RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16818
         (403 letters)



>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
           (RAG1), dimerization domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 86

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 205 QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPK 263
           + H        + P    +      C IC +   DPV T CKH FC  C L   K     
Sbjct: 4   KIHLSTKLLAVDFPAHFVKS---ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSY 60

Query: 264 CYICQK 269
           C  C+ 
Sbjct: 61  CPSCRY 66


>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
           proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 56

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 222 EEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKC 264
           EE+    +C  C+   K P +  C H  C+ C      + P C
Sbjct: 1   EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPIC 43


>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
           herpesvirus 1 [TaxId: 10326]}
          Length = 68

 Score = 49.6 bits (118), Expect = 9e-09
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 229 KCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
           +C IC     +  M   C H FC  C     ++ P C +C+        +    ++   +
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKV----PVESVVHTIESDSE 62

Query: 288 AGD 290
            GD
Sbjct: 63  FGD 65


>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 79

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 205 QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPK 263
           Q+H     + YE+            C IC  + KD  +  C H  CT C     + +   
Sbjct: 3   QDHIKVTQEQYELYCEMGSTF--QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG 60

Query: 264 CYICQKN 270
           C  C+  
Sbjct: 61  CPFCRCE 67


>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 103

 Score = 47.8 bits (113), Expect = 8e-08
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 216 EIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKC---ALEHFKKTPKCYIC----Q 268
           E+ +         +C IC    K+PV TKC H FC  C    L   K   +C +C     
Sbjct: 10  EVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69

Query: 269 KNTFGEFRTAEKIVQKLK 286
           K +  E     ++V++L 
Sbjct: 70  KRSLQESTRFSQLVEELL 87


>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
           [TaxId: 4530]}
          Length = 55

 Score = 43.3 bits (102), Expect = 9e-07
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 230 CYICRNSFKDP----VMTKCKHYFCTKCALEHFKKTPKCYICQKN 270
           C +C    +D      + +C H F  +C          C +C+  
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52


>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 78

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 7/57 (12%)

Query: 216 EIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272
           E P+        F+C I     KDPV+      +      +      K     + T 
Sbjct: 4   EFPEY-------FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53


>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 56

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 230 CYICRNSFKDPVMTK-CKHYFCTKCALEHFKKTPKCYICQK 269
           C I     + PV++   +  F      ++ K T    I  +
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNE 43


>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 52

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 5/45 (11%)

Query: 230 CYICRNSFKD----PVMTKCKHYFCTKCALEHFK-KTPKCYICQK 269
           C +C    +          C +  C  C       +   C  C+K
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 47


>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 34

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 168 YQPDICKDYKETGFCGFGDSCKFLHD 193
           Y+ ++C+ +   GFC +G  C F+H+
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHN 31


>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 168 YQPDICKDYKETGFCGFGDSCKFLH 192
           Y+ ++C+ ++E+G C +G+ C+F H
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAH 28


>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 168 YQPDICKDYKETGFCGFGDSCKFLH 192
           Y+ ++C+ Y E+G C +G  C+F H
Sbjct: 7   YKTELCRTYSESGRCRYGAKCQFAH 31


>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
           ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 88

 Score = 33.2 bits (75), Expect = 0.007
 Identities = 12/59 (20%), Positives = 14/59 (23%), Gaps = 18/59 (30%)

Query: 229 KCYICRNSFKDP------------------VMTKCKHYFCTKCALEHFKKTPKCYICQK 269
            C ICRN   D                       C H F   C     K    C +  +
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 81


>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 32.8 bits (74), Expect = 0.008
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 230 CYICRNSFKDP-----VMTKCKHYFCTKCALEHFKKTP-KCYICQK 269
           C  C+ +         ++  C H  C  C    F +    C  C  
Sbjct: 6   CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGT 51


