RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16818
(403 letters)
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 102 bits (255), Expect = 4e-27
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 219 DSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTA 278
EE+ +PF+C+ICR +F++PV+TKC+HYFC CALEHF+ TP+CYIC + T G F A
Sbjct: 7 GGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPA 66
Query: 279 EKIVQKLKDAGD 290
++++ KL+ +G
Sbjct: 67 KELMAKLQKSGP 78
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 56.0 bits (135), Expect = 1e-10
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
+C IC + PV CKH FC C +C +C
Sbjct: 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALC 55
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 53.6 bits (129), Expect = 9e-10
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKN 270
+KC C P T+C H FC C +PKC CQ++
Sbjct: 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQES 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 54.4 bits (131), Expect = 1e-09
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 214 NYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272
+ E E ++C IC + ++ V T C H FC C ++ + KC + +
Sbjct: 8 DVEFDPPLESK---YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64
Query: 273 GEF----RTAEKIVQKLK 286
A++ + L
Sbjct: 65 ENQLFPDNFAKREILSLM 82
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 53.2 bits (128), Expect = 3e-09
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 228 FKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFGEF----RTAEKIV 282
+C IC F ++ +C H +C+ C + +C C R +++V
Sbjct: 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELV 82
Query: 283 QKLKDA 288
+ L A
Sbjct: 83 KSLNFA 88
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 52.0 bits (125), Expect = 3e-09
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 222 EEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
EE+ +C C+ K P + C H C+ C LE +C ICQ
Sbjct: 1 EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGC-LE--ASGMQCPICQA 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 53.4 bits (128), Expect = 3e-09
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 205 QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPK 263
+ H + P + C IC + DPV T CKH FC C L K
Sbjct: 4 KIHLSTKLLAVDFPAHFVKS---ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSY 60
Query: 264 CYICQKNTF-GEFRTAEKIVQKLKDAGDIKTMAKDSDSD---SDEKSHDSSQKTTQ 315
C C+ F + + K + ++ +K A+D + + H SS K ++
Sbjct: 61 CPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSSHKESK 116
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 51.3 bits (123), Expect = 6e-09
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 228 FKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYIC 267
C IC+ D +T+C H FC C + HF + +C C
Sbjct: 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKC 56
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 50.8 bits (122), Expect = 6e-09
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
C IC + + PV C H FC KC + + + + C
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKC 60
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 51.2 bits (123), Expect = 7e-09
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
C IC + + PV C H FC KC + + + + C
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKC 60
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 50.4 bits (121), Expect = 9e-09
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
C +C K+PV+ +C H FC C ++ + + C
Sbjct: 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPC 55
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 50.2 bits (120), Expect = 2e-08
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 220 SDEEDHLPFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQK 269
+ C IC + + + V T+C H FC++C + K C C+K
Sbjct: 3 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 50.9 bits (121), Expect = 5e-08
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFGE 274
+ C CRN + P +C H +C+ C C C E
Sbjct: 32 YLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 49.0 bits (117), Expect = 5e-08
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 219 DSDEEDHLP--FKCYICRNSFKDPVMTK-CKHYFCTKCALEHF--KKTPKCYICQKN 270
S E+D +P C IC++ D V+ C + +C +C C C +N
Sbjct: 5 SSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 48.4 bits (115), Expect = 6e-08
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 220 SDEEDHLPFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKN 270
+ C IC + + + V T+C H FC++C + K C C+K
Sbjct: 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 47.8 bits (114), Expect = 8e-08
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 228 FKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQK 269
C IC + + + V T+C H FC++C + K C C+K
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 52
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 49.0 bits (117), Expect = 8e-08
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 228 FKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFGEF--------RTA 278
C +C F D +C H FC C + + + + C IC +T
