ccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818 228 FKCYICRN-SFKDPV----MTKCKHYFCTKCALEHFKK-TPKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~-~~~~Pv----~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~ 272 (403)
+.|+||++ .+.+|+ +++|||+||..|+..|+.. ...||+||..+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 57999999 899984 6799999999999999764 467999999884
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2e-10 Score=87.82 Aligned_cols=46 Identities=28% Similarity=0.644 Sum_probs=42.1
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.+.+ ++++|||.||..|+..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 34679999999998 89999999999999999998889999999885
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.92 E-value=2.1e-10 Score=100.71 Aligned_cols=46 Identities=26% Similarity=0.776 Sum_probs=41.6
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCC-CccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTP-KCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~-~CP~Cr~~~ 271 (403)
..+.|+||+++|.+|+.++|||.||..||..|+.... .||+||.++
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4478999999999999999999999999999998554 899999975
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.91 E-value=4.9e-10 Score=93.67 Aligned_cols=44 Identities=27% Similarity=0.569 Sum_probs=38.3
Q ss_pred ccccccccccCCc------------------ccccCCcccHHhHHHHhc-----cCCCccccCcccc
Q psy16818 229 KCYICRNSFKDPV------------------MTKCKHYFCTKCALEHFK-----KTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~Pv------------------~t~CgH~FC~~Ci~~~~~-----~~~~CP~Cr~~~~ 272 (403)
.|+||++.|..|. +++|+|.||..||..|+. ....||+||..+.
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 6999999997764 679999999999999994 4668999999874
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=3.3e-10 Score=95.98 Aligned_cols=46 Identities=30% Similarity=0.800 Sum_probs=42.9
Q ss_pred ccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.+.|+||++.|.+| ++++|||.||..||.+|+.....||+||..+.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 46799999999998 88999999999999999998889999999985
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=2.7e-09 Score=84.65 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=38.6
Q ss_pred Ccccccccccccc--CCcccc--cCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFK--DPVMTK--CKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~--~Pv~t~--CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
..+.|+||++.+. ++++++ |||.||..|+..++. ....||.||..+.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3478999999884 455555 999999999999985 3568999999985
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.83 E-value=6.4e-10 Score=86.83 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=40.2
Q ss_pred ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF 275 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 275 (403)
.+.|+||++.+.+|++++|||. ||..|+..| ..||+||..+...+
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ 69 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcE
Confidence 3679999999999999999999 999999887 77999999986543
No 52
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.8e-09 Score=103.83 Aligned_cols=63 Identities=19% Similarity=0.392 Sum_probs=50.8
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhccC--CCccc--cCcccc-ccccchHHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKT--PKCYI--CQKNTF-GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~--~~CP~--Cr~~~~-~~~~~~~~Li~~l~~~ 288 (403)
..+.||||+.+|.+||++ .|||+||..||..|+... ..||+ |+..+. ..+.++..|...++..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 678999999999999985 999999999999999753 47999 999874 4566666554444433
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=96.96 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=43.0
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCccccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTFG 273 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~ 273 (403)
..+.|+||+++|.+|+.++|||+||..||..|+... ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 347899999999999999999999999999999753 489999999854
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3e-09 Score=84.39 Aligned_cols=44 Identities=32% Similarity=0.679 Sum_probs=37.1
Q ss_pred ccccccccccC--------------Cccc-ccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 229 KCYICRNSFKD--------------PVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~--------------Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.|+||++.|.+ ++++ +|+|.||..||.+|+.....||+||.++.
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 48888888865 3444 59999999999999998899999999864
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=83.27 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=39.1
Q ss_pred ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF 275 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 275 (403)
.+.|+||++.+.+|++++|||. ||..|+.. ...||+||..+...+
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 3579999999999999999999 99999964 367999999986543
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.78 E-value=1.8e-09 Score=81.86 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=43.2
Q ss_pred ccccccccccccCCccc--ccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818 227 PFKCYICRNSFKDPVMT--KCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF 275 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t--~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 275 (403)
...|.||++.+.+++++ +|||. ||..|+..|+.....||+||.++..++
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence 35799999999999877 99998 999999999987789999999986543
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.74 E-value=2.7e-09 Score=81.14 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=42.8
Q ss_pred cccccccccccCCccc--ccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818 228 FKCYICRNSFKDPVMT--KCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF 275 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t--~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 275 (403)
..|.||++.+.+++++ +|||. ||..|+..|+.....||+||.++..++
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence 4699999999999977 99999 899999999988889999999986543
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=4.3e-09 Score=106.44 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=42.6
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhc-cCCCccccCccccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTFG 273 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~ 273 (403)
..|+||++.+.+|++++|||.||..|+..|+. ....||+||..+..
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 68999999999999999999999999999998 67889999998853
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.66 E-value=5.2e-09 Score=88.50 Aligned_cols=46 Identities=30% Similarity=0.800 Sum_probs=42.0
Q ss_pred ccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.+.|+||++.|.+| +.++|||.||..||..|+...+.||+||..+.
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 35799999999887 78899999999999999999999999999874
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.64 E-value=1.2e-08 Score=85.59 Aligned_cols=43 Identities=28% Similarity=0.563 Sum_probs=38.0
Q ss_pred ccccccccccCC------------------cccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 229 KCYICRNSFKDP------------------VMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~P------------------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
.|+||++.|..+ +.++|+|.||..||..|+.....||+||..+
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 499999998765 2469999999999999999889999999985
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=2.2e-08 Score=77.13 Aligned_cols=45 Identities=24% Similarity=0.657 Sum_probs=39.2
Q ss_pred ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF 275 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 275 (403)
...|.||++.+.+++++||||. ||..|+.. ...||+||..+...+
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 4579999999999999999999 99999984 368999999986543
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.57 E-value=1.1e-08 Score=81.07 Aligned_cols=43 Identities=21% Similarity=0.576 Sum_probs=38.5
Q ss_pred cccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCcccccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
..|+||++.+.+|+.++|||. ||..|+..|. .||+||..+...
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCe
Confidence 479999999999999999999 9999998763 799999999643
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.56 E-value=1.6e-08 Score=76.50 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=42.3
Q ss_pred CccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
..|.|+||++++.+||++ +|||+||..||.+|+.....||+++.++.
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred CeEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 458899999999999999 99999999999999987778999999884
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=9.8e-08 Score=77.35 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=37.7
Q ss_pred CccccccccccccCCccc---ccCCcccHHhHHHHhcc--------CCCccc--cCcc
Q psy16818 226 LPFKCYICRNSFKDPVMT---KCKHYFCTKCALEHFKK--------TPKCYI--CQKN 270 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~~~~--------~~~CP~--Cr~~ 270 (403)
..+.|+||++.+..|.++ +|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 357899999999988654 79999999999999862 237999 9987
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.40 E-value=4.2e-08 Score=97.99 Aligned_cols=45 Identities=29% Similarity=0.619 Sum_probs=40.3
Q ss_pred ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF 275 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 275 (403)
.+.|+||++.+.+|+.++|||. ||..|+..| ..||+||.++...+
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 3689999999999999999999 999999877 67999999986543
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.38 E-value=4e-08 Score=83.90 Aligned_cols=43 Identities=30% Similarity=0.589 Sum_probs=0.0
Q ss_pred ccccccccccCC-----------------c-ccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 229 KCYICRNSFKDP-----------------V-MTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~P-----------------v-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
.|+||++.|..+ + .++|+|.||..||..|+.....||+||.++
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp -------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 599999998763 2 258999999999999999888999999975
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3.5e-07 Score=72.77 Aligned_cols=45 Identities=24% Similarity=0.613 Sum_probs=38.7
Q ss_pred ccccccccccc--CCcccccC-----CcccHHhHHHHhccC--CCccccCcccc
Q psy16818 228 FKCYICRNSFK--DPVMTKCK-----HYFCTKCALEHFKKT--PKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~~~~--~Pv~t~Cg-----H~FC~~Ci~~~~~~~--~~CP~Cr~~~~ 272 (403)
..|.||++.+. ++++++|+ |+|+..||.+|+... ..||+|+..+.
