RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16818
(403 letters)
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 129 bits (326), Expect = 4e-35
Identities = 77/289 (26%), Positives = 121/289 (41%), Gaps = 45/289 (15%)
Query: 3 KKRQVKQNTRKRQNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQVEDSESDE 62
K ++N +KRQ + SE + +EK + + K +
Sbjct: 9 KSSSDEKNQKKRQKINFSEEKLVAS--DEEKGSSDLMSLAK---------------SGNS 51
Query: 63 SSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDDK 122
+ Q+ + + + D+ + T +D K L A+ + DD
Sbjct: 52 RTLQLSHENEGKLQKKGE---DLDKYTLTVNDDSTKEDLLNFERKELAEKAKKRRPSDDN 108
Query: 123 VYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFC 182
+ K Q P R D QPD+CKDYKETG+C
Sbjct: 109 ELVLNMSGKNKRLTKQINQ---------------PTMFRDGEVIDTQPDVCKDYKETGYC 153
Query: 183 GFGDSCKFLHDRTDYKYGWQLEQE----HEDGDNKNYEIPDSDEEDHLPFKCYICRNSFK 238
G+GDSCKFLHDR+D+K GW+L QE +E+ + +PF C IC+ ++
Sbjct: 154 GYGDSCKFLHDRSDFKTGWKLNQEWNAEYEEAPVISGPGEK------IPFLCGICKKDYE 207
Query: 239 DPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
PV+T+C H FC+ CA+ ++K +C +C K T+G F + + L
Sbjct: 208 SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNK 256
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 56.0 bits (135), Expect = 1e-10
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 227 PFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQK 269
+C IC + +DPV+ T C H FC +C L + KK KC IC+
Sbjct: 2 ELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified in
a proteins with a wide range of functions such as viral
replication, signal transduction, and development; has
two variants, the C3HC4-type and a C3H2C3-type (RING-H2
finger), which have different cysteine/histidine
pattern; a subset of RINGs are associated with B-Boxes
(C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 47.4 bits (113), Expect = 1e-07
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 229 KCYICRNSFKDPVMT-KCKHYFCTKCALEHFK-KTPKCYICQKNT 271
+C IC F++PV+ C H FC C + K C +C+
Sbjct: 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 47.5 bits (113), Expect = 1e-07
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 230 CYICRNSF-KDPVMTKCKHYFCTKCALEHFK-KTPKCYIC 267
C IC + KDPV+ C H FC C + + C IC
Sbjct: 1 CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 47.0 bits (112), Expect = 2e-07
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 230 CYICRNSFKD---PVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
C IC + F+ V+ C H F +C + + + C +C+
Sbjct: 3 CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRA 45
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and
similar).
Length = 27
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 168 YQPDICKDYKETGFCGFGDSCKFLHDR 194
Y+ ++C+ + TG C +GD CKF H +
Sbjct: 1 YKTELCRFFSRTGTCKYGDRCKFAHGQ 27
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 43.6 bits (103), Expect = 3e-06
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 230 CYICRNSFKDPV-MTKCKHYFCTKCALEHFK-KTPKCYIC 267
C IC KDPV + C H FC+KC L + C +C
Sbjct: 1 CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 46.1 bits (109), Expect = 2e-05
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
+C+IC++ F PV+T C H FC+ C PKC +C
Sbjct: 27 LRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLC 66
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger.
Length = 27
Score = 40.3 bits (95), Expect = 3e-05
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 167 DYQPDICKDYKETGFCGFGDSCKFLHDR 194
Y+ ++CK +K G+C GD CKF H
Sbjct: 1 KYKTELCKFFK-RGYCPRGDRCKFAHPL 27
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger).
Length = 49
Score = 40.4 bits (95), Expect = 4e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 229 KCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQK 269
C IC ++ V C H C +CA + + KC IC++
Sbjct: 4 LCVICLERPRNVVFLPCGHLCLCEECA-KRLRSKKKCPICRQ 44
>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional.
Length = 193
Score = 40.5 bits (94), Expect = 6e-04
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC----------------ALEHFKKTPKCYICQKN 270
F C IC + +DPV+T C H FC C +H ++ PKC +C+ +
Sbjct: 19 FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77
>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal
transduction mechanisms].