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 279 EKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSS 310
+ IV KL M + D + S D++
Sbjct: 76 QDIVYKLVPGLFKNEMKRRRDFYAAHPSADAA 107
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 48.0 bits (115), Expect = 1e-07
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC-------ALEHFKKTPKCYICQKN-TFGEFRT 277
C IC +P+ C H C C A+ C +C + +F +
Sbjct: 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 49.3 bits (117), Expect = 2e-07
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 193 DRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLP------FKCYICRNSFKDPVMTKCK 246
D E E + + + + H+ +C IC F + V C
Sbjct: 24 DFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCA 83
Query: 247 HYFCTKCALEHFKKTPKCYIC 267
H FC+ C E K+ +C IC
Sbjct: 84 HSFCSYCINEWMKRKIECPIC 104
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 47.4 bits (113), Expect = 2e-07
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC------ALEHFKKTPKCYICQK 269
C IC K+PV C H FC C + + C +C+
Sbjct: 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 48.2 bits (115), Expect = 2e-07
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC---ALEHFKKTPKCYICQKN-TFGEFRTA---EK 280
+C IC K+PV TKC H FC C L K +C +C+ + T + + +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81
Query: 281 IVQKLK 286
+V++L
Sbjct: 82 LVEELL 87
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 47.0 bits (112), Expect = 2e-07
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 229 KCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
+C IC + M C H FC C ++ P C +C K E +V ++
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLC-KVPV------ESVVHTIES 59
Query: 288 AGDIKTM 294
+
Sbjct: 60 DSEFGDQ 66
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 47.6 bits (113), Expect = 3e-07
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 207 HEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKT-PKC 264
H + + + +S E F+C+IC +D + C C C + +C
Sbjct: 5 HHHHSHMDEQSVESIAEV---FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQC 61
Query: 265 YIC----QKNTFGEFRTAEKIVQKLK 286
C Q R AE++ Q+L
Sbjct: 62 PHCRAPLQLRELVNCRWAEEVTQQLD 87
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 46.9 bits (112), Expect = 3e-07
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC------ALEHFKKTPKCYICQK 269
C IC P+ C H FC C K C +C+
Sbjct: 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 48.5 bits (115), Expect = 5e-07
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 208 EDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYI 266
E+ + E E ++C IC + ++ V T C H FC C ++ + KC +
Sbjct: 2 EEIQGYDVEFDPPLESK---YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
Query: 267 CQK 269
+
Sbjct: 59 DNE 61
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 47.3 bits (112), Expect = 5e-07
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 193 DRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTK 252
D+++ K ++ +D + F+C C+ P+ T C+H C
Sbjct: 18 DKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKD 77
Query: 253 CALEHFKKTP-KCYIC 267
C F+ C C
Sbjct: 78 CLDRSFRAQVFSCPAC 93
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 48.6 bits (115), Expect = 2e-06
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 202 QLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT 261
Q+H + YE+ C IC + KD + C H CT C +
Sbjct: 309 PTPQDHIKVTQEQYELYCEMGSTF--QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE 366
Query: 262 PK-CYIC 267
+ C C
Sbjct: 367 GQGCPFC 373
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 45.3 bits (107), Expect = 2e-06
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYIC 267
IP E +C IC +PV C H C C +K + C C
Sbjct: 10 IPSLSE-----CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFC 56
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 46.2 bits (109), Expect = 2e-06
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 216 EIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFGE 274
E P+ ++ F C C+ PV T+C H C C FK C C ++ G+
Sbjct: 67 EGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPAC-RHDLGQ 125
Query: 275 FR 276
Sbjct: 126 NY 127
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 45.5 bits (107), Expect = 2e-06
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 228 FKCYICRNSFKD-------PVMTKCKHYFCTKCALEHFKKTPKC-----YICQKNTFGEF 275
C IC + + + V T+C H FC++C + K C I K +
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67
Query: 276 RTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSH 307
+ + + G + + S E H
Sbjct: 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGH 99
Score = 37.5 bits (86), Expect = 0.002
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 225 HLPFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQK 269
C IC + + + V T+C H FC++C + K C C+K
Sbjct: 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 121
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 44.5 bits (105), Expect = 4e-06
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 228 FKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKT-PKCYI-CQKNTFGEFRTAEKIVQK 284
+C C N ++PV C+H FC+ C + P CY R + ++Q