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 46999998874 67888996 999999999999854 58999999884
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.88 E-value=5e-06 Score=68.73 Aligned_cols=44 Identities=34% Similarity=0.575 Sum_probs=37.6
Q ss_pred ccccccccccCC-cccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 229 KCYICRNSFKDP-VMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 229 ~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
.|++|.-++..- .++||+|.||..|+..|.+ ....||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 599999888755 4779999999999999975 5678999999984
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=1.1e-05 Score=63.33 Aligned_cols=45 Identities=20% Similarity=0.461 Sum_probs=37.9
Q ss_pred ccccccccccCCc-ccccCCcccHHhHHHHhccC--CCccccCccccc
Q psy16818 229 KCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKT--PKCYICQKNTFG 273 (403)
Q Consensus 229 ~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~ 273 (403)
.|.||...+..-. ...|+|.|...||.+|++.. ..||+|+.....
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5999999997433 33899999999999999876 789999988753
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.60 E-value=4.5e-05 Score=57.27 Aligned_cols=45 Identities=18% Similarity=0.429 Sum_probs=37.5
Q ss_pred cccccccccccCCcccccC--C---cccHHhHHHHhcc--CCCccccCcccc
Q psy16818 228 FKCYICRNSFKDPVMTKCK--H---YFCTKCALEHFKK--TPKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~Cg--H---~FC~~Ci~~~~~~--~~~CP~Cr~~~~ 272 (403)
..|.||+....+|.++||. | +|+..|+.+|+.. ...||+|+..+.
T Consensus 7 ~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 7 PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4799999887778888865 4 8999999999873 578999998764
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.41 E-value=4.5e-05 Score=75.96 Aligned_cols=50 Identities=28% Similarity=0.525 Sum_probs=39.3
Q ss_pred CccccccccccccC----Cc----ccccCCcccHHhHHHHhccC-----------CCccccCccccccc
Q psy16818 226 LPFKCYICRNSFKD----PV----MTKCKHYFCTKCALEHFKKT-----------PKCYICQKNTFGEF 275 (403)
Q Consensus 226 ~~l~C~IC~~~~~~----Pv----~t~CgH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~ 275 (403)
....|+||+..+.+ |. ...|||.|+..|+.+|++.. ..||.|+.++...|
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 45679999998865 32 24899999999999999742 35999999886544
No 72
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.11 E-value=0.00024 Score=55.22 Aligned_cols=31 Identities=32% Similarity=0.983 Sum_probs=27.5
Q ss_pred cCCCccchhhhhhcCCCCCCccccccCCCcc
Q psy16818 167 DYQPDICKDYKETGFCGFGDSCKFLHDRTDY 197 (403)
Q Consensus 167 dyqpdiCkdYk~tG~CgfGDsCkflHdr~dy 197 (403)
.|.-.+|+.|..+|.|.||+.|+|+|+...+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~ 39 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGEL 39 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhh
Confidence 4677899999999999999999999998653
No 73
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.00062 Score=52.62 Aligned_cols=25 Identities=44% Similarity=0.987 Sum_probs=22.8
Q ss_pred ccchhhhhhcCCCCCCccccccCCCc
Q psy16818 171 DICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 171 diCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
.+|+.| ++|.|.||+.|.|.|+...
T Consensus 21 ~LC~~~-~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 21 SICDRY-MNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp SBCHHH-HHSCCSSCSSCSSBSSHHH
T ss_pred ccCccc-CcCCCCCCCccCCcCCHHH
Confidence 799999 9999999999999998644
No 74
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.54 E-value=0.00038 Score=54.05 Aligned_cols=29 Identities=34% Similarity=1.039 Sum_probs=0.0
Q ss_pred cCCCccchhhhhhcCCCCCCccccccCCC
Q psy16818 167 DYQPDICKDYKETGFCGFGDSCKFLHDRT 195 (403)
Q Consensus 167 dyqpdiCkdYk~tG~CgfGDsCkflHdr~ 195 (403)
.|...+|+.|..+|+|.||+.|+|+|+..
T Consensus 47 ~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 47 KYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp -----------------------------
T ss_pred cccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 35557899999999999999999999753
No 75
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.42 E-value=0.0012 Score=54.23 Aligned_cols=26 Identities=35% Similarity=0.929 Sum_probs=20.2
Q ss_pred cCCCccchhhhhhcCCCCCCccccccC
Q psy16818 167 DYQPDICKDYKETGFCGFGDSCKFLHD 193 (403)
Q Consensus 167 dyqpdiCkdYk~tG~CgfGDsCkflHd 193 (403)
.+...+|+.| .+|.|.+||.|+|+|+
T Consensus 10 ~~k~~lC~~f-~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 10 PKKRELCKFY-ITGFCARAENCPYMHG 35 (98)
T ss_dssp SCCCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred CCCCccCccc-ccCcCCCCCCCCCCCC
Confidence 4566688877 4788888888888887
No 76
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.15 E-value=0.002 Score=50.04 Aligned_cols=27 Identities=37% Similarity=0.918 Sum_probs=22.8
Q ss_pred CCCccchhhhhhcCCCCCCccccccCCC
Q psy16818 168 YQPDICKDYKETGFCGFGDSCKFLHDRT 195 (403)
Q Consensus 168 yqpdiCkdYk~tG~CgfGDsCkflHdr~ 195 (403)
+..-||+.|.. |.|.+||+|+|+|+..
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCC
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCccccc
Confidence 45568997776 9999999999999864
No 77
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.01 E-value=0.0032 Score=49.31 Aligned_cols=28 Identities=36% Similarity=0.850 Sum_probs=23.7
Q ss_pred CCCccchhhhhhcCCCCCCccccccCCCc
Q psy16818 168 YQPDICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 168 yqpdiCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
+..-||+.|.. |.|.+||.|.|+|+...
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCT
T ss_pred CcceeCHhHcc-CcCCCCCCCCCcccccc
Confidence 45568997777 99999999999998754
No 78
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.00 E-value=0.0023 Score=52.63 Aligned_cols=27 Identities=44% Similarity=0.696 Sum_probs=24.2
Q ss_pred CccchhhhhhcCCCCCCccccccCCCc
Q psy16818 170 PDICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 170 pdiCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
..+|+.|..+|+|.||+.|+|+|....
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 568999999999999999999998654
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.72 E-value=0.0047 Score=49.92 Aligned_cols=32 Identities=22% Similarity=0.639 Sum_probs=26.9
Q ss_pred cccccccccc-ccCCcc--cccCCcccHHhHHHHh
Q psy16818 227 PFKCYICRNS-FKDPVM--TKCKHYFCTKCALEHF 258 (403)
Q Consensus 227 ~l~C~IC~~~-~~~Pv~--t~CgH~FC~~Ci~~~~ 258 (403)
.+.|+||.+. +..|+. +.|+|+||..|+..++
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 3689999975 677877 8999999999999843
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.40 E-value=0.011 Score=55.86 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=37.0
Q ss_pred cccccccccccCCc-ccccCCcccHHhHHHHhccC--CCccccCccccc
Q psy16818 228 FKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKT--PKCYICQKNTFG 273 (403)
Q Consensus 228 l~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~ 273 (403)
..|.||.+++..-+ ...|+|.|+..|+..|++.. ..||.|+.....
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 46999999987543 33599999999999999754 489999988743
No 81
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.24 E-value=0.0067 Score=46.64 Aligned_cols=25 Identities=32% Similarity=1.060 Sum_probs=21.8
Q ss_pred ccchhhhhhcCCCCCCc-cccccCCCc
Q psy16818 171 DICKDYKETGFCGFGDS-CKFLHDRTD 196 (403)
Q Consensus 171 diCkdYk~tG~CgfGDs-CkflHdr~d 196 (403)
.||++| ..|.|..||+ |+|+|+...