>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 97

 Score = 33.2 bits (75), Expect = 0.010
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 228 FKCYICRNSFK-DPVMTKCKHYFCTKCALEHFKKTPK--CYICQKNTFGEFRTAEKIVQK 284
            +C  C N  +    +  C+H FC+ C  +                     R  + ++Q 
Sbjct: 23  LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQL 82

Query: 285 LKDAGDIKTMAKDSD 299
                ++    + SD
Sbjct: 83  CSKLRNLLHDNELSD 97


>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
           protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 80

 Score = 32.5 bits (73), Expect = 0.011
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 7/49 (14%)

Query: 216 EIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKC 264
           +IPD            I     ++P +T     +  K   EH ++    
Sbjct: 3   DIPDY-------LCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHF 44


>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
           {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
           [TaxId: 37296]}
          Length = 60

 Score = 31.8 bits (71), Expect = 0.014
 Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 9/56 (16%)

Query: 221 DEEDHLPFKCYICRNSFKDP-----VMTKCKHYFCTKCALEHFKKTP--KCYICQK 269
           ++ED     C+IC     +        T         C       +    C IC  
Sbjct: 2   EDEDVP--VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55


>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 30.2 bits (68), Expect = 0.051
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 216 EIPDSDEEDHLPFKCYICRNSFKDP---VMTKCKHYFCTKC 253
           EIP  +        CY C+   KD    V   C++ FC  C
Sbjct: 6   EIPLEEYNGER--FCYGCQGELKDQHVYVCAVCQNVFCVDC 44


>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 30.4 bits (68), Expect = 0.089
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 228 FKCYICRNSFKD---PVMTKCKHYFCTKCALEHFK 259
             C +C   +       + +C+  FCT C  ++ +
Sbjct: 6   SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE 40


>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
           Sakura) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 51

 Score = 28.0 bits (62), Expect = 0.26
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 230 CYICRNSFKDPVM----TKCKHYFCTKCALEHFKKTPKCYICQK 269
           C  C   F +         CK  FC  C+ +       C +CQ+
Sbjct: 3   CKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 46


>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 98

 Score = 28.6 bits (63), Expect = 0.40
 Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 5/67 (7%)

Query: 210 GDNKNYEIPDSDEEDHLP----FKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKTPKC 264
           G + +  +   +EE +      F   I      DPV+    +          H       
Sbjct: 1   GSSGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTD 60

Query: 265 YICQKNT 271
              +   
Sbjct: 61  PFNRSPL 67


>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 143

 Score = 29.4 bits (65), Expect = 0.40
 Identities = 12/112 (10%), Positives = 28/112 (25%)

Query: 178 ETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSF 237
           ET F     +     +R  +  G +      +        P  +++           +  
Sbjct: 24  ETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDP 83

Query: 238 KDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAG 289
            D  + +              +   +           F    K V+  ++AG
Sbjct: 84  LDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAG 135


>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 114

 Score = 28.8 bits (63), Expect = 0.43
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 6/77 (7%)

Query: 198 KYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEH 257
           KY  +L+   E+      E                         +TKC H F   C L  
Sbjct: 15  KYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPM-VVGRLTKCSHAFHLLCLLAM 73

Query: 258 FKK-----TPKCYICQK 269
           +       + +C  C+ 
Sbjct: 74  YCNGNKDGSLQCPSCKT 90


>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 28.5 bits (63), Expect = 0.61
 Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 202 QLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTK-----CKHYFCTKCALE 256
            +EQE         E    +       +C +C                CK   CTKC +E
Sbjct: 23  TMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 82

Query: 257 HFKKTPK----CYICQKN 270
                P     C IC + 
Sbjct: 83  TSNNRPHPVWLCKICLEQ 100


>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus
           subtilis [TaxId: 1423]}
          Length = 261

 Score = 28.2 bits (62), Expect = 1.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 272 FGEFRTAEKIVQKLKDAG 289
           F E  T +KI + L++  
Sbjct: 22  FQEVETTKKIRRWLEEEQ 39