Sbjct: 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQL 82
Query: 285 LKDAGDIKTMAKDSDSDSDEKSHDSSQKTTQSQ 317
++ + SD D+ +
Sbjct: 83 CSKLRNLLHDNELSDLKEDKPRKSLFNDAGNKK 115
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 45.4 bits (107), Expect = 6e-06
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 228 FKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKT----PKC--YICQKNTFGEFRTAEK 280
C IC + K+ + TK C H FC C + + P C + K + +
Sbjct: 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDA 114
Query: 281 IVQKLKDAGDIKTMAKDSDSDSDEKSHD 308
++ K+ + D ++ K ++
Sbjct: 115 LISKIYPSRDEYEAHQERVLARINKHNN 142
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 43.2 bits (102), Expect = 7e-06
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 218 PDSDEEDHLP--FKCYICRNSFKDPVMTK-CKHYFCTKCALEHF--KKTPKCYICQK 269
P E+D +P C IC++ D V+ C + +C +C C C +
Sbjct: 2 PLGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 9e-06
Identities = 34/237 (14%), Positives = 87/237 (36%), Gaps = 42/237 (17%)
Query: 192 HDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTK--CKHYF 249
H D++ G E +++ D + ++ F C ++ K +++K H
Sbjct: 4 HHHMDFETG---EHQYQYKD----ILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHII 55
Query: 250 CTKCALEHFKKTPKCYIC----QKNTFGEF-RTAEK-----IVQKLKDAGDIKTMAKDSD 299
+K A+ T + + Q+ +F + ++ +K +M
Sbjct: 56 MSKDAVS---GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 300 SDSDEKSHDSSQKTTQSQDIS--QKVLELNKKLNQAREQQ--------------LIDKLA 343
+ ++ ++ +Q + ++S Q L+L + L + R + + +
Sbjct: 113 IEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 344 DSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSK--QNVDKLGEKLEAYLKNIRDQLE 398
SY ++ + +++ N + +T+ E L K +D + NI+ ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Score = 39.5 bits (91), Expect = 0.002
Identities = 50/291 (17%), Positives = 91/291 (31%), Gaps = 81/291 (27%)
Query: 159 NVRSTVRWDYQPDICKDYKETGFCGFGDSCKFL---HDR--TDY---KYGWQLEQEHEDG 210
NV++ W+ F SCK L + TD+ + +H
Sbjct: 252 NVQNAKAWNA---------------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 211 ---------------DNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMT--KCKHYFCTK- 252
D + ++P + P + I S +D + T KH C K
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 253 -----CALEHFKKTP----KCYICQKNTFGEFRTAEKIVQKLKDAGDIKTMAKDSDSDSD 303
+L + P K + + F + I L + + D
Sbjct: 356 TTIIESSLNVLE--PAEYRKMF----DRLSVFPPSAHIPTIL-----LSLIWFDVIKSDV 404
Query: 304 E----KSHDSS--QKTTQSQDISQKVLELNKKLNQAREQQLIDKLADSYPIRRAAQWVVY 357
K H S +K + IS + L K+ E L + D Y I + +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT-----F 459
Query: 358 FTNKSKQLTEDT-----IKENLSK-QNVDKLGEKLEAYLKNIRDQLEKKLK 402
++ D I +L ++ +++ +L + R LE+K++
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFR-FLEQKIR 508
Score = 37.5 bits (86), Expect = 0.008
Identities = 34/258 (13%), Positives = 65/258 (25%), Gaps = 83/258 (32%)
Query: 189 KFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYI-CRNSF--------KD 239
KF+ + Y + + I + + + YI R+ K
Sbjct: 81 KFVEEVLRINYKFLMSP-----------IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 240 PVMTKCKHYFCTKCALEHFKKTPKCYI-----CQKN-----------------------T 271
V ++ + Y + AL + I K
Sbjct: 130 NV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 272 FGEFRTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSSQKTTQSQDISQKVLEL--NKK 329
+ E +++ L + + D + +S SS + I ++ L +K
Sbjct: 189 LKNCNSPETVLEML------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 330 LNQAREQQLI--DKLADSYPIRRAAQWVV-YFTNKSKQL--TEDTIKENLSKQNVDKLGE 384
L+ + ++ F K L T KQ D L
Sbjct: 243 YENC----LLVLLNVQNA--------KAWNAFNLSCKILLTTRF-------KQVTDFLSA 283
Query: 385 KLEAY--LKNIRDQLEKK 400
+ L + L
Sbjct: 284 ATTTHISLDHHSMTLTPD 301
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 41.6 bits (98), Expect = 2e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 218 PDSDEEDHLPFKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKTP---KCYICQKN 270
+ + +C IC SF + P + C H C +C + + +C C K
Sbjct: 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65
Query: 271 T 271
T
Sbjct: 66 T 66
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 39.8 bits (93), Expect = 7e-05
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 220 SDEEDHLPFKCYICRNSFKDPVM--TKCKH-YFCTKCALEHFKKTPKCYICQK 269
S + C IC+ K+ + K H C CA + K+ C +C++
Sbjct: 1 SSLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQ 53
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 40.6 bits (94), Expect = 8e-05
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 230 CYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPK-CYICQ 268
C C K M CKH FC CA+ H KK K C C
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCS 44
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 39.1 bits (91), Expect = 1e-04
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 15/56 (26%)
Query: 230 CYICRNSFKDP---------------VMTKCKHYFCTKCALEHFKKTPKCYICQKN 270
C ICR D V +C H F C K+ +C +CQ++
Sbjct: 18 CAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 38.3 bits (89), Expect = 2e-04
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 230 CYICRNSFKDPVM--TKCKHYF-CTKCALEHFKKTPKCYICQKN 270