T Consensus 7 ~vC~~f-~~G~C~rg~~~C~f~H~~~~ 32 (70)
T 3d2q_A 7 EVCREY-QRGNCNRGENDCRFAHPADS 32 (70)
T ss_dssp EBCHHH-HTTCCSSCTTTCSSBCCCTT
T ss_pred hhCHHH-hcCCCCCCCCCCCCccCccc
Confidence 489999 7899999996 999998753
No 82
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.36 E-value=0.016 Score=41.71 Aligned_cols=28 Identities=29% Similarity=0.761 Sum_probs=24.6
Q ss_pred CCCccchhhhhhcCCCCCCccccccCCC
Q psy16818 168 YQPDICKDYKETGFCGFGDSCKFLHDRT 195 (403)
Q Consensus 168 yqpdiCkdYk~tG~CgfGDsCkflHdr~ 195 (403)
..-.||+.|..-|||.+|..|.+.||-.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 3446999999999999999999999854
No 83
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.08 E-value=0.025 Score=46.13 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=38.5
Q ss_pred CCccccccccccccCCccccc-CCcccHHhHHHHhccCCCccccCcccccc
Q psy16818 225 HLPFKCYICRNSFKDPVMTKC-KHYFCTKCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 225 ~~~l~C~IC~~~~~~Pv~t~C-gH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
.-++.|..|-.... -.+.| .||+|..|+...+..+..||+|+.++...
T Consensus 26 ~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 35678998876554 45566 59999999999999999999999998543
No 84
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=93.43 E-value=0.059 Score=43.52 Aligned_cols=37 Identities=30% Similarity=0.803 Sum_probs=29.6
Q ss_pred cccccCCcceeeeeeccCCCccchhhhhhcCCCCCC-ccccccCCCc
Q psy16818 151 KGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGD-SCKFLHDRTD 196 (403)
Q Consensus 151 ~gp~~~~~~~r~~~~~dyqpdiCkdYk~tG~CgfGD-sCkflHdr~d 196 (403)
..|+|-+..++. .||+||.. |.|..|| .|+|+|....
T Consensus 6 ~~~~~~~~~~~~--------~VCrdFlr-G~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 6 SGPVRDTKWLTL--------EVCRQFQR-GTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp CSCCCSCSSSEE--------CBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred cccccCCCcchh--------hhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence 457776655554 46999998 9999999 9999998765
No 85
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.01 E-value=0.041 Score=43.82 Aligned_cols=27 Identities=30% Similarity=0.864 Sum_probs=23.3
Q ss_pred CCccchhhhhhcCCCCCC-ccccccCCCc
Q psy16818 169 QPDICKDYKETGFCGFGD-SCKFLHDRTD 196 (403)
Q Consensus 169 qpdiCkdYk~tG~CgfGD-sCkflHdr~d 196 (403)
+-.||++|.. |.|..|| .|+|+|....
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence 3468999998 9999998 9999999754
No 86
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.60 E-value=0.12 Score=57.53 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=54.6
Q ss_pred CccccccccccccCCcccccC-CcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHHhh
Q psy16818 226 LPFKCYICRNSFKDPVMTKCK-HYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDAGD 290 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~Cg-H~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~~~ 290 (403)
..|.|||-.+++.+||+++.| ++|=..+|.+|+.....||+=|.++. ..+.++..|...+.....
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 348999999999999999998 68999999999988889999999985 456677777777666543
No 87
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.50 E-value=0.053 Score=42.26 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=21.6
Q ss_pred cchhhhhhcCCCCCCccccccCCCc
Q psy16818 172 ICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 172 iCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
+|+.|..+|.|. |+.|.|+|....
T Consensus 40 ~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 40 ECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp BCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CCcccCCCCccC-CCCeeccCCCcc
Confidence 799999999999 999999998643
No 88
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.06 E-value=0.028 Score=46.16 Aligned_cols=25 Identities=28% Similarity=1.026 Sum_probs=22.3
Q ss_pred ccchhhhhhcCCCCCC-ccccccCCCc
Q psy16818 171 DICKDYKETGFCGFGD-SCKFLHDRTD 196 (403)
Q Consensus 171 diCkdYk~tG~CgfGD-sCkflHdr~d 196 (403)
.||++|.. |.|..|| .|+|+|+...
T Consensus 21 ~VCr~Flr-G~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 21 EVCREFQR-GNCARGETDCRFAHPADS 46 (98)
T ss_dssp EBCSHHHH-TCCSSHHHHCSSBCCSSC
T ss_pred hhhHHHhc-CcCCCCCCCCCCcCCchh
Confidence 48999988 9999999 6999999765
No 89
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=91.44 E-value=0.072 Score=40.77 Aligned_cols=24 Identities=33% Similarity=0.850 Sum_probs=20.7
Q ss_pred CccchhhhhhcCCCCCCccccccCCC
Q psy16818 170 PDICKDYKETGFCGFGDSCKFLHDRT 195 (403)
Q Consensus 170 pdiCkdYk~tG~CgfGDsCkflHdr~ 195 (403)
-.+|++|.. |.|..| .|+|+|...
T Consensus 42 ~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 42 VTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred ceeccccCc-CCCCCC-CcCeeCCHH
Confidence 358999987 999999 999999754
No 90
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=90.23 E-value=0.12 Score=39.95 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.1
Q ss_pred ccchhhhhhcCCCCCCccccccCCCc
Q psy16818 171 DICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 171 diCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
-+|+.|...|.|.+ +.|+|+|....
T Consensus 45 ~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 45 SECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CcccccCCCCCCCC-CCeeccCCCcc
Confidence 38999998899999 99999998654
No 91
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.79 E-value=0.16 Score=41.48 Aligned_cols=24 Identities=33% Similarity=0.826 Sum_probs=20.3
Q ss_pred ccchhhhhhcCCCCCCccccccCCCc
Q psy16818 171 DICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 171 diCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
.+|++|.. |.|.+| .|+|+|....
T Consensus 57 ~vC~~flk-G~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 57 TVCMDYIK-GRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp EBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred ccchhhcc-CCCCCC-CcCccCChHH
Confidence 48988876 999999 9999998654
No 92
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=88.10 E-value=0.15 Score=48.04 Aligned_cols=25 Identities=32% Similarity=0.774 Sum_probs=21.0
Q ss_pred CCccchhhhhhcCCCCCCccccccCC
Q psy16818 169 QPDICKDYKETGFCGFGDSCKFLHDR 194 (403)
Q Consensus 169 qpdiCkdYk~tG~CgfGDsCkflHdr 194 (403)
.|-||-.|. .|+|..|+.|.|+|..
T Consensus 69 ~~~~C~ffa-kG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 69 QLFFCLFFA-KGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CCSBCHHHH-TTCCSCGGGCSSBBSC
T ss_pred CCeEcCccc-cCCCCCCCCCCccCCC
Confidence 578996665 4999999999999964
No 93
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.40 E-value=0.8 Score=36.34 Aligned_cols=35 Identities=34% Similarity=0.827 Sum_probs=29.5
Q ss_pred CCccccccccccccCCccccc----CCcccHHhHHHHhc
Q psy16818 225 HLPFKCYICRNSFKDPVMTKC----KHYFCTKCALEHFK 259 (403)
Q Consensus 225 ~~~l~C~IC~~~~~~Pv~t~C----gH~FC~~Ci~~~~~ 259 (403)
..++.|.+|.+.+.+-....| .|.||..|.+...+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 478999999999988766655 69999999988876
No 94
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=84.02 E-value=0.26 Score=46.21 Aligned_cols=26 Identities=42% Similarity=0.816 Sum_probs=21.6
Q ss_pred CCccchhhhh---hcCCCCCCccccccCC
Q psy16818 169 QPDICKDYKE---TGFCGFGDSCKFLHDR 194 (403)
Q Consensus 169 qpdiCkdYk~---tG~CgfGDsCkflHdr 194 (403)
=|+||+.|+- -|.|.|++.|..||.=
T Consensus 150 LPeiC~~YkG~g~~g~C~~~~~C~kLHIC 178 (229)
T 3u9g_A 150 LPEICKSYKGEGRKQTCGQPQPCERLHIC 178 (229)
T ss_dssp SCCBCTTCCCSSSCCSCSSSSCCCSBCSC
T ss_pred CchHHHHhCCCCCCCcCCCCCCCcceecc
Confidence 3899999943 3799999999999963
No 95
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.47 E-value=1.1 Score=44.90 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=43.9
Q ss_pred CCccccccccccccCCccc-ccCCcccHH--hHHHHhcc--CCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818 225 HLPFKCYICRNSFKDPVMT-KCKHYFCTK--CALEHFKK--TPKCYICQKNTF-GEFRTAEKIVQKLKDA 288 (403)
Q Consensus 225 ~~~l~C~IC~~~~~~Pv~t-~CgH~FC~~--Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~ 288 (403)
.+.+.|||-...+..|+.. .|.|.-|.+ -++.+... .-.||+|.+.+. ..+.....+...++..