Length = 391
Score = 39.3 bits (91), Expect = 0.003
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
+C IC P T C H FC+ C H P C +C
Sbjct: 27 RCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVC 65
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 271
Score = 38.0 bits (88), Expect = 0.006
Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 193 DRTDY--KYGWQLEQEHEDGDNK----NYEIPDSDEED--HLPF------KCYICRNSFK 238
D T Q N I + LPF KC++C +
Sbjct: 167 DLTAVALSLDESRLQPILQPSNNLHTLFQVITKENLSKKNGLPFIPLADYKCFLCLEEPE 226
Query: 239 DPVMTKCKHYFCTKCALEHF--KKTPKCYIC 267
P T C H FC C L + KK C +C
Sbjct: 227 VPSCTPCGHLFCLSCLLISWTKKKYEFCPLC 257
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation
motif. This zinc-finger is the dimerisation motif for
LisH proteins, and is also a typical RING-type of plant
ubiquitin ligases.
Length = 55
Score = 32.7 bits (75), Expect = 0.025
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 228 FKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKTPKCYIC 267
F C I + D PVM C H + K LE K + C
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKA-LEKLAKNGGKFKC 53
>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger. There are 8 cysteine/
histidine residues which are proposed to be the
conserved residues involved in zinc binding. The
protein, of which this domain is the conserved region,
participates in diverse functions relevant to chromosome
metabolism and cell cycle control.
Length = 73
Score = 32.4 bits (74), Expect = 0.058
Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 13/52 (25%)
Query: 230 CYICRNSFKDP-------------VMTKCKHYFCTKCALEHFKKTPKCYICQ 268
C ICRN F V +C H F C K C +C+
Sbjct: 22 CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Cellular processes, Sporulation and
germination].
Length = 615
Score = 34.0 bits (78), Expect = 0.15
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 311 QKTTQSQDISQKVLELNKKLNQAREQQLIDKLADSYPIRRAAQWVVYFTNK--SKQLTED 368
+S+ + +KVL L K + + D D+ P R ++ T + L
Sbjct: 32 LGLIKSEKVEEKVLALQKIVYE-------DPGLDTVPDPRELPEILEDTEDHIADILARR 84
Query: 369 TIKENLSKQNVDKLGEKLEAYLKNIRDQLEKKLK 402
T++ + ++ ++ E+ YL+ IR Q+ K+ K
Sbjct: 85 TVENRIERKVETRMQERQNKYLEEIRLQVLKEEK 118
>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit.
Nse1 and Nse2 are novel non-SMC subunits of the fission
yeast Smc5-6 DNA repair complex. This family is the
zinc-finger domain similar to the MIZ type of
zinc-finger.
Length = 57
Score = 29.9 bits (68), Expect = 0.23
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 222 EEDHLPFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYIC 267
E + C + F++PV KC H F K A+ + K C
Sbjct: 6 EGGTISLTCPLTLQPFEEPVTSKKCNHVF-EKDAILSMLRRNKTVKC 51
>gnl|CDD|116585 pfam07975, C1_4, TFIIH C1-like domain. The carboxyl-terminal
region of TFIIH is essential for transcription activity.
This regions binds three zinc atoms through two
independent domain. The first contains a C4 zinc finger
motif, whereas the second is characterized by a
CX(2)CX(2-4)FCADCD motif. The solution structure of the
second C-terminal domain revealed homology with the
regulatory domain of protein kinase C (pfam00130).
Length = 48
Score = 29.7 bits (67), Expect = 0.29
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 230 CYICRNSFKDPVM--------TKCKHYFCTKC 253
CY C+ D + KCK+ FC C
Sbjct: 2 CYGCQQKLPDGINKTSSVYRCPKCKNVFCLDC 33
>gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR
family) member 1 (DHRS1) and human hydroxysteroid
dehydrogenase-like protein 2 (HSDL2), classical (c)
SDRs. This subgroup includes human DHRS1 and human
HSDL2 and related proteins. These are members of the
classical SDR family, with a canonical Gly-rich
NAD-binding motif and the typical YXXXK active site
motif. However, the rest of the catalytic tetrad is not
strongly conserved. DHRS1 mRNA has been detected in many
tissues, liver, heart, skeletal muscle, kidney and
pancreas; a longer transcript is predominantly expressed
in the liver , a shorter one in the heart. HSDL2 may
play a part in fatty acid metabolism, as it is found in
peroxisomes. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H)-binding
pattern (typically, TGxxxGxG in classical SDRs and
TGxxGxxG in extended SDRs), while substrate binding is
in the C-terminal region. A critical catalytic Tyr
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering), is often found in a
conserved YXXXK pattern. In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is not
generally found among SDRs.