C +C +D + + H C CA K C IC+K
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKE 53
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein;
NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Length = 77
Score = 38.4 bits (89), Expect = 2e-04
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 168 YQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQ 202
Y+ ++C+ Y E+G C +G C+F H + + +
Sbjct: 10 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR 44
Score = 38.4 bits (89), Expect = 3e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 165 RWDYQPDICKDYKETGFCGFGDSCKFLHDRTD 196
Y+ ++C +K G C +G C F+H+ T+
Sbjct: 45 HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 37.2 bits (87), Expect = 4e-04
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 230 CYIC----RNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273
C IC S + C H C E K+ +C +C + G
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.44.1.3
Length = 93
Score = 36.7 bits (84), Expect = 0.002
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 12/62 (19%)
Query: 218 PDSDEEDHLPFKCYICRNSFKDPVMTKC----KHYFCTKCALEHFKKT--------PKCY 265
S + P C IC +D +C H FC C+ E K P
Sbjct: 6 SGSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGE 65
Query: 266 IC 267
C
Sbjct: 66 KC 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 38.4 bits (89), Expect = 0.002
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 209 DGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKC 264
D K +IPD I ++P +T + K EH ++
Sbjct: 197 DEKRKKRDIPD-------YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHF 245
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 34.8 bits (80), Expect = 0.004
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 210 GDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYIC 267
G + + + S+E C +C+N + V+ C+H C C K +C +C
Sbjct: 1 GSSGSSGVEPSEENSKD---CVVCQNGTVNWVLLPCRHTCLCDGCV----KYFQQCPMC 52
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Length = 98
Score = 35.4 bits (81), Expect = 0.004
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 170 PDICKDYKETGFCGFGDSCKFLHD 193
CK Y TG C GD C F HD
Sbjct: 36 DFPCKLYHTTGNCINGDDCMFSHD 59
Score = 30.8 bits (69), Expect = 0.23
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 168 YQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQ 202
+ ++CK Y TGFC ++C ++H K
Sbjct: 11 KKRELCKFYI-TGFCARAENCPYMHGDFPCKLYHT 44
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 34.3 bits (79), Expect = 0.005
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 228 FKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKC 264
C I + PV++ K + F ++ K T
Sbjct: 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGND 41
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 35.2 bits (81), Expect = 0.005
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 227 PFKCYICRNSFKD---PVMTKCKHYFCTKCALEHFK 259
C +C + + +C+ FCT C ++ +
Sbjct: 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.006
Identities = 51/313 (16%), Positives = 92/313 (29%), Gaps = 112/313 (35%)
Query: 14 RQND-----SESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQVEDS------ESDE 62
ND ++ E++T +V+ ++ I+ N+ K + +S
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIK---NYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 63 SSC------QVGVS----------YKSRKSSARDGPSDMGATATLEIETETDKDAQAIYE 106
+ Q G + Y++ D + TL T DA+ ++
Sbjct: 154 AQLVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFT 210
Query: 107 KSLKINAELKGKED--DKVYR----------GLANYAQYF-----------EKKDTAQGN 143
+ L I L+ + DK Y G+ A Y E + +G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG- 269
Query: 144 AASGFVRKGPIRAPA------------NVRSTVRW---------------DYQPDICKDY 176
A+G +G + A A +VR + P I +D
Sbjct: 270 -ATG-HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 177 KETGFCGFGD-----SCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCY 231
E G S L Q+ Q++ + N +P +
Sbjct: 328 LEN---NEGVPSPMLSISNLTQE-------QV-QDYVNKTNS--HLP---AGKQV----E 367
Query: 232 IC-RNSFKDPVMT 243
I N K+ V++
Sbjct: 368 ISLVNGAKNLVVS 380
Score = 35.8 bits (82), Expect = 0.026
Identities = 49/284 (17%), Positives = 78/284 (27%), Gaps = 91/284 (32%)
Query: 59 ESDESSCQVGVSYKSRKSSARDG---PSDMGATATLEIETETDKDAQAIYEKSLKINAEL 115
E+ + + S + PS M L I T + Q K N+ L
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPM-----LSISNLTQEQVQDYVNK---TNSHL 360
Query: 116 KGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKD 175
+V L N A V GP ++ + T+R + D
Sbjct: 361 P--AGKQVEISLVN--------------GAKNLVVSGPPQSLYGLNLTLR-KAKAPSGLD 403
Query: 176 YKETGFCG----FGDSCKFL------HDRTDY------KYGWQLEQEHEDGDNKNYEIP- 218
F F S +FL H + L + + + K+ +IP
Sbjct: 404 QSRIPFSERKLKF--SNRFLPVASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 219 ----D-SD---EEDHLPFKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYICQK 269
D SD + + I + PV + T H +
Sbjct: 460 YDTFDGSDLRVLSGSISER--IVDCIIRLPVKWETTTQFKAT-----HI-------LD-- 503
Query: 270 NTFGEFRTA--EKIVQKLKD--------AGDIKTMAKDSDSDSD 303
FG + + + KD AG + D + D D
Sbjct: 504 --FGPGGASGLGVLTHRNKDGTGVRVIVAGTL-----DINPDDD 540