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 3778999999999999854 799985544 34444433 346999999884 3455555565555443
No 96
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=77.76 E-value=1.5 Score=43.78 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=43.5
Q ss_pred CccccccccccccCCccc-ccCCccc--HHhHHHHhcc--CCCccccCcccc-ccccchHHHHHHHHH
Q psy16818 226 LPFKCYICRNSFKDPVMT-KCKHYFC--TKCALEHFKK--TPKCYICQKNTF-GEFRTAEKIVQKLKD 287 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC--~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~~~Li~~l~~ 287 (403)
+.+.|||-...+..|+.. .|.|.-| ..-++.+... .-.||+|.+.+. ..+.....+.+.++.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 678999999999999854 8999944 4444444443 346999999884 345555666555543
No 97
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=77.59 E-value=0.89 Score=36.00 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=19.7
Q ss_pred ccchhhhhhcCCCCCCccccccCCCc
Q psy16818 171 DICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 171 diCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
.+|.||.. |.|..| .|+|+|....
T Consensus 44 ~vC~dflk-G~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 44 IACFDSLK-GRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp ECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred eehhHhhh-ccccCC-CcceeCChHH
Confidence 48988855 899999 9999998543
No 98
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=71.42 E-value=2.2 Score=31.77 Aligned_cols=39 Identities=28% Similarity=0.714 Sum_probs=29.7
Q ss_pred ccccccccccCCc---ccccCCcccHHhHHHHhccCCCcccc
Q psy16818 229 KCYICRNSFKDPV---MTKCKHYFCTKCALEHFKKTPKCYIC 267 (403)
Q Consensus 229 ~C~IC~~~~~~Pv---~t~CgH~FC~~Ci~~~~~~~~~CP~C 267 (403)
.|.-|...|.++. ...|++.||.+|=.=.......||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 5999999986543 45899999999965444455679988
No 99
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=68.26 E-value=3 Score=34.41 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=36.4
Q ss_pred ccccccccccc---CCcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818 228 FKCYICRNSFK---DPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273 (403)
Q Consensus 228 l~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 273 (403)
|.|..|...|. ......=|..||..|..+.+.....|..|..++..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 68899999886 24555678889999998887654589999998853
No 100
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=68.15 E-value=7.9 Score=26.96 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=29.7
Q ss_pred hhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy16818 364 QLTEDTIKENLSKQNVDKLGEKLEAYLKNIRDQLEKKL 401 (403)
Q Consensus 364 ~~~~~qi~e~l~~~~v~el~E~~~~~i~~~~~~~~~~~ 401 (403)
.+.-++|.-+.+.+++.+++--+++.|..|.+++-++.
T Consensus 14 rlkkdnlqlerdeqnlekiianlrdeiarlenevashe 51 (52)
T 3he5_B 14 RLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45567888888889999999888999999999886654
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.61 E-value=9 Score=30.82 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=33.5
Q ss_pred ccccccccccc-----CCc--ccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818 228 FKCYICRNSFK-----DPV--MTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272 (403)
Q Consensus 228 l~C~IC~~~~~-----~Pv--~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 272 (403)
-.|.||.+.+- ++. .-.|+-..|..|..--.+ .+..||.|+....
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 47999999862 232 237888899999975555 4678999998874
No 102
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=60.42 E-value=3.5 Score=33.00 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=18.9
Q ss_pred ccchhhhhhcCCCCCCccccccCCC
Q psy16818 171 DICKDYKETGFCGFGDSCKFLHDRT 195 (403)
Q Consensus 171 diCkdYk~tG~CgfGDsCkflHdr~ 195 (403)
.+|.||. .|.|..+ .|+|+|...
T Consensus 52 ~vC~dfl-kG~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 52 IACFDSL-KGRCSRE-NCKYLHPPT 74 (89)
T ss_dssp EBCHHHH-HTCCCCT-TCCSBCCCH
T ss_pred eeehhhh-hCcCCCC-CcceecCHH
Confidence 4788885 6999998 899999743
No 103
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.88 E-value=4.9 Score=33.89 Aligned_cols=29 Identities=24% Similarity=0.812 Sum_probs=22.2
Q ss_pred ccccccccccCC----cccccCCcccHHhHHHH
Q psy16818 229 KCYICRNSFKDP----VMTKCKHYFCTKCALEH 257 (403)
Q Consensus 229 ~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~ 257 (403)
.|.+|...|.-- ..-.||+.||..|....
T Consensus 71 ~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 71 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 699999988632 23489999999997543
No 104
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=54.35 E-value=5.6 Score=32.80 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=34.9
Q ss_pred CccccccccccccC---CcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKD---PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~---Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.=|.|..|...|.. +....=|..||..|..+.+.....|..|..++.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 34788889888852 445566788999999887654347999998875
No 105
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=54.32 E-value=6.7 Score=32.11 Aligned_cols=44 Identities=16% Similarity=0.415 Sum_probs=34.0
Q ss_pred ccccccccccccC-CcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~-Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
-|.|..|...+.. +....=|..||..|..+.+ .+.|+.|+.++.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCC
Confidence 4788999988865 3445668889999987654 467999999886
No 106
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=54.20 E-value=1.7 Score=36.77 Aligned_cols=44 Identities=25% Similarity=0.627 Sum_probs=29.8
Q ss_pred cccccccccccCC----cccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSFKDP----VMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
..|..|...|.-- ..-.||..||..|..........|-.|-...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4799999988532 2448999999999765544456688885543
No 107
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=53.35 E-value=8.2 Score=38.79 Aligned_cols=46 Identities=20% Similarity=0.506 Sum_probs=31.4
Q ss_pred CccccccccccccCCccc--ccCCcccHHhHHHHhcc----------CCCccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVMT--KCKHYFCTKCALEHFKK----------TPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t--~CgH~FC~~Ci~~~~~~----------~~~CP~Cr~~~ 271 (403)
...-|.+|.+--.--..- .|...||..||...+.. .-.|.+|.-..
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 345699998743211122 78899999999998742 23699997654
No 108
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=52.73 E-value=1.5 Score=42.84 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=33.5
Q ss_pred ccccccccccccCCccc----ccC--CcccHHhHHHHhccCCCccccCcc
Q psy16818 227 PFKCYICRNSFKDPVMT----KCK--HYFCTKCALEHFKKTPKCYICQKN 270 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t----~Cg--H~FC~~Ci~~~~~~~~~CP~Cr~~ 270 (403)
.-.||||.....-.++. .=| +.+|..|-..|.-....||.|+..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 35799999977544443 234 567999999998877899999886
No 109
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.83 E-value=2.9 Score=30.88 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=22.8
Q ss_pred cccccccccccCC-----ccc-c--cCCcccHHhHHHHhcc
Q psy16818 228 FKCYICRNSFKDP-----VMT-K--CKHYFCTKCALEHFKK 260 (403)
Q Consensus 228 l~C~IC~~~~~~P-----v~t-~--CgH~FC~~Ci~~~~~~ 260 (403)
-.||-|..++... ++- . |++.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3588888877532 222 3 8999999998777543
No 110
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=51.32 E-value=8.1 Score=26.94 Aligned_cols=42 Identities=26% Similarity=0.685 Sum_probs=26.3
Q ss_pred ccccccccccC-Cccc--ccCCcccHHhHHHHhccCC----CccccCcc
Q psy16818 229 KCYICRNSFKD-PVMT--KCKHYFCTKCALEHFKKTP----KCYICQKN 270 (403)
Q Consensus 229 ~C~IC~~~~~~-Pv~t--~CgH~FC~~Ci~~~~~~~~----~CP~Cr~~ 270 (403)
.|.||...-.. .++. .|...|+..|+..-+...+ .||.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47888764322 2222 6888899999965443322 49999764
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=51.02 E-value=15 Score=31.86 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=28.3
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhc-----------cCCCccccCc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-----------KTPKCYICQK 269 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-----------~~~~CP~Cr~ 269 (403)
..|.||.+-=.--..-.|-..||..|+..-+. ..-.||.|..