Length = 246
Score = 30.1 bits (68), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 247 HYFCTKCALEHFKKTPKCYI 266
Y ++ AL H K + +I
Sbjct: 127 TYLLSQAALPHMVKAGQGHI 146
>gnl|CDD|234000 TIGR02760, TraI_TIGR, conjugative transfer relaxase protein TraI.
This protein is a component of the relaxosome complex. In
the process of conjugative plasmid transfer the
realaxosome binds to the plasmid at the oriT (origin of
transfer) site. The relaxase protein TraI mediates the
single-strand nicking and ATP-dependent unwinding
(relaxation, helicase activity) of the plasmid molecule.
These two activities reside in separate domains of the
protein.
Length = 1960
Score = 30.3 bits (68), Expect = 2.5
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 276 RTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSSQKTTQSQDISQKVLELNKKLNQARE 335
R EKI+ K K + D + + Q I K +E+ K + E
Sbjct: 1837 RAIEKIINKFKQDNISARIVFPDDWNDIGEEELQKQLMRAISSIEDKDIEIPKAI-ADFE 1895
Query: 336 QQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEK 385
L +D I A+ + L + E+ S+Q +++ K
Sbjct: 1896 SVLKMPNSDIISIIDNARTE----REKSDLEQIVANEHKSQQALERDLNK 1941
>gnl|CDD|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 427
Score = 29.7 bits (66), Expect = 2.7
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 216 EIPDSDEEDH---LPFKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKTP-KCYICQK- 269
EIPD + + KC +C ++P+ T C H FC +C + KC C +
Sbjct: 260 EIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319
Query: 270 ----NTFGEFRTAEKIVQK-LKDAGDIKTMAKDSDSDSDEK 305
+ + V+K LK + D+++ EK
Sbjct: 320 DVLLDGLTPDIDKKLEVEKALKKQRKKVGTSDDNNTPMSEK 360
>gnl|CDD|193542 cd05666, M20_Acy1_like1, M20 Peptidase Aminoacylase 1 subfamily.
Peptidase M20 family, Uncharacterized subfamily of
bacterial proteins predicted as putative amidohydrolases
or hippurate hydrolases. These are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic
N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 373
Score = 29.7 bits (68), Expect = 3.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 272 FGEFRTAEKIVQKLKDAGD 290
F E RTA + +KL++ G
Sbjct: 18 FEEHRTAALVAEKLREFGI 36
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 29.8 bits (67), Expect = 3.2
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 6/93 (6%)
Query: 3 KKRQVKQNTRKRQNDSESESEDETQIVRKEKKIREDPNFQ------KTTKQTKAAKPQVE 56
RQ + ++ ++ + T+ + + + + + KA E
Sbjct: 1197 VSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKE 1256
Query: 57 DSESDESSCQVGVSYKSRKSSARDGPSDMGATA 89
E DE SA + M T
Sbjct: 1257 KEEEDEILDLKDRLAAYNLDSAPAQSAKMEETV 1289
>gnl|CDD|112657 pfam03854, zf-P11, P-11 zinc finger.
Length = 50
Score = 26.4 bits (58), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 227 PFKCYICRNSFKDPVMTKCK-HYFCTKCALEHFKKTPKCYICQK 269
P+ C C F D + C HY C +C + +C IC+K
Sbjct: 2 PYNCKSCW--FADKNLVTCSDHYLCLRCLQLLLSVSERCPICKK 43
>gnl|CDD|233621 TIGR01891, amidohydrolases, amidohydrolase. This model represents
a subfamily of amidohydrolases which are a subset of
those sequences detected by pfam01546. Included within
this group are hydrolases of hippurate
(N-benzylglycine), indoleacetic acid (IAA) N-conjugates
of amino acids, N-acetyl-L-amino acids and
aminobenzoylglutamate. These hydrolases are of the
carboxypeptidase-type, most likely utilizing a zinc ion
in the active site [Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 363
Score = 29.2 bits (66), Expect = 4.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 272 FGEFRTAEKIVQKLKDAG 289
F EF+T+ I + L+ G
Sbjct: 16 FEEFKTSSLIAEALESLG 33
>gnl|CDD|233481 TIGR01582, FDH-beta, formate dehydrogenase, beta subunit, Fe-S
containing. This model represents the beta subunit of
the gamma-proteobacterial formate dehydrogenase. This
subunit contains four 4Fe-4S clusters and is involved in
transmitting electrons from the alpha subunit
(TIGR01553) at the periplasmic space to the gamma
subunit which spans the cytoplasmic membrane. In
addition to the gamma proteobacteria, a sequence from
Aquifex aolicus falls within the scope of this model.