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 34.2 bits (78), Expect = 0.006
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 228 FKCYIC-----RNSFKDPVMTKCKHYFCTKCALEHFKKTP-KCYICQK 269
C C RN ++ C H C C F + C C
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGT 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 36.9 bits (84), Expect = 0.008
Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 13/133 (9%)
Query: 185 GDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEED-------HLPFKCYICRNSF 237
+ +++ K L D ++ + +ED + C I +
Sbjct: 132 PEPATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPY 191
Query: 238 KDPVM-TKCKHYFCTKCALEHFKKTPK----CYICQKN-TFGEFRTAEKIVQKLKDAGDI 291
+ P++ KC H F + + C + + +F + + K A
Sbjct: 192 EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251
Query: 292 KTMAKDSDSDSDE 304
++ +D S
Sbjct: 252 ESQEQDKRSSQAI 264
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 33.9 bits (78), Expect = 0.008
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 214 NYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
+ ++ +C IC + ++ C H FC KC + + C IC
Sbjct: 2 SSGSSGRVKQLTDEEECCICMDGRA-DLILPCAHSFCQKCIDKWSDRHRNCPIC 54
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 34.4 bits (78), Expect = 0.011
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 227 PFKCYICRNSFKDPVMTKCK-HYFCTKCALEHFKKTPKCYICQK 269
P C C F++ + +C HY C C + +C IC+
Sbjct: 28 PQFCKSCW--FENKGLVECNNHYLCLNCLTLLLSVSNRCPICKM 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 33.4 bits (76), Expect = 0.016
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 230 CYICRNSFKDPVM-TKCKHYFCTKCALEHFK--KTPKCYICQK 269
C IC + C C ++F+ P+C C
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit;
CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 77
Score = 32.9 bits (75), Expect = 0.020
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 172 ICKDYKETGFCGFGDSCKFLHDRTDYK 198
+CK + G C GD C+FLH+ K
Sbjct: 12 VCKHWLR-GLCKKGDQCEFLHEYDMTK 37
Score = 28.7 bits (64), Expect = 0.65
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 172 ICKDYKETGFCGFGDSCKFLHDRTDYK 198
C Y + G C C FLH + K
Sbjct: 40 ECYFYSKFGEC-SNKECPFLHIDPESK 65
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 33.7 bits (76), Expect = 0.024
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 29/84 (34%)
Query: 216 EIPDSDEEDHLPFKCYICRNSFKDP------------------VMTKCKHYFCTKCALEH 257
E+ + EED C IC +TKC H F C L
Sbjct: 19 ELKVAPEED-----CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM 73
Query: 258 FKKTPK-----CYICQKNTFGEFR 276
+ K C C K +GE
Sbjct: 74 YCNGNKDGSLQCPSC-KTIYGEKT 96
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
influenza A, nonstructural protein, viral protein: HOST
complex, Zn finger; 1.95A {Homo sapiens}
Length = 72
Score = 32.9 bits (75), Expect = 0.024
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 168 YQPDICKDYKETGFCGFGDSCKFLHDRTDYK 198
+ +CK + G C GD C+FLH+ K
Sbjct: 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMTK 43
Score = 27.9 bits (62), Expect = 1.3
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 172 ICKDYKETGFCGFGDSCKFLHDRTDYK 198
C Y + G C C FLH + K
Sbjct: 46 ECYFYSKFGEC-SNKECPFLHIDPESK 71
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein;
1.80A {Rattus norvegicus}
Length = 229
Score = 35.1 bits (80), Expect = 0.026
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 170 PDICKDYK---ETGFCGFGDSCKFLH 192
P+ICK YK CG C+ LH
Sbjct: 151 PEICKSYKGEGRKQTCGQPQPCERLH 176
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 33.4 bits (75), Expect = 0.044
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 202 QLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTK-----CKHYFCTKCALE 256
+EQE E + +C +C CK CTKC +E
Sbjct: 30 TMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89
Query: 257 HFKKTPK----CYICQK 269
P C IC +
Sbjct: 90 TSNNRPHPVWLCKICLE 106
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 34.6 bits (77), Expect = 0.057
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 192 HDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHY-FC 250
+ + + D + + C +C + V C H C
Sbjct: 260 STLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVC 319
Query: 251 TKCALEHFKKTPKCYICQK 269
+CA KC IC+
Sbjct: 320 QECA----PSLRKCPICRG 334
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.074
Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 3 KKRQVKQNTRKRQNDSESESEDETQIVRKEKKIRE-----DPNFQKTTKQTKAAKPQ-VE 56
+K + +Q R ++ D+ S+ ++ + +K + E +K + A +
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Query: 57 DSESD 61
++D
Sbjct: 148 QPDAD 152
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 31.0 bits (70), Expect = 0.075
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 216 EIPDSDEEDHLPFKCYICRNSFKDPVM---TKCKHYFCTKC 253
EIP + CY C+ KD + C++ FC C
Sbjct: 6 EIPLEEYNGER--FCYGCQGELKDQHVYVCAVCQNVFCVDC 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 31.5 bits (71), Expect = 0.097
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 228 FKCYICRNSFKDPVM-TKCKHYFCTKCALEHFK---KTPKCYIC 267
F C I + K PV C H + + + K K C
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYC 51