T Consensus 64 d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46999987432111237889999999996553 1236999964
No 112
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=50.90 E-value=3.8 Score=36.35 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=32.3
Q ss_pred ccccccccccccC---CcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKD---PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~---Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
=|.|..|...|.. +....=|..||..|..+.+.....|+.|...+.
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 3678888887763 445556788899998776653236888888774
No 113
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=50.38 E-value=4 Score=33.77 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=19.6
Q ss_pred cCCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 238 KDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 238 ~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
..|....||+.|+ ..+.....||.|+...
T Consensus 66 ~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCCBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred ECcChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 3455678999992 2233456899998765
No 114
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=49.21 E-value=13 Score=32.10 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=32.3
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
=|.|..|...|.......=|..||..|..+.+. +.|..|+..+.
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~~C~~C~~~I~ 76 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--TKCAACQLGIP 76 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS--CBCTTTCCBCC
T ss_pred cCccCCCCCcCCCCCcccCCeeeeccccccccc--ccccccccccC
Confidence 478888988886543445578899999877654 67888888764
No 115
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=48.42 E-value=35 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=29.0
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16818 366 TEDTIKENLSKQNVDKLGEKLEAYLKNIRDQLEK 399 (403)
Q Consensus 366 ~~~qi~e~l~~~~v~el~E~~~~~i~~~~~~~~~ 399 (403)
..+.++.++..+-.+||..+.+++|.-++++|.+
T Consensus 8 dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888889999999999999999876
No 116
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.60 E-value=3.3 Score=27.43 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=11.4
Q ss_pred ccccccccccccCCc
Q psy16818 227 PFKCYICRNSFKDPV 241 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv 241 (403)
.|.||||+..+.++.
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 478888888887763
No 117
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=45.98 E-value=12 Score=32.89 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=32.8
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
.=|.|..|...|.......=|..||..|..+.+. +.|..|+..+.
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--TKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS--CCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccccc--cccccCCCccC
Confidence 3478888988886543345577899999876543 67999988774
No 118
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=45.93 E-value=16 Score=27.28 Aligned_cols=41 Identities=22% Similarity=0.634 Sum_probs=29.1
Q ss_pred cccccccccccCCccc--ccCCcccHHhHHHHhccCC----CccccCcc
Q psy16818 228 FKCYICRNSFKDPVMT--KCKHYFCTKCALEHFKKTP----KCYICQKN 270 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t--~CgH~FC~~Ci~~~~~~~~----~CP~Cr~~ 270 (403)
-.|.||.+.= -+++ .|...|+..|+...+...+ .||.|...
T Consensus 13 ~~C~vC~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDGT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCCT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCCC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3599998632 2322 7899999999976665443 59999754
No 119
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=45.85 E-value=13 Score=27.49 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=32.9
Q ss_pred ccccccccccccC-CcccccCCcccH-HhHHHHhccCCCccccCcccccc
Q psy16818 227 PFKCYICRNSFKD-PVMTKCKHYFCT-KCALEHFKKTPKCYICQKNTFGE 274 (403)
Q Consensus 227 ~l~C~IC~~~~~~-Pv~t~CgH~FC~-~Ci~~~~~~~~~CP~Cr~~~~~~ 274 (403)
=|.|..|...+.. +....=|..||. .|..+.+. +.|..|.......
T Consensus 27 CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~--~~C~~C~~~~~~~ 74 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG--PKGFGRGGAESHT 74 (76)
T ss_dssp TCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS--CCCSSCCCSSSCC
T ss_pred CCCccccCccCCCCceECcCCeEeeCHHHHHHHhC--ccCCCcCCceeee
Confidence 4789999988865 344556788999 69876554 6799998655443
No 120
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.53 E-value=11 Score=29.31 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=22.7
Q ss_pred cccccccccccCC----cccccCCcccHHhHHHH
Q psy16818 228 FKCYICRNSFKDP----VMTKCKHYFCTKCALEH 257 (403)
Q Consensus 228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~ 257 (403)
..|.+|...|.-- ..-.||+.||..|....
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4699999988532 23489999999997543
No 121
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.08 E-value=9.8 Score=28.82 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=21.3
Q ss_pred ccccccccccCC----cccccCCcccHHhHHH
Q psy16818 229 KCYICRNSFKDP----VMTKCKHYFCTKCALE 256 (403)
Q Consensus 229 ~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~ 256 (403)
.|.+|...|.-- .--.||..||..|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 599999988532 2348999999999743
No 122
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=45.06 E-value=11 Score=33.22 Aligned_cols=52 Identities=23% Similarity=0.543 Sum_probs=33.3
Q ss_pred CccccccccccccCCc--ccccCCcccHHhHHHHhccC----------CCccccCccc-cccccc
Q psy16818 226 LPFKCYICRNSFKDPV--MTKCKHYFCTKCALEHFKKT----------PKCYICQKNT-FGEFRT 277 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv--~t~CgH~FC~~Ci~~~~~~~----------~~CP~Cr~~~-~~~~~~ 277 (403)
...-|.||-+--.--. ...|-..||..||...+... -.|.+|.-.. .+.+..
T Consensus 78 ~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l~~ll~~ 142 (159)
T 3a1b_A 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRR 142 (159)
T ss_dssp SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCEETTEEB
T ss_pred CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccHHHHhhh
Confidence 4457999986321101 12688899999999887631 2599997544 344444
No 123
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.72 E-value=11 Score=29.16 Aligned_cols=29 Identities=28% Similarity=0.766 Sum_probs=22.2
Q ss_pred cccccccccccCC----cccccCCcccHHhHHH
Q psy16818 228 FKCYICRNSFKDP----VMTKCKHYFCTKCALE 256 (403)
Q Consensus 228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~ 256 (403)
..|.+|...|.-- ..-.||..||..|...
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4699999988622 2348999999999754
No 124
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.33 E-value=11 Score=29.23 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=21.8
Q ss_pred cccccccccccCC----cccccCCcccHHhHHH
Q psy16818 228 FKCYICRNSFKDP----VMTKCKHYFCTKCALE 256 (403)
Q Consensus 228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~ 256 (403)
..|.+|...|.-- ..-.||..||..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4699999988532 2348999999999643
No 125
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=42.98 E-value=9 Score=41.77 Aligned_cols=43 Identities=30% Similarity=0.659 Sum_probs=30.6
Q ss_pred ccccccccccCC----------cccccCC--------------------cccHHhHHHHhcc--------CCCccccCcc
Q psy16818 229 KCYICRNSFKDP----------VMTKCKH--------------------YFCTKCALEHFKK--------TPKCYICQKN 270 (403)
Q Consensus 229 ~C~IC~~~~~~P----------v~t~CgH--------------------~FC~~Ci~~~~~~--------~~~CP~Cr~~ 270 (403)
.|+-|+..+.+| -.|.||. .+|..|..++-.. ...||.|+=.
T Consensus 113 ~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~ 192 (761)
T 3vth_A 113 VCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPS 192 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTTSCC
T ss_pred ccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCccCCe
Confidence 688888777766 2456663 2599999997652 2369999776
Q ss_pred c
Q psy16818 271 T 271 (403)
Q Consensus 271 ~ 271 (403)
+
T Consensus 193 l 193 (761)
T 3vth_A 193 L 193 (761)
T ss_dssp E
T ss_pred e
Confidence 5
No 126
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=41.64 E-value=9.8 Score=29.76 Aligned_cols=44 Identities=27% Similarity=0.673 Sum_probs=32.9
Q ss_pred ccccccccccccCC-cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDP-VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 272 (403)
=|.|..|...|... ....=|..||..|..+. ..+.|..|..++.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 37788999888654 34566788999998543 3478999999875
No 127
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=40.96 E-value=5.6 Score=36.03 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=28.4
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhccC----CCccccCccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT----PKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~----~~CP~Cr~~~ 271 (403)
-.|.+|...=.--..-.|...|+..|+...+... -.||.|+...