This appears to be the case for the alpha, gamma and
epsilon (accessory protein TIGR01562) chains as well
[Energy metabolism, Anaerobic, Energy metabolism,
Electron transport].
Length = 283
Score = 29.1 bits (65), Expect = 4.5
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 215 YEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGE 274
+ IP D+ D+ P+KC +C + C T FK+ K
Sbjct: 138 FNIPRYDKVDNRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKER--------- 188
Query: 275 FRTAEKIVQKLKDAG 289
AEK V LK G
Sbjct: 189 ---AEKRVADLKSRG 200
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.0 bits (66), Expect = 5.8
Identities = 21/126 (16%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 276 RTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSSQKTTQSQDISQKVLELNKKLN--QA 333
A++I+++ K + + + K++ ++ E+ H + +++ ++ EL K
Sbjct: 38 EEAKRILEEAKK--EAEAIKKEALLEAKEEIHK--LRNEFEKELRERRNELQKLEKRLLQ 93
Query: 334 REQQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKNI 393
+E+ L KL + ++L + + +Q ++K E+LE ++
Sbjct: 94 KEENLDRKLEL-------------LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140
Query: 394 RDQLEK 399
+LE+
Sbjct: 141 LQELER 146
>gnl|CDD|219478 pfam07586, HXXSHH, Protein of unknown function (DUF1552). A family
of proteins identified in Rhodopirellula baltica.
Length = 298
Score = 28.4 bits (64), Expect = 5.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 368 DTIKENLSKQNVDKLG----EKLEAYLKNIRDQLEKKLKQ 403
D + E+ KLG KL+ YL ++R+ +EK+L++
Sbjct: 162 DAVLEDAKSLR-RKLGKEDRAKLDEYLTSVRE-IEKRLEK 199
>gnl|CDD|77219 PRK09519, recA, DNA recombination protein RecA; Reviewed.
Length = 790
Score = 28.9 bits (64), Expect = 6.7
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 333 AREQQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKN 392
+RE LID D IR++ W FT + +QL + KEN V+ +
Sbjct: 710 SREGSLIDMGVDQGLIRKSGAW---FTYEGEQLGQG--KENARNFLVEN---------AD 755
Query: 393 IRDQLEKKLKQ 403
+ D++EKK+K+
Sbjct: 756 VADEIEKKIKE 766
>gnl|CDD|193541 cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase from bacteria
and archaea. Peptidase M20 family, Bacterial and
archaeal Aminoacyclase-1 indole-3-acetic-L-aspartic acid
hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA
amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes
indole-3-acetyl-N-aspartic acid (IAA or auxin) to
indole-3-acetic acid. Genes encoding IAA-amidohydrolases
were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and
ILL2 encode active IAA- amino acid hydrolases, and three
additional amidohydrolase-like genes (ILL3, ILL5, ILL6)
have been isolated. In higher plants, the growth
regulator indole-3-acetic acid (IAA or auxin) is found
both free and conjugated via amide bonding to a variety
of amino acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 415
Score = 28.3 bits (64), Expect = 7.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 272 FGEFRTAEKIVQKLKDAGD 290
+ EFRT +I ++L++ G
Sbjct: 18 WTEFRTTARIAEELEELGY 36
>gnl|CDD|131942 TIGR02896, spore_III_AF, stage III sporulation protein AF. This
family represents the stage III sporulation protein AF
of the bacterial endospore formation program, which
exists in some but not all members of the Firmicutes
(formerly called low-GC Gram-positives). The C-terminal
region of this protein is poorly conserved, so only the
N-terminal region, which includes two predicted
transmembrane domains, is included in the seed alignment
[Cellular processes, Sporulation and germination].
Length = 106
Score = 26.9 bits (60), Expect = 8.9
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 355 VVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKNIRDQLEKKL 401
+Y S+ ++ I+E K LE + Q+EK+L
Sbjct: 60 DIYVFKASELSVKNQIEEQKKKIQAKTRAYILEEMAVQLEKQVEKEL 106
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 28.1 bits (62), Expect = 9.5
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 219 DSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCA--LEHFKKTPKCYICQKNT 271
D+DEE+ C IC S C H C CA L C +C+ T
Sbjct: 56 DTDEENMN---CQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.127 0.363
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,044,787
Number of extensions: 1751868
Number of successful extensions: 2088
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2065
Number of HSP's successfully gapped: 107
Length of query: 403
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 304
Effective length of database: 6,546,556
Effective search space: 1990153024
Effective search space used: 1990153024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.0 bits)