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 33.5 bits (77), Expect = 0.12
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 220 SDEEDHLPFKCYICRNSFKDPVMTKCKHY----------FCTKCALEHFKKTPKCYICQK 269
+D E H +C C + + + + CT C H + C C
Sbjct: 26 TDSETHENAQCKSCHGEYAE-LANDKLQFDPHNSHLGDINCTSCHKGHEEPKFYCNECHS 84
Query: 270 NTFGEFRTAEKIVQKLKDAG-DIKTMAKDSDSDSDEK 305
++ +K D G D + K + E
Sbjct: 85 FDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSET 121
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 31.7 bits (71), Expect = 0.13
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 205 QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSF----KDPVMTKCKHYFCTKCALEHFKK 260
Q + + ++ P E C C F + CK FC C+ +
Sbjct: 2 QAYSNPGYSSFPSPTGLEP-----SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG 56
Query: 261 TPKCYICQKNTFGEFRTAEKIVQKLKD 287
C +CQ+ F+ E + K+KD
Sbjct: 57 PRLCLLCQRFRATAFQREELMKMKVKD 83
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 30.5 bits (69), Expect = 0.15
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 12/68 (17%)
Query: 204 EQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYF-CTKCALEHFKKTP 262
Q+ + + + + C IC + V C H C +CA +
Sbjct: 9 LQKEISTEEQLRRLQEEKL-------CKICMDRNIAIVFVPCGHLVTCKQCA----EAVD 57
Query: 263 KCYICQKN 270
KC +C
Sbjct: 58 KCPMCYTV 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 30.5 bits (69), Expect = 0.19
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 230 CYICRNSFKDPVMTKCKHYF-CTKCALEHFKKTPKCYICQKN 270
C +C + C H C CA + C +C+
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCA----AQLQSCPVCRSR 58
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 30.2 bits (68), Expect = 0.21
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 228 FKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKC 264
F C C S +T+ C C + P
Sbjct: 36 FNCKKCSLSLVGRGFLTERDDILCPDCGKDISG--PSS 71
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 31.9 bits (72), Expect = 0.24
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 228 FKCYICRNSFKD---PVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
KC C+ D TK C + F + C C +
Sbjct: 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQ 77
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 30.5 bits (69), Expect = 0.24
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 228 FKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
F+C C + + + K C KC PKC C K
Sbjct: 34 FRCAKCLHPLANETFVAKDNKILCNKCTTREDS--PKCKGCFK 74
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.6 bits (71), Expect = 0.34
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 25/81 (30%)
Query: 203 LEQEHEDGDNKNY-------------EIPDSDEEDHLPFKCYICRNSFKDPVMTKC---- 245
LE K + E+P +E N D + KC
Sbjct: 151 LELSDTKQKGKKFLVIAYEPFENIAIELP-PNEILFSENNDMDNNNDGVDELNKKCTFWD 209
Query: 246 ---KHYFCTKCALEHFKKTPK 263
K Y+ FK+ +
Sbjct: 210 AISKLYYVQF----FFKQAEQ 226
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 29.3 bits (66), Expect = 0.37
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 228 FKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKC 264
F+C +C+ D + + C C P
Sbjct: 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPSS 69
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 29.4 bits (66), Expect = 0.40
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 228 FKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKC 264
F+C C+ S D P + C C F +
Sbjct: 44 FRCCRCQRSLADEPFTCQDSELLCNDCYCSAF--SSGP 79
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 29.6 bits (67), Expect = 0.41
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 218 PDSDEEDH--LP--FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKC 264
P S E D+ P F+ + DPV L H +P
Sbjct: 1 PGSAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTD 51
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 31.0 bits (70), Expect = 0.42
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
KC C + ++ + +C + F KC CQ
Sbjct: 34 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQL 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 31.7 bits (71), Expect = 0.51
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 11/102 (10%)
Query: 172 ICKD---YKETGFCGFGDSCKFLHDRTDYKYGWQLEQ-----EHEDGDNKNYEIPDSDEE 223
+ KD + F D ++ +L E + ++ ++ D
Sbjct: 830 VAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVP 889
Query: 224 DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALE-HFKKTPKC 264
D F + KDPV+ + ++ H
Sbjct: 890 DE--FLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTD 929
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 30.3 bits (67), Expect = 0.63
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 211 DNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTK-----CKHYFCTKCALEH-FKKTPKC 264
+ SD C C ++ + ++ C + C C+ H ++ C
Sbjct: 52 KESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLC 111
Query: 265 YICQKNTFGEFRTAE 279
C + + E
Sbjct: 112 DPCHLARVVKIGSLE 126
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 28.6 bits (64), Expect = 0.67
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 222 EEDHLPFKCYICRNSFK--DPVMT-KCKHYFCTKCALEHFKKTPKCYICQKN 270
+E +L C +C FK D + CKH F KC ++ + C +C