T Consensus 8 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3599998542211122688889999986544432 2599998765
No 128
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.44 E-value=5.9 Score=39.29 Aligned_cols=32 Identities=19% Similarity=0.563 Sum_probs=0.0
Q ss_pred ccccccccccccC----CcccccCCcccHHhHHHHh
Q psy16818 227 PFKCYICRNSFKD----PVMTKCKHYFCTKCALEHF 258 (403)
Q Consensus 227 ~l~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~ 258 (403)
...|.+|...|.- -....||+.||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 3479999998852 2345899999999986543
No 129
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=39.46 E-value=14 Score=26.99 Aligned_cols=42 Identities=19% Similarity=0.498 Sum_probs=28.3
Q ss_pred CccccccccccccCCccc--ccCCcccHHhHHHHhccC----CCccccCc
Q psy16818 226 LPFKCYICRNSFKDPVMT--KCKHYFCTKCALEHFKKT----PKCYICQK 269 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t--~CgH~FC~~Ci~~~~~~~----~~CP~Cr~ 269 (403)
....|.||... .-+++ .|...|+..|+..-+... -.||.|..
T Consensus 10 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34579999873 22222 788889999997644332 25999965
No 130
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.97 E-value=9.8 Score=27.86 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=27.7
Q ss_pred CccccccccccccCCccc--ccCCcccHHhHHHHhccC----CCccccCcc
Q psy16818 226 LPFKCYICRNSFKDPVMT--KCKHYFCTKCALEHFKKT----PKCYICQKN 270 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t--~CgH~FC~~Ci~~~~~~~----~~CP~Cr~~ 270 (403)
....|.||...- -+++ .|...|+..|+..-+... -.||.|...
T Consensus 8 ~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345799998632 2222 688889999987544332 249999654
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=38.72 E-value=12 Score=29.51 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=22.3
Q ss_pred cccccccccccCC----cccccCCcccHHhHHH
Q psy16818 228 FKCYICRNSFKDP----VMTKCKHYFCTKCALE 256 (403)
Q Consensus 228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~ 256 (403)
..|.+|...|.-- ..-.||+.||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4799999988532 2348999999999754
No 132
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=38.48 E-value=12 Score=40.88 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=17.7
Q ss_pred ccHHhHHHHhcc--------CCCccccCccc
Q psy16818 249 FCTKCALEHFKK--------TPKCYICQKNT 271 (403)
Q Consensus 249 FC~~Ci~~~~~~--------~~~CP~Cr~~~ 271 (403)
+|..|..++... ...||.|+=.+
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCceE
Confidence 599999998652 23699998766
No 133
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=38.14 E-value=12 Score=29.98 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=27.8
Q ss_pred CccccccccccccCCccc---ccCCcccHHhHHHHhcc---CCCccccCc
Q psy16818 226 LPFKCYICRNSFKDPVMT---KCKHYFCTKCALEHFKK---TPKCYICQK 269 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~~~~---~~~CP~Cr~ 269 (403)
..+.| ||........++ .|...|...|+..-... ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34678 898776554444 67778888887543222 236999964
No 134
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=37.81 E-value=14 Score=27.85 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=29.9
Q ss_pred CccccccccccccCCccc---ccCCcccHHhHHHHhcc----CCCccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVMT---KCKHYFCTKCALEHFKK----TPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~~~~----~~~CP~Cr~~~ 271 (403)
....|.||......-.++ .|...|+..|+.-.... .-.||.|...+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 446799998875432233 67788999998543332 23599996543
No 135
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=37.15 E-value=3.3 Score=32.73 Aligned_cols=39 Identities=18% Similarity=0.547 Sum_probs=24.6
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
..||+|...+..- =++.+|..|-... .....||.|+.++
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~-~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDF-SLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEE-EEEEECSSSCSCC
T ss_pred CCCCCCCCccccC----CCceECccccccC-CCcccCcchhhHH
Confidence 5699998766421 1244588886543 3334788888887
No 136
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.91 E-value=15 Score=28.99 Aligned_cols=30 Identities=23% Similarity=0.569 Sum_probs=22.7
Q ss_pred cccccccccccCC----cccccCCcccHHhHHHH
Q psy16818 228 FKCYICRNSFKDP----VMTKCKHYFCTKCALEH 257 (403)
Q Consensus 228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~ 257 (403)
..|.+|...|.-- ....||+.||..|....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4699999988521 23489999999997654
No 137
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.85 E-value=3.4 Score=33.81 Aligned_cols=41 Identities=17% Similarity=0.477 Sum_probs=28.9
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
....||+|...+.. .=++++|..|-.. +.....||.|..++
T Consensus 31 M~~~CP~Cq~eL~~----~g~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----DNGHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBEEE----ETTEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccccCccCCCccee----cCCEEECccccch-hhccccCcchhhHH
Confidence 33679999987642 1235559999753 45567799999988
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.36 E-value=11 Score=34.32 Aligned_cols=28 Identities=29% Similarity=0.730 Sum_probs=21.6
Q ss_pred ccccccccccCC----cccccCCcccHHhHHH
Q psy16818 229 KCYICRNSFKDP----VMTKCKHYFCTKCALE 256 (403)
Q Consensus 229 ~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~ 256 (403)
.|.+|...|.-- ..-.||+.||..|...
T Consensus 163 ~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 163 VCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred ccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 699999988522 2348999999999754
No 139
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=36.23 E-value=3.9 Score=31.70 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=16.1
Q ss_pred ccCCcccHHhHHHHhccCCCcc
Q psy16818 244 KCKHYFCTKCALEHFKKTPKCY 265 (403)
Q Consensus 244 ~CgH~FC~~Ci~~~~~~~~~CP 265 (403)
.|++.||..|...|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999988765 4554
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.19 E-value=11 Score=34.83 Aligned_cols=29 Identities=31% Similarity=0.694 Sum_probs=22.2
Q ss_pred ccccccccccCC----cccccCCcccHHhHHHH
Q psy16818 229 KCYICRNSFKDP----VMTKCKHYFCTKCALEH 257 (403)
Q Consensus 229 ~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~ 257 (403)
.|.+|...|.-- ..-.||+.||..|....
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 599999888521 24589999999997643
No 141
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=35.42 E-value=16 Score=26.25 Aligned_cols=36 Identities=25% Similarity=0.539 Sum_probs=24.0
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc-----cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-----KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-----~~~~CP~Cr~~~~ 272 (403)
.|+.|.+|...|..... +..+.. +...|+.|++.+.
T Consensus 3 Kpy~C~~C~k~F~~~~~-----------L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASG-----------LSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp CCEECTTTCCEESSHHH-----------HHHHHHHHHTCCCEECTTTCCEES
T ss_pred CCccCCCCCCEeCCHHH-----------HHHHHHHhCCCcCeECCCCCCCcC
Confidence 68999999998876532 222222 2346999988764
No 142
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.13 E-value=6.6 Score=28.16 Aligned_cols=41 Identities=27% Similarity=0.629 Sum_probs=25.8
Q ss_pred ccccccccccccCCccc--ccCCcccHHhHHHHhccCC----CccccCc
Q psy16818 227 PFKCYICRNSFKDPVMT--KCKHYFCTKCALEHFKKTP----KCYICQK 269 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t--~CgH~FC~~Ci~~~~~~~~----~CP~Cr~ 269 (403)
...|.||... ..++. .|...|+..|+..-+...+ .||.|..
T Consensus 9 ~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3469999874 22222 6788888888865443322 4888854
No 143
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=32.21 E-value=17 Score=38.89 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=18.0
Q ss_pred cccHHhHHHHhcc--------CCCccccCccc
Q psy16818 248 YFCTKCALEHFKK--------TPKCYICQKNT 271 (403)
Q Consensus 248 ~FC~~Ci~~~~~~--------~~~CP~Cr~~~ 271 (403)
.+|..|..++... ...||.|+=.+
T Consensus 68 ~mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 68 PLCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp CCCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 3699999997652 24699997766
No 144
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=30.45 E-value=13 Score=32.80 Aligned_cols=43 Identities=21% Similarity=0.472 Sum_probs=27.3
Q ss_pred ccccccccccCCcccccCCcccHHhHHHHhccC----CCccccCccc
Q psy16818 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT----PKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~----~~CP~Cr~~~ 271 (403)
.|.||...=.--..-.|...|+..|+...+... -.||.|+...