>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase,
           small subunit {Desulfovibrio gigas [TaxId: 879]}
          Length = 214

 Score = 28.0 bits (61), Expect = 2.0
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 163 TVRWDYQPDI---CKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNK-----N 214
            + W + PD    C            D    +HD       +  + +  +          
Sbjct: 62  RIDWLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACP 121

Query: 215 YEIPDSDEEDHLPFKCYICRNSFKDPVMTKC 245
           Y++P    E +   KC +C +   + +   C
Sbjct: 122 YDVPRKVAESNQMAKCDMCIDRITNGLRPAC 152


>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli
           [TaxId: 562]}
          Length = 288

 Score = 27.8 bits (60), Expect = 2.3
 Identities = 9/124 (7%), Positives = 25/124 (20%)

Query: 198 KYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEH 257
           K G +  +             ++             +                   A   
Sbjct: 128 KLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNV 187

Query: 258 FKKTPKCYICQKNTFGEFRTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSSQKTTQSQ 317
            ++ P                 + V      G +  +  D   ++ +         T +Q
Sbjct: 188 LQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQ 247

Query: 318 DISQ 321
           + + 
Sbjct: 248 NPAD 251


>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing
           protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 29

 Score = 24.4 bits (53), Expect = 2.5
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 171 DICKDYKETGFCGFGDSCKFLHD 193
           ++CK Y  TGFC   ++C ++H 
Sbjct: 7   ELCKFYI-TGFCARAENCPYMHG 28


>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase,
           catalytic domain {Mouse-ear cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 273

 Score = 27.1 bits (59), Expect = 3.9
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 272 FGEFRTAEKIVQKLKDAG 289
           + E  T++ I  +L+  G
Sbjct: 30  YEELETSKLIRSELELIG 47


>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 400

 Score = 27.1 bits (58), Expect = 4.3
 Identities = 20/190 (10%), Positives = 43/190 (22%), Gaps = 11/190 (5%)

Query: 91  LEIETETDKDAQAIYEKSLKINAELKGKE--------DDKVYRGLANYAQYFEKKDTAQG 142
           ++I T  DKD Q   +  +   +  K K+        D K    +A  +   + KD    
Sbjct: 37  IKIYTNMDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGLVA-ISGGRDFKDVVNR 95

Query: 143 NAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQ 202
           N A+     G    P                 ++       +        +     +G  
Sbjct: 96  NQATDPHPTGSSLKPFLA--YGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTV 153

Query: 203 LEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTP 262
              +          +                + + K  +  +              + +P
Sbjct: 154 SIYDALRQSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSP 213

Query: 263 KCYICQKNTF 272
                     
Sbjct: 214 TQLASAFAAI 223


>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
           protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 56

 Score = 24.1 bits (52), Expect = 6.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 173 CKDYKETGFCGFGDSCKFLHD 193
           CK Y  TG C  GD C F HD
Sbjct: 3   CKLYHTTGNCINGDDCMFSHD 23


>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 298

 Score = 26.3 bits (57), Expect = 7.9
 Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 2/119 (1%)

Query: 134 FEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHD 193
            EK++   GNA +       I             Y  D   D  E  F  F +S   ++ 
Sbjct: 30  IEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLVE--FNRFTNSPLAIYK 87

Query: 194 RTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTK 252
              +   + +   H+    K+ +   +               + ++  ++         
Sbjct: 88  DKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQAISLVGEDLYQA 146


>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
           factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
          Length = 51

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 229 KCYICRNSFKDPVMTKCK------HYFCTKCALEHFKKTP-KCYICQKNT 271
           +C +CR   +D  +  C       H FC + AL        +C  CQ  T
Sbjct: 2   RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPAT 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.127    0.363 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,389,319
Number of extensions: 65246
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 53
Length of query: 403
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,213,086
Effective search space: 383335176
Effective search space used: 383335176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.1 bits)