Sbjct: 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 61
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 29.2 bits (66), Expect = 0.68
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 230 CYICRNSFKDPVMTK---CKHYFCTKCALEHFKKTPKCYIC 267
C IC + + + C HYF C +K+ C +C
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 28.7 bits (64), Expect = 0.70
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 228 FKCYICRNSFKD-PVMTKCKHYFCTKCA 254
F C C S +T+ K FC KC
Sbjct: 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCG 63
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 29.7 bits (67), Expect = 0.71
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 228 FKCYICRNSFKD---PVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
C +C + + K C + L F + C C K
Sbjct: 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDK 74
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 29.3 bits (66), Expect = 0.72
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 202 QLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT 261
++ ++ + + PD F+ + DPV L H +
Sbjct: 11 EIVAKNARAEIDYSDAPDE-------FRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS 63
Query: 262 PKC 264
P
Sbjct: 64 PTD 66
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 30.3 bits (68), Expect = 0.74
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
KC C + ++ + +C + F KC CQ
Sbjct: 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQL 127
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 29.2 bits (65), Expect = 1.0
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 13/54 (24%)
Query: 229 KCYICRNSFKDPVMTKCK------HYFCTKCALEHFKK-------TPKCYICQK 269
C +C + C H C A+ K+ C C++
Sbjct: 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQ 62
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 76
Score = 28.0 bits (62), Expect = 1.1
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 230 CYICRNSF-----KDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273
C C+ S K C H C C ++ T +C +C + G
Sbjct: 28 CARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESNGTWRCKVCSGPSSG 76
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 28.2 bits (63), Expect = 1.2
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 228 FKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKC 264
+ C C + K +C K A E
Sbjct: 42 YVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS--GPS 77
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 27.8 bits (62), Expect = 1.2
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 228 FKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKC 264
F C CR + + +C C + + P
Sbjct: 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPSS 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 376 KQNVDKLGEKLEAYLKN------IRDQLE 398
KQ + KL L+ Y + I+ +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 5.2
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 8/21 (38%)
Query: 335 EQQLIDKL--------ADSYP 347
E+Q + KL DS P
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
Score = 27.2 bits (59), Expect = 6.5
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 36/62 (58%)
Query: 106 EK-SLK-INAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPA-NVRS 162
EK +LK + A LK L YA APA +++
Sbjct: 18 EKQALKKLQASLK----------L--YA---------------------DDSAPALAIKA 44
Query: 163 TV 164
T+
Sbjct: 45 TM 46
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 28.9 bits (65), Expect = 1.5
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 228 FKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
F C+ C + + C C +++ C C
Sbjct: 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHN 71
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 1.8
Identities = 19/128 (14%), Positives = 43/128 (33%)
Query: 276 RTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSSQKTTQSQDISQKVLELNKKLNQARE 335
A++ ++KLK K + K +K + + +LE L
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959
Query: 336 QQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKNIRD 395
+ +D +R + + TN+ L E+ K + +E + +
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019
Query: 396 QLEKKLKQ 403
+ E+ + +
Sbjct: 1020 ETEQLVSE 1027
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 29.3 bits (65), Expect = 1.8
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 224 DHLPFKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKK--TPKCYICQKN 270
C IC + + C C ++F+ P+C C
Sbjct: 177 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium,
SGC, nucleus, transcription, transcription regulation,
chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo
sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A
3mew_A
Length = 180
Score = 29.2 bits (65), Expect = 1.9
Identities = 12/48 (25%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 185 GDSCKFLHDRTDYKYGWQL-EQEHEDGDNKNYEIPDSDEEDHLPFKCY 231
GD D W L E YE+ D DEE
Sbjct: 48 GDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDIDEEGKERHTLS 95
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA
binding, ranbp2, RBZ, ZIS, alternative splicing,
metal-binding, mRNA processing; NMR {Homo sapiens} PDB:
3g9y_A
Length = 33
Score = 26.1 bits (57), Expect = 2.3
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 250 CTKCALEHFKKTPKCYICQKNTFGE 274
C C+ ++ + +C +C + +
Sbjct: 9 CKTCSNVNWARRSECNMCNTPKYAK 33
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Length = 32
Score = 26.2 bits (57), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 244 KCKHYFCTKCALEHFKKTPKCYIC 267
K + + C KC L +F+K KC+ C
Sbjct: 2 KFEDWLCNKCCLNNFRKRLKCFRC 25
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 26.7 bits (59), Expect = 3.5
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 228 FKCYICRNSF--KDPVMTKCKHYFCTKCALEHFKKTP 262
F C +CR F D V K C KC+L P
Sbjct: 42 FVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGP 78
Score = 26.3 bits (58), Expect = 5.9
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
+C+ C + V++ + + F C +C+
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYH----PDCF----VCAVCRL 49
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding,
structural GE PSI, protein structure initiative; 2.40A
{Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Length = 404
Score = 28.7 bits (65), Expect = 3.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 272 FGEFRTAEKIVQKLKDAG 289
F E T +KI + L++
Sbjct: 49 FQEVETTKKIRRWLEEEQ 66
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 26.7 bits (59), Expect = 3.9
Identities = 8/41 (19%), Positives = 10/41 (24%), Gaps = 2/41 (4%)
Query: 224 DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKC 264
DH F C C +C C + P
Sbjct: 40 DH--FNCANCGKELTADARELKGELYCLPCHDKMGVSGPSS 78
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 26.5 bits (59), Expect = 4.4
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 230 CYICRNSFKDPVMTK---CKHYFCTKC 253
C +C F+ + + C H F KC
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKC 52
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 26.7 bits (59), Expect = 4.5
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 3/38 (7%)
Query: 228 FKCYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPKC 264
F C C + K +C A
Sbjct: 52 FVCADCNLNLKQKGYFFVEGELYCETHARARTS--GPS 87
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 28.3 bits (63), Expect = 4.6
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 287 DAGDIKTMAKDSDSDSDEKSHDSSQKTTQSQDISQKVLELNKKLNQAREQQLIDKLADSY 346
+ T S E D + + D + + ARE+ +L Y
Sbjct: 62 EEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREK--FAELRAQY 119
Query: 347 PIRRAAQWVVYFTNKSKQLTEDTIKEN-----LSKQNVDKLGEKLEAYLKNIRDQLEKKL 401
+ R ++ + Q + E L + D L + + +R Q E+ +
Sbjct: 120 VVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQ-ERLI 178
Query: 402 KQ 403
+
Sbjct: 179 MK 180
>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron,
oxidoreductase; HET: NTD; 2.50A {Streptomyces
avermitilis} SCOP: d.32.1.3 d.32.1.3
Length = 381
Score = 28.3 bits (62), Expect = 5.3
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 7/98 (7%)
Query: 174 KDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYIC 233
+G + L DRT Y + + DH +
Sbjct: 136 GTVVLAAIATYGKTRHTLVDRTGYDGPYLPGYVAAAPIVEPPAHRTFQAIDHCVGNVELG 195
Query: 234 RNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT 271
R M + ++ + K+ I + +
Sbjct: 196 R-------MNEWVGFYNKVMGFTNMKEFVGDDIATEYS 226
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc
finger, acetylation, cytoplasm, GTP-binding, HOST-virus
interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB:
2k0c_A 3ch5_B* 3gj6_B*
Length = 98
Score = 26.4 bits (57), Expect = 6.5
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 235 NSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQ 268
F D + C C +++ + KC C+
Sbjct: 60 TGFGDKFKPAIGTWDCDTCLVQNKPEAVKCVACE 93
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 25.9 bits (57), Expect = 6.9
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 228 FKCYICRNSFKD-PVMTKCKHYFCTKCALE 256
F C C + + + + +C CA +
Sbjct: 47 FHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 27.3 bits (60), Expect = 7.5
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 33 KKIREDPNFQKTTKQTKAAKPQVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLE 92
K R D ++ +A + S V ++A A
Sbjct: 80 KDWRTDRVLRRL----EALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKA 135
Query: 93 IETETDKDAQAIYEKSLKINAEL 115
+ TD A+ I EK++ I E+
Sbjct: 136 LLRNTDLSAREIVEKAMTIAGEI 158
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 25.8 bits (57), Expect = 9.5
Identities = 7/32 (21%), Positives = 8/32 (25%), Gaps = 2/32 (6%)
Query: 249 FCTKCALEHFKKTPKCYICQKNTFGEFRTAEK 280
C F P+C C K T
Sbjct: 5 SSGPCYENKFA--PRCARCSKTLTQGGVTYRD 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.363
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,586,977
Number of extensions: 318470
Number of successful extensions: 1018
Number of sequences better than 10.0: 1
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 161
Length of query: 403
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 307
Effective length of database: 4,021,377
Effective search space: 1234562739
Effective search space used: 1234562739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.5 bits)