T Consensus 6 ~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 6 WCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred ccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 599998542111122688889999976544432 2599998754
No 145
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.81 E-value=18 Score=29.66 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=11.0
Q ss_pred cccHHhHHHHhc
Q psy16818 248 YFCTKCALEHFK 259 (403)
Q Consensus 248 ~FC~~Ci~~~~~ 259 (403)
.||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999997
No 146
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.49 E-value=18 Score=29.56 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=11.0
Q ss_pred cccHHhHHHHhc
Q psy16818 248 YFCTKCALEHFK 259 (403)
Q Consensus 248 ~FC~~Ci~~~~~ 259 (403)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999997
No 147
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=28.89 E-value=49 Score=26.32 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=20.6
Q ss_pred ccccccccccCCccc---ccCCcccHHhHHHH
Q psy16818 229 KCYICRNSFKDPVMT---KCKHYFCTKCALEH 257 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~ 257 (403)
.|.||...- .-.++ -|+-+|+..|+.+.
T Consensus 17 ~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCcccccc-ccceeccccccccccHhhcccc
Confidence 699997533 33333 57899999999986
No 148
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.77 E-value=14 Score=31.65 Aligned_cols=41 Identities=32% Similarity=0.788 Sum_probs=27.0
Q ss_pred cccccccccc---CC--cccccCCcccHHhHHHHhcc----CCCccccCc
Q psy16818 229 KCYICRNSFK---DP--VMTKCKHYFCTKCALEHFKK----TPKCYICQK 269 (403)
Q Consensus 229 ~C~IC~~~~~---~P--v~t~CgH~FC~~Ci~~~~~~----~~~CP~Cr~ 269 (403)
.|.+|...|. ++ +...|.|.+|..|-...... .-.|-+|.+
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred cccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 6999999883 22 35589999999996533111 123777755
No 149
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.34 E-value=27 Score=26.52 Aligned_cols=30 Identities=23% Similarity=0.587 Sum_probs=22.3
Q ss_pred cccccccccccCCccccc-CCcccHHhHHHHh
Q psy16818 228 FKCYICRNSFKDPVMTKC-KHYFCTKCALEHF 258 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~C-gH~FC~~Ci~~~~ 258 (403)
.-|.||.+.-. -..+.| |-.||..|+.+..
T Consensus 9 pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 9 PWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 46999998732 224578 7889999998875
No 150
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.20 E-value=44 Score=21.12 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=11.8
Q ss_pred CccccccccccccCC
Q psy16818 226 LPFKCYICRNSFKDP 240 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P 240 (403)
.|+.|.+|...|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK 23 (45)
T ss_dssp CSSEETTTTEECSCH
T ss_pred CCCcCCCCCcccCCH
Confidence 678999998887654
No 151
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.70 E-value=21 Score=31.14 Aligned_cols=42 Identities=17% Similarity=0.547 Sum_probs=28.1
Q ss_pred ccccccccccc---CC--cccccCCcccHHhHHHHhcc--CCCccccCcc
Q psy16818 228 FKCYICRNSFK---DP--VMTKCKHYFCTKCALEHFKK--TPKCYICQKN 270 (403)
Q Consensus 228 l~C~IC~~~~~---~P--v~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~ 270 (403)
-.|.+|...|. ++ +...|.|.+|..|-. +... .-.|-+|.+.
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 36999999863 23 355899999999973 2221 2248888553
No 152
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=27.64 E-value=31 Score=22.94 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=21.7
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHh-ccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHF-KKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~-~~~~~CP~Cr~~~~ 272 (403)
.|+.|.+|...|.....+. .| +..+. .....|+.|...+.
T Consensus 3 ~~~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLN-IH------LRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp --CBCTTTCCBCSCHHHHH-HH------HHHHHCCCCEECSSSSCEES
T ss_pred CCccCCCCcchhCChHHHH-HH------HHHcCCCCCcCCCCCcchhC
Confidence 5788999998887653221 11 01111 12346999987653
No 153
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.64 E-value=45 Score=24.08 Aligned_cols=34 Identities=18% Similarity=0.572 Sum_probs=22.4
Q ss_pred ccccccccccccCC-cccccCCcccHHhHHHHhcc
Q psy16818 227 PFKCYICRNSFKDP-VMTKCKHYFCTKCALEHFKK 260 (403)
Q Consensus 227 ~l~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~~ 260 (403)
=|.|..|...|... ....=+..||..|..+.+..
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 36777887777532 33455677888888776653
No 154
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=27.38 E-value=45 Score=28.32 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=27.5
Q ss_pred cccccccccccCCcccccCCcccHHhHHHHhc-----------cCCCccccCc
Q psy16818 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-----------KTPKCYICQK 269 (403)
Q Consensus 228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-----------~~~~CP~Cr~ 269 (403)
..|.||.+-=.-..--.|-..||..|+...+. ..-.|+.|.-
T Consensus 58 ~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35999986422112237889999999987521 1236999954
No 155
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=27.01 E-value=34 Score=22.72 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=21.3
Q ss_pred ccccccccccccCCcccccCCcccHHhHHHHhc-----cCCCccccCcccc
Q psy16818 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-----KTPKCYICQKNTF 272 (403)
Q Consensus 227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-----~~~~CP~Cr~~~~ 272 (403)
|+.|.+|...|..+..+ ..+.. ....|+.|+..+.
T Consensus 1 p~~C~~C~~~f~~~~~l-----------~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 1 KYICEECGIRXKKPSML-----------KKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CCBCTTTCCBCSSHHHH-----------HHHHHHTSSCCCEECSSSSCEES
T ss_pred CCcCCCCcCcCCCHHHH-----------HHHHHhcCCCCCccCCCCCchhc
Confidence 57799888888765322 22221 2346999988653
No 156
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=27.00 E-value=75 Score=23.89 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=10.8
Q ss_pred CccccccccccccC
Q psy16818 226 LPFKCYICRNSFKD 239 (403)
Q Consensus 226 ~~l~C~IC~~~~~~ 239 (403)
.++.|.+|...|..
T Consensus 16 ~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 16 KEFICKFCGRHFTK 29 (106)
T ss_dssp CCCBCSSSCCBCSS
T ss_pred cCeECCCCCCccCC
Confidence 67888888888754
No 157
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.44 E-value=7.4 Score=30.39 Aligned_cols=28 Identities=25% Similarity=0.786 Sum_probs=19.6
Q ss_pred ccccccccc-C----Cccc-ccCCcccHHhHHHH
Q psy16818 230 CYICRNSFK-D----PVMT-KCKHYFCTKCALEH 257 (403)
Q Consensus 230 C~IC~~~~~-~----Pv~t-~CgH~FC~~Ci~~~ 257 (403)
||-|...+. . ++.- .|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 887777553 1 2333 49999999998877
No 158
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.96 E-value=52 Score=21.20 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=12.3
Q ss_pred CccccccccccccCC
Q psy16818 226 LPFKCYICRNSFKDP 240 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P 240 (403)
.++.|.+|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 11 KQVACEICGKIFRDV 25 (48)
T ss_dssp CSEEETTTTEEESSH
T ss_pred cCeeCCCCCcccCCH
Confidence 789999998888654
No 159
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.88 E-value=48 Score=26.42 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=27.0
Q ss_pred CccccccccccccCCccc---c--cC-CcccHHhHHHHhc--cCCCccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVMT---K--CK-HYFCTKCALEHFK--KTPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t---~--Cg-H~FC~~Ci~~~~~--~~~~CP~Cr~~~ 271 (403)
.+..| ||...... .++ . |. ..|+..|+.-... ..-.||.|....
T Consensus 35 e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 55778 99987643 344 3 54 4688888752111 134599997643
No 160
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.77 E-value=16 Score=25.54 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=13.0
Q ss_pred CccccccccccccCCcc
Q psy16818 226 LPFKCYICRNSFKDPVM 242 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~ 242 (403)
.|+.|.+|...|.....
T Consensus 17 ~~~~C~~C~k~f~~~~~ 33 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRST 33 (73)
T ss_dssp SEEECSSSCCEEECCCC
T ss_pred CCeeCCcccchhCCHHH
Confidence 67889999988876543
No 161
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=25.57 E-value=26 Score=31.43 Aligned_cols=45 Identities=22% Similarity=0.551 Sum_probs=29.8
Q ss_pred ccccccccccCCc----cc---ccCCcccHHhHHHH------hc-----cCCCccccCccccc
Q psy16818 229 KCYICRNSFKDPV----MT---KCKHYFCTKCALEH------FK-----KTPKCYICQKNTFG 273 (403)
Q Consensus 229 ~C~IC~~~~~~Pv----~t---~CgH~FC~~Ci~~~------~~-----~~~~CP~Cr~~~~~ 273 (403)
.|+||...+.+.- ++ .|...|+..|..-. .. ....||.|+...+.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 5999999886542 44 57777888885321 11 14689999876543
No 162
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.44 E-value=67 Score=24.35 Aligned_cols=44 Identities=25% Similarity=0.632 Sum_probs=28.0
Q ss_pred CccccccccccccCCccc-----ccCCcccHHhHHHHhc---------cCCCccccCcc
Q psy16818 226 LPFKCYICRNSFKDPVMT-----KCKHYFCTKCALEHFK---------KTPKCYICQKN 270 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t-----~CgH~FC~~Ci~~~~~---------~~~~CP~Cr~~ 270 (403)
.++.| ||......-.++ .|...|+..|+--.-. ....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 66789 899875444444 4667788888742211 23469988653
No 163
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=24.34 E-value=51 Score=24.80 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=27.1
Q ss_pred CccccccccccccCCccc---c--cC-CcccHHhHHHHhc--cCCCccccCccc
Q psy16818 226 LPFKCYICRNSFKDPVMT---K--CK-HYFCTKCALEHFK--KTPKCYICQKNT 271 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t---~--Cg-H~FC~~Ci~~~~~--~~~~CP~Cr~~~ 271 (403)
.+..| ||....... ++ . |. ..|+..|+.-... ..-.||.|....
T Consensus 15 ~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 55778 899865433 44 3 55 5788888852111 123599997654
No 164
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.71 E-value=49 Score=27.20 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=23.0
Q ss_pred cccccccccccc---CCcccccCCcccHHhHHHHh
Q psy16818 227 PFKCYICRNSFK---DPVMTKCKHYFCTKCALEHF 258 (403)
Q Consensus 227 ~l~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~ 258 (403)
=|.|..|...|. ......=|..||..|..+.+
T Consensus 88 CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 88 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp TSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred ccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 377888888885 34555677888998876643
No 165
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=23.15 E-value=34 Score=31.86 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=20.0
Q ss_pred cchhhhhhcCCCCCCccccccCCCc
Q psy16818 172 ICKDYKETGFCGFGDSCKFLHDRTD 196 (403)
Q Consensus 172 iCkdYk~tG~CgfGDsCkflHdr~d 196 (403)
|| .|+-.|-|.| .+||-.|+-.+
T Consensus 177 IC-~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 177 IC-EHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp SC-HHHHTTCCCC-SSCSSCCCTTS
T ss_pred cc-chhhcCCcCC-CCccCccCccC
Confidence 89 6778999999 79999998655
No 166
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.13 E-value=17 Score=26.49 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=26.7
Q ss_pred ccccccccccccC-Cccc---ccCCcccHHhHHHHhc-----cCCCccccCcc
Q psy16818 227 PFKCYICRNSFKD-PVMT---KCKHYFCTKCALEHFK-----KTPKCYICQKN 270 (403)
Q Consensus 227 ~l~C~IC~~~~~~-Pv~t---~CgH~FC~~Ci~~~~~-----~~~~CP~Cr~~ 270 (403)
+..|+||...+.+ -.++ .|..-|+..|+--... ....||.|+..
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3579999988742 2333 5666777777643221 23458888653
No 167
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.93 E-value=54 Score=23.55 Aligned_cols=32 Identities=19% Similarity=0.581 Sum_probs=20.3
Q ss_pred cccccccccccCC-cccccCCcccHHhHHHHhc
Q psy16818 228 FKCYICRNSFKDP-VMTKCKHYFCTKCALEHFK 259 (403)
Q Consensus 228 l~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~ 259 (403)
|.|..|...+..- ....=+..||..|..+.+.
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 6677777766543 2334566778887766654
No 168
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.65 E-value=38 Score=23.97 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=23.0
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHh-ccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHF-KKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~-~~~~~CP~Cr~~~~ 272 (403)
.++.|.+|...|.....+. .|. ..+. .....|+.|...+.
T Consensus 13 k~~~C~~C~k~f~~~~~L~-~H~------~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILV-QHQ------RVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHHHH-HHH------HGGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHHHH-HHH------HhcCCCCCeECCCCCcccC
Confidence 6799999998887653221 010 0001 12346999987653
No 169
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.65 E-value=1.3e+02 Score=23.95 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.9
Q ss_pred CCccccCcccc
Q psy16818 262 PKCYICQKNTF 272 (403)
Q Consensus 262 ~~CP~Cr~~~~ 272 (403)
..||+|+.++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 46999998876
No 170
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.00 E-value=74 Score=21.11 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=23.4
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHhc------cCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK------KTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~------~~~~CP~Cr~~~~ 272 (403)
.|+.|.+|...|..... +..+.. ....|++|.+.+.
T Consensus 11 k~~~C~~C~k~f~~~~~-----------L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDH-----------LNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CCEECSSSCCEESSHHH-----------HHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCeECCCCCcccCCHHH-----------HHHHHHHhcCCCCCccCCCCCCCCC
Confidence 77999999888865422 223221 2357999988753
No 171
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.97 E-value=6.6 Score=27.78 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=22.6
Q ss_pred CccccccccccccCCcccccCCcccHHhHHHHh-ccCCCccccCcccc
Q psy16818 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHF-KKTPKCYICQKNTF 272 (403)
Q Consensus 226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~-~~~~~CP~Cr~~~~ 272 (403)
.|+.|++|...|.....+. ..+. .....|+.|+..+.
T Consensus 13 k~~~C~~C~k~F~~~~~l~----------~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQ----------LFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHH----------HEETTTTEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhH----------hhcCCCCCEECCCCCCccc
Confidence 6889999988876432221 0001 12346999998873
No 172
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=21.85 E-value=32 Score=24.49 Aligned_cols=12 Identities=58% Similarity=1.229 Sum_probs=6.5
Q ss_pred cccccccccccC
Q psy16818 228 FKCYICRNSFKD 239 (403)
Q Consensus 228 l~C~IC~~~~~~ 239 (403)
+.|.+|...|..
T Consensus 2 ~~C~~C~~~f~~ 13 (82)
T 2kmk_A 2 FDCKICGKSFKR 13 (82)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCCcccccC
Confidence 456666555543
No 173
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.79 E-value=62 Score=23.75 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=10.8
Q ss_pred CccccccccccccCC
Q psy16818 226 LPFKCYICRNSFKDP 240 (403)
Q Consensus 226 ~~l~C~IC~~~~~~P 240 (403)
.++.|.+|...|...
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (95)
T 2yt9_A 6 SGVACEICGKIFRDV 20 (95)
T ss_dssp SCEECSSSCCEESSS
T ss_pred CCeECCCCCCccCCh
Confidence 567788888777544
No 174
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.50 E-value=66 Score=28.19 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=32.7
Q ss_pred ccccccccccccC-CcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818 227 PFKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271 (403)
Q Consensus 227 ~l~C~IC~~~~~~-Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~ 271 (403)
=|.|..|...|.. .....=+..||..|..+.+. +.|..|+..+
T Consensus 142 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~--~kc~~C~~~~ 185 (192)
T 1b8t_A 142 CFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG--PKGFGFGQGA 185 (192)
T ss_dssp TCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC--CCCCCCCCCC
T ss_pred cCCccccCCCCCCCcccccCCEEeCHHHHHHhcC--CcCCCCCCcc
Confidence 3788999888854 34456678899999987764 6799998774
No 175
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.05 E-value=29 Score=30.97 Aligned_cols=43 Identities=19% Similarity=0.521 Sum_probs=26.5
Q ss_pred ccccccccccCCcccccCCcccHHhHHHHhccC----CCccccCccc
Q psy16818 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT----PKCYICQKNT 271 (403)
Q Consensus 229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~----~~CP~Cr~~~ 271 (403)
.|.+|...-.--..-.|...|+..|+..-+... -.||.|....
T Consensus 4 ~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 4 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred cCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 588888543211123677888888886544322 2599997653
Done!